Molecular phylogeny of bark and ambrosia beetles reveals multiple origins of fungus farming during periods of global warming

Mitochondrial genome provides species-specific targets for the rapid detection of early invasive populations of Hylurgus ligniperda in China

BACKGROUND

Hylurgus ligniperda, a major international forestry quarantine pest, was recently found to have invaded and posed a serious threat to the Pinus forests of the Jiaodong Peninsula in China. Continuous monitoring and vigilance of the early population is imperative, and rapid molecular detection technology is urgently needed. We focused on developing a single-gene-based species-specific PCR (SS-PCR) method.

RESULTS

We sequenced and assembled the mitochondrial genome of H. ligniperda to identify suitable target genes. We identified three closely related species for detecting the specificity of SS-PCR through phylogenetic analysis based on 13 protein-coding genes (PCGs). Subsequently, we analyzed the evolution of 13 PCGs and selected four mitochondrial genes to represent slow-evolving gene (COI) and faster-evolving genes (e.g. ND2, ND4, and ND5), respectively. We developed four species-specific primers targeting COI, ND2, ND4, and ND5 to rapidly identify H. ligniperda. The results showed that the four species-specific primers exhibited excellent specificity and sensitivity in the PCR assays, with consistent performance across a broader range of species. This method demonstrates the ability to identify beetles promptly, even during their larval stage. The entire detection process can be completed within 2-3 h.

CONCLUSIONS

This method is suitable for large-scale species detection in laboratory settings. Moreover, the selection of target genes in the SS-PCR method is not affected by the evolutionary rate. SS-PCR can be widely implemented at port and forestry workstations, significantly enhancing early management strategies and quarantine measures against H. ligniperda. This approach will help prevent the spread of the pest and effectively preserve the resources of Chinese pine forests.

Two sympatric lineages of Australian Cnestus solidus share Ambrosiella symbionts but not Wolbachia

Sympatric lineages of inbreeding species provide an excellent opportunity to investigate species divergence patterns and processes. Many ambrosia beetle lineages (Curculionidae: Scolytinae) reproduce by predominant inbreeding through sib mating in nests excavated in woody plant parts wherein they cultivate symbiotic ambrosia fungi as their sole source of nutrition. The Xyleborini ambrosia beetle species Cnestus solidus and Cnestus pseudosolidus are sympatrically distributed across eastern Australia and have overlapping morphological variation. Using multilocus sequencing analysis of individuals collected from 19 sites spanning their sympatric distribution, we assessed their phylogenetic relationships, taxonomic status and microbial symbionts. We found no genetic differentiation between individuals morphologically identified as C. solidus and C. pseudosolidus confirming previous suggestions that C. pseudosolidus is synonymous to C. solidus. However, within C. solidus we unexpectedly discovered the sympatric coexistence of two morphologically indistinguishable but genetically distinct lineages with small nuclear yet large mitochondrial divergence. At all sites except one, individuals of both lineages carried the same primary fungal symbiont, a new Ambrosiella species, indicating that fungal symbiont differentiation may not be involved in lineage divergence. One strain of the maternally inherited bacterial endosymbiont Wolbachia was found at high prevalence in individuals of the more common lineage but not in the other, suggesting that it may influence host fitness. Our data suggest that the two Australian Cnestus lineages diverged allopatrically, and one lineage then acquired Wolbachia. Predominant inbreeding and Wolbachia infection may have reinforced reproductive barriers between these two lineages after their secondary contact contributing to their current sympatric distribution.

The tribal placement of Urocorthylus Petrov, Mandelshtam & Beaver, with a description of the male of U. hirtellus Petrov et al., and notes on its biology (Coleoptera: Curculionidae: Scolytinae)

We show, using molecular data, that the enigmatic genus Urocorthylus Petrov, Mandelshtam & Beaver from Southeast Asia belongs in the scolytine tribe, Dryocoetini, and not in the almost wholly American tribe Corthylini, where it was originally placed. The male of Urocorthylus hirtellus Petrov, Mandelshtam & Beaver is described and figured for the first time, and new records from China are presented. Urocorthylus hirtellus is a bark beetle, and not an ambrosia beetle as originally hypothesised. Keys are provided to the genus within the Dryocoetini, and to the two species included in the genus.

Complete Mitochondrial Genome of Scolytoplatypodini Species (Coleoptera: Curculionidae: Scolytinae) and Phylogenetic Implications

The complete mitochondrial genomes (mitogenomes) of beetles in the tribe Scolytoplatypodini (genus Scolytoplatypus) were sequenced and annotated. These included Scolytoplatypus raja (15,324 bp), Scolytoplatypus sinensis (15,394 bp), Scolytoplatypus skyliuae (15,167 bp), and Scolytoplatypus wugongshanensis (15,267 bp). The four mitogenomes contained 37 typical genes, including 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), and 2 ribosomal RNA genes (rRNAs). The gene orientation and arrangement of the four mitogenomes were similar to other Coleoptera mitogenomes. PCGs mostly started with ATN and terminated with TAA. The Ka/Ks ratio of 13 PCGs in the four species revealed that cox1 had the slowest evolutionary rate and atp8 and nad6 had a higher evolutionary rate. All tRNAs had typical cloverleaf secondary structures, but trnS1 lacked dihydrouridine arm. Partial tRNAs lost the discriminator nucleotide. The trnY did not possess the discriminator nucleotide and also lost three bases, showing a special amino-acyl arm. Bayesian inference (BI) and maximum likelihood (ML) methods were conducted for phylogenetic analyses using 13 PCGs. Scolytoplatypodini was clustered with Hylurgini and Hylastini, and the monophyly of Scolytoplatypodini was supported. The four newly sequenced mitogenomes increase understanding of the evolutionary relationships of Scolytoplatypodini and other Scolytinae species.

Metabarcoding of mycetangia from the Dendroctonus frontalis species complex (Curculionidae: Scolytinae) reveals diverse and functionally redundant fungal assemblages

Dendroctonus-bark beetles are associated with microbes that can detoxify terpenes, degrade complex molecules, supplement and recycle nutrients, fix nitrogen, produce semiochemicals, and regulate ecological interactions between microbes. Females of some Dendroctonus species harbor microbes in specialized organs called mycetangia; yet little is known about the microbial diversity contained in these structures. Here, we use metabarcoding to characterize mycetangial fungi from beetle species in the Dendroctonus frontalis complex, and analyze variation in biodiversity of microbial assemblages between beetle species. Overall fungal diversity was represented by 4 phyla, 13 classes, 25 orders, 39 families, and 48 genera, including 33 filamentous fungi, and 15 yeasts. The most abundant genera were Entomocorticium, Candida, Ophiostoma-Sporothrix, Ogataea, Nakazawaea, Yamadazyma, Ceratocystiopsis, Grosmannia-Leptographium, Absidia, and Cyberlindnera. Analysis of α-diversity indicated that fungal assemblages of D. vitei showed the highest richness and diversity, whereas those associated with D. brevicomis and D. barberi had the lowest richness and diversity, respectively. Analysis of β-diversity showed clear differentiation in the assemblages associated with D. adjunctus, D. barberi, and D. brevicomis, but not between closely related species, including D. frontalis and D. mesoamericanus and D. mexicanus and D. vitei. A core mycobiome was not statistically identified; however, the genus Ceratocystiopsis was shared among seven beetle species. Interpretation of a tanglegram suggests evolutionary congruence between fungal assemblages and species of the D. frontalis complex. The presence of different amplicon sequence variants (ASVs) of the same genus in assemblages from species of the D. frontalis complex outlines the complexity of molecular networks, with the most complex assemblages identified from D. vitei, D. mesoamericanus, D. adjunctus, and D. frontalis. Analysis of functional variation of fungal assemblages indicated multiple trophic groupings, symbiotroph/saprotroph guilds represented with the highest frequency (∼31% of identified genera). These findings improve our knowledge about the diversity of mycetangial communities in species of the D. frontalis complex and suggest that minimal apparently specific assemblages are maintained and regulated within mycetangia.

