Chemical basis for selectivity of metal ions by the Bacillus subtilis cell wall

Biosorption of lead ion by lactic acid bacteria and the application in wastewater

Through the study of biosorption of Pb2+ by lactic acid bacteria, two strains called CN-011 and CN-005 with high tolerance and great adsorption to lead were screened. The minimum bactericidal concentration of lead ions for both CN-011 and CN-005 was 1.45 mmol/L. The optimal culture conditions for the removal of 30 mg/L lead ions were achieved by culturing lactic acid bacteria at an initial pH of 7.0, 37 °C and 120 rpm for 48 h. The adsorption rate of CN-011 and CN-005 for Pb2+ were 85.95% and 86.78%, respectively. In simulated wastewater samples, the average adsorption rate of Pb2+ was 73.38% for CN-011 and 74.15% for CN-005. The mechanism of biosorption was characterized by Fourier Transform infrared spectroscopy, Scanning Electron Microscope-Energy Dispersive Spectrometer, X-ray Photoelectron Spectroscopy, which revealed that Pb2+ mainly reacted with hydroxyl ions in peptidoglycan or polysaccharide, and carboxylate radical in teichoic acid or protein on the surface of lactic acid bacteria cell wall. The deposits produced on the bacterial surface were identified as lead oxide and lead nitrate.

Investigation of metal interactions with YrpE protein of Bacillus subtilis by a polyhistidine peptide model

The use of model peptides that can simulate the behaviour of a protein domain is a very successful analytical method to study the metal coordination sites in biological systems. Here we study zinc and copper binding ability of the sequence HTHEHSHDHSHAH, which serves as model for the metal interactions with YrpE, a putative metal-binding protein of the ZinT family identified in Bacillus subtilis. Compared to other ZinT proteins secreted by Gram-negative bacteria, the metal-coordination properties of YrpE N-terminal histidine-rich domain have not been yet characterized. Different independent analytical methods, aimed at providing information on the stability and structure of the formed species, have been employed, including potentiometric titrations, electrospray ionization mass spectrometry, UV-Vis spectrophotometry, circular dichroism and electron paramagnetic resonance spectroscopy. The obtained speciation models and equilibrium constants allowed to compare the metal-binding ability of the investigated polyhistidine sequence with that of other well-known histidine-rich peptides. Our thermodynamic results revealed that the YrpE domain HTHEHSHDHSHAH forms more stable metal complexes than other His-rich domains of similar ZinT proteins. Moreover, the studied peptide, containing the alternated (-XH-)n motif, proved to be even more effective than the His6-tag (widely used in immobilized metal ion affinity chromatography) in binding zinc ions.

Biosorption kinetics of cerium(III) and cobalt(II) from liquid wastes using individual bacterial species isolated from low-level liquid radioactive wastes

The existence of toxic heavy metals in the aquatic environment has emphasized a considerable exigency to develop several multifunctional biosorbents for their removal. Herein, three individual bacterial species of Cellulosimicrobium cellulans, Bacillus coagulans, and Microbacterium testaceum were successfully isolated from low-level liquid radioactive wastes. Their loading capacities towards cerium and cobalt metal ions were inclusivity inspected under variable operational parameters of pH, primary pollutant concentration, interaction time, temperature, stirring speed, and biosorbent dosage. By analyzing the influence of solution pH, concentration, temperature, biosorbent mass, and agitation speed on the biosorption kinetics, the biosorption process confirms pseudo-second-order kinetic, intraparticle diffusion, and Elovich equation. Remarkably, the isolated Microbacterium testaceum exhibited high loading capacities reaching 68.1 mg g^-1, and 49.6 mg g^-1 towards Ce(III), and Co(II) ions, respectively, at the initial concentration of 2.8 mM, pH 4.5, and 25 °C. Overall, the isolated bacterial species can potentially be offered up as a promising scavenger for Ce(III) and Co(II) from liquid waste effluents.

Photodynamic Inactivation of Bacteria in Ionic Environments Using the Photosensitizer SAPYR and the Chelator Citrate

Many studies show that photodynamic inactivation (PDI) is a powerful tool for the fight against pathogenic, multi-resistant bacteria and the closing of hygiene gaps. However, PDI studies have been frequently performed under standardized in vitro conditions comprising artificial laboratory settings. Under real life conditions, however, PDI encounters substances like ions, proteins, amino acids, and fatty acids, potentially hampering the efficacy PDI to an unpredictable extent. Thus, we investigated PDI with the phenalene-1-one based photosensitizer SAPYR against Escherichia coli and Staphylococcus aureus in the presence of calcium or magnesium ions, which are ubiquitous in potential fields of PDI applications like in tap water or on tissue surfaces. The addition of citrate should elucidate the potential as a chelator. The results indicate that PDI is clearly affected by such ubiquitous ions depending on its concentration and the type of bacteria. The application of citrate enhanced PDI especially for Gram-negative bacteria at certain ionic concentrations (e.g. CaCl₂ or MgCl₂ : 7.5 to 75 mmol l^-1 ). Citrate also improved PDI efficacy in tap water (especially for Gram-negative bacteria) and synthetic sweat solution (especially for Gram-positive bacteria). In conclusion, the use of chelating agents like citrate may facilitate the application of PDI under real life conditions.

