1
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Liu B, Buonomano DV. Ex vivo cortical circuits learn to predict and spontaneously replay temporal patterns. Nat Commun 2025; 16:3179. [PMID: 40185714 PMCID: PMC11971321 DOI: 10.1038/s41467-025-58013-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2024] [Accepted: 03/07/2025] [Indexed: 04/07/2025] Open
Abstract
It has been proposed that prediction and timing are computational primitives of neocortical microcircuits, specifically, that neural mechanisms are in place to allow neocortical circuits to autonomously learn the temporal structure of external stimuli and generate internal predictions. To test this hypothesis, we trained cortical organotypic slices on two temporal patterns using dual-optical stimulation. After 24-h of training, whole-cell recordings revealed network dynamics consistent with training-specific timed prediction. Unexpectedly, there was replay of the learned temporal structure during spontaneous activity. Furthermore, some neurons exhibited timed prediction errors as revealed by larger responses when the expected stimulus was omitted compared to when it was present. Mechanistically our results indicate that learning relied in part on asymmetric connectivity between distinct neuronal ensembles with temporally-ordered activation. These findings further suggest that local cortical microcircuits are intrinsically capable of learning temporal information and generating predictions, and that the learning rules underlying temporal learning and spontaneous replay can be intrinsic to local cortical microcircuits and not necessarily dependent on top-down interactions.
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Affiliation(s)
- Benjamin Liu
- Department of Neurobiology, Deparment of Psychology, and Psychology, Integrative Center for Learning and Memory, University of California, Los Angeles, Los Angeles, CA, USA
| | - Dean V Buonomano
- Department of Neurobiology, Deparment of Psychology, and Psychology, Integrative Center for Learning and Memory, University of California, Los Angeles, Los Angeles, CA, USA.
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2
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Trukovich JJ. From reactions to reflection: A recursive framework for the evolution of cognition and complexity. Biosystems 2025; 250:105408. [PMID: 39892697 DOI: 10.1016/j.biosystems.2025.105408] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2024] [Revised: 01/28/2025] [Accepted: 01/29/2025] [Indexed: 02/04/2025]
Abstract
This paper presents a comprehensive framework that traces the evolution of consciousness through a continuum of recursive processes spanning reaction, temporogenesis, symbiogenesis, and cognogenesis. By integrating biological cooperation, temporal structuring, and self-referential processing, our model provides a novel perspective on how complexity emerges and scales across evolutionary time. Reaction is established as the foundational mechanism that enables adaptive responses to environmental stimuli, which, through recursive refinement, transitions into temporogenesis-the synchronization of internal processes with external temporal rhythms. Symbiogenesis further enhances this process by fostering cooperative interactions at multiple biological levels, facilitating the emergence of higher-order cognitive functions. Cognogenesis represents the culmination of these recursive processes, where self-awareness and intentionality arise through iterative feedback loops. Our framework offers a biologically grounded pathway to addressing the "hard problem" of consciousness by proposing that subjective experience emerges as a result of progressively complex recursive interactions rather than as a static or isolated phenomenon. In comparing our approach with established theories such as Integrated Information Theory, Global Workspace Theory, and enactive cognition, we highlight its unique contributions in situating consciousness within a broader evolutionary and biological context. This work aims to provide a foundational model that bridges the gap between reaction and reflection, offering empirical avenues for further exploration in neuroscience, evolutionary biology, and artificial intelligence.
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3
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Díaz H, Bayones L, Alvarez M, Andrade-Ortega B, Valero S, Zainos A, Romo R, Rossi-Pool R. Contextual neural dynamics during time perception in the primate ventral premotor cortex. Proc Natl Acad Sci U S A 2025; 122:e2420356122. [PMID: 39913201 PMCID: PMC11831118 DOI: 10.1073/pnas.2420356122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2024] [Accepted: 01/07/2025] [Indexed: 02/19/2025] Open
Abstract
Understanding how time perception adapts to cognitive demands remains a significant challenge. In some contexts, the brain encodes time categorically (as "long" or "short"), while in others, it encodes precise time intervals on a continuous scale. Although the ventral premotor cortex (VPC) is known for its role in complex temporal processes, such as speech, its specific involvement in time estimation remains underexplored. In this study, we investigated how the VPC processes temporal information during a time interval comparison task (TICT) and a time interval categorization task (TCT) in primates. We found a notable heterogeneity in neuronal responses associated with time perception across both tasks. While most neurons responded during time interval presentation, a smaller subset retained this information during the working memory periods. Population-level analysis revealed distinct dynamics between tasks: In the TICT, population activity exhibited a linear and parametric relationship with interval duration, whereas in the TCT, neuronal activity diverged into two distinct dynamics corresponding to the interval categories. During delay periods, these categorical or parametric representations remained consistent within each task context. This contextual shift underscores the VPC's adaptive role in interval estimation and highlights how temporal representations are modulated by cognitive demands.
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Affiliation(s)
- Héctor Díaz
- Instituto de Fisiología Celular, Departamento de Neurociencia Cognitiva, Universidad Nacional Autónoma de México, Mexico City04510, Mexico
| | - Lucas Bayones
- Instituto de Fisiología Celular, Departamento de Neurociencia Cognitiva, Universidad Nacional Autónoma de México, Mexico City04510, Mexico
| | - Manuel Alvarez
- Instituto de Fisiología Celular, Departamento de Neurociencia Cognitiva, Universidad Nacional Autónoma de México, Mexico City04510, Mexico
| | - Bernardo Andrade-Ortega
- Instituto de Fisiología Celular, Departamento de Neurociencia Cognitiva, Universidad Nacional Autónoma de México, Mexico City04510, Mexico
| | - Sebastián Valero
- Instituto de Fisiología Celular, Departamento de Neurociencia Cognitiva, Universidad Nacional Autónoma de México, Mexico City04510, Mexico
| | - Antonio Zainos
- Instituto de Fisiología Celular, Departamento de Neurociencia Cognitiva, Universidad Nacional Autónoma de México, Mexico City04510, Mexico
| | | | - Román Rossi-Pool
- Instituto de Fisiología Celular, Departamento de Neurociencia Cognitiva, Universidad Nacional Autónoma de México, Mexico City04510, Mexico
- Centro de Ciencias de la Complejidad, Universidad Nacional Autónoma de México, Mexico City04510, Mexico
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4
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Kleyko D, Kymn CJ, Thomas A, Olshausen BA, Sommer FT, Frady EP. Principled neuromorphic reservoir computing. Nat Commun 2025; 16:640. [PMID: 39809739 PMCID: PMC11733134 DOI: 10.1038/s41467-025-55832-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2024] [Accepted: 12/20/2024] [Indexed: 01/16/2025] Open
Abstract
Reservoir computing advances the intriguing idea that a nonlinear recurrent neural circuit-the reservoir-can encode spatio-temporal input signals to enable efficient ways to perform tasks like classification or regression. However, recently the idea of a monolithic reservoir network that simultaneously buffers input signals and expands them into nonlinear features has been challenged. A representation scheme in which memory buffer and expansion into higher-order polynomial features can be configured separately has been shown to significantly outperform traditional reservoir computing in prediction of multivariate time-series. Here we propose a configurable neuromorphic representation scheme that provides competitive performance on prediction, but with significantly better scaling properties than directly materializing higher-order features as in prior work. Our approach combines the use of randomized representations from traditional reservoir computing with mathematical principles for approximating polynomial kernels via such representations. While the memory buffer can be realized with standard reservoir networks, computing higher-order features requires networks of 'Sigma-Pi' neurons, i.e., neurons that enable both summation as well as multiplication of inputs. Finally, we provide an implementation of the memory buffer and Sigma-Pi networks on Loihi 2, an existing neuromorphic hardware platform.
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Affiliation(s)
- Denis Kleyko
- Centre for Applied Autonomous Sensor Systems, Örebro University, Örebro, Sweden.
- Intelligent Systems Lab, RISE Research Institutes of Sweden, Kista, Sweden.
| | - Christopher J Kymn
- Redwood Center for Theoretical Neuroscience, University of California, Berkeley, CA, USA
| | - Anthony Thomas
- Redwood Center for Theoretical Neuroscience, University of California, Berkeley, CA, USA
- Electrical and Computer Engineering, University of California, Davis, CA, USA
| | - Bruno A Olshausen
- Redwood Center for Theoretical Neuroscience, University of California, Berkeley, CA, USA
| | - Friedrich T Sommer
- Redwood Center for Theoretical Neuroscience, University of California, Berkeley, CA, USA.
- Neuromorphic Computing Lab, Intel, Santa Clara, CA, USA.
| | - E Paxon Frady
- Neuromorphic Computing Lab, Intel, Santa Clara, CA, USA
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5
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Vidal-Saez MS, Vilarroya O, Garcia-Ojalvo J. Biological computation through recurrence. Biochem Biophys Res Commun 2024; 728:150301. [PMID: 38971000 DOI: 10.1016/j.bbrc.2024.150301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2024] [Accepted: 05/12/2024] [Indexed: 07/08/2024]
Abstract
One of the defining features of living systems is their adaptability to changing environmental conditions. This requires organisms to extract temporal and spatial features of their environment, and use that information to compute the appropriate response. In the last two decades, a growing body of work, mainly coming from the machine learning and computational neuroscience fields, has shown that such complex information processing can be performed by recurrent networks. Temporal computations arise in these networks through the interplay between the external stimuli and the network's internal state. In this article we review our current understanding of how recurrent networks can be used by biological systems, from cells to brains, for complex information processing. Rather than focusing on sophisticated, artificial recurrent architectures such as long short-term memory (LSTM) networks, here we concentrate on simpler network structures and learning algorithms that can be expected to have been found by evolution. We also review studies showing evidence of naturally occurring recurrent networks in living organisms. Lastly, we discuss some relevant evolutionary aspects concerning the emergence of this natural computation paradigm.
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Affiliation(s)
- María Sol Vidal-Saez
- Department of Medicine and Life Sciences, Universitat Pompeu Fabra, Dr Aiguader 88, 08003 Barcelona, Spain
| | - Oscar Vilarroya
- Department of Psychiatry and Legal Medicine, Universitat Autònoma de Barcelona, 08193, Cerdanyola del Vallès, Spain; Hospital del Mar Medical Research Institute (IMIM), Dr Aiguader 88, 08003, Barcelona, Spain
| | - Jordi Garcia-Ojalvo
- Department of Medicine and Life Sciences, Universitat Pompeu Fabra, Dr Aiguader 88, 08003 Barcelona, Spain.
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6
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Correa A, Ponzi A, Calderón VM, Migliore R. Pathological cell assembly dynamics in a striatal MSN network model. Front Comput Neurosci 2024; 18:1410335. [PMID: 38903730 PMCID: PMC11188713 DOI: 10.3389/fncom.2024.1410335] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2024] [Accepted: 05/15/2024] [Indexed: 06/22/2024] Open
Abstract
Under normal conditions the principal cells of the striatum, medium spiny neurons (MSNs), show structured cell assembly activity patterns which alternate sequentially over exceedingly long timescales of many minutes. It is important to understand this activity since it is characteristically disrupted in multiple pathologies, such as Parkinson's disease and dyskinesia, and thought to be caused by alterations in the MSN to MSN lateral inhibitory connections and in the strength and distribution of cortical excitation to MSNs. To understand how these long timescales arise we extended a previous network model of MSN cells to include synapses with short-term plasticity, with parameters taken from a recent detailed striatal connectome study. We first confirmed the presence of sequentially switching cell clusters using the non-linear dimensionality reduction technique, Uniform Manifold Approximation and Projection (UMAP). We found that the network could generate non-stationary activity patterns varying extremely slowly on the order of minutes under biologically realistic conditions. Next we used Simulation Based Inference (SBI) to train a deep net to map features of the MSN network generated cell assembly activity to MSN network parameters. We used the trained SBI model to estimate MSN network parameters from ex-vivo brain slice calcium imaging data. We found that best fit network parameters were very close to their physiologically observed values. On the other hand network parameters estimated from Parkinsonian, decorticated and dyskinetic ex-vivo slice preparations were different. Our work may provide a pipeline for diagnosis of basal ganglia pathology from spiking data as well as for the design pharmacological treatments.
