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Vercellino RB, Hernández F, Presotto A. The role of intraspecific crop-weed hybridization in the evolution of weediness and invasiveness: Cultivated and weedy radish (Raphanus sativus) as a case study. AMERICAN JOURNAL OF BOTANY 2023; 110:e16217. [PMID: 37659092 DOI: 10.1002/ajb2.16217] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2023] [Revised: 05/26/2023] [Accepted: 05/30/2023] [Indexed: 09/04/2023]
Abstract
PREMISE The phenotype of hybrids between a crop and its wild or weed counterpart is usually intermediate and maladapted compared to that of their parents; however, hybridization has sometimes been associated with increased fitness, potentially leading to enhanced weediness and invasiveness. Since the ecological context and maternal genetic effects may affect hybrid fitness, they could influence the evolutionary outcomes of hybridization. Here, we evaluated the performance of first-generation crop-weed hybrids of Raphanus sativus and their parents in two contrasting ecological conditions. METHODS Using experimental hybridization and outdoor common garden experiments, we assessed differences in time to flowering, survival to maturity, plant biomass, and reproductive components between bidirectional crop-weed hybrids and their parents in agrestal (wheat cultivation, fertilization, weeding) and ruderal (human-disturbed, uncultivated area) conditions over 2 years. RESULTS Crop, weeds, and bidirectional hybrids overlapped at least partially during the flowering period, indicating a high probability of gene flow. Hybrids survived to maturity at rates at least as successful as their parents and had higher plant biomass and fecundity, which resulted in higher fitness compared to their parents in both environments, without any differences associated with the direction of the hybridization. CONCLUSIONS Intraspecific crop-weed hybridization, regardless of the cross direction, has the potential to promote weediness in weedy R. sativus in agrestal and ruderal environments, increasing the chances for introgression of crop alleles into weed populations. This is the first report of intraspecific crop-weed hybridization in R. sativus.
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Affiliation(s)
- Román B Vercellino
- Departamento de Agronomía, CERZOS, Universidad Nacional del Sur (UNS)-CONICET, San Andrés 800, Bahía Blanca, 8000, Argentina
| | - Fernando Hernández
- Departamento de Agronomía, CERZOS, Universidad Nacional del Sur (UNS)-CONICET, San Andrés 800, Bahía Blanca, 8000, Argentina
- Department of Zoology and Biodiversity Research Centre, University of British Columbia, Vancouver, British Columbia, Canada
| | - Alejandro Presotto
- Departamento de Agronomía, CERZOS, Universidad Nacional del Sur (UNS)-CONICET, San Andrés 800, Bahía Blanca, 8000, Argentina
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Chen L, Xu M, Liu C, Hao J, Fan S, Han Y. LsMYB15 Regulates Bolting in Leaf Lettuce ( Lactuca sativa L.) Under High-Temperature Stress. FRONTIERS IN PLANT SCIENCE 2022; 13:921021. [PMID: 35837450 PMCID: PMC9275828 DOI: 10.3389/fpls.2022.921021] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/15/2022] [Accepted: 05/30/2022] [Indexed: 06/15/2023]
Abstract
High temperature is one of the primary environmental stress factors affecting the bolting of leaf lettuce. To determine the potential role of melatonin in regulating high-temperature induced bolting in leaf lettuce (Lactuca sativa L.), we conducted melatonin treatment of the bolting-sensitive cultivar "S39." The results showed that 100 μmol L-1 melatonin treatment significantly promoted growth, and melatonin treatment delayed high-temperature-induced bolting in lettuce. RNA-seq analysis revealed that the differentially expressed genes (DEGs) involved in "plant hormone signal transduction" and "phenylpropanoid biosynthesis" were significantly enriched during high-temperature and melatonin treatment. Quantitative reverse transcription polymerase chain reaction (qRT-PCR) analysis suggested that the expression patterns of abscisic acid (ABA)-related genes positively correlated with stem length during leaf lettuce development. Furthermore, weighted gene co-expression network analysis (WGCNA) demonstrated that MYB15 may play an important role in melatonin-induced resistance to high temperatures. Silencing the LsMYB15 gene in leaf lettuce resulted in early bolting, and exogenous melatonin delayed early bolting in leaf lettuce at high temperatures. Our study provides valuable data for future studies of leaf lettuce quality.
