1
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Fant L, Ghedini G. Biomass competition connects individual and community scaling patterns. Nat Commun 2024; 15:9916. [PMID: 39548097 PMCID: PMC11567973 DOI: 10.1038/s41467-024-54307-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Accepted: 11/06/2024] [Indexed: 11/17/2024] Open
Abstract
Both metabolism and growth scale sublinearly with body mass across species. Ecosystems show the same sublinear scaling between production and total biomass, but ecological theory cannot reconcile the existence of these nearly identical scalings at different levels of biological organization. We attempt to solve this paradox using marine phytoplankton, connecting individual and ecosystem scalings across three orders of magnitude in body size and biomass. We find that competitive interactions determined by biomass slow metabolism in a consistent fashion across species of different sizes. These effects dominate over species-specific peculiarities, explaining why community composition does not affect respiration and production patterns. The sublinear scaling of ecosystem production thus emerges from this metabolic density-dependence that operates across species, independently of the equilibrium state or resource regime. Our findings demonstrate the connection between individual and ecosystem scalings, unifying aspects of physiology and ecology to explain why growth patterns are so strikingly similar across scales.
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Affiliation(s)
- Lorenzo Fant
- Instituto Gulbenkian de Ciência (IGC), Oeiras, Portugal.
- Istituto Nazionale di Oceanografia e di Geofisica Sperimentale (OGS), Trieste, Italy.
| | - Giulia Ghedini
- Instituto Gulbenkian de Ciência (IGC), Oeiras, Portugal.
- Gulbenkian Institute for Molecular Medicine (GIMM), Oeiras, Portugal.
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2
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Rajakaruna H, Omta AW, Carr E, Talmy D. Linear scaling between microbial predator and prey densities in the global ocean. Environ Microbiol 2023; 25:306-314. [PMID: 36335554 PMCID: PMC10100078 DOI: 10.1111/1462-2920.16274] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Accepted: 10/30/2022] [Indexed: 11/08/2022]
Abstract
It has been proposed that microbial predator and prey densities are related through sublinear power laws. We revisited previously published biomass and abundance data and fitted Power-law Biomass Scaling Relationships (PBSRs) between marine microzooplankton predators (Z) and phytoplankton prey (P), and marine viral predators (V) and bacterial prey (B). We analysed them assuming an error structure given by Type II regression models which, in contrast to the conventional Type I regression model, accounts for errors in both the independent and the dependent variables. We found that the data support linear relationships, in contrast to the sublinear relationships reported by previous authors. The scaling exponent yields an expected value of 1 with some spread in different datasets that was well-described with a Gaussian distribution. Our results suggest that the ratios Z/P, and V/B are on average invariant, in contrast to the hypothesis that they systematically decrease with increasing P and B, respectively, as previously thought.
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Affiliation(s)
| | - Anne Willem Omta
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
| | - Eric Carr
- Department of Microbiology, University of Tennessee, Knoxville, TN, USA
| | - David Talmy
- Department of Microbiology, University of Tennessee, Knoxville, TN, USA
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3
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Perkins DM, Hatton IA, Gauzens B, Barnes AD, Ott D, Rosenbaum B, Vinagre C, Brose U. Consistent predator-prey biomass scaling in complex food webs. Nat Commun 2022; 13:4990. [PMID: 36008387 PMCID: PMC9411528 DOI: 10.1038/s41467-022-32578-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2021] [Accepted: 08/04/2022] [Indexed: 11/21/2022] Open
Abstract
The ratio of predator-to-prey biomass is a key element of trophic structure that is typically investigated from a food chain perspective, ignoring channels of energy transfer (e.g. omnivory) that may govern community structure. Here, we address this shortcoming by characterising the biomass structure of 141 freshwater, marine and terrestrial food webs, spanning a broad gradient in community biomass. We test whether sub-linear scaling between predator and prey biomass (a potential signal of density-dependent processes) emerges within ecosystem types and across levels of biological organisation. We find a consistent, sub-linear scaling pattern whereby predator biomass scales with the total biomass of their prey with a near ¾-power exponent within food webs - i.e. more prey biomass supports proportionally less predator biomass. Across food webs, a similar sub-linear scaling pattern emerges between total predator biomass and the combined biomass of all prey within a food web. These general patterns in trophic structure are compatible with a systematic form of density dependence that holds among complex feeding interactions across levels of organization, irrespective of ecosystem type. The ratio of predator-to-prey biomass is a key element in food webs. Here, the authors report a unified analysis of predator-prey biomass scaling in complex food webs, finding general patterns of sub-linear scaling across ecosystems and levels of organization.
