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For: Zhang YHP, Lynd LR. Regulation of cellulase synthesis in batch and continuous cultures of Clostridium thermocellum. J Bacteriol 2005;187:99-106. [PMID: 15601693 PMCID: PMC538832 DOI: 10.1128/jb.187.1.99-106.2005] [Citation(s) in RCA: 98] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2004] [Accepted: 09/19/2004] [Indexed: 11/20/2022]  Open
Number Cited by Other Article(s)
1
Tjo H, Jiang V, Joseph JA, Conway JM. Maltodextrin transport in the extremely thermophilic, lignocellulose degrading bacterium Anaerocellum bescii (f. Caldicellulosiruptor bescii). J Bacteriol 2025;207:e0040124. [PMID: 40304524 PMCID: PMC12096829 DOI: 10.1128/jb.00401-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2024] [Accepted: 03/24/2025] [Indexed: 05/02/2025]  Open
2
Abo-Zaid GA, Darwish MH, Ghozlan HA, Abdel-Gayed MA, Sabry SA. Sustainable management of peanut damping-off and root rot diseases caused by Rhizoctonia solani using environmentally friendly bio-formulations prepared from batch fermentation broth of chitinase-producing Streptomyces cellulosae. BMC PLANT BIOLOGY 2024;24:760. [PMID: 39118060 PMCID: PMC11312809 DOI: 10.1186/s12870-024-05441-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Accepted: 07/22/2024] [Indexed: 08/10/2024]
3
Tjo H, Conway JM. Sugar transport in thermophiles: Bridging lignocellulose deconstruction and bioconversion. J Ind Microbiol Biotechnol 2024;51:kuae020. [PMID: 38866721 PMCID: PMC11212667 DOI: 10.1093/jimb/kuae020] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2024] [Accepted: 06/11/2024] [Indexed: 06/14/2024]
4
Xiao Y, Dong S, Liu YJ, You C, Feng Y, Cui Q. Key roles of β-glucosidase BglA for the catabolism of both laminaribiose and cellobiose in the lignocellulolytic bacterium Clostridium thermocellum. Int J Biol Macromol 2023;250:126226. [PMID: 37558019 DOI: 10.1016/j.ijbiomac.2023.126226] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Revised: 07/31/2023] [Accepted: 08/06/2023] [Indexed: 08/11/2023]
5
Utilization of Monosaccharides by Hungateiclostridium thermocellum ATCC 27405 through Adaptive Evolution. Microorganisms 2021;9:microorganisms9071445. [PMID: 34361881 PMCID: PMC8303734 DOI: 10.3390/microorganisms9071445] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Revised: 06/30/2021] [Accepted: 07/02/2021] [Indexed: 12/13/2022]  Open
6
Xu C, Su X, Wang J, Zhang F, Shen G, Yuan Y, Yan L, Tang H, Song F, Wang W. Characteristics and functional bacteria in a microbial consortium for rice straw lignin-degrading. BIORESOURCE TECHNOLOGY 2021;331:125066. [PMID: 33812140 DOI: 10.1016/j.biortech.2021.125066] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2021] [Revised: 03/21/2021] [Accepted: 03/22/2021] [Indexed: 06/12/2023]
7
Ahamed F, Song HS, Ho YK. Modeling coordinated enzymatic control of saccharification and fermentation by Clostridium thermocellum during consolidated bioprocessing of cellulose. Biotechnol Bioeng 2021;118:1898-1912. [PMID: 33547803 DOI: 10.1002/bit.27705] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2020] [Revised: 02/03/2021] [Accepted: 02/04/2021] [Indexed: 11/09/2022]
8
Althuri A, Venkata Mohan S. Sequential and consolidated bioprocessing of biogenic municipal solid waste: A strategic pairing of thermophilic anaerobe and mesophilic microaerobe for ethanol production. BIORESOURCE TECHNOLOGY 2020;308:123260. [PMID: 32251860 DOI: 10.1016/j.biortech.2020.123260] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2020] [Revised: 03/23/2020] [Accepted: 03/24/2020] [Indexed: 06/11/2023]
9
Darwish AMG, Abdel-Azeem AM. Chaetomium Enzymes and Their Applications. Fungal Biol 2020. [DOI: 10.1007/978-3-030-31612-9_9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
10