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Affiliation(s)
- Astrid Correa
- Institute of Biophysics, National Research Council, Palermo, Italy
| | - Adam Ponzi
- Institute of Biophysics, National Research Council, Palermo, Italy
- Center for Human Nature, Artificial Intelligence, and Neuroscience, Hokkaido University, Sapporo, Japan
| | - Vladimir M. Calderón
- Department of Developmental Neurobiology and Neurophysiology, Neurobiology Institute, National Autonomous University of Mexico, Querétaro, Mexico
| | - Rosanna Migliore
- Institute of Biophysics, National Research Council, Palermo, Italy
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7
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Liu B, Buonomano DV. Ex Vivo Cortical Circuits Learn to Predict and Spontaneously Replay Temporal Patterns. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.05.30.596702. [PMID: 38853859 PMCID: PMC11160783 DOI: 10.1101/2024.05.30.596702] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2024]
Abstract
It has been proposed that prediction and timing are computational primitives of neocortical microcircuits, specifically, that neural mechanisms are in place to allow neocortical circuits to autonomously learn the temporal structure of external stimuli and generate internal predictions. To test this hypothesis, we trained cortical organotypic slices on two specific temporal patterns using dual-optical stimulation. After 24-hours of training, whole-cell recordings revealed network dynamics consistent with training-specific timed prediction. Unexpectedly, there was replay of the learned temporal structure during spontaneous activity. Furthermore, some neurons exhibited timed prediction errors. Mechanistically our results indicate that learning relied in part on asymmetric connectivity between distinct neuronal ensembles with temporally-ordered activation. These findings further suggest that local cortical microcircuits are intrinsically capable of learning temporal information and generating predictions, and that the learning rules underlying temporal learning and spontaneous replay can be intrinsic to local cortical microcircuits and not necessarily dependent on top-down interactions.
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8
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Zhou S, Buonomano DV. Unified control of temporal and spatial scales of sensorimotor behavior through neuromodulation of short-term synaptic plasticity. SCIENCE ADVANCES 2024; 10:eadk7257. [PMID: 38701208 DOI: 10.1126/sciadv.adk7257] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Accepted: 04/03/2024] [Indexed: 05/05/2024]
Abstract
Neuromodulators have been shown to alter the temporal profile of short-term synaptic plasticity (STP); however, the computational function of this neuromodulation remains unexplored. Here, we propose that the neuromodulation of STP provides a general mechanism to scale neural dynamics and motor outputs in time and space. We trained recurrent neural networks that incorporated STP to produce complex motor trajectories-handwritten digits-with different temporal (speed) and spatial (size) scales. Neuromodulation of STP produced temporal and spatial scaling of the learned dynamics and enhanced temporal or spatial generalization compared to standard training of the synaptic weights in the absence of STP. The model also accounted for the results of two experimental studies involving flexible sensorimotor timing. Neuromodulation of STP provides a unified and biologically plausible mechanism to control the temporal and spatial scales of neural dynamics and sensorimotor behaviors.
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Affiliation(s)
- Shanglin Zhou
- Institute for Translational Brain Research, Fudan University, Shanghai, China
- State Key Laboratory of Medical Neurobiology, Fudan University, Shanghai, China
- MOE Frontiers Center for Brain Science, Fudan University, Shanghai, China
- Zhongshan Hospital, Fudan University, Shanghai, China
| | - Dean V Buonomano
- Department of Neurobiology, University of California, Los Angeles, Los Angeles, CA, USA
- Department of Psychology, University of California, Los Angeles, Los Angeles, CA, USA
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9
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White PA. The perceptual timescape: Perceptual history on the sub-second scale. Cogn Psychol 2024; 149:101643. [PMID: 38452720 DOI: 10.1016/j.cogpsych.2024.101643] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Revised: 02/27/2024] [Accepted: 02/28/2024] [Indexed: 03/09/2024]
Abstract
There is a high-capacity store of brief time span (∼1000 ms) which information enters from perceptual processing, often called iconic memory or sensory memory. It is proposed that a main function of this store is to hold recent perceptual information in a temporally segregated representation, named the perceptual timescape. The perceptual timescape is a continually active representation of change and continuity over time that endows the perceived present with a perceived history. This is accomplished primarily by two kinds of time marking information: time distance information, which marks all items of information in the perceptual timescape according to how far in the past they occurred, and ordinal temporal information, which organises items of information in terms of their temporal order. Added to that is information about connectivity of perceptual objects over time. These kinds of information connect individual items over a brief span of time so as to represent change, persistence, and continuity over time. It is argued that there is a one-way street of information flow from perceptual processing either to the perceived present or directly into the perceptual timescape, and thence to working memory. Consistent with that, the information structure of the perceptual timescape supports postdictive reinterpretations of recent perceptual information. Temporal integration on a time scale of hundreds of milliseconds takes place in perceptual processing and does not draw on information in the perceptual timescape, which is concerned with temporal segregation, not integration.
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Affiliation(s)
- Peter A White
- School of Psychology, Cardiff University, Tower Building, Park Place, Cardiff, Wales CF10 3YG, United Kingdom.
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10
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Beninger J, Rossbroich J, Tóth K, Naud R. Functional subtypes of synaptic dynamics in mouse and human. Cell Rep 2024; 43:113785. [PMID: 38363673 DOI: 10.1016/j.celrep.2024.113785] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Revised: 12/08/2023] [Accepted: 01/27/2024] [Indexed: 02/18/2024] Open
Abstract
Synapses preferentially respond to particular temporal patterns of activity with a large degree of heterogeneity that is informally or tacitly separated into classes. Yet, the precise number and properties of such classes are unclear. Do they exist on a continuum and, if so, when is it appropriate to divide that continuum into functional regions? In a large dataset of glutamatergic cortical connections, we perform model-based characterization to infer the number and characteristics of functionally distinct subtypes of synaptic dynamics. In rodent data, we find five clusters that partially converge with transgenic-associated subtypes. Strikingly, the application of the same clustering method in human data infers a highly similar number of clusters, supportive of stable clustering. This nuanced dictionary of functional subtypes shapes the heterogeneity of cortical synaptic dynamics and provides a lens into the basic motifs of information transmission in the brain.
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Affiliation(s)
- John Beninger
- Center for Neural Dynamics and Artificial Intelligence, University of Ottawa, Ottawa, ON K1H 8M5, Canada; uOttawa Brain and Mind Research Institute, University of Ottawa, Ottawa, ON K1H 8M5, Canada; Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, ON K1H 8M5, Canada
| | - Julian Rossbroich
- Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland; Faculty of Science, University of Basel, Basel, Switzerland
| | - Katalin Tóth
- Center for Neural Dynamics and Artificial Intelligence, University of Ottawa, Ottawa, ON K1H 8M5, Canada; uOttawa Brain and Mind Research Institute, University of Ottawa, Ottawa, ON K1H 8M5, Canada; Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, ON K1H 8M5, Canada
| | - Richard Naud
- Center for Neural Dynamics and Artificial Intelligence, University of Ottawa, Ottawa, ON K1H 8M5, Canada; uOttawa Brain and Mind Research Institute, University of Ottawa, Ottawa, ON K1H 8M5, Canada; Department of Cellular and Molecular Medicine, University of Ottawa, Ottawa, ON K1H 8M5, Canada; Department of Physics, University of Ottawa, Ottawa, ON K1H 8M5, Canada.
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11
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Balcı F, Simen P. Neurocomputational Models of Interval Timing: Seeing the Forest for the Trees. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2024; 1455:51-78. [PMID: 38918346 DOI: 10.1007/978-3-031-60183-5_4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/27/2024]
Abstract
Extracting temporal regularities and relations from experience/observation is critical for organisms' adaptiveness (communication, foraging, predation, prediction) in their ecological niches. Therefore, it is not surprising that the internal clock that enables the perception of seconds-to-minutes-long intervals (interval timing) is evolutionarily well-preserved across many species of animals. This comparative claim is primarily supported by the fact that the timing behavior of many vertebrates exhibits common statistical signatures (e.g., on-average accuracy, scalar variability, positive skew). These ubiquitous statistical features of timing behaviors serve as empirical benchmarks for modelers in their efforts to unravel the processing dynamics of the internal clock (namely answering how internal clock "ticks"). In this chapter, we introduce prominent (neuro)computational approaches to modeling interval timing at a level that can be understood by general audience. These models include Treisman's pacemaker accumulator model, the information processing variant of scalar expectancy theory, the striatal beat frequency model, behavioral expectancy theory, the learning to time model, the time-adaptive opponent Poisson drift-diffusion model, time cell models, and neural trajectory models. Crucially, we discuss these models within an overarching conceptual framework that categorizes different models as threshold vs. clock-adaptive models and as dedicated clock/ramping vs. emergent time/population code models.
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Affiliation(s)
- Fuat Balcı
- Department of Biological Sciences, University of Manitoba, Winnipeg, MB, Canada.
| | - Patrick Simen
- Department of Neuroscience, Oberlin College, Oberlin, OH, USA
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12
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Buonomano DV, Buzsáki G, Davachi L, Nobre AC. Time for Memories. J Neurosci 2023; 43:7565-7574. [PMID: 37940593 PMCID: PMC10634580 DOI: 10.1523/jneurosci.1430-23.2023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Revised: 08/22/2023] [Accepted: 08/25/2023] [Indexed: 11/10/2023] Open
Abstract
The ability to store information about the past to dynamically predict and prepare for the future is among the most fundamental tasks the brain performs. To date, the problems of understanding how the brain stores and organizes information about the past (memory) and how the brain represents and processes temporal information for adaptive behavior have generally been studied as distinct cognitive functions. This Symposium explores the inherent link between memory and temporal cognition, as well as the potential shared neural mechanisms between them. We suggest that working memory and implicit timing are interconnected and may share overlapping neural mechanisms. Additionally, we explore how temporal structure is encoded in associative and episodic memory and, conversely, the influences of episodic memory on subsequent temporal anticipation and the perception of time. We suggest that neural sequences provide a general computational motif that contributes to timing and working memory, as well as the spatiotemporal coding and recall of episodes.