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Song X, Yan J, Zhang Y, Li H, Zheng A, Zhang Q, Wang J, Bian Q, Shao Z, Wang Y, Qiang S. Gene Flow Risks From Transgenic Herbicide-Tolerant Crops to Their Wild Relatives Can Be Mitigated by Utilizing Alien Chromosomes. FRONTIERS IN PLANT SCIENCE 2021; 12:670209. [PMID: 34177986 PMCID: PMC8231706 DOI: 10.3389/fpls.2021.670209] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/26/2021] [Accepted: 05/14/2021] [Indexed: 06/13/2023]
Abstract
Integration of a transgene into chromosomes of the C-genomes of oilseed rape (AACC, 2n = 38) may affect their gene flow to wild relatives, particularly Brassica juncea (AABB, 2n = 36). However, no empiric evidence exists in favor of the C-genome as a safer candidate for transformation. In the presence of herbicide selections, the first- to fourth-generation progenies of a B. juncea × glyphosate-tolerant oilseed rape cross [EPSPS gene insertion in the A-genome (Roundup Ready, event RT73)] showed more fitness than a B. juncea × glufosinate-tolerant oilseed rape cross [PAT gene insertion in the C-genome (Liberty Link, event HCN28)]. Karyotyping and fluorescence in situ hybridization-bacterial artificial chromosome (BAC-FISH) analyses showed that crossed progenies from the cultivars with transgenes located on either A- or C- chromosome were mixoploids, and their genomes converged over four generations to 2n = 36 (AABB) and 2n = 37 (AABB + C), respectively. Chromosome pairing of pollen mother cells was more irregular in the progenies from cultivar whose transgene located on C- than on A-chromosome, and the latter lost their C-genome-specific markers faster. Thus, transgene insertion into the different genomes of B. napus affects introgression under herbicide selection. This suggests that gene flow from transgenic crops to wild relatives could be mitigated by breeding transgenic allopolyploid crops, where the transgene is inserted into an alien chromosome.
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Damerum A, Chapman MA, Taylor G. Innovative breeding technologies in lettuce for improved post-harvest quality. POSTHARVEST BIOLOGY AND TECHNOLOGY 2020; 168:111266. [PMID: 33012992 PMCID: PMC7397847 DOI: 10.1016/j.postharvbio.2020.111266] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
Societal awareness of healthy eating is increasing alongside the market for processed bagged salads, which remain as one of the strongest growing food sectors internationally, including most recently from indoor growing systems. Lettuce represents a significant proportion of this ready-to-eat salad market. However, such products typically have a short shelf life, with decay of post-harvest quality occurring through complex biochemical and physiological changes in leaves and resulting in spoilage, food waste and risks to health. We review the functional and quantitative genetic understanding of lettuce post-harvest quality, revealing that few findings have translated into improved cultivar development. We identify (i) phytonutrient status (for enhanced antioxidant and vitamin status, aroma and flavour) (ii) leaf biophysical, cell wall and water relations traits (for longer shelf life) (iii) leaf surface traits (for enhanced food safety and reduced spoilage) and (iv) chlorophyll, other pigments and developmental senescence traits (for appearance and colour), as key targets for future post-harvest breeding. Lettuce is well-placed for rapid future exploitation to address postharvest quality traits with extensive genomic resources including the recent release of the lettuce genome and the development of innovative breeding technologies. Although technologies such as CRISPR/Cas genome editing are paving the way for accelerated crop improvement, other equally important resources available for lettuce include extensive germplasm collections, bi-parental mapping and wide populations with genotyping for genomic selection strategies and extensive multiomic datasets for candidate gene discovery. We discuss current progress towards post-harvest quality breeding for lettuce and how such resources may be utilised for future crop improvement.
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Affiliation(s)
- Annabelle Damerum
- Department of Plant Sciences, University of California, Davis, 95616, USA
| | - Mark A Chapman
- School of Biological Sciences, University of Southampton, Southampton, SO179BJ, UK
| | - Gail Taylor
- Department of Plant Sciences, University of California, Davis, 95616, USA
- School of Biological Sciences, University of Southampton, Southampton, SO179BJ, UK
- Corresponding author at: Department of Plant Sciences, University of California, Davis, 95616, USA.
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Gressel J. Dealing with transgene flow of crop protection traits from crops to their relatives. PEST MANAGEMENT SCIENCE 2015; 71:658-667. [PMID: 24977384 DOI: 10.1002/ps.3850] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2014] [Revised: 06/22/2014] [Accepted: 06/24/2014] [Indexed: 06/03/2023]
Abstract
Genes regularly move within species, to/from crops, as well as to their con- specific progenitors, feral and weedy forms ('vertical' gene flow). Genes occasionally move to/from crops and their distantly related, hardly sexually interbreeding relatives, within a genus or among closely related genera (diagonal gene flow). Regulators have singled out transgene flow as an issue, yet non-transgenic herbicide resistance traits pose equal problems, which cannot be mitigated. The risks are quite different from genes flowing to natural (wild) ecosystems versus ruderal and agroecosystems. Transgenic herbicide resistance poses a major risk if introgressed into weedy relatives; disease and insect resistance less so. Technologies have been proposed to contain genes within crops (chloroplast transformation, male sterility) that imperfectly prevent gene flow by pollen to the wild. Containment does not prevent related weeds from pollinating crops. Repeated backcrossing with weeds as pollen parents results in gene establishment in the weeds. Transgenic mitigation relies on coupling crop protection traits in a tandem construct with traits that lower the fitness of the related weeds. Mitigation traits can be morphological (dwarfing, no seed shatter) or chemical (sensitivity to a chemical used later in a rotation). Tandem mitigation traits are genetically linked and will move together. Mitigation traits can also be spread by inserting them in multicopy transposons which disperse faster than the crop protection genes in related weeds. Thus, there are gene flow risks mainly to weeds from some crop protection traits; risks that can and should be dealt with.