Synergistic Antimicrobial Metal Oxide-Doped Phosphate Glasses; a Potential Strategy to Reduce Antimicrobial Resistance and Host Cell Toxicity

The emergence of antimicrobial resistant strains bacteria and a decline in the discovery of new antibiotics has led to the idea of combining various antimicrobials to treat resistant strains and/or polymicrobial infections. Metal oxide-doped glasses have been extensively investigated for their antimicrobial potential; however to date, most experiments have focused on single metal species in isolation. The present study investigates the antimicrobial potential of sodium calcium phosphates (P₂O₅)₅₀(Na₂O)₂₀(CaO)_30-X(MO)_X, where M is cobalt, copper, or zinc as single species. In addition, this work studied the effect of co-doping glasses containing two different metal ions (Co + Cu, Co + Zn, and Cu + Zn). The antimicrobial efficacy of all glasses was tested against Gram-positive (Staphylococcus aureus) and Gram-negative (Escherichia coli) bacterial strains, as well as a fungal strain (Candida albicans). Minimum inhibitory and bactericidal concentrations and time kill/synergy assays were used to assess the antimicrobial activity. An enhanced antimicrobial effect, at 5 mg/mL concentration, was exhibited by cobalt, copper, and zinc oxide glasses alone and in combinations. A synergistic antimicrobial effect was observed by Cu + Co and Cu + Zn against E. coli and Cu + Zn against S. aureus.

Coprinus comatus endophytic bacteria characteristics and mechanisms for the cadmium resistance

Characteristics and resistant mechanisms of macro-fungus endophytic bacteria to cadmium (Cd) have not been well defined. Strains L1 and L3 with Cd-resistant capacity were isolated from the fruiting body of Coprinus comatus, which were identified as Bacillus sp. Under the stress of Cd, the morphologies of both L1 and L3 changed to reduce the threat of Cd. The results of Fourier Transform Infrared Spectrometry indicated that functional groups such as -OH, -COOH, and -NH₂ participated in the Cd adsorption process. The contents of Cd adsorbed on the cell wall of L1 were 83.46-174.51% higher than that of L3. On the contrary, the contents of Cd accumulated in L1 cytoplasm were 38.77-74.77% lower than that of L3. As the level of Cd increased from 10 to 30 mg/L, the percentages of Cd distributed on the cell walls of L1 and L3 increased by 42.43% and 26.78%, respectively. The results also revealed that the contents of Cd absorbed by the sterilized strains L1 and L3 were 47.67-64.94% and 8.65-78.63% higher than that of living ones, respectively. In addition, the proline production of L1 was 23.75-109.68% higher than that of L3, while the malondialdehyde (MDA) production of L1 was 0.96-15.60% lower than that of L3. Thus, through the comparison of endophytic bacterial physiological responses, the possible characteristics and resistant mechanisms of macro-fungus endophytic bacteria under Cd stress were firstly reported.

Microbially Catalyzed Biomaterials for Bone Regeneration

Bone is a complex mineralized tissue composed of various organic (proteins, cells) and inorganic (hydroxyapatite, calcium carbonate) substances with micro/nanoscale structures. To improve interfacial bioactivity of bone-implanted biomaterials, extensive efforts are being made to fabricate favorable biointerface via surface modification. Inspired by microbially catalyzed mineralization, a novel concept to biologically synthesize the micro/nanostructures on bioceramics, microbial-assisted catalysis, is presented. It involves three processes: bacterial adhesion on biomaterials, production of CO₃ ^2- assisted by bacteria, and nucleation and growth of CaCO₃ nanocrystals on the surface of bioceramics. The microbially catalyzed biominerals exhibit relatively uniform micro/nanostructures on the surface of both 2D and 3D α-CaSiO₃ bioceramics. The topographic and chemical cues of the grown micro/nanostructures present excellent in vitro and in vivo bone-forming bioactivity. The underlying mechanism is closely related to the activation of multiple biological processes associated with bone regeneration. The study offers a microbially catalytic concept and strategy of fabricating micro/nanostructured biomaterials for tissue regeneration.

Bacterial survival strategies and responses under heavy metal stress: a comprehensive overview

Heavy metals bring long-term hazardous consequences and pose a serious threat to all life forms. Being non-biodegradable, they can remain in the food webs for a long period of time. Metal ions are essential for life and indispensable for almost all aspects of metabolism but can be toxic beyond threshold level to all living beings including microbes. Heavy metals are generally present in the environment, but many geogenic and anthropogenic activities has led to excess metal ion accumulation in the environment. To survive in harsh metal contaminated environments, bacteria have certain resistance mechanisms to metabolize and transform heavy metals into less hazardous forms. This also gives rise to different species of heavy metal resistant bacteria. Herein, we have tried to incorporate the different aspects of heavy metal toxicity in bacteria and provide an up-to-date and across-the-board review. The various aspects of heavy metal biology of bacteria encompassed in this review includes the biological notion of heavy metals, toxic effect of heavy metals on bacteria, the factors regulating bacterial heavy metal resistance, the diverse mechanisms governing bacterial heavy metal resistance, bacterial responses to heavy metal stress, and a brief overview of gene regulation under heavy metal stress.

Green synthesis of multifunctional carbon coated copper oxide nanosheets and their photocatalytic and antibacterial activities

The studies of metal oxides in environmental remediation of chemical and biological pollutants are gaining colossal importance. Herein, we report the facile synthesis of multifunctional copper oxide nanosheets (CuO NS) using an aqueous extract of Rhazya stricta. The phytochemical investigation of R. stricta indicated the presence of saponins, tannins, and reducing sugars, responsible for the reduction and stabilization of CuO NS. A UV–Visible spectrophotometer initially confirmed the fabrication of CuO NS with specific Surface Plasmon Resonance at 294 nm. Field Emission Scanning Electron Microscopy (FE-SEM), Fourier-transform infrared spectroscopy FTIR, and XRD were further used to characterize the CuO NS. The obtained CuO NS were poly-dispersed with an average size of 20 nm. Interestingly these particles were aligned together in 3D cubical sheets layered above each other via self-assembly. The as-synthesized CuO NS showed enhanced antibacterial potential (17.63 mm, overall mean inhibition zone) in comparison to the known antibiotics (11.51 mm, overall mean inhibition zone) against both Solanaceous crop's wilt-causing bacteria (Ralstonia solanacearum and Clavibacter michiganensis). Furthermore, the appreciable photocatalytic potential of CuO NS has also been observed, causing 83% degradation of methylene blue (MB) upon solar irradiation. The synthesis methodology is devoid of any toxic waste or by-products. It could be used to produce eco-friendly CuO nanomaterial for industrial uses.