Wang F, Wang M, Zhao Q, Niu K, Liu S, He D, Liu Y, Xu S, Fang X. Exploring the Relationship Between Clostridium thermocellum JN4 and Thermoanaerobacterium thermosaccharolyticum GD17. Front Microbiol 2019;10:2035. [PMID: 31551972 PMCID: PMC6746925 DOI: 10.3389/fmicb.2019.02035] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2019] [Accepted: 08/19/2019] [Indexed: 11/13/2022]  Open
11
Influence of substrate loadings on the consolidated bioprocessing of rice straw and sugarcane bagasse biomass using Ruminiclostridium thermocellum. ACTA ACUST UNITED AC 2019. [DOI: 10.1016/j.biteb.2019.01.010] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
12
A study on cellulase production from a mixture of lignocellulosic wastes. Process Biochem 2019. [DOI: 10.1016/j.procbio.2019.05.006] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
13
Tiwari S, Verma T. Cellulose as a Potential Feedstock for Cellulose Enzyme Production. Fungal Biol 2019. [DOI: 10.1007/978-3-030-14726-6_6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
14
Singh N, Mathur AS, Gupta RP, Barrow CJ, Tuli D, Puri M. Enhanced cellulosic ethanol production via consolidated bioprocessing by Clostridium thermocellum ATCC 31924☆. BIORESOURCE TECHNOLOGY 2018;250:860-867. [PMID: 30001594 DOI: 10.1016/j.biortech.2017.11.048] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2017] [Revised: 11/14/2017] [Accepted: 11/15/2017] [Indexed: 05/23/2023]
15
Choi J, Klingeman DM, Brown SD, Cox CD. The LacI family protein GlyR3 co-regulates the celC operon and manB in Clostridium thermocellum. BIOTECHNOLOGY FOR BIOFUELS 2017;10:163. [PMID: 28652864 PMCID: PMC5483248 DOI: 10.1186/s13068-017-0849-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/23/2017] [Accepted: 06/16/2017] [Indexed: 06/07/2023]
16
Chen H, Huang R, Zhang YHP. Systematic comparison of co-expression of multiple recombinant thermophilic enzymes in Escherichia coli BL21(DE3). Appl Microbiol Biotechnol 2017;101:4481-4493. [PMID: 28251267 DOI: 10.1007/s00253-017-8206-8] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2016] [Revised: 02/14/2017] [Accepted: 02/17/2017] [Indexed: 01/08/2023]
17
Zhou J, Shao X, Olson DG, Murphy SJL, Tian L, Lynd LR. Determining the roles of the three alcohol dehydrogenases (AdhA, AdhB and AdhE) in Thermoanaerobacter ethanolicus during ethanol formation. J Ind Microbiol Biotechnol 2017;44:745-757. [PMID: 28078513 DOI: 10.1007/s10295-016-1896-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2016] [Accepted: 12/22/2016] [Indexed: 12/25/2022]
18
Mason PM, Stuckey DC. Biofilms, bubbles and boundary layers - A new approach to understanding cellulolysis in anaerobic and ruminant digestion. WATER RESEARCH 2016;104:93-100. [PMID: 27518146 DOI: 10.1016/j.watres.2016.07.063] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2016] [Revised: 07/25/2016] [Accepted: 07/26/2016] [Indexed: 06/06/2023]
19
Lo J, Olson DG, Murphy SJL, Tian L, Hon S, Lanahan A, Guss AM, Lynd LR. Engineering electron metabolism to increase ethanol production in Clostridium thermocellum. Metab Eng 2016;39:71-79. [PMID: 27989806 DOI: 10.1016/j.ymben.2016.10.018] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2016] [Revised: 10/17/2016] [Accepted: 10/25/2016] [Indexed: 11/28/2022]
20
Thompson RA, Dahal S, Garcia S, Nookaew I, Trinh CT. Exploring complex cellular phenotypes and model-guided strain design with a novel genome-scale metabolic model of Clostridium thermocellum DSM 1313 implementing an adjustable cellulosome. BIOTECHNOLOGY FOR BIOFUELS 2016;9:194. [PMID: 27602057 PMCID: PMC5012057 DOI: 10.1186/s13068-016-0607-x] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2016] [Accepted: 08/26/2016] [Indexed: 05/06/2023]
21