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Affiliation(s)
- Dean V Buonomano
- Department of Neurobiology, University of California, Los Angeles, California 90095
- Department of Psychology, University of California, Los Angeles, Los Angeles, California 90095
- Integrative Center for Learning and Memory, UCLA, Los Angeles, California 90025
| | - György Buzsáki
- Neuroscience Institute and Department of Neurology, NYU Grossman School of Medicine, New York University, New York, New York 10016
- Center for Neural Science, New York University, New York, New York 10003
| | - Lila Davachi
- Department of Psychology, Columbia University, New York, New York 10027
- Center for Clinical Research, Nathan S. Kline Institute for Psychiatric Research, Orangeburg, New York 10962
| | - Anna C Nobre
- Department of Experimental Psychology, University of Oxford, Oxford OX2 6GG, United Kingdom
- Oxford Centre for Human Brain Activity, Wellcome Centre for Integrative Neuroimaging, Department of Psychiatry, University of Oxford, Oxford OX3 7JX, United Kingdom
- Department of Psychology, Yale University, New Haven, Connecticut 06510
- Wu Tsai Center for Neurocognition and Behavior, Wu Tsai Institute, Yale University, New Haven, Connecticut 06510
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13
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Monteiro T, Rodrigues FS, Pexirra M, Cruz BF, Gonçalves AI, Rueda-Orozco PE, Paton JJ. Using temperature to analyze the neural basis of a time-based decision. Nat Neurosci 2023; 26:1407-1416. [PMID: 37443279 DOI: 10.1038/s41593-023-01378-5] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2020] [Accepted: 06/12/2023] [Indexed: 07/15/2023]
Abstract
The basal ganglia are thought to contribute to decision-making and motor control. These functions are critically dependent on timing information, which can be extracted from the evolving state of neural populations in their main input structure, the striatum. However, it is debated whether striatal activity underlies latent, dynamic decision processes or kinematics of overt movement. Here, we measured the impact of temperature on striatal population activity and the behavior of rats, and compared the observed effects with neural activity and behavior collected in multiple versions of a temporal categorization task. Cooling caused dilation, and warming contraction, of both neural activity and patterns of judgment in time, mimicking endogenous decision-related variability in striatal activity. However, temperature did not similarly affect movement kinematics. These data provide compelling evidence that the timecourse of evolving striatal activity dictates the speed of a latent process that is used to guide choices, but not continuous motor control. More broadly, they establish temporal scaling of population activity as a likely neural basis for variability in timing behavior.
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Affiliation(s)
- Tiago Monteiro
- Neuroscience Programme, Champalimaud Foundation, Lisbon, Portugal
- Department of Biology, University of Oxford, Oxford, UK
| | | | - Margarida Pexirra
- Neuroscience Programme, Champalimaud Foundation, Lisbon, Portugal
- Sainsbury Wellcome Centre for Neural Circuits and Behaviour, University College London, London, UK
| | - Bruno F Cruz
- Neuroscience Programme, Champalimaud Foundation, Lisbon, Portugal
- NeuroGEARS Ltd., London, UK
| | - Ana I Gonçalves
- Neuroscience Programme, Champalimaud Foundation, Lisbon, Portugal
| | | | - Joseph J Paton
- Neuroscience Programme, Champalimaud Foundation, Lisbon, Portugal.
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14
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Jiang Z, Xu J, Zhang T, Poo MM, Xu B. Origin of the efficiency of spike timing-based neural computation for processing temporal information. Neural Netw 2023; 160:84-96. [PMID: 36621172 DOI: 10.1016/j.neunet.2022.12.017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Revised: 10/12/2022] [Accepted: 12/21/2022] [Indexed: 12/28/2022]
Abstract
Although the advantage of spike timing-based over rate-based network computation has been recognized, the underlying mechanism remains unclear. Using Tempotron and Perceptron as elementary neural models, we examined the intrinsic difference between spike timing-based and rate-based computations. For more direct comparison, we modified Tempotron computation into rate-based computation with the retention of some temporal information. Previous studies have shown that spike timing-based computation are computationally more powerful than rate-based computation in terms of the number of computational units required and the capability in classifying random patterns. Our study showed that spike timing-based and rate-based Tempotron computations provided similar capability in classifying random spike patterns, as well as in text sentiment classification and spam text detection. However, spike timing-based computation is superior in performing a task involving discriminating forward vs. reverse sequence of events, i.e., information mainly temporal in nature. Further studies revealed that this superiority required the asymmetry in the profile of the postsynaptic potential (PSP), and that temporal sequence information was converted to biased spatial distribution of synaptic weight modifications during learning. Thus, the intrinsic PSP asymmetry is a mechanistic basis for the high efficiency of spike timing-based computation for processing temporal information.
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Affiliation(s)
- Zhiwei Jiang
- Institute of Neuroscience, Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China; University of Chinese Academy of Sciences, Beijing 100190, China
| | - Jiaming Xu
- Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; University of Chinese Academy of Sciences, Beijing 100190, China
| | - Tielin Zhang
- Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; University of Chinese Academy of Sciences, Beijing 100190, China
| | - Mu-Ming Poo
- Institute of Neuroscience, Center for Excellence in Brain Science and Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China; University of Chinese Academy of Sciences, Beijing 100190, China; Shanghai Center for Brain Science and Brain-Inspired Intelligence Technology, Lingang Laboratory, Shanghai 200031, China.
| | - Bo Xu
- Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; University of Chinese Academy of Sciences, Beijing 100190, China.
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15
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White PA. Time marking in perception. Neurosci Biobehav Rev 2023; 146:105043. [PMID: 36642288 DOI: 10.1016/j.neubiorev.2023.105043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2022] [Revised: 12/21/2022] [Accepted: 01/10/2023] [Indexed: 01/15/2023]
Abstract
Several authors have proposed that perceptual information carries labels that identify temporal features, including time of occurrence, ordinal temporal relations, and brief durations. These labels serve to locate and organise perceptual objects, features, and events in time. In some proposals time marking has local, specific functions such as synchronisation of different features in perceptual processing. In other proposals time marking has general significance and is responsible for rendering perceptual experience temporally coherent, just as various forms of spatial information render the visual environment spatially coherent. These proposals, which all concern time marking on the millisecond time scale, are reviewed. It is concluded that time marking is vital to the construction of a multisensory perceptual world in which things are orderly with respect to both space and time, but that much more research is needed to ascertain its functions in perception and its neurophysiological foundations.
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Affiliation(s)
- Peter A White
- School of Psychology, Cardiff University, Tower Building, Park Place, Cardiff CF10 3YG, Wales, UK.
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16
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Asaoka R. Stimulus (dis)similarity can modify the effect of a task-irrelevant sandwiching stimulus on the perceived duration of brief visual stimuli. Exp Brain Res 2023; 241:889-903. [PMID: 36795125 DOI: 10.1007/s00221-023-06564-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2022] [Accepted: 01/21/2023] [Indexed: 02/17/2023]
Abstract
The perceived duration of a target visual stimulus is shorter when a brief non-target visual stimulus precedes and trails the target than when it appears alone. This time compression requires spatiotemporal proximity of the target and non-target stimuli, which is one of the perceptual grouping rules. The present study examined whether and how another grouping rule, stimulus (dis)similarity, modulated this effect. In Experiment 1, time compression occurred only when the preceding and trailing stimuli (black-white checkerboard) were dissimilar from the target (unfilled round or triangle) with spatiotemporal proximity. In contrast, it was reduced when the preceding or trailing stimuli (filled rounds or triangles) were similar to the target. Experiment 2 revealed time compression with dissimilar stimuli, independent of the intensity or saliency of the target and non-target stimuli. Experiment 3 replicated the findings of Experiment 1 by manipulating the luminance similarity between target and non-target stimuli. Furthermore, time dilation occurred when the non-target stimuli were indistinguishable from the target stimuli. These results indicate that stimulus dissimilarity with spatiotemporal proximity induces time compression, whereas stimulus similarity with spatiotemporal proximity does not. These findings were discussed in relation to the neural readout model.
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Affiliation(s)
- Riku Asaoka
- Department of Psychology, Chiba University, 1-33 Yayoi-cho, Inage, Chiba, 263-8522, Japan. .,Japan Society for the Promotion of Science, Tokyo, Japan. .,Graduate School of Arts and Letters, Tohoku University, 27-1 Kawauchi, Aoba-ku, Sendai, Miyagi, 980-8576, Japan. .,Faculty of Human Sciences, Kanazawa University, Kakuma, Kanazawa, Ishikawa, 920-1192, Japan.
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17
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Barri A, Wiechert MT, Jazayeri M, DiGregorio DA. Synaptic basis of a sub-second representation of time in a neural circuit model. Nat Commun 2022; 13:7902. [PMID: 36550115 PMCID: PMC9780315 DOI: 10.1038/s41467-022-35395-y] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Accepted: 11/29/2022] [Indexed: 12/24/2022] Open
Abstract
Temporal sequences of neural activity are essential for driving well-timed behaviors, but the underlying cellular and circuit mechanisms remain elusive. We leveraged the well-defined architecture of the cerebellum, a brain region known to support temporally precise actions, to explore theoretically whether the experimentally observed diversity of short-term synaptic plasticity (STP) at the input layer could generate neural dynamics sufficient for sub-second temporal learning. A cerebellar circuit model equipped with dynamic synapses produced a diverse set of transient granule cell firing patterns that provided a temporal basis set for learning precisely timed pauses in Purkinje cell activity during simulated delay eyelid conditioning and Bayesian interval estimation. The learning performance across time intervals was influenced by the temporal bandwidth of the temporal basis, which was determined by the input layer synaptic properties. The ubiquity of STP throughout the brain positions it as a general, tunable cellular mechanism for sculpting neural dynamics and fine-tuning behavior.
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Affiliation(s)
- A. Barri
- grid.508487.60000 0004 7885 7602Institut Pasteur, Université Paris Cité, Synapse and Circuit Dynamics Laboratory, CNRS UMR 3571 Paris, France
| | - M. T. Wiechert
- grid.508487.60000 0004 7885 7602Institut Pasteur, Université Paris Cité, Synapse and Circuit Dynamics Laboratory, CNRS UMR 3571 Paris, France
| | - M. Jazayeri
- grid.116068.80000 0001 2341 2786McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA USA ,grid.116068.80000 0001 2341 2786Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA USA
| | - D. A. DiGregorio
- grid.508487.60000 0004 7885 7602Institut Pasteur, Université Paris Cité, Synapse and Circuit Dynamics Laboratory, CNRS UMR 3571 Paris, France
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18
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De Corte BJ, Akdoğan B, Balsam PD. Temporal scaling and computing time in neural circuits: Should we stop watching the clock and look for its gears? Front Behav Neurosci 2022; 16:1022713. [PMID: 36570701 PMCID: PMC9773401 DOI: 10.3389/fnbeh.2022.1022713] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2022] [Accepted: 10/31/2022] [Indexed: 12/13/2022] Open
Abstract
Timing underlies a variety of functions, from walking to perceiving causality. Neural timing models typically fall into one of two categories-"ramping" and "population-clock" theories. According to ramping models, individual neurons track time by gradually increasing or decreasing their activity as an event approaches. To time different intervals, ramping neurons adjust their slopes, ramping steeply for short intervals and vice versa. In contrast, according to "population-clock" models, multiple neurons track time as a group, and each neuron can fire nonlinearly. As each neuron changes its rate at each point in time, a distinct pattern of activity emerges across the population. To time different intervals, the brain learns the population patterns that coincide with key events. Both model categories have empirical support. However, they often differ in plausibility when applied to certain behavioral effects. Specifically, behavioral data indicate that the timing system has a rich computational capacity, allowing observers to spontaneously compute novel intervals from previously learned ones. In population-clock theories, population patterns map to time arbitrarily, making it difficult to explain how different patterns can be computationally combined. Ramping models are viewed as more plausible, assuming upstream circuits can set the slope of ramping neurons according to a given computation. Critically, recent studies suggest that neurons with nonlinear firing profiles often scale to time different intervals-compressing for shorter intervals and stretching for longer ones. This "temporal scaling" effect has led to a hybrid-theory where, like a population-clock model, population patterns encode time, yet like a ramping neuron adjusting its slope, the speed of each neuron's firing adapts to different intervals. Here, we argue that these "relative" population-clock models are as computationally plausible as ramping theories, viewing population-speed and ramp-slope adjustments as equivalent. Therefore, we view identifying these "speed-control" circuits as a key direction for evaluating how the timing system performs computations. Furthermore, temporal scaling highlights that a key distinction between different neural models is whether they propose an absolute or relative time-representation. However, we note that several behavioral studies suggest the brain processes both scales, cautioning against a dichotomy.