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Affiliation(s)
- Daniel M Perkins
- School of Life and Health Sciences, Whitelands College, University of Roehampton, London, SW15 4JD, UK.
| | - Ian A Hatton
- Max Planck Institute for Mathematics in the Sciences, Leipzig, 04103, Germany.
| | - Benoit Gauzens
- EcoNetLab, German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany.,Institute of Biodiversity, Friedrich Schiller University Jena, Jena, Germany
| | - Andrew D Barnes
- Te Aka Mātuatua - School of Science, University of Waikato, Private Bag 3105, Hamilton, New Zealand
| | - David Ott
- Centre for Biodiversity Monitoring (Zbm), Zoological Research Museum Alexander Koenig, Adenauerallee 160, 53113, Bonn, Germany
| | - Benjamin Rosenbaum
- EcoNetLab, German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany.,Institute of Biodiversity, Friedrich Schiller University Jena, Jena, Germany
| | - Catarina Vinagre
- Marine and Environmental Sciences Centre, Faculdade de Ciências da Universidade de Lisboa, Lisbon, Portugal.,Centre of Marine Sciences, University of Algarve, Faro, Portugal
| | - Ulrich Brose
- EcoNetLab, German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, Leipzig, Germany.,Institute of Biodiversity, Friedrich Schiller University Jena, Jena, Germany
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4
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Fløjgaard C, Pedersen PBM, Sandom CJ, Svenning J, Ejrnæs R. Exploring a natural baseline for large‐herbivore biomass in ecological restoration. J Appl Ecol 2021. [DOI: 10.1111/1365-2664.14047] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Affiliation(s)
- Camilla Fløjgaard
- Department of Ecoscience Section for Biodiversity and Conservation Aarhus University Rønde Denmark
| | - Pil Birkefeldt Møller Pedersen
- Department of Biology Center for Biodiversity Dynamics in a Changing World (BIOCHANGE) Aarhus University Aarhus C Denmark
- Section for Ecoinformatics and Biodiversity Department of Biology Aarhus University Aarhus C Denmark
- Center for Landscape and Climate Research University of Leicester Leicester UK
| | | | - Jens‐Christian Svenning
- Department of Biology Center for Biodiversity Dynamics in a Changing World (BIOCHANGE) Aarhus University Aarhus C Denmark
- Section for Ecoinformatics and Biodiversity Department of Biology Aarhus University Aarhus C Denmark
| | - Rasmus Ejrnæs
- Department of Ecoscience Section for Biodiversity and Conservation Aarhus University Rønde Denmark
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5
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Chen Y, Angulo MT, Liu YY. Revealing Complex Ecological Dynamics via Symbolic Regression. Bioessays 2019; 41:e1900069. [PMID: 31617228 PMCID: PMC7339472 DOI: 10.1002/bies.201900069] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2019] [Revised: 09/14/2019] [Indexed: 12/24/2022]
Abstract
Understanding the dynamics of complex ecosystems is a necessary step to maintain and control them. Yet, reverse-engineering ecological dynamics remains challenging largely due to the very broad class of dynamics that ecosystems may take. Here, this challenge is tackled through symbolic regression, a machine learning method that automatically reverse-engineers both the model structure and parameters from temporal data. How combining symbolic regression with a "dictionary" of possible ecological functional responses opens the door to correctly reverse-engineering ecosystem dynamics, even in the case of poorly informative data, is shown. This strategy is validated using both synthetic and experimental data, and it is found that this strategy is promising for the systematic modeling of complex ecological systems.