Overview on the role of heavy metals tolerance on developing antibiotic resistance in both Gram-negative and Gram-positive bacteria

Environmental health is a critical concern, continuously contaminated by physical and biological components (viz., anthropogenic activity), which adversely affect on biodiversity, ecosystems and human health. Nonetheless, environmental pollution has great impact on microbial communities, especially bacteria, which try to evolve in changing environment. For instance, during the course of adaptation, bacteria easily become resistance to antibiotics and heavy metals. Antibiotic resistance genes are now one of the most vital pollutants, provided as a source of frequent horizontal gene transfer. In this review, the environmental cause of multidrug resistance (MDR) that was supposed to be driven by either heavy metals or combination of environmental factors was essentially reviewed, especially focussed on the correlation between accumulation of heavy metals and development of MDR by bacteria. This kind of correlation was seemed to be non-significant, i.e. paradoxical. Gram-positive bacteria accumulating much of toxic heavy metal (i.e. highly stress tolerance) were unlikely to become MDR, whereas Gram-negative bacteria that often avoid accumulation of toxic heavy metal by efflux pump systems were come out to be more prone to MDR. So far, other than antibiotic contaminant, no such available data strongly support the direct influence of heavy metals in bacterial evolution of MDR; combinations of factors may drive the evolution of antibiotic resistance. Therefore, Gram-positive bacteria are most likely to be an efficient member in treatment of industrial waste water, especially in the removal of heavy metals, perhaps inducing the less chance of antibiotic resistance pollution in the environment.

Bacteria-induced mineral precipitation: a mechanistic review

Micro-organisms contribute to Earth's mineral deposits through a process known as bacteria-induced mineral precipitation (BIMP). It is a complex phenomenon that can occur as a result of a variety of physiological activities that influence the supersaturation state and nucleation catalysis of mineral precipitation in the environment. There is a good understanding of BIMP induced by bacterial metabolism through the control of metal redox states and enzyme-mediated reactions such as ureolysis. However, other forms of BIMP often cannot be attributed to a single pathway but rather appear to be a passive result of bacterial activity, where minerals form as a result of metabolic by-products and surface interactions within the surrounding environment. BIMP from such processes has formed the basis of many new innovative biotechnologies, such as soil consolidation, heavy metal remediation, restoration of historic buildings and even self-healing concrete. However, these applications to date have primarily incorporated BIMP-capable bacteria sampled from the environment, while detailed investigations of the underpinning mechanisms have been lagging behind. This review covers our current mechanistic understanding of bacterial activities that indirectly influence BIMP and highlights the complexity and connectivity between the different cellular and metabolic processes involved. Ultimately, detailed insights will facilitate the rational design of application-specific BIMP technologies and deepen our understanding of how bacteria are shaping our world.

Effective removal of lead (II) using chitosan and microbial adsorbents: Response surface methodology (RSM)

The ability of chitosan (1% w/v), Bifidobacterium longum (10⁸ CFU mL-¹) and Saccharomyces cerevisiae (10⁸ CFU mL-¹) separately or in combination (chitosan/B. longum, chitosan/S. cerevisiae, B. longum/S. cerevisiae) was assessed for lead (II) removal from aqueous solutions. The results showed chitosan/B. longum adsorbent had higher adsorption percentage in comparison with other adsorbents (p < 0.05). It was selected as the most efficient adsorbent and the effect of process variables including initial metal concentration (0.01-5 mg L^-1), contact time (5-180 min), temperature (4-37 °C) and pH (3-6) on the its removal efficiency was evaluated with a Box-Behnken design. Twenty-seven test runs were performed and the optimal conditions for metal adsorption was observed at metal concentration of 2.5 mg L^-1, contact time of 180 min, temperature of 37 °C and pH 4.5. The maximum lead (II) adsorption yield under optimal conditions was 97.6%. The foreign ions didn't diminish lead (II) adsorption by chitosan/B. longum and it had high selectivity toward the lead (II). Adsorption behavior was analyzed using the Freundlich and the Langmuir isotherms. The correlation coefficients (R²) demonstrated the Langmuir model had a better description on metal adsorption process. Overall, isotherms revealed chemisorption and physisorption were probably involved in metal adsorption on adsorbent.

Processing of Metals and Metalloids by Actinobacteria: Cell Resistance Mechanisms and Synthesis of Metal(loid)-Based Nanostructures

Metal(loid)s have a dual biological role as micronutrients and stress agents. A few geochemical and natural processes can cause their release in the environment, although most metal-contaminated sites derive from anthropogenic activities. Actinobacteria include high GC bacteria that inhabit a wide range of terrestrial and aquatic ecological niches, where they play essential roles in recycling or transforming organic and inorganic substances. The metal(loid) tolerance and/or resistance of several members of this phylum rely on mechanisms such as biosorption and extracellular sequestration by siderophores and extracellular polymeric substances (EPS), bioaccumulation, biotransformation, and metal efflux processes, which overall contribute to maintaining metal homeostasis. Considering the bioprocessing potential of metal(loid)s by Actinobacteria, the development of bioremediation strategies to reclaim metal-contaminated environments has gained scientific and economic interests. Moreover, the ability of Actinobacteria to produce nanoscale materials with intriguing physical-chemical and biological properties emphasizes the technological value of these biotic approaches. Given these premises, this review summarizes the strategies used by Actinobacteria to cope with metal(loid) toxicity and their undoubted role in bioremediation and bionanotechnology fields.