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Affiliation(s)
- Benjamin J. De Corte
- Department of Psychology, Columbia University, New York, NY, United States
- Division of Developmental Neuroscience, New York State Psychiatric Institute, New York, NY, United States
| | - Başak Akdoğan
- Department of Psychology, Columbia University, New York, NY, United States
- Division of Developmental Neuroscience, New York State Psychiatric Institute, New York, NY, United States
| | - Peter D. Balsam
- Department of Psychology, Columbia University, New York, NY, United States
- Division of Developmental Neuroscience, New York State Psychiatric Institute, New York, NY, United States
- Department of Neuroscience and Behavior, Barnard College, New York, NY, United States
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19
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Scleidorovich P, Weitzenfeld A, Fellous JM, Dominey PF. Integration of velocity-dependent spatio-temporal structure of place cell activation during navigation in a reservoir model of prefrontal cortex. BIOLOGICAL CYBERNETICS 2022; 116:585-610. [PMID: 36222887 DOI: 10.1007/s00422-022-00945-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2022] [Accepted: 09/10/2022] [Indexed: 06/16/2023]
Abstract
Sequential behavior unfolds both in space and in time. The same spatial trajectory can be realized in different manners in the same overall time by changing instantaneous speeds. The current research investigates how speed profiles might be given behavioral significance and how cortical networks might encode this information. We first demonstrate that rats can associate different speed patterns on the same trajectory with distinct behavioral choices. In this novel experimental paradigm, rats follow a small baited robot in a large megaspace environment where the rat's speed is precisely controlled by the robot's speed. Based on this proof of concept and research showing that recurrent reservoir networks are ideal for representing spatio-temporal structures, we then test reservoir networks in simulated navigation contexts and demonstrate they can discriminate between traversals of the same path with identical durations but different speed profiles. We then test the networks in an embodied robotic setup, where we use place cell representations from physically navigating robots as input and again successfully discriminate between traversals. To demonstrate that this capability is inherent to recurrent networks, we compared the model against simple linear integrators. Interestingly, although the linear integrators could also perform the speed profile discrimination, a clear difference emerged when examining information coding in both models. Reservoir neurons displayed a form of statistical mixed selectivity as a complex interaction between spatial location and speed that was not as abundant in the linear integrators. This mixed selectivity is characteristic of cortex and reservoirs and allows us to generate specific predictions about the neural activity that will be recorded in rat cortex in future experiments.
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Affiliation(s)
- Pablo Scleidorovich
- Department of Computer Science and Engineering, University of South Florida, Tampa, USA
| | - Alfredo Weitzenfeld
- Department of Computer Science and Engineering, University of South Florida, Tampa, USA
| | - Jean-Marc Fellous
- Departments of Psychology and Biomedical Engineering, University of Arizona, Tucson, USA
| | - Peter Ford Dominey
- INSERM UMR1093-CAPS, Université Bourgogne Franche-Comté, UFR Des Sciences du Sport, 21000, Dijon, France.
- Robot Cognition Laboratory, Institute Marey, Dijon, France.
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20
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Chinoy RB, Tanwar A, Buonomano DV. A Recurrent Neural Network Model Accounts for Both Timing and Working Memory Components of an Interval Discrimination Task. TIMING & TIME PERCEPTION 2022. [DOI: 10.1163/22134468-bja10058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
Abstract
Interval discrimination is of fundamental importance to many forms of sensory processing, including speech and music. Standard interval discrimination tasks require comparing two intervals separated in time, and thus include both working memory (WM) and timing components. Models of interval discrimination invoke separate circuits for the timing and WM components. Here we examine if, in principle, the same recurrent neural network can implement both. Using human psychophysics, we first explored the role of the WM component by varying the interstimulus delay. Consistent with previous studies, discrimination was significantly worse for a 250 ms delay, compared to 750 and 1500 ms delays, suggesting that the first interval is stably stored in WM for longer delays. We next successfully trained a recurrent neural network (RNN) on the task, demonstrating that the same network can implement both the timing and WM components. Many units in the RNN were tuned to specific intervals during the sensory epoch, and others encoded the first interval during the delay period. Overall, the encoding strategy was consistent with the notion of mixed selectivity. Units generally encoded more interval information during the sensory epoch than in the delay period, reflecting categorical encoding of short versus long in WM, rather than encoding of the specific interval. Our results demonstrate that, in contrast to standard models of interval discrimination that invoke a separate memory module, the same network can, in principle, solve the timing, WM, and comparison components of an interval discrimination task.
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Affiliation(s)
- Rehan B. Chinoy
- Departments of Neurobiology and Psychology, Brain Research Institute, and Integrative Center for Learning and Memory, University of California, Los Angeles, CA 90095–1763, USA
| | - Ashita Tanwar
- Departments of Neurobiology and Psychology, Brain Research Institute, and Integrative Center for Learning and Memory, University of California, Los Angeles, CA 90095–1763, USA
| | - Dean V. Buonomano
- Departments of Neurobiology and Psychology, Brain Research Institute, and Integrative Center for Learning and Memory, University of California, Los Angeles, CA 90095–1763, USA
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21
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Tsao A, Yousefzadeh SA, Meck WH, Moser MB, Moser EI. The neural bases for timing of durations. Nat Rev Neurosci 2022; 23:646-665. [PMID: 36097049 DOI: 10.1038/s41583-022-00623-3] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/19/2022] [Indexed: 11/10/2022]
Abstract
Durations are defined by a beginning and an end, and a major distinction is drawn between durations that start in the present and end in the future ('prospective timing') and durations that start in the past and end either in the past or the present ('retrospective timing'). Different psychological processes are thought to be engaged in each of these cases. The former is thought to engage a clock-like mechanism that accurately tracks the continuing passage of time, whereas the latter is thought to engage a reconstructive process that utilizes both temporal and non-temporal information from the memory of past events. We propose that, from a biological perspective, these two forms of duration 'estimation' are supported by computational processes that are both reliant on population state dynamics but are nevertheless distinct. Prospective timing is effectively carried out in a single step where the ongoing dynamics of population activity directly serve as the computation of duration, whereas retrospective timing is carried out in two steps: the initial generation of population state dynamics through the process of event segmentation and the subsequent computation of duration utilizing the memory of those dynamics.
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Affiliation(s)
- Albert Tsao
- Department of Biology, Stanford University, Stanford, CA, USA.
| | | | - Warren H Meck
- Department of Psychology and Neuroscience, Duke University, Durham, NC, USA
| | - May-Britt Moser
- Centre for Neural Computation, Kavli Institute for Systems Neuroscience, Norwegian University of Science and Technology, Trondheim, Norway
| | - Edvard I Moser
- Centre for Neural Computation, Kavli Institute for Systems Neuroscience, Norwegian University of Science and Technology, Trondheim, Norway.
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22
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Ponzi A, Wickens J. Ramping activity in the striatum. Front Comput Neurosci 2022; 16:902741. [PMID: 35978564 PMCID: PMC9376361 DOI: 10.3389/fncom.2022.902741] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2022] [Accepted: 07/05/2022] [Indexed: 11/13/2022] Open
Abstract
Control of the timing of behavior is thought to require the basal ganglia (BG) and BG pathologies impair performance in timing tasks. Temporal interval discrimination depends on the ramping activity of medium spiny neurons (MSN) in the main BG input structure, the striatum, but the underlying mechanisms driving this activity are unclear. Here, we combine an MSN dynamical network model with an action selection system applied to an interval discrimination task. We find that when network parameters are appropriate for the striatum so that slowly fluctuating marginally stable dynamics are intrinsically generated, up and down ramping populations naturally emerge which enable significantly above chance task performance. We show that emergent population activity is in very good agreement with empirical studies and discuss how MSN network dysfunction in disease may alter temporal perception.
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Affiliation(s)
- Adam Ponzi
- Institute of Biophysics, Italian National Research Council, Palermo, Italy
- *Correspondence: Adam Ponzi
| | - Jeff Wickens
- Neurobiology Research Unit, Okinawa Institute of Science and Technology (OIST), Okinawa, Japan
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23
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Mill RD, Hamilton JL, Winfield EC, Lalta N, Chen RH, Cole MW. Network modeling of dynamic brain interactions predicts emergence of neural information that supports human cognitive behavior. PLoS Biol 2022; 20:e3001686. [PMID: 35980898 PMCID: PMC9387855 DOI: 10.1371/journal.pbio.3001686] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2021] [Accepted: 05/24/2022] [Indexed: 11/21/2022] Open
Abstract
How cognitive task behavior is generated by brain network interactions is a central question in neuroscience. Answering this question calls for the development of novel analysis tools that can firstly capture neural signatures of task information with high spatial and temporal precision (the "where and when") and then allow for empirical testing of alternative network models of brain function that link information to behavior (the "how"). We outline a novel network modeling approach suited to this purpose that is applied to noninvasive functional neuroimaging data in humans. We first dynamically decoded the spatiotemporal signatures of task information in the human brain by combining MRI-individualized source electroencephalography (EEG) with multivariate pattern analysis (MVPA). A newly developed network modeling approach-dynamic activity flow modeling-then simulated the flow of task-evoked activity over more causally interpretable (relative to standard functional connectivity [FC] approaches) resting-state functional connections (dynamic, lagged, direct, and directional). We demonstrate the utility of this modeling approach by applying it to elucidate network processes underlying sensory-motor information flow in the brain, revealing accurate predictions of empirical response information dynamics underlying behavior. Extending the model toward simulating network lesions suggested a role for the cognitive control networks (CCNs) as primary drivers of response information flow, transitioning from early dorsal attention network-dominated sensory-to-response transformation to later collaborative CCN engagement during response selection. These results demonstrate the utility of the dynamic activity flow modeling approach in identifying the generative network processes underlying neurocognitive phenomena.
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Affiliation(s)
- Ravi D. Mill
- Center for Molecular and Behavioral Neuroscience, Rutgers University, Newark, New Jersey, United States of America
| | - Julia L. Hamilton
- Center for Molecular and Behavioral Neuroscience, Rutgers University, Newark, New Jersey, United States of America
| | - Emily C. Winfield
- Center for Molecular and Behavioral Neuroscience, Rutgers University, Newark, New Jersey, United States of America
| | - Nicole Lalta
- Center for Molecular and Behavioral Neuroscience, Rutgers University, Newark, New Jersey, United States of America
| | - Richard H. Chen
- Center for Molecular and Behavioral Neuroscience, Rutgers University, Newark, New Jersey, United States of America
- Behavioral and Neural Sciences Graduate Program, Rutgers University, Newark, New Jersey, United States of America
| | - Michael W. Cole
- Center for Molecular and Behavioral Neuroscience, Rutgers University, Newark, New Jersey, United States of America
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24
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Ross JM, Balasubramaniam R. Time Perception for Musical Rhythms: Sensorimotor Perspectives on Entrainment, Simulation, and Prediction. Front Integr Neurosci 2022; 16:916220. [PMID: 35865808 PMCID: PMC9294366 DOI: 10.3389/fnint.2022.916220] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2022] [Accepted: 06/16/2022] [Indexed: 11/19/2022] Open
Abstract
Neural mechanisms supporting time perception in continuously changing sensory environments may be relevant to a broader understanding of how the human brain utilizes time in cognition and action. In this review, we describe current theories of sensorimotor engagement in the support of subsecond timing. We focus on musical timing due to the extensive literature surrounding movement with and perception of musical rhythms. First, we define commonly used but ambiguous concepts including neural entrainment, simulation, and prediction in the context of musical timing. Next, we summarize the literature on sensorimotor timing during perception and performance and describe current theories of sensorimotor engagement in the support of subsecond timing. We review the evidence supporting that sensorimotor engagement is critical in accurate time perception. Finally, potential clinical implications for a sensorimotor perspective of timing are highlighted.