Potential European Geographical Distribution of Gnathotrichus materiarius (Fitch, 1858) (Coleoptera: Scolytinae) under Current and Future Climate Conditions

Gnathotrichus materiarius (Fitch, 1858) is an alien ambrosia beetle from North America, that has been spreading across Europe since the 1930s. The species infests coniferous trees, excavating galleries in sapwood. However, to date very few studies have predicted changes in ambrosia beetle habitat suitability under changing climate conditions. To fill that gap in the current knowledge, we used the MaxEnt algorithm to estimate areas potentially suitable for this species in Europe, both under current climate conditions and those forecasted for the years 2050 and 2070. Our analyses showed areas where the species has not been reported, though the climatic conditions are suitable. Models for the forecasted conditions predicted an increase in suitable habitats. Due to the wide range of host trees, the species is likely to spread through the Balkans, the Black Sea and Caucasus region, Baltic countries, the Scandinavian Peninsula, and Ukraine. As a technical pest of coniferous sapwood, it can cause financial losses due to deterioration in quality of timber harvested in such regions. Our results will be helpful for the development of a climate-change-integrated management strategy to mitigate potential adverse effects.

Lessons From Insect Fungiculture: From Microbial Ecology to Plastics Degradation

Anthropogenic activities have extensively transformed the biosphere by extracting and disposing of resources, crossing boundaries of planetary threat while causing a global crisis of waste overload. Despite fundamental differences regarding structure and recalcitrance, lignocellulose and plastic polymers share physical-chemical properties to some extent, that include carbon skeletons with similar chemical bonds, hydrophobic properties, amorphous and crystalline regions. Microbial strategies for metabolizing recalcitrant polymers have been selected and optimized through evolution, thus understanding natural processes for lignocellulose modification could aid the challenge of dealing with the recalcitrant human-made polymers spread worldwide. We propose to look for inspiration in the charismatic fungal-growing insects to understand multipartite degradation of plant polymers. Independently evolved in diverse insect lineages, fungiculture embraces passive or active fungal cultivation for food, protection, and structural purposes. We consider there is much to learn from these symbioses, in special from the community-level degradation of recalcitrant biomass and defensive metabolites. Microbial plant-degrading systems at the core of insect fungicultures could be promising candidates for degrading synthetic plastics. Here, we first compare the degradation of lignocellulose and plastic polymers, with emphasis in the overlapping microbial players and enzymatic activities between these processes. Second, we review the literature on diverse insect fungiculture systems, focusing on features that, while supporting insects' ecology and evolution, could also be applied in biotechnological processes. Third, taking lessons from these microbial communities, we suggest multidisciplinary strategies to identify microbial degraders, degrading enzymes and pathways, as well as microbial interactions and interdependencies. Spanning from multiomics to spectroscopy, microscopy, stable isotopes probing, enrichment microcosmos, and synthetic communities, these strategies would allow for a systemic understanding of the fungiculture ecology, driving to application possibilities. Detailing how the metabolic landscape is entangled to achieve ecological success could inspire sustainable efforts for mitigating the current environmental crisis.

Ecuadorian Coptoborus beetles harbor Fusarium and Graphium fungi previously associated with Euwallacea ambrosia beetles

Ambrosia beetles from the scolytine tribe Xyleborini (Curculionidae) are important to the decomposition of woody plant material on every continent except Antarctica. These insects farm fungi on the walls of tunnels they build inside recently dead trees and rely on the fungi for nutrition during all stages of their lives. Such ambrosia fungi rely on the beetles to provide appropriate substrates and environmental conditions for growth. A small minority of xyleborine ambrosia beetle-fungal partnerships cause significant damage to healthy trees. The xyleborine beetle Coptoborus ochromactonus vectors a Fusarium (Hypocreales) fungus that is lethal to balsa (Ochroma pyramidale (Malvaceae)) trees in Ecuador. Although this pathogenic fungus and its associated beetle are not known to be established in the United States, several other non-native ambrosia beetle species are vectors of destructive plant diseases in this country. This fact and the acceleration of trade between South America and the United States demonstrate the importance of understanding fungal plant pathogens before they escape their native ranges. Here we identify the fungi accompanying Coptoborus ambrosia beetles collected in Ecuador. Classification based ribosomal internal transcribed spacer 1 (ITS) sequences revealed the most prevalent fungi associated with Coptoborus are Fusarium sp. and Graphium sp. (Microascales: Microascaceae), which have been confirmed as ambrosia fungi for xyleborine ambrosia beetles, and Clonostsachys sp. (Hypocreales), which is a diverse genus found abundantly in soils and associated with plants. Phylogenetic analyses of the Fusarium strains based on ITS, translation elongation factor (EF1-α), and two subunits of the DNA-directed RNA polymerase II (RPB1 and RPB2) identified them as Fusarium sp. AF-9 in the Ambrosia Fusarium Clade (AFC). This Fusarium species was previously associated with a few xyleborine ambrosia beetles, most notably the species complex Euwallacea fornicatus (Eichhoff 1868) (Curculionidae: Scolytinae: Xyleborini). Examination of ITS and EF1-α sequences showed a close affinity between the Graphium isolated from Coptoborus spp. and other xyleborine-associated Graphium as well as the soil fungus Graphium basitruncatum. This characterization of ambrosia fungi through DNA sequencing confirms the identity of a putative plant pathogen spread by Coptoborus beetles and expands the documented range of Fusarium and Graphium ambrosia fungi.

Lifestyle Transitions in Fusarioid Fungi are Frequent and Lack Clear Genomic Signatures

The fungal genus Fusarium (Ascomycota) includes well-known plant pathogens that are implicated in diseases worldwide, and many of which have been genome sequenced. The genus also encompasses other diverse lifestyles, including species found ubiquitously as asymptomatic-plant inhabitants (endophytes). Here, we produced structurally annotated genome assemblies for five endophytic Fusarium strains, including the first whole-genome data for Fusarium chuoi. Phylogenomic reconstruction of Fusarium and closely related genera revealed multiple and frequent lifestyle transitions, the major exception being a monophyletic clade of mutualist insect symbionts. Differential codon usage bias and increased codon optimisation separated Fusarium sensu stricto from allied genera. We performed computational prediction of candidate secreted effector proteins (CSEPs) and carbohydrate-active enzymes (CAZymes)—both likely to be involved in the host–fungal interaction—and sought evidence that their frequencies could predict lifestyle. However, phylogenetic distance described gene variance better than lifestyle did. There was no significant difference in CSEP, CAZyme, or gene repertoires between phytopathogenic and endophytic strains, although we did find some evidence that gene copy number variation may be contributing to pathogenicity. Large numbers of accessory CSEPs (i.e., present in more than one taxon but not all) and a comparatively low number of strain-specific CSEPs suggested there is a limited specialisation among plant associated Fusarium species. We also found half of the core genes to be under positive selection and identified specific CSEPs and CAZymes predicted to be positively selected on certain lineages. Our results depict fusarioid fungi as prolific generalists and highlight the difficulty in predicting pathogenic potential in the group.