Beri D, Olson DG, Holwerda EK, Lynd LR. Nicotinamide cofactor ratios in engineered strains of Clostridium thermocellum and Thermoanaerobacterium saccharolyticum. FEMS Microbiol Lett 2016;363:fnw091. [PMID: 27190292 DOI: 10.1093/femsle/fnw091] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/07/2016] [Indexed: 12/30/2022]  Open
22
Rojas-Rejón ÓA, Poggi-Varaldo HM, Ramos-Valdivia AC, Ponce-Noyola T, Cristiani-Urbina E, Martínez A, de la Torre M. Enzymatic saccharification of sugar cane bagasse by continuous xylanase and cellulase production from cellulomonas flavigena PR-22. Biotechnol Prog 2015;32:321-6. [PMID: 26701152 DOI: 10.1002/btpr.2213] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2015] [Revised: 12/03/2015] [Indexed: 11/08/2022]
23
Differences in biomass degradation between newly isolated environmental strains of Clostridium thermocellum and heterogeneity in the size of the cellulosomal scaffoldin. Syst Appl Microbiol 2015;38:424-32. [DOI: 10.1016/j.syapm.2015.06.005] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2015] [Revised: 06/05/2015] [Accepted: 06/05/2015] [Indexed: 11/21/2022]
24
Sand A, Holwerda EK, Ruppertsberger NM, Maloney M, Olson DG, Nataf Y, Borovok I, Sonenshein AL, Bayer EA, Lamed R, Lynd LR, Shoham Y. Three cellulosomal xylanase genes inClostridium thermocellumare regulated by both vegetative SigA (σA) and alternative SigI6 (σI6) factors. FEBS Lett 2015;589:3133-40. [DOI: 10.1016/j.febslet.2015.08.026] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2015] [Revised: 08/10/2015] [Accepted: 08/14/2015] [Indexed: 11/29/2022]
25
Development of a regulatable plasmid-based gene expression system for Clostridium thermocellum. Appl Microbiol Biotechnol 2015;99:7589-99. [DOI: 10.1007/s00253-015-6610-5] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2014] [Revised: 04/07/2015] [Accepted: 04/15/2015] [Indexed: 01/31/2023]
26
Bruder M, Moo-Young M, Chung DA, Chou CP. Elimination of carbon catabolite repression in Clostridium acetobutylicum—a journey toward simultaneous use of xylose and glucose. Appl Microbiol Biotechnol 2015;99:7579-88. [DOI: 10.1007/s00253-015-6611-4] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2015] [Revised: 04/09/2015] [Accepted: 04/12/2015] [Indexed: 10/23/2022]
27
Coculture of Staphylococcus aureus with Pseudomonas aeruginosa Drives S. aureus towards Fermentative Metabolism and Reduced Viability in a Cystic Fibrosis Model. J Bacteriol 2015;197:2252-64. [PMID: 25917910 DOI: 10.1128/jb.00059-15] [Citation(s) in RCA: 248] [Impact Index Per Article: 24.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2015] [Accepted: 04/23/2015] [Indexed: 01/22/2023]  Open
28
Zhou J, Olson DG, Lanahan AA, Tian L, Murphy SJL, Lo J, Lynd LR. Physiological roles of pyruvate ferredoxin oxidoreductase and pyruvate formate-lyase in Thermoanaerobacterium saccharolyticum JW/SL-YS485. BIOTECHNOLOGY FOR BIOFUELS 2015;8:138. [PMID: 26379770 PMCID: PMC4570089 DOI: 10.1186/s13068-015-0304-1] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2015] [Accepted: 08/03/2015] [Indexed: 05/04/2023]
29
Wen Z, Wu M, Lin Y, Yang L, Lin J, Cen P. A novel strategy for sequential co-culture of Clostridium thermocellum and Clostridium beijerinckii to produce solvents from alkali extracted corn cobs. Process Biochem 2014. [DOI: 10.1016/j.procbio.2014.07.009] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
30
Yaniv O, Fichman G, Borovok I, Shoham Y, Bayer EA, Lamed R, Shimon LJW, Frolow F. Fine-structural variance of family 3 carbohydrate-binding modules as extracellular biomass-sensing components of Clostridium thermocellum anti-σI factors. ACTA ACUST UNITED AC 2014;70:522-34. [PMID: 24531486 DOI: 10.1107/s139900471302926x] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2013] [Accepted: 10/23/2013] [Indexed: 11/11/2022]
31