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Affiliation(s)
- Jessica M. Ross
- Veterans Affairs Palo Alto Healthcare System and the Sierra Pacific Mental Illness, Research, Education, and Clinical Center, Palo Alto, CA, United States
- Department of Psychiatry and Behavioral Sciences, Stanford University Medical Center, Stanford, CA, United States
- Berenson-Allen Center for Non-invasive Brain Stimulation, Beth Israel Deaconess Medical Center, Boston, MA, United States
- Department of Neurology, Harvard Medical School, Boston, MA, United States
- *Correspondence: Jessica M. Ross,
| | - Ramesh Balasubramaniam
- Cognitive and Information Sciences, University of California, Merced, Merced, CA, United States
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25
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van Ackooij M, Paul JM, van der Zwaag W, van der Stoep N, Harvey BM. Auditory timing-tuned neural responses in the human auditory cortices. Neuroimage 2022; 258:119366. [PMID: 35690255 DOI: 10.1016/j.neuroimage.2022.119366] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2022] [Revised: 05/25/2022] [Accepted: 06/08/2022] [Indexed: 11/27/2022] Open
Abstract
Perception of sub-second auditory event timing supports multisensory integration, and speech and music perception and production. Neural populations tuned for the timing (duration and rate) of visual events were recently described in several human extrastriate visual areas. Here we ask whether the brain also contains neural populations tuned for auditory event timing, and whether these are shared with visual timing. Using 7T fMRI, we measured responses to white noise bursts of changing duration and rate. We analyzed these responses using neural response models describing different parametric relationships between event timing and neural response amplitude. This revealed auditory timing-tuned responses in the primary auditory cortex, and auditory association areas of the belt, parabelt and premotor cortex. While these areas also showed tonotopic tuning for auditory pitch, pitch and timing preferences were not consistently correlated. Auditory timing-tuned response functions differed between these areas, though without clear hierarchical integration of responses. The similarity of auditory and visual timing tuned responses, together with the lack of overlap between the areas showing these responses for each modality, suggests modality-specific responses to event timing are computed similarly but from different sensory inputs, and then transformed differently to suit the needs of each modality.
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Affiliation(s)
- Martijn van Ackooij
- Experimental Psychology, Helmholtz Institute, Utrecht University, Heidelberglaan 1, Utrecht 3584 CS, the Netherlands
| | - Jacob M Paul
- Experimental Psychology, Helmholtz Institute, Utrecht University, Heidelberglaan 1, Utrecht 3584 CS, the Netherlands; Melbourne School of Psychological Sciences, University of Melbourne, Redmond Barry Building, Parkville 3010, Victoria, Australia
| | | | - Nathan van der Stoep
- Experimental Psychology, Helmholtz Institute, Utrecht University, Heidelberglaan 1, Utrecht 3584 CS, the Netherlands
| | - Ben M Harvey
- Experimental Psychology, Helmholtz Institute, Utrecht University, Heidelberglaan 1, Utrecht 3584 CS, the Netherlands.
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26
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Basgol H, Ayhan I, Ugur E. Time Perception: A Review on Psychological, Computational, and Robotic Models. IEEE Trans Cogn Dev Syst 2022. [DOI: 10.1109/tcds.2021.3059045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Hamit Basgol
- Department of Cognitive Science, Bogazici University, Istanbul, Turkey
| | - Inci Ayhan
- Department of Psychology, Bogazici University, Istanbul, Turkey
| | - Emre Ugur
- Department of Computer Engineering, Bogazici University, Istanbul, Turkey
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27
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Cook JR, Li H, Nguyen B, Huang HH, Mahdavian P, Kirchgessner MA, Strassmann P, Engelhardt M, Callaway EM, Jin X. Secondary auditory cortex mediates a sensorimotor mechanism for action timing. Nat Neurosci 2022; 25:330-344. [PMID: 35260862 DOI: 10.1038/s41593-022-01025-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Accepted: 01/26/2022] [Indexed: 01/08/2023]
Abstract
The ability to accurately determine when to perform an action is a fundamental brain function and vital to adaptive behavior. The behavioral mechanism and neural circuit for action timing, however, remain largely unknown. Using a new, self-paced action timing task in mice, we found that deprivation of auditory, but not somatosensory or visual input, disrupts learned action timing. The hearing effect was dependent on the auditory feedback derived from the animal's own actions, rather than passive environmental cues. Neuronal activity in the secondary auditory cortex was found to be both correlated with and necessary for the proper execution of learned action timing. Closed-loop, action-dependent optogenetic stimulation of the specific task-related neuronal population within the secondary auditory cortex rescued the key features of learned action timing under auditory deprivation. These results unveil a previously underappreciated sensorimotor mechanism in which the secondary auditory cortex transduces self-generated audiomotor feedback to control action timing.
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Affiliation(s)
- Jonathan R Cook
- Molecular Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.,Neurosciences Graduate Program, University of California, San Diego, La Jolla, CA, USA.,Champalimaud Centre for the Unknown, Champalimaud Research, Champalimaud Foundation, Lisbon, Portugal
| | - Hao Li
- Molecular Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA
| | - Bella Nguyen
- Molecular Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA
| | - Hsiang-Hsuan Huang
- Molecular Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.,Neurosciences Graduate Program, University of California, San Diego, La Jolla, CA, USA
| | - Payaam Mahdavian
- Molecular Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA
| | - Megan A Kirchgessner
- Neurosciences Graduate Program, University of California, San Diego, La Jolla, CA, USA.,Systems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.,Skirball Institute for Biomolecular Medicine, New York University School of Medicine, New York, NY, USA
| | - Patrick Strassmann
- Molecular Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.,Neurosciences Graduate Program, University of California, San Diego, La Jolla, CA, USA
| | - Max Engelhardt
- Molecular Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA
| | - Edward M Callaway
- Systems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA
| | - Xin Jin
- Molecular Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA. .,Center for Motor Control and Disease, Key Laboratory of Brain Functional Genomics, East China Normal University, Shanghai, China. .,NYU-ECNU Institute of Brain and Cognitive Science, New York University Shanghai, Shanghai, China.
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28
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Linear vector models of time perception account for saccade and stimulus novelty interactions. Heliyon 2022; 8:e09036. [PMID: 35265767 PMCID: PMC8899236 DOI: 10.1016/j.heliyon.2022.e09036] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2021] [Revised: 11/24/2021] [Accepted: 02/25/2022] [Indexed: 11/21/2022] Open
Abstract
Various models (e.g., scalar, state-dependent network, and vector models) have been proposed to explain the global aspects of time perception, but they have not been tested against specific visual phenomena like perisaccadic time compression and novel stimulus time dilation. Here, in two separate experiments (N = 31), we tested how the perceived duration of a novel stimulus is influenced by 1) a simultaneous saccade, in combination with 2) a prior series of repeated stimuli in human participants. This yielded a novel behavioral interaction: pre-saccadic stimulus repetition neutralizes perisaccadic time compression. We then tested these results against simulations of the above models. Our data yielded low correlations against scalar model simulations, high but non-specific correlations for our feedforward neural network, and correlations that were both high and specific for a vector model based on identity of objective and subjective time. These results demonstrate the power of global time perception models in explaining disparate empirical phenomena and suggest that subjective time has a similar essence to time's physical vector.
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29
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Ioannides G, Kourouklides I, Astolfi A. Spatiotemporal dynamics in spiking recurrent neural networks using modified-full-FORCE on EEG signals. Sci Rep 2022; 12:2896. [PMID: 35190579 PMCID: PMC8861015 DOI: 10.1038/s41598-022-06573-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2021] [Accepted: 01/05/2022] [Indexed: 11/22/2022] Open
Abstract
Methods on modelling the human brain as a Complex System have increased remarkably in the literature as researchers seek to understand the underlying foundations behind cognition, behaviour, and perception. Computational methods, especially Graph Theory-based methods, have recently contributed significantly in understanding the wiring connectivity of the brain, modelling it as a set of nodes connected by edges. Therefore, the brain’s spatiotemporal dynamics can be holistically studied by considering a network, which consists of many neurons, represented by nodes. Various models have been proposed for modelling such neurons. A recently proposed method in training such networks, called full-Force, produces networks that perform tasks with fewer neurons and greater noise robustness than previous least-squares approaches (i.e. FORCE method). In this paper, the first direct applicability of a variant of the full-Force method to biologically-motivated Spiking RNNs (SRNNs) is demonstrated. The SRNN is a graph consisting of modules. Each module is modelled as a Small-World Network (SWN), which is a specific type of a biologically-plausible graph. So, the first direct applicability of a variant of the full-Force method to modular SWNs is demonstrated, evaluated through regression and information theoretic metrics. For the first time, the aforementioned method is applied to spiking neuron models and trained on various real-life Electroencephalography (EEG) signals. To the best of the authors’ knowledge, all the contributions of this paper are novel. Results show that trained SRNNs match EEG signals almost perfectly, while network dynamics can mimic the target dynamics. This demonstrates that the holistic setup of the network model and the neuron model which are both more biologically plausible than previous work, can be tuned into real biological signal dynamics.
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Affiliation(s)
- Georgios Ioannides
- Department of Electrical and Electronic Engineering, Imperial College London, London, SW7 2AZ, UK.
| | - Ioannis Kourouklides
- Department of Electrical Engineering, Computer Engineering and Informatics, Cyprus University of Technology, 33 Saripolou Street, 3036, Limassol, Cyprus
| | - Alessandro Astolfi
- Department of Electrical and Electronic Engineering, Imperial College London, London, SW7 2AZ, UK
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30
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Hogendoorn H. Perception in real-time: predicting the present, reconstructing the past. Trends Cogn Sci 2022; 26:128-141. [PMID: 34973925 DOI: 10.1016/j.tics.2021.11.003] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Revised: 11/16/2021] [Accepted: 11/17/2021] [Indexed: 01/06/2023]
Abstract
We feel that we perceive events in the environment as they unfold in real-time. However, this intuitive view of perception is impossible to implement in the nervous system due to biological constraints such as neural transmission delays. I propose a new way of thinking about real-time perception: at any given moment, instead of representing a single timepoint, perceptual mechanisms represent an entire timeline. On this timeline, predictive mechanisms predict ahead to compensate for delays in incoming sensory input, and reconstruction mechanisms retroactively revise perception when those predictions do not come true. This proposal integrates and extends previous work to address a crucial gap in our understanding of a fundamental aspect of our everyday life: the experience of perceiving the present.
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Affiliation(s)
- Hinze Hogendoorn
- Melbourne School of Psychological Sciences, The University of Melbourne, Parkville, VIC 3010, Australia.