Three novel Ambrosia Fusarium Clade species producing multiseptate "dolphin-shaped" conidia, and an augmented description of Fusarium kuroshium

The Ambrosia Fusarium Clade (AFC) is a monophyletic lineage within clade 3 of the Fusarium solani species complex (FSSC) that currently comprises 19 genealogically exclusive species. These fungi are known or predicted to be farmed by adult female Euwallacea ambrosia beetles as a nutritional mutualism (Coleoptera: Scolytinae; Xyleborini). To date, only eight of the 19 AFC species have been described formally with Latin binomials. We describe three AFC species, previously known as AF-8, AF-10, and AF-11, based on molecular phylogenetic analysis of multilocus DNA sequence data and comparative morphological/phenotypic studies. Fusarium duplospermum (AF-8) farmed by E. perbrevis on avocado in Florida, USA, is distinguished by forming two morphologically different types of multiseptate conidia and brownish orange colonies on potato dextrose agar (PDA). Fusarium drepaniforme (AF-10), isolated from an unknown woody host in Singapore and deposited as Herb IMI 351954 in the Royal Botanic Gardens, Kew, UK, under the name F. bugnicourtii, is diagnosed by frequent production of multiseptate sickle-shaped conidia. Fusarium papillatum (AF-11), isolated from mycangia of E. perbrevis infesting tea in Kandy, Sri Lanka, forms multiseptate clavate conidia that possess a papillate apical cell protruding toward the ventral side. Lastly, we prepared an augmented description of F. kuroshium (AF-12), previously isolated from the heads or galleries of E. kuroshio in a California sycamore tree, El Cajon, California, USA, and recently validated nomenclaturally as Fusarium. Conidia formed by F. kuroshium vary widely in size and shape, suggesting a close morphological relationship with F. floridanum, compared with all other AFC species. Maximum likelihood and maximum parsimony analyses of a multilocus data set resolve these three novel AFC species, and F. kuroshium, as phylogenetically distinct based on genealogical concordance. Given the promiscuous nature of several Euwallacea species, and the overlapping geographic range of several AFC species and Euwallacea ambrosia beetles, the potential for symbiont switching among sympatric species is discussed.

Origin and evolution of fungus farming in wood-boring Coleoptera - a palaeontological perspective

Insect-fungus mutualism is one of the better-studied symbiotic interactions in nature. Ambrosia fungi are an ecological assemblage of unrelated fungi that are cultivated by ambrosia beetles in their galleries as obligate food for larvae. Despite recently increased research interest, it remains unclear which ecological factors facilitated the origin of fungus farming, and how it transformed into a symbiotic relationship with obligate dependency. It is clear from phylogenetic analyses that this symbiosis evolved independently many times in several beetle and fungus lineages. However, there is a mismatch between palaeontological and phylogenetic data. Herein we review, for the first time, the ambrosia system from a palaeontological perspective. Although largely ignored, families such as Lymexylidae and Bostrichidae should be included in the list of ambrosia beetles because some of their species cultivate ambrosia fungi. The estimated origin for some groups of ambrosia fungi during the Cretaceous concurs with a known high diversity of Lymexylidae and Bostrichidae at that time. Although potentially older, the greatest radiation of various ambrosia beetle lineages occurred in the weevil subfamilies Scolytinae and Platypodinae during the Eocene. In this review we explore the evolutionary relationship between ambrosia beetles, fungi and their host trees, which is likely to have persisted for longer than previously supposed.

A revision of the Neotropical genus Coptoborus Hopkins (Coleoptera, Curculionidae, Scolytinae, Xyleborini)

The Neotropical xyleborine ambrosia beetle genus Coptoborus Hopkins is reviewed. The following 40 Coptoborus species are described: C. amplissimus sp. nov. (Peru), C. asperatus sp. nov. (Ecuador), C. barbicauda sp. nov. (French Guiana), C. bettysmithae sp. nov. (Ecuador), C. brevicauda sp. nov. (Ecuador), C. brigman sp. nov. (Ecuador), C. busoror sp. nov. (Ecuador), C. capillisoror sp. nov. (Brazil), C. chica sp. nov. (Suriname), C. crassisororcula sp. nov. (Peru), C. doliolum sp. nov. (Ecuador), C. erwini sp. nov. (Ecuador), C. furiosa sp. nov. (Ecuador), C. galacatosae sp. nov. (Ecuador), C. hansen sp. nov. (Brazil), C. incomptus sp. nov. (Peru), C. janeway sp. nov. (Peru), C. katniss sp. nov. (Ecuador), C. leeloo sp. nov. (Ecuador), C. leia sp. nov. (Ecuador, Suriname), C. leporinus sp. nov. (Peru), C. martinezae sp. nov. (Ecuador), C. murinus sp. nov. (Ecuador), C. newt sp. nov. (Peru), C. osbornae sp. nov. (Ecuador), C. panosus sp. nov. (French Guiana), C. papillicauda sp. nov. (Suriname), C. pilisoror sp. nov. (Ecuador), C. ripley sp. nov. (Ecuador), C. sagitticauda sp. nov. (Guyana), C. sarahconnor sp. nov. (Brazil), C. scully sp. nov. (Ecuador), C. sicula sp. nov. (Ecuador), C. sororcula sp. nov. (Peru), C. starbuck sp. nov. (Ecuador), C. trinity sp. nov. (Brazil), C. uhura sp. nov. (Peru), C. vasquez sp. nov. (Panama), C. vrataski sp. nov. (Brazil), and C. yar sp. nov. (Ecuador). Seventeen new combinations are given: Coptoborus amazonicus (Petrov, 2020) comb. nov., C. atlanticus (Bright & Torres, 2006) comb. nov., C. bellus Bright & Torres, 2006 comb. nov., C. coartatus (Sampson, 1921) comb. nov., C. crinitulus (Wood, 1974) comb. nov., C. exilis (Schedl, 1934) comb. nov., C. incultus (Wood, 1975) comb. nov., C. magnus (Petrov, 2020) comb. nov., C. micarius (Wood, 1974) comb. nov., C. obtusicornis (Schedl, 1976) comb. nov., C. paurus (Wood, 2007) comb. nov., C. pristis (Wood, 1974) comb. nov., C. pseudotenuis (Schedl, 1936) comb. nov., C. puertoricensis (Bright & Torres, 2006) comb. nov., C. ricini (Eggers, 1932) comb. nov., C. semicostatus (Schedl, 1948) comb. nov., C. tristiculus (Wood, 1975) comb. nov., and C. villosulus (Blandford, 1898) comb. nov. Two new synonyms are proposed: Coptoborus Hopkins, 1915 (= Theoborus Hopkins, 1915 syn. nov.) and Coptoborus villosulus (Blandford, 1898) (= Theoborus theobromae Hopkins, 1915 syn. nov.). Xyleborus neosphenos Schedl, 1976 comb. res. is removed from Coptoborus. The revised genus now contains 77 species and a key to their identification is provided.