Chemically Modified Biosorbents and Their Role in the Removal of Emerging Pharmaceutical Waste in the Water System

Presence of pharmaceutically active compounds (PACs) as emerging contaminants in water is a major concern. Recent reports have confirmed the presence of PACs in natural and wastewater systems, which have caused several problems indicating the urgent need for their removal. The current review evaluates the role of chemically modified biosorbents in the removal of PACs in water. Reported biosorbents include plant and animal solid waste, microorganisms and bio-composite. Bio-composites exhibited better prospects when compared with other biosorbents. Types of chemical treatment reported include acid, alkaline, solvent extraction, metal salt impregnation and surface grafting, with alkaline treatment exhibiting better results when compared with other treatments. The biosorption processes mostly obeyed the pseudo-second-order model and the Langmuir isotherm model in a process described mainly by ionic interaction. Desorption and regeneration capacity are very important in selecting an appropriate biosorbent for the biosorption process. Depending on the type of biosorbent, the cost of water treatment per million liters of water was estimated as US $10–US $200, which presents biosorption as a cheap process compared to other known water treatment processes. However, there is a need to conduct large-scale studies on the biosorption process for removing PACs in water.

Cadmium binding characterization and mechanism of a newly isolated strain Cystobasidium oligophagum QN-3

The aim of this study was to screen a strain for the removal of Cd²⁺ from aqueous solution and investigate the characterization and mechanism of the Cd²⁺ binding process. A novel strain of yeast showed high tolerance of cadmium, namely Cystobasidium oligophagum QN-3, was isolated from soils, which could resist 22,000 mg/L and 18,000 mg/L Cd²⁺ on PDA (potato dextrose agar) plate and in PDA liquid medium, respectively. Cd²⁺ binding experiment showed that the strain could remove Cd²⁺ from aqueous solution effectively, the maximum Cd²⁺ removal rate of 84.45% was achieved at initial Cd²⁺ concentration 30 mg/L. Scanning electron microscopy (SEM) analysis revealed that sorption of Cd²⁺ by cells could be associated with changes in the cell surface morphology. Fourier transform-infrared spectroscopy (FTIR) analysis confirmed the important role of the functional groups OH, CO, NH₂ , COO, PO, and CH on the cell surface in the binding of Cd²⁺ . The comparison of the binding ability of different cellular parts indicated a significant role of the cell wall played in the Cd²⁺ binding process. Pretreatment of the cells by boiling or ultrasonication could improve the biosorption capacity of QN-3. In addition, QN-3 exhibited selective and preferential property of binding capacity for other heavy metals, such as Pb²⁺ , Cu²⁺ , Cd²⁺ , Zn²⁺ , and Ni²⁺ . These data suggested the promising use of Cystobasidium oligophagum QN-3 as an effective and friendly biosorbent for cadmium or other heavy metals decontamination in the environment.

Distinct mechanisms in the heteroaggregation of silver nanoparticles with mineral and microbial colloids

Attachment to solids is an important process for determining nanomaterial transport and their fate in environments. Here we revealed distinct behaviours in the attachment of silver nanoparticles (AgNPs) to kaolin and bacterial cells. We found preferential attachment of AgNPs to the edges of kaolin. Decreasing pH or adding metal ions promoted AgNP-kaolin attachment due to the increase of positive charge on kaolin's surfaces. Multivalent cations (Mg²⁺ and Ca²⁺) induced stronger enhancement than monovalent cations (Na⁺, K⁺ and Ag⁺), which demonstrated the positive role of electrostatic interaction in AgNP-kaolin attachment. However, the presence of metal ions inhibited AgNP binding to bacterial cells. The inhibitive effect was significantly correlated with solubility product of metal ions, which implied a chemical reaction mechanism in AgNP-cell attachment. In kaolin system, humic acid (HA) can considerably inhibit AgNP attachment and diminish the enhanced effects induced by metal ions. In contrast, in bacterial cell system, HA reduced the inhibitive effect of metal ions for AgNP adsorption, although HA itself had negligible effect on AgNP-cell attachment. Taken together, our results demonstrated the contribution of electrostatic attraction versus chemical interaction to the attachment of AgNPs to kaolin or bacterial cells, providing fundamental support to understand the attachment of nanomaterials to inorganic and organic solids in the environments.

Bioremediation Options for Heavy Metal Pollution

BACKGROUND

Rapid industrialization and anthropogenic activities such as the unmanaged use of agro-chemicals, fossil fuel burning and dumping of sewage sludge have caused soils and waterways to be severely contaminated with heavy metals. Heavy metals are non-biodegradable and persist in the environment. Hence, remediation is required to avoid heavy metal leaching or mobilization into environmental segments and to facilitate their extraction.

OBJECTIVES

The present work briefly outlines the environmental occurrence of heavy metals and strategies for using microorganisms for bioremediation processes as reported in the scientific literature.

METHODS

Databases were searched from different libraries, including Google Scholar, Medline and Scopus. Observations across studies were then compared with the standards for discharge of environmental pollutants.

DISCUSSION

Bioremediation employs microorganisms for removing heavy metals. Microorganisms have adopted different mechanisms for bioremediation. These mechanisms are unique in their specific requirements, advantages, and disadvantages, the success of which depends chiefly upon the kind of organisms and the contaminants involved in the process.

CONCLUSIONS

Heavy metal pollution creates environmental stress for human beings, plants, animals and other organisms. A complete understanding of the process and various alternatives for remediation at different steps is needed to ensure effective and economic processes.

COMPETING INTERESTS

The authors declare no competing financial interests.