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31
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White PA. Perception of Happening: How the Brain Deals with the No-History Problem. Cogn Sci 2021; 45:e13068. [PMID: 34865252 DOI: 10.1111/cogs.13068] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2020] [Revised: 09/01/2021] [Accepted: 11/04/2021] [Indexed: 11/30/2022]
Abstract
In physics, the temporal dimension has units of infinitesimally brief duration. Given this, how is it possible to perceive things, such as motion, music, and vibrotactile stimulation, that involve extension across many units of time? To address this problem, it is proposed that there is what is termed an "information construct of happening" (ICOH), a simultaneous representation of recent, temporally differentiated perceptual information on the millisecond time scale. The main features of the ICOH are (i) time marking, semantic labeling of all information in the ICOH with ordinal temporal information and distance from what is informationally identified as the present moment, (ii) vector informational features that specify kind, direction, and rate of change for every feature in a percept, and (iii) connectives, information relating vector informational features at adjacent temporal locations in the ICOH. The ICOH integrates products of perceptual processing with recent historical information in sensory memory on the subsecond time scale. Perceptual information about happening in informational sensory memory is encoded in semantic form that preserves connected semantic trails of vector and timing information. The basic properties of the ICOH must be supported by a general and widespread timing mechanism that generates ordinal and interval timing information and it is suggested that state-dependent networks may suffice for that purpose. Happening, therefore, is perceived at a moment and is constituted by an information structure of connected recent historical information.
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32
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Dominey PF. Narrative event segmentation in the cortical reservoir. PLoS Comput Biol 2021; 17:e1008993. [PMID: 34618804 PMCID: PMC8525778 DOI: 10.1371/journal.pcbi.1008993] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Revised: 10/19/2021] [Accepted: 09/08/2021] [Indexed: 01/04/2023] Open
Abstract
Recent research has revealed that during continuous perception of movies or stories, humans display cortical activity patterns that reveal hierarchical segmentation of event structure. Thus, sensory areas like auditory cortex display high frequency segmentation related to the stimulus, while semantic areas like posterior middle cortex display a lower frequency segmentation related to transitions between events. These hierarchical levels of segmentation are associated with different time constants for processing. Likewise, when two groups of participants heard the same sentence in a narrative, preceded by different contexts, neural responses for the groups were initially different and then gradually aligned. The time constant for alignment followed the segmentation hierarchy: sensory cortices aligned most quickly, followed by mid-level regions, while some higher-order cortical regions took more than 10 seconds to align. These hierarchical segmentation phenomena can be considered in the context of processing related to comprehension. In a recently described model of discourse comprehension word meanings are modeled by a language model pre-trained on a billion word corpus. During discourse comprehension, word meanings are continuously integrated in a recurrent cortical network. The model demonstrates novel discourse and inference processing, in part because of two fundamental characteristics: real-world event semantics are represented in the word embeddings, and these are integrated in a reservoir network which has an inherent gradient of functional time constants due to the recurrent connections. Here we demonstrate how this model displays hierarchical narrative event segmentation properties beyond the embeddings alone, or their linear integration. The reservoir produces activation patterns that are segmented by a hidden Markov model (HMM) in a manner that is comparable to that of humans. Context construction displays a continuum of time constants across reservoir neuron subsets, while context forgetting has a fixed time constant across these subsets. Importantly, virtual areas formed by subgroups of reservoir neurons with faster time constants segmented with shorter events, while those with longer time constants preferred longer events. This neurocomputational recurrent neural network simulates narrative event processing as revealed by the fMRI event segmentation algorithm provides a novel explanation of the asymmetry in narrative forgetting and construction. The model extends the characterization of online integration processes in discourse to more extended narrative, and demonstrates how reservoir computing provides a useful model of cortical processing of narrative structure.
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Affiliation(s)
- Peter Ford Dominey
- INSERM UMR1093-CAPS, Université Bourgogne Franche-Comté, UFR des Sciences du Sport, Dijon
- Robot Cognition Laboratory, Institute Marey, Dijon
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33
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White PA. The extended present: an informational context for perception. Acta Psychol (Amst) 2021; 220:103403. [PMID: 34454251 DOI: 10.1016/j.actpsy.2021.103403] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Revised: 08/04/2021] [Accepted: 08/19/2021] [Indexed: 01/29/2023] Open
Abstract
Several previous authors have proposed a kind of specious or subjective present moment that covers a few seconds of recent information. This article proposes a new hypothesis about the subjective present, renamed the extended present, defined not in terms of time covered but as a thematically connected information structure held in working memory and in transiently accessible form in long-term memory. The three key features of the extended present are that information in it is thematically connected, both internally and to current attended perceptual input, it is organised in a hierarchical structure, and all information in it is marked with temporal information, specifically ordinal and duration information. Temporal boundaries to the information structure are determined by hierarchical structure processing and by limits on processing and storage capacity. Supporting evidence for the importance of hierarchical structure analysis is found in the domains of music perception, speech and language processing, perception and production of goal-directed action, and exact arithmetical calculation. Temporal information marking is also discussed and a possible mechanism for representing ordinal and duration information on the time scale of the extended present is proposed. It is hypothesised that the extended present functions primarily as an informational context for making sense of current perceptual input, and as an enabler for perception and generation of complex structures and operations in language, action, music, exact calculation, and other domains.
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34
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Differential Short-Term Plasticity of PV and SST Neurons Accounts for Adaptation and Facilitation of Cortical Neurons to Auditory Tones. J Neurosci 2020; 40:9224-9235. [PMID: 33097639 DOI: 10.1523/jneurosci.0686-20.2020] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2020] [Revised: 09/16/2020] [Accepted: 10/14/2020] [Indexed: 11/21/2022] Open
Abstract
Cortical responses to sensory stimuli are strongly modulated by temporal context. One of the best studied examples of such modulation is sensory adaptation. We first show that in response to repeated tones pyramidal (Pyr) neurons in male mouse auditory cortex (A1) exhibit facilitating and stable responses, in addition to adapting responses. To examine the potential mechanisms underlying these distinct temporal profiles, we developed a reduced spiking model of sensory cortical circuits that incorporated the signature short-term synaptic plasticity (STP) profiles of the inhibitory parvalbumin (PV) and somatostatin (SST) interneurons. The model accounted for all three temporal response profiles as the result of dynamic changes in excitatory/inhibitory balance produced by STP, primarily through shifts in the relative latency of Pyr and inhibitory neurons. Transition between the three response profiles was possible by changing the strength of the inhibitory PV→Pyr and SST→Pyr synapses. The model predicted that a unit's latency would be related to its temporal profile. Consistent with this prediction, the latency of stable units was significantly shorter than that of adapting and facilitating units. Furthermore, because of the history-dependence of STP the model generated a paradoxical prediction: that inactivation of inhibitory neurons during one tone would decrease the response of A1 neurons to a subsequent tone. Indeed, we observed that optogenetic inactivation of PV neurons during one tone counterintuitively decreased the spiking of Pyr neurons to a subsequent tone 400 ms later. These results provide evidence that STP is critical to temporal context-dependent responses in the sensory cortex.SIGNIFICANCE STATEMENT Our perception of speech and music depends strongly on temporal context, i.e., the significance of a stimulus depends on the preceding stimuli. Complementary neural mechanisms are needed to sometimes ignore repetitive stimuli (e.g., the tic of a clock) or detect meaningful repetition (e.g., consecutive tones in Morse code). We modeled a neural circuit that accounts for diverse experimentally-observed response profiles in auditory cortex (A1) neurons, based on known forms of short-term synaptic plasticity (STP). Whether the simulated circuit reduced, maintained, or enhanced its response to repeated tones depended on the relative dominance of two different types of inhibitory cells. The model made novel predictions that were experimentally validated. Results define an important role for STP in temporal context-dependent perception.
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35
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Time as the fourth dimension in the hippocampus. Prog Neurobiol 2020; 199:101920. [PMID: 33053416 DOI: 10.1016/j.pneurobio.2020.101920] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2019] [Revised: 08/18/2020] [Accepted: 10/07/2020] [Indexed: 12/17/2022]
Abstract
Experiences of animal and human beings are structured by the continuity of space and time coupled with the uni-directionality of time. In addition to its pivotal position in spatial processing and navigation, the hippocampal system also plays a central, multiform role in several types of temporal processing. These include timing and sequence learning, at scales ranging from meso-scales of seconds to macro-scales of minutes, hours, days and beyond, encompassing the classical functions of short term memory, working memory, long term memory, and episodic memories (comprised of information about when, what, and where). This review article highlights the principal findings and behavioral contexts of experiments in rats showing: 1) timing: tracking time during delays by hippocampal 'time cells' and during free behavior by hippocampal-afferent lateral entorhinal cortex ramping cells; 2) 'online' sequence processing: activity coding sequences of events during active behavior; 3) 'off-line' sequence replay: during quiescence or sleep, orderly reactivation of neuronal assemblies coding awake sequences. Studies in humans show neurophysiological correlates of episodic memory comparable to awake replay. Neural mechanisms are discussed, including ion channel properties, plateau and ramping potentials, oscillations of excitation and inhibition of population activity, bursts of high amplitude discharges (sharp wave ripples), as well as short and long term synaptic modifications among and within cell assemblies. Specifically conceived neural network models will suggest processes supporting the emergence of scalar properties (Weber's law), and include different classes of feedforward and recurrent network models, with intrinsic hippocampal coding for 'transitions' (sequencing of events or places).
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36
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Wilting J, Priesemann V. Between Perfectly Critical and Fully Irregular: A Reverberating Model Captures and Predicts Cortical Spike Propagation. Cereb Cortex 2020; 29:2759-2770. [PMID: 31008508 PMCID: PMC6519697 DOI: 10.1093/cercor/bhz049] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2018] [Revised: 01/20/2019] [Indexed: 12/11/2022] Open
Abstract
Knowledge about the collective dynamics of cortical spiking is very informative about the underlying coding principles. However, even most basic properties are not known with certainty, because their assessment is hampered by spatial subsampling, i.e., the limitation that only a tiny fraction of all neurons can be recorded simultaneously with millisecond precision. Building on a novel, subsampling-invariant estimator, we fit and carefully validate a minimal model for cortical spike propagation. The model interpolates between two prominent states: asynchronous and critical. We find neither of them in cortical spike recordings across various species, but instead identify a narrow "reverberating" regime. This approach enables us to predict yet unknown properties from very short recordings and for every circuit individually, including responses to minimal perturbations, intrinsic network timescales, and the strength of external input compared to recurrent activation "thereby informing about the underlying coding principles for each circuit, area, state and task.
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Affiliation(s)
- J Wilting
- Max-Planck-Institute for Dynamics and Self-Organization, Am Faß berg 17, Göttingen, Germany
| | - V Priesemann
- Max-Planck-Institute for Dynamics and Self-Organization, Am Faß berg 17, Göttingen, Germany.,Bernstein-Center for Computational Neuroscience, Göttingen, Germany
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37
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Heys JG, Wu Z, Allegra Mascaro AL, Dombeck DA. Inactivation of the Medial Entorhinal Cortex Selectively Disrupts Learning of Interval Timing. Cell Rep 2020; 32:108163. [PMID: 32966784 PMCID: PMC8719477 DOI: 10.1016/j.celrep.2020.108163] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2019] [Revised: 03/06/2020] [Accepted: 08/26/2020] [Indexed: 11/25/2022] Open
Abstract
The entorhinal-hippocampal circuit can encode features of elapsed time, but nearly all previous research focused on neural encoding of "implicit time." Recent research has revealed encoding of "explicit time" in the medial entorhinal cortex (MEC) as mice are actively engaged in an interval timing task. However, it is unclear whether the MEC is required for temporal perception and/or learning during such explicit timing tasks. We therefore optogenetically inactivated the MEC as mice learned an interval timing "door stop" task that engaged mice in immobile interval timing behavior and locomotion-dependent navigation behavior. We find that the MEC is critically involved in learning of interval timing but not necessary for estimating temporal duration after learning. Together with our previous research, these results suggest that activity of a subcircuit in the MEC that encodes elapsed time during immobility is necessary for learning interval timing behaviors.