A phylogenetic and taxonomic assessment of Afrotropical Micracidini (Coleoptera, Scolytinae) reveals a strong diversifying role for Madagascar

Afrotropical bark beetle genera in the tribe Micracidini are revised and an identification key provided. The new classification is based on phylogenetic analyses of five molecular markers (COI, EF-1α, 28S, PABP1, CAD) in combination with morphological characters. Five new genera are erected and one genus synonymized, resulting in a total of 11 valid genera: Lanurgus Eggers, 1920, Traglostus Schedl, 1938, Pseudomicracis Eggers, 1920 (=Saurotocis Wood, 1984 syn. nov.), Phloeocurus Wood, 1984, Afromicracis Schedl, 1959, Dendrochilus Schedl, 1959, Neomicracis Jordal gen. nov., Leiomicracis Jordal gen. nov., Diplotrichus Jordal gen. nov., Pseudolanurgus Jordal gen. nov., Microlanurgus Jordal gen. nov. The following new species are described to be included in the new genera: Leiomicracis aurea Jordal sp. nov., Neomicracis squamigera Jordal sp. nov., both from Tanzania, and Microlanurgus bicolor Jordal sp. nov. and Microlanurgus ater Jordal sp. nov., from Madagascar. The following new synonyms and new combinations are proposed: Afromicracis dubius (Schedl, 1950) (=Afromicracis angolensis Schedl, 1962 syn. nov.), Afromicacis elongatulus (Schedl, 1977) comb. nov.,Afromicracis jasminiae (Schedl 1957) comb. nov. (=Dendrochilus mikaniae Schedl 1957 syn. nov.), Afromicracis robustus (Schedl 1957) comb. nov. (=Dendrochilus arundinarius Schedl 1957 syn. nov., =Hypothenemus bambusae Browne, 1970 syn. nov., =Dendrochilus filum Schedl, 1977 syn. nov.) (all from Dendrochilus), Afromicracis setifer (Schedl 1957) comb. nov. (Mimiocurus), Lanurgus longipilis (Schedl, 1958) comb. nov., Lanurgus pubescens (Schedl, 1961) comb. nov. (both from Traglostus), Diplotrichus catenatus (Schedl, 1953) comb. nov.,Diplotrichus elongatus (Schedl, 1950) comb. nov.,Diplotrichus euphorbia (Schedl, 1961) comb. nov.,Diplotrichus gracilis (Schedl, 1958) comb. nov.,Diplotrichus minor (Schedl, 1950) comb. nov (=Lanurgus frontalis Schedl, 1953 syn. Nov.), Diplotrichus obesus (Schedl, 1953) comb. nov., Diplotrichus pygmaeus (Schedl, 1965) comb. nov., Diplotrichus rugosipes (Schedl, 1961) comb. nov., Diplotrichus subdepressus (Schedl, 1965) comb. nov., Diplotrichus widdringtoniae (Schedl, 1962) comb. nov. (all from Lanurgus), Diplotrichus ignotus (Schedl, 1965) comb. nov. (Pseudomicracis), Pseudolanurgus harunganae (Schedl, 1961) comb. nov. (=Lanurgus cribrellus Schedl, 1965 syn. nov.), Pseudolanurgus bugekeae (Schedl, 1957) comb. nov. (both from Pseudomicracis), Pseudolanurgus minutissimus (Schedl, 1961) comb. nov. (Lanurgus), Pseudomicracis dispar (Schedl, 1961) comb. nov., Pseudomicracis tomicoides (Schedl, 1961) comb. nov. (both from Saurotocis). The following taxa were transferred to genera in other tribes: Acanthotomicus intermedius (Schedl, 1977) comb. nov., Xylocleptes villiersi (Lepesme, 1942) comb. nov. (both from Dendrochilus); Eidophelus agnathus (Schedl, 1942) comb. nov., and Eidophelus ciliatipennis (Schedl, 1979) comb. nov. (all from Miocryphalus). The following five species were included in Karlseniusgen. nov. (Trypophloeini): Karlsenius klainedoxae (Schedl, 1957) comb. nov., Karlsenius nitidum (Schedl, 1965) comb. nov., Karlsenius nigrinum (Schedl, 1957) comb. nov., and Karlsenius attenuatus (Eggers, 1935) comb. nov. (from Miocryphalus), and Karlsenius ghanaensis (Schedl, 1977) comb. nov. (from Eidophelus). A time-tree and biogeographical analysis suggested that Madagascar was colonized only once in Micracidini, from East Africa soon after the origin of the tribe in late Cretaceous. Multiple re-colonisations from Madagascar to the mainland have contributed to further diversification of a tribe which is otherwise highly restricted in geographical distribution.

The Ambrosia Beetle Sueus niisimai (Scolytinae: Hyorrhynchini) is Associated with the Canker Disease Fungus Diatrypella japonica (Xylariales)

Ambrosia beetles in the subtribe Hyorrhynchini are one example of an entire ambrosia beetle lineage whose fungi have never been studied. Here, we identify one dominant fungus associated with a widespread Asian hyorrhynchine beetle Sueus niisimai. This fungus was consistently isolated from beetle galleries from multiple collections. Phylogenetic analyses of combined ITS rDNA and β-tubulin sequences identified the primary fungal symbiont as Diatrypella japonica Higuchi, Nikaido & Hattori (Diatrypaceae, Xylariales, Sordariomycetes), which was recently described as a pathogen of sycamore (Platanus spp.) in Japan. To assess the invasion potential of this beetle-fungus interaction into the U.S., we have investigated the pathogenicity of two D. japonica strains on four species of healthy landscape trees native to the southeastern United States. Only Shumard oak (Quercus shumardii) responded with lesions significantly greater than the control inoculations, but there was no observable dieback or tree mortality. Although disease symptoms were not as prominent as in previous studies of the same fungus in Japan, routine reisolation from the inoculation point suggests that this species is capable of colonizing healthy sapwood of several tree species. Our study shows that the geographical area of its distribution is broader in Asia and potentially includes many hosts of its polyphagous vector. We conclude that the Sueus-Diatrypella symbiosis has high invasion potential but low damage potential, at least on young trees during the growing season.

A monograph of the Xyleborini (Coleoptera, Curculionidae, Scolytinae) of the Indochinese Peninsula (except Malaysia) and China