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Affiliation(s)
- Yize Chen
- Channing Division of Network Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, 02115, USA
- Department of Electrical and Computer Engineering, University of Washington, Seattle, WA, 98195, USA
| | - Marco Tulio Angulo
- CONACyT - Institute of Mathematics, Universidad Nacional Autónoma de México, Juriquilla, 76230, México
| | - Yang-Yu Liu
- Channing Division of Network Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, 02115, USA
- Center for Cancer Systems Biology, Dana-Farber Cancer Institute, Boston, MA, 02115, USA
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6
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Lind EM, La Pierre KJ, Seabloom EW, Alberti J, Iribarne O, Firn J, Gruner DS, Kay AD, Pascal J, Wright JP, Yang L, Borer ET. Increased grassland arthropod production with mammalian herbivory and eutrophication: a test of mediation pathways. Ecology 2017; 98:3022-3033. [PMID: 28940315 DOI: 10.1002/ecy.2029] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/16/2017] [Revised: 08/28/2017] [Accepted: 08/31/2017] [Indexed: 11/07/2022]
Abstract
Increases in nutrient availability and alterations to mammalian herbivore communities are a hallmark of the Anthropocene, with consequences for the primary producer communities in many ecosystems. While progress has advanced understanding of plant community responses to these perturbations, the consequences for energy flow to higher trophic levels in the form of secondary production are less well understood. We quantified arthropod biomass after manipulating soil nutrient availability and wild mammalian herbivory, using identical methods across 13 temperate grasslands. Of experimental increases in nitrogen, phosphorus, and potassium, only treatments including nitrogen resulted in significantly increased arthropod biomass. Wild mammalian herbivore removal had a marginal, negative effect on arthropod biomass, with no interaction with nutrient availability. Path analysis including all sites implicated nutrient content of the primary producers as a driver of increased arthropod mean size, which we confirmed using 10 sites for which we had foliar nutrient data. Plant biomass and physical structure mediated the increase in arthropod abundance, while the nitrogen treatments accounted for additional variation not explained by our measured plant variables. The mean size of arthropod individuals was 2.5 times more influential on the plot-level total arthropod biomass than was the number of individuals. The eutrophication of grasslands through human activity, especially nitrogen deposition, thus may contribute to higher production of arthropod consumers through increases in nutrient availability across trophic levels.
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Affiliation(s)
- Eric M Lind
- Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, Minnesota, 55108, USA
| | - Kimberly J La Pierre
- Department of Biology, Colorado State University, Fort Collins, Colorado, 80523, USA
| | - Eric W Seabloom
- Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, Minnesota, 55108, USA
| | - Juan Alberti
- Instituto de Investigaciones Marinas y Costeras (UNMDP-CONICET), B7602GSD Mar del Plata, Buenos Aires, Argentina
| | - Oscar Iribarne
- Instituto de Investigaciones Marinas y Costeras (UNMDP-CONICET), B7602GSD Mar del Plata, Buenos Aires, Argentina
| | - Jennifer Firn
- Queensland University of Technology, Brisbane, Queensland, 4001, Australia
| | | | - Adam D Kay
- University of St. Thomas, St Paul, Minnesota, 55105, USA
| | - Jesus Pascal
- Instituto de Investigaciones Marinas y Costeras (UNMDP-CONICET), B7602GSD Mar del Plata, Buenos Aires, Argentina
| | | | - Louie Yang
- University of California, Davis, Davis, California, 95616, USA
| | - Elizabeth T Borer
- Department of Ecology, Evolution, and Behavior, University of Minnesota, St. Paul, Minnesota, 55108, USA
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Sun K, Zhang T, Tian Y. Theoretical study and control optimization of an integrated pest management predator-prey model with power growth rate. Math Biosci 2016; 279:13-26. [PMID: 27378223 DOI: 10.1016/j.mbs.2016.06.006] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2016] [Revised: 05/11/2016] [Accepted: 06/15/2016] [Indexed: 10/21/2022]
Abstract
This work presents a pest control predator-prey model, where rate of change in prey density follows a scaling law with exponent less than one and the control is by an integrated management strategy. The aim is to investigate the change in system dynamics and determine a pest control level with minimum control price. First, the dynamics of the proposed model without control is investigated by taking the exponent as an index parameter. And then, to determine the frequency of spraying chemical pesticide and yield releases of the predator, the existence of the order-1 periodic orbit of the control system is discussed in cases. Furthermore, to ensure a certain robustness of the adopted control, i.e., for an inaccurately detected species density or a deviation, the control system could be stabilized at the order-1 periodic orbit, the stability of the order-1 periodic orbit is verified by an stability criterion for a general semi-continuous dynamical system. In addition, to minimize the total cost input in pest control, an optimization problem is formulated and the optimum pest control level is obtained. At last, the numerical simulations with a specific model are carried out to complement the theoretical results.
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Affiliation(s)
- Kaibiao Sun
- School of Control Science and Engineering, Dalian University of Technology, Dalian 116024, China
| | - Tonghua Zhang
- Department of Mathematics, Swinburne University of Technology, Hawthorn VIC 3122, Australia
| | - Yuan Tian
- School of Information Engineering, Dalian University, Dalian 116622, China.
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