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Affiliation(s)
- James G Heys
- Department of Neurobiology, Northwestern University, Evanston, IL, USA
| | - Zihan Wu
- Department of Neurobiology, Northwestern University, Evanston, IL, USA
| | | | - Daniel A Dombeck
- Department of Neurobiology, Northwestern University, Evanston, IL, USA.
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38
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Fox NP, Leonard M, Sjerps MJ, Chang EF. Transformation of a temporal speech cue to a spatial neural code in human auditory cortex. eLife 2020; 9:e53051. [PMID: 32840483 PMCID: PMC7556862 DOI: 10.7554/elife.53051] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2019] [Accepted: 08/21/2020] [Indexed: 11/28/2022] Open
Abstract
In speech, listeners extract continuously-varying spectrotemporal cues from the acoustic signal to perceive discrete phonetic categories. Spectral cues are spatially encoded in the amplitude of responses in phonetically-tuned neural populations in auditory cortex. It remains unknown whether similar neurophysiological mechanisms encode temporal cues like voice-onset time (VOT), which distinguishes sounds like /b/ and/p/. We used direct brain recordings in humans to investigate the neural encoding of temporal speech cues with a VOT continuum from /ba/ to /pa/. We found that distinct neural populations respond preferentially to VOTs from one phonetic category, and are also sensitive to sub-phonetic VOT differences within a population's preferred category. In a simple neural network model, simulated populations tuned to detect either temporal gaps or coincidences between spectral cues captured encoding patterns observed in real neural data. These results demonstrate that a spatial/amplitude neural code underlies the cortical representation of both spectral and temporal speech cues.
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Affiliation(s)
- Neal P Fox
- Department of Neurological Surgery, University of California, San FranciscoSan FranciscoUnited States
| | - Matthew Leonard
- Department of Neurological Surgery, University of California, San FranciscoSan FranciscoUnited States
| | - Matthias J Sjerps
- Donders Institute for Brain, Cognition and Behaviour, Centre for Cognitive Neuroimaging, Radboud UniversityNijmegenNetherlands
- Max Planck Institute for PsycholinguisticsNijmegenNetherlands
| | - Edward F Chang
- Department of Neurological Surgery, University of California, San FranciscoSan FranciscoUnited States
- Weill Institute for Neurosciences, University of California, San FranciscoSan FranciscoUnited States
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39
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Klos C, Kalle Kossio YF, Goedeke S, Gilra A, Memmesheimer RM. Dynamical Learning of Dynamics. PHYSICAL REVIEW LETTERS 2020; 125:088103. [PMID: 32909804 DOI: 10.1103/physrevlett.125.088103] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2019] [Revised: 06/24/2020] [Accepted: 07/21/2020] [Indexed: 06/11/2023]
Abstract
The ability of humans and animals to quickly adapt to novel tasks is difficult to reconcile with the standard paradigm of learning by slow synaptic weight modification. Here, we show that fixed-weight neural networks can learn to generate required dynamics by imitation. After appropriate weight pretraining, the networks quickly and dynamically adapt to learn new tasks and thereafter continue to achieve them without further teacher feedback. We explain this ability and illustrate it with a variety of target dynamics, ranging from oscillatory trajectories to driven and chaotic dynamical systems.
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Affiliation(s)
- Christian Klos
- Neural Network Dynamics and Computation, Institute of Genetics, University of Bonn, 53115 Bonn, Germany
| | | | - Sven Goedeke
- Neural Network Dynamics and Computation, Institute of Genetics, University of Bonn, 53115 Bonn, Germany
| | - Aditya Gilra
- Neural Network Dynamics and Computation, Institute of Genetics, University of Bonn, 53115 Bonn, Germany
- Department of Computer Science, and Neuroscience Institute, University of Sheffield, Sheffield S1 4DP, United Kingdom
| | - Raoul-Martin Memmesheimer
- Neural Network Dynamics and Computation, Institute of Genetics, University of Bonn, 53115 Bonn, Germany
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40
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41
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Haessig G, Milde MB, Aceituno PV, Oubari O, Knight JC, van Schaik A, Benosman RB, Indiveri G. Event-Based Computation for Touch Localization Based on Precise Spike Timing. Front Neurosci 2020; 14:420. [PMID: 32528239 PMCID: PMC7248403 DOI: 10.3389/fnins.2020.00420] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2019] [Accepted: 04/07/2020] [Indexed: 11/13/2022] Open
Abstract
Precise spike timing and temporal coding are used extensively within the nervous system of insects and in the sensory periphery of higher order animals. However, conventional Artificial Neural Networks (ANNs) and machine learning algorithms cannot take advantage of this coding strategy, due to their rate-based representation of signals. Even in the case of artificial Spiking Neural Networks (SNNs), identifying applications where temporal coding outperforms the rate coding strategies of ANNs is still an open challenge. Neuromorphic sensory-processing systems provide an ideal context for exploring the potential advantages of temporal coding, as they are able to efficiently extract the information required to cluster or classify spatio-temporal activity patterns from relative spike timing. Here we propose a neuromorphic model inspired by the sand scorpion to explore the benefits of temporal coding, and validate it in an event-based sensory-processing task. The task consists in localizing a target using only the relative spike timing of eight spatially-separated vibration sensors. We propose two different approaches in which the SNNs learns to cluster spatio-temporal patterns in an unsupervised manner and we demonstrate how the task can be solved both analytically and through numerical simulation of multiple SNN models. We argue that the models presented are optimal for spatio-temporal pattern classification using precise spike timing in a task that could be used as a standard benchmark for evaluating event-based sensory processing models based on temporal coding.
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Affiliation(s)
- Germain Haessig
- Institute of Neuroinformatics, University of Zurich and ETH Zurich, Zurich, Switzerland
| | - Moritz B Milde
- International Centre for Neuromorphic Systems, MARCS Institute, Western Sydney University, Penrith, NSW, Australia
| | - Pau Vilimelis Aceituno
- Max Planck Institute for Mathematics in the Sciences, Leipzig, Germany.,Max Planck School of Cognition, Leipzig, Germany
| | - Omar Oubari
- Institut de la Vision, Sorbonne Université, Paris, France
| | - James C Knight
- Centre for Computational Neuroscience and Robotics, School of Engineering and Informatics, University of Sussex, Brighton, United Kingdom
| | - André van Schaik
- International Centre for Neuromorphic Systems, MARCS Institute, Western Sydney University, Penrith, NSW, Australia
| | - Ryad B Benosman
- Institut de la Vision, Sorbonne Université, Paris, France.,University of Pittsburgh, Pittsburgh, PA, United States.,Carnegie Mellon University, Pittsburgh, PA, United States
| | - Giacomo Indiveri
- Institute of Neuroinformatics, University of Zurich and ETH Zurich, Zurich, Switzerland
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42
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Tong R, Emptage NJ, Padamsey Z. A two-compartment model of synaptic computation and plasticity. Mol Brain 2020; 13:79. [PMID: 32434549 PMCID: PMC7238589 DOI: 10.1186/s13041-020-00617-1] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2020] [Accepted: 05/06/2020] [Indexed: 11/10/2022] Open
Abstract
The synapse is typically viewed as a single compartment, which acts as a linear gain controller on incoming input. Traditional plasticity rules enable this gain control to be dynamically optimized by Hebbian activity. Whilst this view nicely captures postsynaptic function, it neglects the non-linear dynamics of presynaptic function. Here we present a two-compartment model of the synapse in which the presynaptic terminal first acts to filter presynaptic input before the postsynaptic terminal, acting as a gain controller, amplifies or depresses transmission. We argue that both compartments are equipped with distinct plasticity rules to enable them to optimally adapt synaptic transmission to the statistics of pre- and postsynaptic activity. Specifically, we focus on how presynaptic plasticity enables presynaptic filtering to be optimally tuned to only transmit information relevant for postsynaptic firing. We end by discussing the advantages of having a presynaptic filter and propose future work to explore presynaptic function and plasticity in vivo.
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Affiliation(s)
- Rudi Tong
- Department of Pharmacology, University of Oxford, Mansfield Road, Oxford, OX1 3QT, UK. .,Current address: McGill University, Montreal Neurological Institute, 3801 University Street, Montreal, H3A 2B4, Canada.
| | - Nigel J Emptage
- Department of Pharmacology, University of Oxford, Mansfield Road, Oxford, OX1 3QT, UK.
| | - Zahid Padamsey
- Centre of Discovery Brain Sciences, University of Edinburgh, 9 George Square, Edinburgh, EH8 9XD, UK.
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43
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Sederberg A, Nemenman I. Randomly connected networks generate emergent selectivity and predict decoding properties of large populations of neurons. PLoS Comput Biol 2020; 16:e1007875. [PMID: 32379751 PMCID: PMC7237045 DOI: 10.1371/journal.pcbi.1007875] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2020] [Revised: 05/19/2020] [Accepted: 04/14/2020] [Indexed: 01/12/2023] Open
Abstract
Modern recording methods enable sampling of thousands of neurons during the performance of behavioral tasks, raising the question of how recorded activity relates to theoretical models. In the context of decision making, functional connectivity between choice-selective cortical neurons was recently reported. The straightforward interpretation of these data suggests the existence of selective pools of inhibitory and excitatory neurons. Computationally investigating an alternative mechanism for these experimental observations, we find that a randomly connected network of excitatory and inhibitory neurons generates single-cell selectivity, patterns of pairwise correlations, and the same ability of excitatory and inhibitory populations to predict choice, as in experimental observations. Further, we predict that, for this task, there are no anatomically defined subpopulations of neurons representing choice, and that choice preference of a particular neuron changes with the details of the task. We suggest that distributed stimulus selectivity and functional organization in population codes could be emergent properties of randomly connected networks.
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Affiliation(s)
- Audrey Sederberg
- Department of Physics, Emory University, Atlanta, Georgia, United States of America
- Initiative in Theory and Modeling of Living Systems, Emory University, Atlanta, Georgia, United States of America
| | - Ilya Nemenman
- Department of Physics, Emory University, Atlanta, Georgia, United States of America
- Initiative in Theory and Modeling of Living Systems, Emory University, Atlanta, Georgia, United States of America
- Department of Biology, Emory University, Atlanta, Georgia, United States of America
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44
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Hong C, Wei X, Wang J, Deng B, Yu H, Che Y. Training Spiking Neural Networks for Cognitive Tasks: A Versatile Framework Compatible With Various Temporal Codes. IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS 2020; 31:1285-1296. [PMID: 31247574 DOI: 10.1109/tnnls.2019.2919662] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Recent studies have demonstrated the effectiveness of supervised learning in spiking neural networks (SNNs). A trainable SNN provides a valuable tool not only for engineering applications but also for theoretical neuroscience studies. Here, we propose a modified SpikeProp learning algorithm, which ensures better learning stability for SNNs and provides more diverse network structures and coding schemes. Specifically, we designed a spike gradient threshold rule to solve the well-known gradient exploding problem in SNN training. In addition, regulation rules on firing rates and connection weights are proposed to control the network activity during training. Based on these rules, biologically realistic features such as lateral connections, complex synaptic dynamics, and sparse activities are included in the network to facilitate neural computation. We demonstrate the versatility of this framework by implementing three well-known temporal codes for different types of cognitive tasks, namely, handwritten digit recognition, spatial coordinate transformation, and motor sequence generation. Several important features observed in experimental studies, such as selective activity, excitatory-inhibitory balance, and weak pairwise correlation, emerged in the trained model. This agreement between experimental and computational results further confirmed the importance of these features in neural function. This work provides a new framework, in which various neural behaviors can be modeled and the underlying computational mechanisms can be studied.