Anticancer Activity of Copper Oxide Nanoparticles Synthesized from Brassia actinophylla Flower Extract

There are many methods to synthesize metal and metal oxide nanoparticles. In this paper, copper oxide nanoparticles have been synthesized by solution combustion method using Brassia actinophylla i.e. Schefflera actinophylla flower extract belongs to Araliaceae family. The importance of solution combustion is one of the easy and simplest methods for the synthesis of metal oxide nanoparticle. The CuO nanoparticles were synthesized at various temperatures and the characterization has been carried out by UV, FTIR, PXRD, SEM, TEM and EDAX analysis. At lower temperature, the peak was not observed but at 400 ºC, the UV peak was observed at 340 nm. The FTIR peaks observed at 1000-500 cm-1 confirms again the presence of CuO nanoparticles. The monoclinic phase and crystalline structure of nanoparticles were revealed by PXRD pattern, by Scherrer′s method the average crystalline sizes were found to be in the range of 15 to 24 nm. The size and the shape of nanoparticles were confirmed by SEM and TEM reports. The SEM images of nanoparticles show spherical in shape and free from agglomeration. TEM analysis reports the nanoparticle sizes ranging from 2 to 20 nm. The percentage of copper (52 %) and oxygen (26 %) elements were recorded in the EDAX analysis. The study of size and stability of nanoparticles were done by zeta potential values. The antibacterial activity of CuO nanoparticles were carried out against Staphylococcus aureus and Escherichia coli bacteria's by agar well diffusion method. The MTT assay was performed in order to check the anticancer activity of CuO nanoparticles against HT-29 colon cancer cells.

Multimetal tolerance mechanisms in bacteria: The resistance strategies acquired by bacteria that can be exploited to 'clean-up' heavy metal contaminants from water

Heavy metal pollution is one of the major environmental concerns worldwide. Toxic heavy metals when untreated get accumulated in environment and can pose severe threats to living organisms. It is well known that metals play a major role either directly or indirectly in different metabolic processes of bacteria. This allows bacterial cells to grow even in the presence of some toxic heavy metals. Microbial biotechnology has thus emerged as an effective and eco friendly solution in recent years for bioremediation of heavy metals. Therefore, this review is focused on summarising bacterial adaptation mechanisms for various heavy metals. It also shares some applications of have metal tolerant bacteria in bioremediation. Bacteria have evolved a number of processes for heavy metal tolerance viz., transportation across cell membrane, accumulation on cell wall, intra as well as extracellular entrapment, formation of complexes and redox reactions which form the basis of different bioremediation strategies. The genetic determinants for most of these resistances are located on plasmids however some may be chromosomal as well. Bacterial cells can uptake heavy by both ATP dependent and ATP independent processes. Bacterial cell wall also plays a very important role in accumulating heavy metals by bacterial cells. Gram-positive bacteria accumulate much higher concentrations of heavy metals on their cell walls than that of metals gram -ve bacteria. The role of bacterial metallothioneins (MTs) in heavy metal has also been reported. Thus, heavy metal tolerant bacteria are important for bioremediation of heavy metal pollutants from areas containing high concentrations of particular heavy metals.

Sorption mechanism and distribution of cadmium by different microbial species

Bioremediation programs of cadmium (Cd) by microorganisms have being proposed, but the underlying mechanism of the remediation ion remains unexplored. Here, the sorption efficiency and subcellular fraction distribution of Cd in three selected microbial species were investigated. Our results showed that both species of the microorganisms and initial Cd concentrations strongly affected the Cd sorption capacity. In the three microbial species, the Cd removal efficiency increased with decreased Cd concentrations. Specifically, Hansenula anomala removed the highest Cd ions in low concentration of 0.05 mg L^-1; while in medium concentration of 0.5 mg L^-1 and high concentration of 5 mg L^-1, Bacillus subtilis removed the highest Cd ions. The subcellular fractionation allocation showed that Cd was mainly allocated on cell wall (mantle and inner wall) in Pseudomonas stutzeri and B. subtilis, while cell cytomembrane accumulated similar amount of Cd compared to the cell wall of H. anomala at concentration of 0.5 mg L^-1. Meanwhile, the Cd distributions on cell subcellular fractionation of the three species changed along the contact times, suggesting varied migration models during the biosorption process. Moreover, the functional groups involved in biosorption differed among the species based on Fourier Transform Infrared (FTIR) analysis. Our results have important implications for developing and improving Cd remediation by microorganisms, which is a low-cost and environmentally friendly bioremediation strategy of Cd pollution in environments.

Equilibrium Isotherm, Kinetic Modeling, Optimization, and Characterization Studies of Cadmium Adsorption by Surface-Engineered Escherichia coli

Background

Amongst the methods that remove heavy metals from environment, biosorption approaches have received increased attention because of their environmentally friendly and cost-effective feature, as well as their superior performances.

Methods

In the present study, we investigated the ability of a surface-engineered Escherichia coli, carrying the cyanobacterial metallothionein on the cell surface, in the removal of Ca (II) from solution under different experimental conditions. The biosorption process was optimized using central composite design. In parallel, the kinetics of metal biosorption was studied, and the rate constants of different kinetic models were calculated.

Results

Cadmium biosorption is followed by the second-order kinetics. Freundlich and Langmuir equations were used to analyze sorption data; characteristic parameters were determined for each adsorption isotherm. The biosorption process was optimized using the central composite design. The optimal cadmium sorption capacity (284.69 nmol/mg biomass) was obtained at 40°C (pH 8) and a biomass dosage of 10 mg. The influence of two elutants, EDTA and CaCl2, was also assessed on metal recovery. Approximately, 68.58% and 56.54% of the adsorbed cadmium were removed by EDTA and CaCl2 during desorption, respectively. The Fourier transform infrared spectrophotometer (FTIR) analysis indicated that carboxyl, amino, phosphoryl, thiol, and hydroxyl are the main chemical groups involved in the cadmium bioadsorption process.

Conclusion

Results from this study implied that chemical adsorption on the heterogeneous surface of E. coli E and optimization of adsorption parameters provides a highly efficient bioadsorbent.