The Southeast Asian xyleborine ambrosia beetle fauna is reviewed for the first time. Thirty-four genera and 315 species are reviewed, illustrated, and keyed to genera and species. Sixty-three new species are described: Amasa cycloxyster sp. nov., Amasa galeoderma sp. nov., Amasa gibbosa sp. nov., Amasa lini sp. nov., Amasa tropidacron sp. nov., Amasa youlii sp. nov., Ambrosiophilus caliginestris sp. nov., Ambrosiophilus indicus sp. nov., Ambrosiophilus lannaensis sp. nov., Ambrosiophilus papilliferus sp. nov., Ambrosiophilus wantaneeae sp. nov., Anisandrus achaete sp. nov., Anisandrus auco sp. nov., Anisandrus auratipilus sp. nov., Anisandrus congruens sp. nov., Anisandrus cryphaloides sp. nov., Anisandrus feronia sp. nov., Anisandrus hera sp. nov., Anisandrus paragogus sp. nov., Anisandrus sinivali sp. nov., Anisandrus venustus sp. nov., Anisandrus xuannu sp. nov., Arixyleborus crassior sp. nov., Arixyleborus phiaoacensis sp. nov., Arixyleborus setosus sp. nov., Arixyleborus silvanus sp. nov., Arixyleborus sittichayai sp. nov., Arixyleborus titanus sp. nov., Coptodryas amydra sp. nov., Coptodryas carinata sp. nov., Coptodryas inornata sp. nov., Cyclorhipidion amasoides sp. nov., Cyclorhipidion amputatum sp. nov., Cyclorhipidion denticauda sp. nov., Cyclorhipidion muticum sp. nov., Cyclorhipidion obesulum sp. nov., Cyclorhipidion petrosum sp. nov., Cyclorhipidion truncaudinum sp. nov., Cyclorhipidion xeniolum sp. nov., Euwallacea geminus sp. nov., Euwallacea neptis sp. nov., Euwallacea subalpinus sp. nov., Euwallacea testudinatus sp. nov., Heteroborips fastigatus sp. nov., Heteroborips indicus sp. nov., Microperus latesalebrinus sp. nov., Microperus minax sp. nov., Microperus sagmatus sp. nov., Streptocranus petilus sp. nov., Truncaudum bullatum sp. nov., Xyleborinus cuneatus sp. nov., Xyleborinus disgregus sp. nov., Xyleborinus echinopterus sp. nov., Xyleborinus ephialtodes sp. nov., Xyleborinus huifenyinae sp. nov., Xyleborinus jianghuansuni sp. nov., Xyleborinus thaiphami sp. nov., Xyleborinus tritus sp. nov., Xyleborus opacus sp. nov., Xyleborus sunisae sp. nov., Xyleborus yunnanensis sp. nov., Xylosandrus bellinsulanus sp. nov., Xylosandrus spinifer sp. nov.. Thirteen new combinations are given: Ambrosiophilus consimilis (Eggers) comb. nov., Anisandrus carinensis (Eggers) comb. nov., Anisandrus cristatus (Hagedorn) comb. nov., Anisandrus klapperichi (Schedl) comb. nov., Anisandrus percristatus (Eggers) comb. nov., Arixyleborus resecans (Eggers) comb. nov., Cyclorhipidion armiger (Schedl) comb. nov., Debus quadrispinus (Motschulsky) comb. nov., Heteroborips tristis (Eggers) comb. nov., Leptoxyleborus machili (Niisima) comb. nov., Microperus cruralis (Schedl) comb. nov., Planiculus shiva (Maiti & Saha) comb. nov., Xylosandrus formosae (Wood) comb. nov. Twenty-four new synonyms are proposed: Ambrosiophilus osumiensis (Murayama, 1934) (= Xyleborus nodulosus Eggers, 1941 syn. nov.); Ambrosiophilus subnepotulus (Eggers, 1930) (= Xyleborus cristatuloides Schedl, 1971 syn. nov.); Ambrosiophilus sulcatus (Eggers, 1930) (= Xyleborus sinensis Eggers, 1941 syn. nov.; = Xyleborus sulcatulus Eggers, 1939 syn. nov.); Anisandrus hirtus (Hagedorn, 1904) (= Xyleborus hirtipes Schedl, 1969 syn. nov.); Cnestus protensus (Eggers, 1930) (= Cnestus rostratus Schedl, 1977 syn. nov.); Cyclorhipidion bodoanum (Reitter, 1913) (= Xyleborus misatoensis Nobuchi, 1981 syn. nov.); Cyclorhipidion distinguendum (Eggers, 1930) (= Xyleborus fukiensis Eggers, 1941 syn. nov.; = Xyleborus ganshoensis Murayama, 1952 syn. nov.); Cyclorhipidion inarmatum (Eggers, 1923) (= Xyleborus vagans Schedl, 1977 syn. nov.); Debus quadrispinus (Motschulsky, 1863) (= Xyleborus fallax Eichhoff, 1878 syn. nov.); Euwallacea gravelyi (Wichmann, 1914) (= Xyleborus barbatomorphus Schedl, 1951 syn. nov.); Euwallacea perbrevis (Schedl, 1951) (= Xyleborus molestulus Wood, 1975 syn. nov.; Euwallacea semirudis (Blandford, 1896) (= Xyleborus neohybridus Schedl, 1942 syn. nov.); Euwallacea sibsagaricus (Eggers, 1930) (= Xyleborus tonkinensis Schedl, 1934 syn. nov.); Euwallacea velatus (Sampson, 1913) (= Xyleborus rudis Eggers, 1930 syn. nov.); Microperus kadoyamaensis (Murayama, 1934) (= Xyleborus pubipennis Schedl, 1974 syn. nov.; =Xyleborus denseseriatus Eggers, 1941 syn. nov.); Stictodex dimidiatus (Eggers, 1927) (=Xyleborus dorsosulcatus Beeson, 1930 syn. nov.); Webbia trigintispinata Sampson, 1922 (= Webbia mucronatus Eggers, 1927 syn. nov.); Xyleborinus artestriatus (Eichhoff, 1878) (= Xyelborus angustior [sic] Eggers, 1925 syn. nov.; = Xyleborus undatus Schedl, 1974 syn. nov.); Xyleborinus exiguus (Walker, 1859) (= Xyleborus diversus Schedl, 1954 syn. nov.); Xyleborus muticus Blandford, 1894 (= Xyleborus conditus Schedl, 1971 syn. nov.; = Xyleborus lignographus Schedl, 1953 syn. nov.). Seven species are removed from synonymy and reinstated as valid species: Anisandrus cristatus (Hagedorn, 1908), Cyclorhipidion tenuigraphum (Schedl, 1953), Diuncus ciliatoformis (Schedl, 1953), Euwallacea gravelyi (Wichmann, 1914), Euwallacea semirudis (Blandford, 1896), Microperus fulvulus (Schedl, 1942), Xyleborinus subspinosus (Eggers, 1930).

Micro-computed tomography permits enhanced visualization of mycangia across development and between sexes in Euwallacea ambrosia beetles

Symbiosis can facilitate the development of specialized organs in the host body to maintain relationships with beneficial microorganisms. To understand the developmental and genetic mechanisms by which such organs develop, it is critical to first investigate the morphology and developmental timing of these structures during the onset of host development. We utilized micro-computed tomography (μCT) to describe the morphology and development of mycangia, a specialized organ, in the Asian ambrosia beetle species Euwallacea validus which maintains a mutualistic relationship with the Ascomycete fungus, Fusarium oligoseptatum. We scanned animals in larval, pupal and adult life stages and identified that mycangia develop during the late pupal stage. Here we reconcile preliminary evidence and provide additional morphological data for a second paired set of structures, including the superior, medial mycangia and an inferior, lateral pair of pouch-like structures, in both late-stage pupae and adult female beetles. Furthermore, we report the possible development of rudimentary, or partially developed pairs of medial mycangia in adult male beetles which has never been reported for any male Xyleborini. Our results illustrate the validity of μCT in observing soft tissues and the complex nature of mycangia morphology and development.

Fungus-growing insects host a distinctive microbiota apparently adapted to the fungiculture environment

Some lineages of ants, termites, and beetles independently evolved a symbiotic association with lignocellulolytic fungi cultivated for food, in a lifestyle known as fungiculture. Fungus-growing insects' symbiosis also hosts a bacterial community thought to integrate their physiology. Similarities in taxonomic composition support the microbiota of fungus-growing insects as convergent, despite differences in fungus-rearing by these insects. Here, by comparing fungus-growing insects to several hosts ranging diverse dietary patterns, we investigate whether the microbiota taxonomic and functional profiles are characteristic of the fungiculture environment. Compared to other hosts, the microbiota associated with fungus-growing insects presents a distinctive taxonomic profile, dominated by Gammaproteobacteria at class level and by Pseudomonas at genera level. Even with a functional profile presenting similarities with the gut microbiota of herbivorous and omnivorous hosts, some differentially abundant features codified by the microbiota of fungus-growing insects suggest these communities occupying microhabitats that are characteristic of fungiculture. These features include metabolic pathways involved in lignocellulose breakdown, detoxification of plant secondary metabolites, metabolism of simple sugars, fungal cell wall deconstruction, biofilm formation, antimicrobials biosynthesis, and metabolism of diverse nutrients. Our results suggest that the microbiota could be functionally adapted to the fungiculture environment, codifying metabolic pathways potentially relevant to the fungus-growing insects' ecosystems functioning.