Role of transcription and enzyme activities in redistribution of carbon and electron flux in response to N2 and H2 sparging of open-batch cultures of Clostridium thermocellum ATCC 27405. Appl Microbiol Biotechnol 2014;98:2829-40. [DOI: 10.1007/s00253-013-5500-y] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2013] [Revised: 12/18/2013] [Accepted: 12/24/2013] [Indexed: 12/17/2022]
32
St Brice LA, Shao X, Izquierdo JA, Lynd LR. OPTIMIZATION OF AFFINITY DIGESTION FOR THE ISOLATION OF CELLULOSOMES FROMClostridium thermocellum. Prep Biochem Biotechnol 2013;44:206-16. [DOI: 10.1080/10826068.2013.829494] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
33
Linville JL, Rodriguez M, Land M, Syed MH, Engle NL, Tschaplinski TJ, Mielenz JR, Cox CD. Industrial robustness: understanding the mechanism of tolerance for the Populus hydrolysate-tolerant mutant strain of Clostridium thermocellum. PLoS One 2013;8:e78829. [PMID: 24205326 PMCID: PMC3804516 DOI: 10.1371/journal.pone.0078829] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2013] [Accepted: 09/16/2013] [Indexed: 01/01/2023]  Open
34
Wilson CM, Yang S, Rodriguez M, Ma Q, Johnson CM, Dice L, Xu Y, Brown SD. Clostridium thermocellum transcriptomic profiles after exposure to furfural or heat stress. BIOTECHNOLOGY FOR BIOFUELS 2013;6:131. [PMID: 24028713 PMCID: PMC3848806 DOI: 10.1186/1754-6834-6-131] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2012] [Accepted: 09/04/2013] [Indexed: 05/23/2023]
35
Xu C, Huang R, Teng L, Wang D, Hemme CL, Borovok I, He Q, Lamed R, Bayer EA, Zhou J, Xu J. Structure and regulation of the cellulose degradome in Clostridium cellulolyticum. BIOTECHNOLOGY FOR BIOFUELS 2013;6:73. [PMID: 23657055 PMCID: PMC3656788 DOI: 10.1186/1754-6834-6-73] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2013] [Accepted: 05/01/2013] [Indexed: 05/20/2023]
36
van der Veen D, Lo J, Brown SD, Johnson CM, Tschaplinski TJ, Martin M, Engle NL, van den Berg RA, Argyros AD, Caiazza NC, Guss AM, Lynd LR. Characterization of Clostridium thermocellum strains with disrupted fermentation end-product pathways. J Ind Microbiol Biotechnol 2013;40:725-34. [PMID: 23645383 DOI: 10.1007/s10295-013-1275-5] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2012] [Accepted: 04/15/2013] [Indexed: 10/26/2022]
37
Atypical glycolysis in Clostridium thermocellum. Appl Environ Microbiol 2013;79:3000-8. [PMID: 23435896 DOI: 10.1128/aem.04037-12] [Citation(s) in RCA: 80] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]  Open
38
Phylogenetic distribution of potential cellulases in bacteria. Appl Environ Microbiol 2012;79:1545-54. [PMID: 23263967 DOI: 10.1128/aem.03305-12] [Citation(s) in RCA: 184] [Impact Index Per Article: 14.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]  Open
39
Carere CR, Rydzak T, Verbeke TJ, Cicek N, Levin DB, Sparling R. Linking genome content to biofuel production yields: a meta-analysis of major catabolic pathways among select H2 and ethanol-producing bacteria. BMC Microbiol 2012;12:295. [PMID: 23249097 PMCID: PMC3561251 DOI: 10.1186/1471-2180-12-295] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2012] [Accepted: 12/12/2012] [Indexed: 12/16/2022]  Open
40
Anaerobic high-throughput cultivation method for isolation of thermophiles using biomass-derived substrates. Methods Mol Biol 2012;908:153-68. [PMID: 22843398 DOI: 10.1007/978-1-61779-956-3_15] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]
41
Role of the CipA scaffoldin protein in cellulose solubilization, as determined by targeted gene deletion and complementation in Clostridium thermocellum. J Bacteriol 2012. [PMID: 23204466 DOI: 10.1128/jb.02014-12] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
42