Assessment of Resistance and Bioremediation Ability of Lactobacillus Strains to Lead and Cadmium

Cadmium (Cd) and lead (Pb) are heavy metals, important environmental pollutants, and potent toxicants to organism. Lactic acid bacteria (LAB) have been reported to remove Cd and Pb from solutions and therefore represent a useful tool for decontamination of food and beverages from heavy metals. Heavy metal ion binding by LAB was reported as metabolism-independent surface process. In this work ten Lactobacillus strains were investigated with respect to hydrophobicity, Lewis acid-base, and electrostatic properties of their outer cell surface in order to characterize their Cd and Pb removal capacity. Seven L. plantarum and L. fermentum strains were shown to remove Cd from culture medium. The metabolism-dependent accumulation mechanism of Cd removal was proposed based on extended character of Cd binding and lack of correlation between any of the surface characteristics and Cd removal. The results of this study should be considered when selecting probiotic strains for people at risk of Cd exposure.

Technological Approach of Bioremediation Using Microbial Tools

Bioremediation is applied to eliminate various contaminants, such as organic, inorganic or other pollutants from the environment. Environment worldwide is under great stress due to industrialization and human interfering on the limited natural resources. The release of chemicals pollution needs several techniques to treat some of these chemicals, but due to their cost, new technologies should be developing in order to create cost-effective and eco-friendly bioremediation technologies for environmental conversions. Bioremediation is an increasingly popular using microbial and algae strains for degrading waste contaminants. It is using of microorganisms and its enzymes to protect the environment from severe pollution. Bioremediation may be employed in order to eliminate specific contaminants, such as chlorinated pesticides or other pollutants from the environment. Microorganisms degrade the different pollutants in a natural environment but some modifications can be done to enhance its degradation efficiency at a faster rate in a limited time frame by using the genetically engineered microorganisms and microalgae. In this chapter, the role of the bacteria, fungi and algae in bioremediation of different environmental pollutants was highlighted.

Global response of Acidithiobacillus ferrooxidans ATCC 53993 to high concentrations of copper: A quantitative proteomics approach

Acidithiobacillus ferrooxidans is used in industrial bioleaching of minerals to extract valuable metals. A. ferrooxidans strain ATCC 53993 is much more resistant to copper than other strains of this microorganism and it has been proposed that genes present in an exclusive genomic island (GI) of this strain would contribute to its extreme copper tolerance. ICPL (isotope-coded protein labeling) quantitative proteomics was used to study in detail the response of this bacterium to copper. A high overexpression of RND efflux systems and CusF copper chaperones, both present in the genome and the GI of strain ATCC 53993 was found. Also, changes in the levels of the respiratory system proteins such as AcoP and Rus copper binding proteins and several proteins with other predicted functions suggest that numerous metabolic changes are apparently involved in controlling the effects of the toxic metal on this acidophile.

SIGNIFICANCE

Using quantitative proteomics we overview the adaptation mechanisms that biomining acidophiles use to stand their harsh environment. The overexpression of several genes present in an exclusive genomic island strongly suggests the importance of the proteins coded in this DNA region in the high tolerance of A. ferrooxidans ATCC 53993 to metals.

Application of lactic acid bacteria in removing heavy metals and aflatoxin B1 from contaminated water

In this study selected lactic acid bacteria (LAB, Lactobacillus acidophilus, Lactobacillus rhamnosus, Lactobacillus plantrium and Streptococcus thermophiles) and probiotic bacteria (Bifidobacterium angulatum) were tested for their ability in removing heavy metals (HM) including cadmium (Cd), lead (Pb) and arsenic (As) as well as aflatoxin B1 (AFB1) from contaminated water. The biosorption parameters (pH, bacterial concentration, contact time and temperature) of removal using individual as well as mixed LAB and probiotic bacteria were studied. Removal of HM and AFB1 depended on the strain, wherein the process was strongly pH-dependent with high removal ability at a pH close to neutral. The increase in bacterial concentration enhanced the removal of Cd, Pb and As. Also, increasing of contact time and temperature increased the ability of LAB to remove HM. The effect of contact time on Cd removal was slightly different when freshly cultured cells were used. The removal of Cd, Pb and As decreased with the increase in the initial metal concentration. The most effective HM removers were Lactobacillus acidophilus and Bifidobacterium angulatum. The system was found to be adequate for concentrations of HM under investigation. At the end of the operation, the concentration of HM reached the level allowed by the World Health Organization regulations.

Colorimetric As (V) detection based on S-layer functionalized gold nanoparticles

Herein, we present simple and rapid colorimetric and UV/VIS spectroscopic methods for detecting anionic arsenic (V) complexes in aqueous media. The methods exploit the aggregation of S-layer-functionalized spherical gold nanoparticles of sizes between 20 and 50 nm in the presence of arsenic species. The gold nanoparticles were functionalized with oligomers of the S-layer protein of Lysinibacillus sphaericus JG-A12. The aggregation of the nanoparticles results in a color change from burgundy-red for widely dispersed nanoparticles to blue for aggregated nanoparticles. A detailed signal analysis was achieved by measuring the shift of the particle plasmon resonance signal with UV/VIS spectroscopy. To further improve signal sensitivity, the influence of larger nanoparticles was tested. In the case of 50 nm gold nanoparticles, a concentration of the anionic arsenic (V) complex lower than 24 ppb was detectable.

Study on the coordination structure of pt sorbed on bacterial cells using x-ray absorption fine structure spectroscopy

Biosorption has been intensively investigated as a promising technology for the recovery of precious metals from solution. However, the detailed mechanism responsible for the biosorption of Pt on a biomass is not fully understood because of a lack of spectroscopic studies. We applied X-ray absorption fine structure spectroscopy to elucidate the coordination structure of Pt sorbed on bacterial cells. We examined the sorption of Pt(II) and Pt(IV) species on bacterial cells of Bacillus subtilis and Shewanella putrefaciens in NaCl solutions. X-ray absorption near-edge structure and extended X-ray absorption fine structure (EXAFS) of Pt-sorbed bacteria suggested that Pt(IV) was reduced to Pt(II) on the cell’s surface, even in the absence of an organic material as an exogenous electron donor. EXAFS spectra demonstrated that Pt sorbed on bacterial cells has a fourfold coordination of chlorine ions, similar to PtCl₄^2-, which indicated that sorption on the protonated amine groups of the bacterial cells. This work clearly demonstrated the coordination structure of Pt sorbed on bacterial cells. The findings of this study will contribute to the understanding of Pt biosorption on biomass, and facilitate the development of recovery methods for rare metals using biosorbent materials.