Lipids and small metabolites provisioned by ambrosia fungi to symbiotic beetles are phylogeny-dependent, not convergent

Long-term symbiotic associations often lead to reciprocal adaptation between the involved entities. One of the main challenges for studies of such symbioses is differentiating adaptation from neutral processes and phylogenetic background. Ambrosia fungi, cultivated by ambrosia beetles as their sole food source, provide an excellent model to study evolutionary adaptation in a comparative framework because they evolved many times, and each origin bears features seemingly convergently adapted to the symbiosis. We tested whether the symbiotic lifestyle of unrelated ambrosia fungi has led to convergence in the key feature of the symbiotic phenotype-nutrition provisioning to the vector beetles. We compared conidia and mycelium content in three phylogenetic pairs of ambrosia fungi and their closely related nonambrosia relatives using an untargeted metabolomic assay. Multivariate analysis of 311 polar metabolites and 14063 lipid features revealed no convergence of nutrient content across ambrosia lineages. Instead, most variation of the metabolome composition was explained by phylogenetic relationships among the fungi. Thus the overall metabolome evolution of each ambrosia fungus is mostly driven by its inherited metabolism rather than the transition toward symbiosis. We identified eight candidate lipid compounds with expression levels different between the swollen ambrosia spores and other tissues, but they were not consistently elevated across ambrosia fungi. We conclude that ambrosia provisions consist either of nonspecific nutrients in elevated amounts, or of metabolites that are specific to each of the ambrosia symbioses.

Ecology and Evolution of Insect-Fungus Mutualisms

The evolution of a mutualism requires reciprocal interactions whereby one species provides a service that the other species cannot perform or performs less efficiently. Services exchanged in insect-fungus mutualisms include nutrition, protection, and dispersal. In ectosymbioses, which are the focus of this review, fungi can be consumed by insects or can degrade plant polymers or defensive compounds, thereby making a substrate available to insects. They can also protect against environmental factors and produce compounds antagonistic to microbial competitors. Insects disperse fungi and can also provide fungal growth substrates and protection. Insect-fungus mutualisms can transition from facultative to obligate, whereby each partner is no longer viable on its own. Obligate dependency has (a) resulted in the evolution of morphological adaptations in insects and fungi, (b) driven the evolution of social behaviors in some groups of insects, and (c) led to the loss of sexuality in some fungal mutualists.

Cretaceous beetles (Insecta: Coleoptera) in amber: the palaeoecology of this most diverse group of insects

Beetles, the most successful group of invertebrates on Earth, have a worldwide distribution and an outstanding fossil record. In addition, they are well known as inclusions in fossil resin. In historical studies of fossil material, specimens were often named and described without placing the taxa in an ecological context. However, the research philosophy for fossil beetles has changed over the past few years. In this article, we summarize the palaeoecological interpretations of fossil beetles from Cretaceous ambers, which includes species from 69 families, most of which were described during the last 3 years. By analysing current habits of those families, we argue that saproxylicity was the most common feeding strategy for these fossil beetles. More specifically, fungivorous species appear to dominate. In contrast, we find only anecdotal evidence for the presence of wood-boring groups, and it is thus necessary to identify alternative abiotic or biotic processes that are responsible for the copious resin production at this time. Finally, the recent description of some beetles as gymnosperm pollinators during the Cretaceous lends more weight to the importance of amber studies in addressing the role of beetles in the evolution of pollination strategies.

Patterns of coevolution between ambrosia beetle mycangia and the Ceratocystidaceae, with five new fungal genera and seven new species

Ambrosia beetles farm specialised fungi in sapwood tunnels and use pocket-like organs called mycangia to carry propagules of the fungal cultivars. Ambrosia fungi selectively grow in mycangia, which is central to the symbiosis, but the history of coevolution between fungal cultivars and mycangia is poorly understood. The fungal family Ceratocystidaceae previously included three ambrosial genera (Ambrosiella, Meredithiella, and Phialophoropsis), each farmed by one of three distantly related tribes of ambrosia beetles with unique and relatively large mycangium types. Studies on the phylogenetic relationships and evolutionary histories of these three genera were expanded with the previously unstudied ambrosia fungi associated with a fourth mycangium type, that of the tribe Scolytoplatypodini. Using ITS rDNA barcoding and a concatenated dataset of six loci (28S rDNA, 18S rDNA, tef1-α, tub, mcm7, and rpl1), a comprehensive phylogeny of the family Ceratocystidaceae was developed, including Inodoromyces interjectus gen. & sp. nov., a non-ambrosial species that is closely related to the family. Three minor morphological variants of the pronotal disk mycangium of the Scolytoplatypodini were associated with ambrosia fungi in three respective clades of Ceratocystidaceae: Wolfgangiella gen. nov., Toshionella gen. nov., and Ambrosiella remansi sp. nov. Closely-related species that are not symbionts of ambrosia beetles are accommodated by Catunica adiposa gen. & comb. nov. and Solaloca norvegica gen. & comb. nov. The divergent morphology of the ambrosial genera and their phylogenetic placement among non-ambrosial genera suggest three domestication events in the Ceratocystidaceae. Estimated divergence dates for the ambrosia fungi and mycangia suggest that Scolytoplatypodini mycangia may have been the first to acquire Ceratocystidaceae symbionts and other ambrosial fungal genera emerged shortly after the evolution of new mycangium types. There is no evidence of reversion to a non-ambrosial lifestyle in the mycangial symbionts.

Nematode-free agricultural system of a fungus-growing termite

Fungus-growing termites forage dead plant materials from the field to cultivate symbiotic Termitomyces fungi in the nest. Termite foraging behavior and the entry of symbiotic arthropod inquilines may transfer nematodes into a nest and adversely affect fungus production. To test whether nematodes were transferred to fungus gardens by termites and inquilines, we examined the occurrence of nematodes in fungus gardens, five termite castes, and nine species of inquilines of a fungus-growing termite, Odontotermes formosanus. Our results revealed that nematodes were commonly carried by foraging termites and beetle inquilines. Numerous nematodes were found under the beetle elytra. No nematodes were found on termite larvae, eggs, and wingless inquilines. In addition, nematodes rarely occurred in the fungus garden. By observing the response of nematodes to three species of Termitomyces spp. and the fungus gardens, we confirmed that the fungus and fungus gardens are not actually toxic to nematodes. We suggest that nematodes were suppressed through grooming behavior and gut antimicrobial activity in termites, rather than through the antimicrobial activity of the fungus.

Genomic Signals of Adaptation towards Mutualism and Sociality in Two Ambrosia Beetle Complexes

Mutualistic symbiosis and eusociality have developed through gradual evolutionary processes at different times in specific lineages. Like some species of termites and ants, ambrosia beetles have independently evolved a mutualistic nutritional symbiosis with fungi, which has been associated with the evolution of complex social behaviors in some members of this group. We sequenced the transcriptomes of two ambrosia complexes (Euwallacea sp. near fornicatus–Fusarium euwallaceae and Xyleborus glabratus–Raffaelea lauricola) to find evolutionary signatures associated with mutualism and behavior evolution. We identified signatures of positive selection in genes related to nutrient homeostasis; regulation of gene expression; development and function of the nervous system, which may be involved in diet specialization; behavioral changes; and social evolution in this lineage. Finally, we found convergent changes in evolutionary rates of proteins across lineages with phylogenetically independent origins of sociality and mutualism, suggesting a constrained evolution of conserved genes in social species, and an evolutionary rate acceleration related to changes in selective pressures in mutualistic lineages.