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Harvey BM, Dumoulin SO, Fracasso A, Paul JM. A Network of Topographic Maps in Human Association Cortex Hierarchically Transforms Visual Timing-Selective Responses. Curr Biol 2020; 30:1424-1434.e6. [PMID: 32142704 PMCID: PMC7181178 DOI: 10.1016/j.cub.2020.01.090] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2019] [Revised: 01/07/2020] [Accepted: 01/30/2020] [Indexed: 01/02/2023]
Abstract
Accurately timing sub-second sensory events is crucial when perceiving our dynamic world. This ability allows complex human behaviors that require timing-dependent multisensory integration and action planning. Such behaviors include perception and performance of speech, music, driving, and many sports. How are responses to sensory event timing processed for multisensory integration and action planning? We measured responses to viewing systematically changing visual event timing using ultra-high-field fMRI. We analyzed these responses with neural population response models selective for event duration and frequency, following behavioral, computational, and macaque action planning results and comparisons to alternative models. We found systematic local changes in timing preferences (recently described in supplementary motor area) in an extensive network of topographic timing maps, mirroring sensory cortices and other quantity processing networks. These timing maps were partially left lateralized and widely spread, from occipital visual areas through parietal multisensory areas to frontal action planning areas. Responses to event duration and frequency were closely linked. As in sensory cortical maps, response precision varied systematically with timing preferences, and timing selectivity systematically varied between maps. Progressing from posterior to anterior maps, responses to multiple events were increasingly integrated, response selectivity narrowed, and responses focused increasingly on the middle of the presented timing range. These timing maps largely overlap with numerosity and visual field map networks. In both visual timing map and visual field map networks, selective responses and topographic map organization may facilitate hierarchical transformations by allowing neural populations to interact over minimal distances. Many brain areas show neural responses to specific ranges of visual event timing Timing preferences change gradually in these areas, forming topographic timing maps Neural response properties hierarchically transform from visual to premotor areas Timing, numerosity, and visual field map networks are distinct but largely overlap
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Affiliation(s)
- Ben M Harvey
- Experimental Psychology, Helmholtz Institute, Utrecht University, Heidelberglaan 1, 3584 CS Utrecht, the Netherlands.
| | - Serge O Dumoulin
- Experimental Psychology, Helmholtz Institute, Utrecht University, Heidelberglaan 1, 3584 CS Utrecht, the Netherlands; Spinoza Center for Neuroimaging, Meibergdreef 75, 1105 BK Amsterdam, the Netherlands; Experimental and Applied Psychology, VU University, Van der Boechorststraat 7, 1081 BT Amsterdam, the Netherlands
| | - Alessio Fracasso
- Spinoza Center for Neuroimaging, Meibergdreef 75, 1105 BK Amsterdam, the Netherlands; Institute of Neuroscience and Psychology, University of Glasgow, 62 Hillhead Street, Glasgow G12 8QB, United Kingdom
| | - Jacob M Paul
- Experimental Psychology, Helmholtz Institute, Utrecht University, Heidelberglaan 1, 3584 CS Utrecht, the Netherlands
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46
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Manz P, Goedeke S, Memmesheimer RM. Dynamics and computation in mixed networks containing neurons that accelerate towards spiking. Phys Rev E 2019; 100:042404. [PMID: 31770941 DOI: 10.1103/physreve.100.042404] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2018] [Indexed: 11/07/2022]
Abstract
Networks in the brain consist of different types of neurons. Here we investigate the influence of neuron diversity on the dynamics, phase space structure, and computational capabilities of spiking neural networks. We find that already a single neuron of a different type can qualitatively change the network dynamics and that mixed networks may combine the computational capabilities of ones with a single-neuron type. We study inhibitory networks of concave leaky (LIF) and convex "antileaky" (XIF) integrate-and-fire neurons that generalize irregularly spiking nonchaotic LIF neuron networks. Endowed with simple conductance-based synapses for XIF neurons, our networks can generate a balanced state of irregular asynchronous spiking as well. We determine the voltage probability distributions and self-consistent firing rates assuming Poisson input with finite-size spike impacts. Further, we compute the full spectrum of Lyapunov exponents (LEs) and the covariant Lyapunov vectors (CLVs) specifying the corresponding perturbation directions. We find that there is approximately one positive LE for each XIF neuron. This indicates in particular that a single XIF neuron renders the network dynamics chaotic. A simple mean-field approach, which can be justified by properties of the CLVs, explains the finding. As an application, we propose a spike-based computing scheme where our networks serve as computational reservoirs and their different stability properties yield different computational capabilities.
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Affiliation(s)
- Paul Manz
- Neural Network Dynamics and Computation, Institute for Genetics, University of Bonn, 53115 Bonn, Germany
| | - Sven Goedeke
- Neural Network Dynamics and Computation, Institute for Genetics, University of Bonn, 53115 Bonn, Germany
| | - Raoul-Martin Memmesheimer
- Neural Network Dynamics and Computation, Institute for Genetics, University of Bonn, 53115 Bonn, Germany
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47
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Abstract
Gated working memory is defined as the capacity of holding arbitrary information at any time in order to be used at a later time. Based on electrophysiological recordings, several computational models have tackled the problem using dedicated and explicit mechanisms. We propose instead to consider an implicit mechanism based on a random recurrent neural network. We introduce a robust yet simple reservoir model of gated working memory with instantaneous updates. The model is able to store an arbitrary real value at random time over an extended period of time. The dynamics of the model is a line attractor that learns to exploit reentry and a nonlinearity during the training phase using only a few representative values. A deeper study of the model shows that there is actually a large range of hyperparameters for which the results hold (e.g., number of neurons, sparsity, global weight scaling) such that any large enough population, mixing excitatory and inhibitory neurons, can quickly learn to realize such gated working memory. In a nutshell, with a minimal set of hypotheses, we show that we can have a robust model of working memory. This suggests this property could be an implicit property of any random population, that can be acquired through learning. Furthermore, considering working memory to be a physically open but functionally closed system, we give account on some counterintuitive electrophysiological recordings.
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Affiliation(s)
- Anthony Strock
- Inria Bordeaux Sud-Ouest, 33405 Talence Cedex, France; LaBRI, Université de Bordeaux, Institut Polytechnique de Bordeaux, Centre National de la Recherche Scientifique, 33405 Talence Cedex, France; and Institut des Maladies Neurodégénératives, Université de Bordeaux, Centre National de la Recherche Scientifique, 33076 Cedex, Bordeaux, France
| | - Xavier Hinaut
- Inria Bordeaux Sud-Ouest, 33405 Talence Cedex, France; LaBRI, Université de Bordeaux, Institut Polytechnique de Bordeaux, Centre National de la Recherche Scientifique, 33405 Talence Cedex, France; and Institut des Maladies Neurodégénératives, Université de Bordeaux, Centre National de la Recherche Scientifique, 33076 Cedex, Bordeaux, France
| | - Nicolas P Rougier
- Inria Bordeaux Sud-Ouest, 33405 Talence Cedex, France; LaBRI, Université de Bordeaux, Institut Polytechnique de Bordeaux, Centre National de la Recherche Scientifique, 33405 Talence Cedex, France; and Institut des Maladies Neurodégénératives, Université de Bordeaux, Centre National de la Recherche Scientifique, 33076 Cedex, Bordeaux, France
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48
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Remington ED, Narain D, Hosseini EA, Jazayeri M. Flexible Sensorimotor Computations through Rapid Reconfiguration of Cortical Dynamics. Neuron 2019; 98:1005-1019.e5. [PMID: 29879384 DOI: 10.1016/j.neuron.2018.05.020] [Citation(s) in RCA: 167] [Impact Index Per Article: 27.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2017] [Revised: 03/19/2018] [Accepted: 05/11/2018] [Indexed: 10/14/2022]
Abstract
Neural mechanisms that support flexible sensorimotor computations are not well understood. In a dynamical system whose state is determined by interactions among neurons, computations can be rapidly reconfigured by controlling the system's inputs and initial conditions. To investigate whether the brain employs such control mechanisms, we recorded from the dorsomedial frontal cortex of monkeys trained to measure and produce time intervals in two sensorimotor contexts. The geometry of neural trajectories during the production epoch was consistent with a mechanism wherein the measured interval and sensorimotor context exerted control over cortical dynamics by adjusting the system's initial condition and input, respectively. These adjustments, in turn, set the speed at which activity evolved in the production epoch, allowing the animal to flexibly produce different time intervals. These results provide evidence that the language of dynamical systems can be used to parsimoniously link brain activity to sensorimotor computations.
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Affiliation(s)
- Evan D Remington
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Devika Narain
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Brain & Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA; Netherlands Institute for Neuroscience, Amsterdam, the Netherlands; Erasmus Medical Center, Rotterdam, the Netherlands
| | - Eghbal A Hosseini
- Department of Brain & Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Mehrdad Jazayeri
- McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Brain & Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA.
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49
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Paton JJ, Buonomano DV. The Neural Basis of Timing: Distributed Mechanisms for Diverse Functions. Neuron 2019; 98:687-705. [PMID: 29772201 DOI: 10.1016/j.neuron.2018.03.045] [Citation(s) in RCA: 220] [Impact Index Per Article: 36.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2018] [Revised: 02/26/2018] [Accepted: 03/24/2018] [Indexed: 12/15/2022]
Abstract
Timing is critical to most forms of learning, behavior, and sensory-motor processing. Converging evidence supports the notion that, precisely because of its importance across a wide range of brain functions, timing relies on intrinsic and general properties of neurons and neural circuits; that is, the brain uses its natural cellular and network dynamics to solve a diversity of temporal computations. Many circuits have been shown to encode elapsed time in dynamically changing patterns of neural activity-so-called population clocks. But temporal processing encompasses a wide range of different computations, and just as there are different circuits and mechanisms underlying computations about space, there are a multitude of circuits and mechanisms underlying the ability to tell time and generate temporal patterns.
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Affiliation(s)
- Joseph J Paton
- Champalimaud Research, Champalimaud Centre for the Unknown, Lisbon, Portugal.
| | - Dean V Buonomano
- Departments of Neurobiology and Psychology and Brain Research Institute, Integrative Center for Learning and Memory, University of California, Los Angeles, Los Angeles, CA, USA.
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50
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Hu R, Chang S, Wang H, He J, Huang Q. Efficient Multispike Learning for Spiking Neural Networks Using Probability-Modulated Timing Method. IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS 2019; 30:1984-1997. [PMID: 30418889 DOI: 10.1109/tnnls.2018.2875471] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Error functions are normally based on the distance between output spikes and target spikes in supervised learning algorithms for spiking neural networks (SNNs). Due to the discontinuous nature of the internal state of spiking neuron, it is challenging to ensure that the number of output spikes and target spikes kept identical in multispike learning. This problem is conventionally dealt with by using the smaller of the number of desired spikes and that of actual output spikes in learning. However, if this approach is used, information is lost as some spikes are neglected. In this paper, a probability-modulated timing mechanism is built on the stochastic neurons, where the discontinuous spike patterns are converted to the likelihood of generating the desired output spike trains. By applying this mechanism to a probability-modulated spiking classifier, a probability-modulated SNN (PMSNN) is constructed. In its multilayer and multispike learning structure, more inputs are incorporated and mapped to the target spike trains. A clustering rule connection mechanism is also applied to a reservoir to improve the efficiency of information transmission among synapses, which can map the highly correlated inputs to the adjacent neurons. Results of comparisons between the proposed method and popular the SNN algorithms showed that the PMSNN yields higher efficiency and requires fewer parameters.
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