Proteomic profile of dormancy within Staphylococcus epidermidis biofilms using iTRAQ and label-free strategies

Staphylococcus epidermidis is an important nosocomial bacterium among carriers of indwelling medical devices, since it has a strong ability to form biofilms. The presence of dormant bacteria within a biofilm is one of the factors that contribute to biofilm antibiotic tolerance and immune evasion. Here, we provide a detailed characterization of the quantitative proteomic profile of S. epidermidis biofilms with different proportions of dormant bacteria. A total of 427 and 409 proteins were identified by label-free and label-based quantitative methodologies, respectively. From these, 29 proteins were found to be differentially expressed between S. epidermidis biofilms with prevented and induced dormancy. Proteins overexpressed in S. epidermidis with prevented dormancy were associated with ribosome synthesis pathway, which reflects the metabolic state of dormant bacteria. In the opposite, underexpressed proteins were related to catalytic activity and ion binding, with involvement in purine, arginine, and proline metabolism. Additionally, GTPase activity seems to be enhanced in S. epidermidis biofilm with induced dormancy. The role of magnesium in dormancy modulation was further investigated with bioinformatics tool based in predicted interactions. The main molecular function of proteins, which strongly interact with magnesium, was nucleic acid binding. Different proteomic strategies allowed to obtain similar results and evidenced that prevented dormancy led to an expression of a markedly different repertoire of proteins in comparison to the one of dormant biofilms.

Revised model of calcium and magnesium binding to the bacterial cell wall

Metals bind to the bacterial cell wall, yet the binding mechanisms and affinity constants are not fully understood. The cell wall of gram positive bacteria is characterized by a thick layer of peptidoglycan and anionic teichoic acids anchored in the cytoplasmic membrane as lipoteichoic acid or covalently bound to the cell wall as wall teichoic acid. The polyphosphate groups of teichoic acid provide one-half of the metal binding sites for calcium and magnesium, which contradicts previous reports that calcium binding is 100 % dependent on teichoic acid. The remaining binding sites are formed with the carboxyl units of peptidoglycan. In this work we report equilibrium association constants and total metal binding capacities for the interaction of calcium and magnesium ions with the bacterial cell wall. Metal binding is much stronger than previously reported. Curvature of Scatchard plots from the binding data and the resulting two regions of binding affinity suggest the presence of negative cooperative binding, which means that the binding affinity decreases as more ions become bound to the sample. For Ca(2+), Region I has a KA = (1.0 ± 0.2) × 10(6) M(-1) and Region II has a KA = (0.075 ± 0.058) × 10(6) M(-1). For Mg(2+), KA1 = (1.5 ± 0.1) × 10(6) and KA2 = (0.17 ± 0.10) × 10(6). A binding capacity (η) is reported for both regions. However, since binding is still occurring in Region II, the total binding capacity is denoted by η2, which are 0.70 ± 0.04 and 0.67 ± 0.03 µmol/mg for Ca(2+) and Mg(2+) respectively. These data contradict the current paradigm of only a single metal affinity value that is constant over a range of concentrations. We also find that measurement of equilibrium binding constants is highly sample dependent. This suggests a role for diffusion of metals through heterogeneous cell wall fragments. As a result, we are able to reconcile many contradictory theories that describe binding affinity and the binding mode of divalent metal cations.

Enzyme-based glucose delivery: a possible tool for biosorbent preparation for heavy metal removal from polluted environments

This study was performed to examine the influence of the controlled glucose supply technology, EnBase(®) Flo, on growth and heavy metals uptake capacity of two Bacillus strains isolated from food industry wastewater. Bacillus sp. growth on EnBase Flo (mineral salt complex medium containing starch-derived polymer as substrate) was examined in 24 deep well plates, controlling the glucose amount release by adding two amyloglucosidase concentrations (3 and 6 UL(-1)). Adsorption of the heavy metals Zn(2+), Cd(2+) and Pb(2+) was assessed in a single component system using synthetic metal solutions and as a function of the initial concentration of adsorbate, equilibrium time and removal efficiency. The Langmuir and Freundlich adsorption models were used for the mathematical description of the biosorption equilibrium and isotherm constants. A pseudo second-order model was applied to describe the uptake rate for two isolates. The EnBase(®) Flo technology improved the cells growth over ten times after 24 h of fed-batch cultivation. The EnBase(®) Flo technology improved the Cd(2+) and Pb(2+) uptake capacity of the bacterial strains by approximately 55 and 44 %, respectively. The biosorption of each metal was fairly rapid (within 30 min), which could be an advantage for large scale treatment of contaminated sites. This initial study may be a basis for future developments to apply EnBase Flo for the biomass production used further as biosorbent for heavy metal removal from aqueous solutions.

Synthesis and concentration dependent antibacterial activities of CuO nanoflakes

We report, synthesis and antibacterial activities of CuO nanoflakes. CuO nanoparticles are prepared at room temperature through sol-gel method. X-ray diffraction studies show the particles are monoclinic (crystalline) in nature. Scanning electron microscopy (SEM) images clearly show that the prepared particles are flake like in structure. Fourier transform infrared (FTIR) spectra exhibits three different bands that correspond to the Au and Bu modes. Antibacterial studies were performed on Shigella flexneri, Staphylococcus aureus, Staphylococcus epidermidis, Salmonella typhimurium, Bacillus subtilis, Escherichia coli, Vibrio cholera, Pseudomonas aeruginosa and Aeromonas liquefaciens bacterial strains. Among these bacterial strains, S. flexneri and B. subtilis are most sensitive to copper oxide nanoparticles than the positive control (Penicillin G) and S. typhimurium strain shows the less sensitive. Results show that sensitivity is highly dependent on the concentrations of CuO nanoflakes.