The Weevil Fauna Preserved in Burmese Amber—Snapshot of a Unique, Extinct Lineage (Coleoptera: Curculionoidea)

Only a few weevils have been described from Burmese amber, and although most have been misclassified, they show unusual and specialised characters unknown in extant weevils. In this paper, we present the results of a study of a much larger and more diverse selection of Burmese amber weevils. We prepared all amber blocks to maximise visibility of structures and examined these with high-magnification light microscopy as well as CT scanning (selected specimens). We redescribe most previously described taxa and describe 52 new species in 26 new genera, accompanied by photographs. We compare critical characters of these weevils with those of extant taxa and outline the effects of distortion on their preservation and interpretation. We conclude that only two weevil families are thus far represented in Burmese amber, Nemonychidae and a newly recognised family, Mesophyletidae, which appears closely related to Attelabidae but cannot be accommodated in this family. The geniculate antennae and long rostrum with exodont mandibles of most Mesophyletidae indicate that they were highly specialised phytophages of early angiosperms preserved in the amber, likely ovipositing in flowers or seeds. This weevil fauna appears to represent an extinct mid-Cretaceous ecosystem and fills a critical gap in the fossil record of weevils.

Detecting Symbioses in Complex Communities: the Fungal Symbionts of Bark and Ambrosia Beetles Within Asian Pines

Separating symbioses from incidental associations is a major obstacle in symbiosis research. In this survey of fungi associated with Asian bark and ambrosia beetles, we used quantitative culture and DNA barcode identification to characterize fungal communities associated with co-infesting beetle species in pines (Pinus) of China and Vietnam. To quantitatively discern likely symbioses from coincidental associations, we used multivariate analysis and multilevel pattern analysis (a type of indicator species analysis). Nearly half of the variation in fungal community composition in beetle galleries and on beetle bodies was explained by beetle species. We inferred a spectrum of ecological strategies among beetle-associated fungi: from generalist multispecies associates to highly specialized single-host symbionts that were consistently dominant within the mycangia of their hosts. Statistically significant fungal associates of ambrosia beetles were typically only found with one beetle species. In contrast, bark beetle-associated fungi were often associated with multiple beetle species. Ambrosia beetles and their galleries were frequently colonized by low-prevalence ambrosia fungi, suggesting that facultative ambrosial associations are commonplace, and ecological mechanisms such as specialization and competition may be important in these dynamic associations. The approach used here could effectively delimit symbiotic interactions in any system where symbioses are obscured by frequent incidental associations. It has multiple advantages including (1) powerful statistical tests for non-random associations among potential symbionts, (2) simultaneous evaluation of multiple co-occurring host and symbiont associations, and (3) identifying symbionts that are significantly associated with multiple host species.

Symbiont selection via alcohol benefits fungus farming by ambrosia beetles

Ambrosia beetles are among the true fungus-farming insects and cultivate fungal gardens on which the larvae and adults feed. After invading new habitats, some species destructively attack living or weakened trees growing in managed and unmanaged settings. Ambrosia beetles adapted to weakened trees tunnel into stem tissues containing ethanol to farm their symbiotic fungi, even though ethanol is a potent antimicrobial agent that inhibits the growth of various fungi, yeasts, and bacteria. Here we demonstrate that ambrosia beetles rely on ethanol for host tree colonization because it promotes the growth of their fungal gardens while inhibiting the growth of “weedy” fungal competitors. We propose that ambrosia beetles use ethanol to optimize their food production.

Animal–microbe mutualisms are typically maintained by vertical symbiont transmission or partner choice. A third mechanism, screening of high-quality symbionts, has been predicted in theory, but empirical examples are rare. Here we demonstrate that ambrosia beetles rely on ethanol within host trees for promoting gardens of their fungal symbiont and producing offspring. Ethanol has long been known as the main attractant for many of these fungus-farming beetles as they select host trees in which they excavate tunnels and cultivate fungal gardens. More than 300 attacks by Xylosandrus germanus and other species were triggered by baiting trees with ethanol lures, but none of the foundresses established fungal gardens or produced broods unless tree tissues contained in vivo ethanol resulting from irrigation with ethanol solutions. More X. germanus brood were also produced in a rearing substrate containing ethanol. These benefits are a result of increased food supply via the positive effects of ethanol on food-fungus biomass. Selected Ambrosiella and Raffaelea fungal isolates from ethanol-responsive ambrosia beetles profited directly and indirectly by (i) a higher biomass on medium containing ethanol, (ii) strong alcohol dehydrogenase enzymatic activity, and (iii) a competitive advantage over weedy fungal garden competitors (Aspergillus, Penicillium) that are inhibited by ethanol. As ambrosia fungi both detoxify and produce ethanol, they may maintain the selectivity of their alcohol-rich habitat for their own purpose and that of other ethanol-resistant/producing microbes. This resembles biological screening of beneficial symbionts and a potentially widespread, unstudied benefit of alcohol-producing symbionts (e.g., yeasts) in other microbial symbioses.

Know your farmer: Ancient origins and multiple independent domestications of ambrosia beetle fungal cultivars

Bark and ambrosia beetles are highly specialized weevils (Curculionidae) that have established diverse symbioses with fungi, most often from the order Ophiostomatales (Ascomycota, Sordariomycetes). The two types of beetles are distinguished by their feeding habits and intimacy of interactions with their symbiotic fungi. The tree tissue diet of bark beetles is facilitated by fungi, while ambrosia beetles feed solely on fungi that they farm. The farming life history strategy requires domestication of a fungus, which the beetles consume as their sole food source. Ambrosia beetles in the subfamily Platypodinae originated in the mid-Cretaceous (119-88 Ma) and are the oldest known group of farming insects. However, attempts to resolve phylogenetic relationships and the timing of domestication events for fungal cultivars have been largely inconclusive. We sequenced the genomes of 12 ambrosia beetle fungal cultivars and bark beetle associates, including the devastating laurel wilt pathogen, Raffaelea lauricola, to estimate a robust phylogeny of the Ophiostomatales. We find evidence for contemporaneous diversification of the beetles and their associated fungi, followed by three independent domestication events of the ambrosia fungi genus Raffaelea. We estimate the first domestication of an Ophiostomatales fungus occurred ~86 Ma, 25 million years earlier than prior estimates and in close agreement with the estimated age of farming in the Platypodinae (96 Ma). Comparisons of the timing of fungal domestication events with the timing of beetle radiations support the hypothesis that the first large beetle radiations may have spread domesticated "ambrosia" fungi to other fungi-associated beetle groups, perhaps facilitating the evolution of new farming lineages.

Ancient diversity of Afrotropical Microborus: three endemic species - not one widespread

The primarily Neotropical genus Microborus Blandford is represented with three species in Africa and Madagascar. The previously recorded species from this region, M.boops Blandford, is a Neotropical species restricted to Central America and is likely not found in the Afrotropics. The previously recognised species in western parts of Africa is M.camerunus (Eggers) and is resurrected from synonymy under M.boops. Molecular and morphological data revealed a second species of this complex in Madagascar, M.brevisetosus Jordal. Another new species, M.angustus Jordal, co-occurs with M.camerunus in Cameroon. Substantial genetic divergence indicate that Microborus was established in the Afrotropical region long before human transport across oceans. A key to Afrotropical species is provided.

Wood decay fungus Flavodon ambrosius (Basidiomycota: Polyporales) is widely farmed by two genera of ambrosia beetles

The ambrosia fungus Flavodon ambrosius is the primary nutritional mutualist of ambrosia beetles Ambrosiodmus and Ambrosiophilus in North America. F. ambrosius is the only known ambrosial basidiomycete, unique in its efficient lignocellulose degradation. F. ambrosius is associated with both native American beetle species and species introduced from Asia. It remains unknown whether F. ambrosius is strictly a North American fungus, or whether it is also associated with these ambrosia beetle genera on other continents. We isolated fungi from the mycangia and galleries of ambrosia beetles Ambrosiodmus rubricollis, Ambrosiodmus minor, Ambrosiophilus atratus, and Ambrosiophilus subnepotulus in China, South Korea, and Vietnam. Phylogenetic analyses suggest that all Asian and North American isolates represent a single haplotype. These results confirm Flavodon ambrosius as the exclusive mutualistic fungus of multiple Ambrosiodmus and Ambrosiophilus beetle species around the world, making it the most widespread known ambrosia fungus species, both geographically and in terms of the number of beetle species. The Flavodon-beetle symbiosis appears to employ an unusually strict mechanism for maintaining fidelity, compared to the symbioses of the related Xyleborini beetles, which mostly vector more dynamic fungal communities.