Burton E, Martin VJJ. Proteomic analysis of Clostridium thermocellum ATCC 27405 reveals the upregulation of an alternative transhydrogenase-malate pathway and nitrogen assimilation in cells grown on cellulose. Can J Microbiol 2012;58:1378-88. [PMID: 23210995 DOI: 10.1139/cjm-2012-0412] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
43
Rydzak T, McQueen PD, Krokhin OV, Spicer V, Ezzati P, Dwivedi RC, Shamshurin D, Levin DB, Wilkins JA, Sparling R. Proteomic analysis of Clostridium thermocellum core metabolism: relative protein expression profiles and growth phase-dependent changes in protein expression. BMC Microbiol 2012;12:214. [PMID: 22994686 PMCID: PMC3492117 DOI: 10.1186/1471-2180-12-214] [Citation(s) in RCA: 85] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2012] [Accepted: 09/11/2012] [Indexed: 01/21/2023]  Open
44
Tschaplinski TJ, Standaert RF, Engle NL, Martin MZ, Sangha AK, Parks JM, Smith JC, Samuel R, Jiang N, Pu Y, Ragauskas AJ, Hamilton CY, Fu C, Wang ZY, Davison BH, Dixon RA, Mielenz JR. Down-regulation of the caffeic acid O-methyltransferase gene in switchgrass reveals a novel monolignol analog. BIOTECHNOLOGY FOR BIOFUELS 2012;5:71. [PMID: 22998926 PMCID: PMC3524654 DOI: 10.1186/1754-6834-5-71] [Citation(s) in RCA: 67] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2012] [Accepted: 09/05/2012] [Indexed: 05/02/2023]
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Yang S, Giannone RJ, Dice L, Yang ZK, Engle NL, Tschaplinski TJ, Hettich RL, Brown SD. Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress. BMC Genomics 2012;13:336. [PMID: 22823947 PMCID: PMC3478167 DOI: 10.1186/1471-2164-13-336] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2011] [Accepted: 07/01/2012] [Indexed: 01/12/2023]  Open
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Assessment of the biomass hydrolysis potential in bacterial isolates from a volcanic environment: biosynthesis of the corresponding activities. World J Microbiol Biotechnol 2012;28:2889-902. [DOI: 10.1007/s11274-012-1100-8] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2012] [Accepted: 06/05/2012] [Indexed: 11/25/2022]
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Holwerda EK, Hirst KD, Lynd LR. A defined growth medium with very low background carbon for culturing Clostridium thermocellum. ACTA ACUST UNITED AC 2012;39:943-7. [DOI: 10.1007/s10295-012-1091-3] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2011] [Accepted: 01/14/2012] [Indexed: 11/29/2022]
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Tracy BP, Jones SW, Fast AG, Indurthi DC, Papoutsakis ET. Clostridia: the importance of their exceptional substrate and metabolite diversity for biofuel and biorefinery applications. Curr Opin Biotechnol 2012;23:364-81. [DOI: 10.1016/j.copbio.2011.10.008] [Citation(s) in RCA: 263] [Impact Index Per Article: 20.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2011] [Revised: 10/06/2011] [Accepted: 10/20/2011] [Indexed: 12/19/2022]
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Bianchetti CM, Elsen NL, Fox BG, Phillips GN. Structure of cellobiose phosphorylase from Clostridium thermocellum in complex with phosphate. Acta Crystallogr Sect F Struct Biol Cryst Commun 2011;67:1345-9. [PMID: 22102229 PMCID: PMC3212448 DOI: 10.1107/s1744309111032660] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2011] [Accepted: 08/11/2011] [Indexed: 11/10/2022]
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Wang ZW, Lee SH, Elkins JG, Morrell-Falvey JL. fSpatial and temporal dynamics of cellulose degradation and biofilm formation by Caldicellulosiruptor obsidiansis and Clostridium thermocellum. AMB Express 2011;1:30. [PMID: 21982458 PMCID: PMC3222322 DOI: 10.1186/2191-0855-1-30] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2011] [Accepted: 10/07/2011] [Indexed: 11/23/2022]  Open
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