Removal of Cr(III), Ni(II) and Cu(II) by poly(γ-glutamic acid) from Bacillus subtilis NX-2

Poly(gamma-glutamic acid) (gamma-PGA) derived from Bacillus subtilis NX-2 was investigated as a sorbent for heavy metal ions in batch adsorption experiments. The results showed that the heavy metal adsorption capacity of gamma-PGA enhanced with the increase of pH, in the following order: Cr(III) > Cu(II) > Ni(II), within the pH range 3-5. The Langmuir sorption model effectively described the metal sorption of y-PGA through the experiments of isotherm sorption, and it was deduced that the affinity of gamma-PGA for metals was following the sequence: Cr(III) > Cu(II) > Ni(II). Gamma-PGA was also used to trap trace amounts of heavy metals from the electroplating wastewater, which were difficult to be entirely removed by the traditional hydroxide precipitation method. The results showed that Cr(III) and Ni(II) in the electroplating effluent decreased from 3.07 and 9.46 mg/l to 0.15 and 1.01 mg/l, respectively, and the treated solutions reached the effluent standard. Therefore, gamma-PGA is satisfactory as a well biosorbent for the removal of heavy metals. The adsorption mechanism of gamma-PGA binding heavy metals was also studied using HyperChem simulation and FT-IR.

Microorganism Precipitation in Enhancing Concrete Properties

Microorganism is an unique living element and has the ability to precipitate minerals through the process of biomineralisation. The precipitation process occured naturally and most of the precipitated products are very important compound composed of such as carbon, nitrogen, oxygen, sulphur, phosphorus and silica. So far, concrete incorporated with microorganism that able to precipitate calcium carbonate (calcite) was reported. However, little information on silica precipitation and its effect on concrete properties has been revealed. In this present study, the concrete specimens were incorporated with Bacillus subtilis silica adsorbed in their cell wall. Concrete specimens with five different concentration of Bacillus subtilis cell which are 104, 105, 106 and 107 cell/ml and control (without Bacillus subtilis) were cast. The experimental investigation aims to prove that the silica precipitated by this microorganism can enhance the concrete properties namely its compressive strength and resistance to carbonation. The microstructure of the concrete contained Bacillus subtilis was also examined. It appears that the inclusion of Bacillus subtilis into the concrete enhanced the compressive strength. The concentration of 106 cell/ml was found to be the optimum concentration to give most enhanced effect to the compressive strength. However the effect of including Bacillus subtilis to the resistance to carbonation of the concrete specimen is found to be insignificant.

Fungal biosorption--an alternative to meet the challenges of heavy metal pollution in aqueous solutions

The removal of heavy metal from the environment, especially wastewater, is now shifting from the use of conventional methods to the use of biosorption, which may be defined as the binding and concentration of selected heavy metal ions or other molecules on to certain biological material. Although most biosorption research concerns metal and related pollutants, including radionuclides, the term is now applied for particulates and all manner of organic pollutants as well. Such pollutants can be in gaseous, soluble and insoluble forms. Biosorption is a physical process carried out through mechanisms such as ion exchange, surface complexation and precipitation. It is a property of both living and dead organisms (and their components) and has been heralded as a promising biotechnology for pollutant removal from solution. Various biomasses such as plant products (tree bark, peanut skin, sawdust, plant weeds etc.) have been tested for metal biosorption with very encouraging results. In this comprehensive review, biosorptive ability of fungal biomass toward heavy metals is emphasized. A detailed description of adsorption properties and mode of action of fungal biosorbents is offered in order to explain the heavy metal selectivity displayed by these biosorbents. The cell structure and cell wall of the fungal cell is evaluated in terms of metal sequestration. The parameters influencing the passive uptake of pollutants are analysed. The binding mechanism is discussed, including the key functional groups involved in the process. Quantification of metal-biomass interactions is fundamental to evaluation of potential implementation strategies; hence sorption isotherms and sorption kinetics, as well as models used to characterize fungal biosorbent sorption, are reviewed. Despite the continuing dramatic increase in published research on biosorption, there has been little or no exploitation in an industrial context. Thus, the current status and future directions regarding biosorption at an industrial level are discussed. A systematic comparative review of the literature, based on the metal-binding capacity of fungal biomass under different conditions, is also provided. The problems associated with fungal biosorption are analysed and suitable remedies are discussed. Thus, this article reviews the achievements and current status of fungal biosorption technology and hopes to provide insights into future research.

Preparation of PEI-coated bacterial biosorbent in water solution: optimization of manufacturing conditions using response surface methodology

The aim of this study is to optimize preparation method of polyethyleneimine (PEI)-coated bacterial biosorbent in water as reaction media using fermentation waste biomass of Corynebacterium glutamicum as a raw material. The fermentation waste biomass of C. glutamicum and Reactive Red 4 were used as model raw bacterium and pollutant. Major factors affecting the performance of PEI-coated biosorbent were the amounts of polymer (PEI) and cross-linker glutaraldehyde (GA). These factors were optimized through response surface methodology (RSM) with two-level-two-factor (2(2)) full factorial central composite design. As a result, the optimum conditions were found to be 4.29 g of PEI and 0.15 mL of GA, with 10 g of the biomass, where the sorption capacity was enhanced 4.52-fold compared to that of the raw biomass. Therefore, this simple, cost-effective, and water-based method could be a useful modification tool for the development of a high performance biosorbent for removing anionic pollutants.