Evolutionary feedbacks between insect sociality and microbial management

Fitness-determining interactions with microbes-in particular fungi-have often been considered a by-product of social evolution in insects. Here, we take the view that both beneficial and harmful microbial consortia are major drivers of social behaviours in many insect systems-ranging from aggregation to eusociality. We propose evolutionary feedbacks between the insect sociality and microbial communities that strengthen mutualistic interactions with beneficial (dietary or defensive) microbes and simultaneously increase the capacity to defend against pathogens (i.e. social immunity). We identified variation in habitat stability-as determined by breeding site predictability and ephemerality-as a main ecological factor that constrains these feedbacks. To test this hypothesis we suggest following the evolution of insect social traits upon experimental manipulation of habitat stability and microbial consortia.

The Ambrosia Symbiosis: From Evolutionary Ecology to Practical Management

The ambrosia beetle-fungus farming symbiosis is more heterogeneous than previously thought. There is not one but many ambrosia symbioses. Beetle-fungus specificity is clade dependent and ranges from strict to promiscuous. Each new origin has evolved a new mycangium. The most common relationship with host trees is colonization of freshly dead tissues, but there are also parasites of living trees, vectors of pathogenic fungi, and beetles living in rotten trees with a wood-decay symbiont. Most of these strategies are driven by fungal metabolism whereas beetle ecology is evolutionarily more flexible. The ambrosia lifestyle facilitated a radiation of social strategies, from fungus thieves to eusocial species to communities assembled by attraction to fungal scent. Although over 95% of the symbiotic pairs are economically harmless, there are also three types of pest damage: tree pathogen inoculation, mass accumulation on susceptible hosts, and structural damage. Beetles able to colonize live tree tissues are most likely to become invasive pests.

Genomic Mining of Phylogenetically Informative Nuclear Markers in Bark and Ambrosia Beetles

Deep level insect relationships are generally difficult to resolve, especially within taxa of the most diverse and species rich holometabolous orders. In beetles, the major diversity occurs in the Phytophaga, including charismatic groups such as leaf beetles, longhorn beetles and weevils. Bark and ambrosia beetles are wood boring weevils that contribute 12 percent of the diversity encountered in Curculionidae, one of the largest families of beetles with more than 50000 described species. Phylogenetic resolution in groups of Cretaceous age has proven particularly difficult and requires large quantity of data. In this study, we investigated 100 nuclear genes in order to select a number of markers with low evolutionary rates and high phylogenetic signal. A PCR screening using degenerate primers was applied to 26 different weevil species. We obtained sequences from 57 of the 100 targeted genes. Sequences from each nuclear marker were aligned and examined for detecting multiple copies, pseudogenes and introns. Phylogenetic informativeness (PI) and the capacity for reconstruction of previously established phylogenetic relationships were used as proxies for selecting a subset of the 57 amplified genes. Finally, we selected 16 markers suitable for large-scale phylogenetics of Scolytinae and related weevil taxa.

Oligocene Termite Nests with In Situ Fungus Gardens from the Rukwa Rift Basin, Tanzania, Support a Paleogene African Origin for Insect Agriculture

Based on molecular dating, the origin of insect agriculture is hypothesized to have taken place independently in three clades of fungus-farming insects: the termites, ants or ambrosia beetles during the Paleogene (66–24 Ma). Yet, definitive fossil evidence of fungus-growing behavior has been elusive, with no unequivocal records prior to the late Miocene (7–10 Ma). Here we report fossil evidence of insect agriculture in the form of fossil fungus gardens, preserved within 25 Ma termite nests from southwestern Tanzania. Using these well-dated fossil fungus gardens, we have recalibrated molecular divergence estimates for the origins of termite agriculture to around 31 Ma, lending support to hypotheses suggesting an African Paleogene origin for termite-fungus symbiosis; perhaps coinciding with rift initiation and changes in the African landscape.

Three genera in the Ceratocystidaceae are the respective symbionts of three independent lineages of ambrosia beetles with large, complex mycangia

The genus Ambrosiella accommodates species of Ceratocystidaceae (Microascales) that are obligate, mutualistic symbionts of ambrosia beetles, but the genus appears to be polyphyletic and more diverse than previously recognized. In addition to Ambrosiella xylebori, Ambrosiella hartigii, Ambrosiella beaveri, and Ambrosiella roeperi, three new species of Ambrosiella are described from the ambrosia beetle tribe Xyleborini: Ambrosiella nakashimae sp. nov. from Xylosandrus amputatus, Ambrosiella batrae sp. nov. from Anisandrus sayi, and Ambrosiella grosmanniae sp. nov. from Xylosandrus germanus. The genus Meredithiella gen. nov. is created for symbionts of the tribe Corthylini, based on Meredithiella norrisii sp. nov. from Corthylus punctatissimus. The genus Phialophoropsis is resurrected to accommodate associates of the Xyloterini, including Phialophoropsis trypodendri from Trypodendron scabricollis and Phialophoropsis ferruginea comb. nov. from Trypodendron lineatum. Each of the ten named species was distinguished by ITS rDNA barcoding and morphology, and the ITS rDNA sequences of four other putative species were obtained with Ceratocystidaceae-specific primers and template DNA extracted from beetles or galleries. These results support the hypothesis that each ambrosia beetle species with large, complex mycangia carries its own fungal symbiont. Conidiophore morphology and phylogenetic analyses using 18S (SSU) rDNA and TEF1α DNA sequences suggest that these three fungal genera within the Ceratocystidaceae independently adapted to symbiosis with the three respective beetle tribes. In turn, the beetle genera with large, complex mycangia appear to have evolved from other genera in their respective tribes that have smaller, less selective mycangia and are associated with Raffaelea spp. (Ophiostomatales).

Molecular phylogeny and biogeography of the weevil subfamily Platypodinae reveals evolutionarily conserved range patterns

Platypodinae is a peculiar weevil subfamily of species that cultivate fungi in tunnels excavated in dead wood. Their geographical distribution is generally restricted, with genera confined to a single continent or large island, which provides a useful system for biogeographical research. This study establishes the first detailed molecular phylogeny of the group, with the aim of testing hypotheses on classification, diversification, and biogeography. A phylogeny was reconstructed based on 3648 nucleotides from COI, EF-1α, CAD, ArgK, and 28S. Tree topology was well resolved and indicated a strong correlation with geography, more so than predicted by previous morphology-based classifications. Tesserocerini was paraphyletic, with Notoplatypus as the sister group to a clade consisting of three main lineages of Tesserocerini and the recently evolved Platypodini. Austroplatypus formed the sister group to all remaining Platypodini and hence confirmed its separate status from Platypus. The Indo-Australian genera of Platypodini were strikingly paraphyletic, suggesting that the taxonomy of this tribe needs careful revision. Ancestral-area reconstructions in Lagrange and S-DIVA were ambiguous for nodes roughly older than 80 Ma. More recent events were firmly assessed and involved post-Gondwanan long-distance dispersal. The Neotropics was colonized three times, all from the Afrotropical region, with the latest event less than 25 Ma that included the ancestor of all Neotropical Platypodini.