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Liang C, Prins TW, van de Wiel CC, Kok EJ. Safety aspects of genetically modified crops with abiotic stress tolerance. Trends Food Sci Technol 2014. [DOI: 10.1016/j.tifs.2014.08.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Hartman Y, Hooftman DAP, Uwimana B, Schranz ME, van de Wiel CCM, Smulders MJM, Visser RGF, Michelmore RW, van Tienderen PH. Abiotic stress QTL in lettuce crop-wild hybrids: comparing greenhouse and field experiments. Ecol Evol 2014; 4:2395-409. [PMID: 25360276 PMCID: PMC4203288 DOI: 10.1002/ece3.1060] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2013] [Revised: 03/03/2014] [Accepted: 03/11/2014] [Indexed: 11/11/2022] Open
Abstract
The development of stress-tolerant crops is an increasingly important goal of current crop breeding. A higher abiotic stress tolerance could increase the probability of introgression of genes from crops to wild relatives. This is particularly relevant to the discussion on the risks of new GM crops that may be engineered to increase abiotic stress resistance. We investigated abiotic stress QTL in greenhouse and field experiments in which we subjected recombinant inbred lines from a cross between cultivated Lactuca sativa cv. Salinas and its wild relative L. serriola to drought, low nutrients, salt stress, and aboveground competition. Aboveground biomass at the end of the rosette stage was used as a proxy for the performance of plants under a particular stress. We detected a mosaic of abiotic stress QTL over the entire genome with little overlap between QTL from different stresses. The two QTL clusters that were identified reflected general growth rather than specific stress responses and colocated with clusters found in earlier studies for leaf shape and flowering time. Genetic correlations across treatments were often higher among different stress treatments within the same experiment (greenhouse or field), than among the same type of stress applied in different experiments. Moreover, the effects of the field stress treatments were more correlated with those of the greenhouse competition treatments than to those of the other greenhouse stress experiments, suggesting that competition rather than abiotic stress is a major factor in the field. In conclusion, the introgression risk of stress tolerance (trans-)genes under field conditions cannot easily be predicted based on genomic background selection patterns from controlled QTL experiments in greenhouses, especially field data will be needed to assess potential (negative) ecological effects of introgression of these transgenes into wild relatives.
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Affiliation(s)
- Yorike Hartman
- Institute for Biodiversity and Ecosystem Dynamics, Universiteit van Amsterdam Amsterdam, The Netherlands
| | - Danny A P Hooftman
- Institute for Biodiversity and Ecosystem Dynamics, Universiteit van Amsterdam Amsterdam, The Netherlands ; NERC, Centre for Ecology and Hydrology Wallingford, UK
| | - Brigitte Uwimana
- Wageningen UR Plant Breeding, Wageningen University and Research Centre Wageningen, The Netherlands
| | - M Eric Schranz
- Institute for Biodiversity and Ecosystem Dynamics, Universiteit van Amsterdam Amsterdam, The Netherlands
| | - Clemens C M van de Wiel
- Wageningen UR Plant Breeding, Wageningen University and Research Centre Wageningen, The Netherlands
| | - Marinus J M Smulders
- Wageningen UR Plant Breeding, Wageningen University and Research Centre Wageningen, The Netherlands
| | - Richard G F Visser
- Wageningen UR Plant Breeding, Wageningen University and Research Centre Wageningen, The Netherlands
| | - Richard W Michelmore
- Genome Center and Department of Plant Sciences, University of California Davis, California
| | - Peter H van Tienderen
- Institute for Biodiversity and Ecosystem Dynamics, Universiteit van Amsterdam Amsterdam, The Netherlands
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Ellstrand NC, Meirmans P, Rong J, Bartsch D, Ghosh A, de Jong TJ, Haccou P, Lu BR, Snow AA, Neal Stewart C, Strasburg JL, van Tienderen PH, Vrieling K, Hooftman D. Introgression of Crop Alleles into Wild or Weedy Populations. ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS 2013. [DOI: 10.1146/annurev-ecolsys-110512-135840] [Citation(s) in RCA: 149] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Norman C. Ellstrand
- Department of Botany and Plant Sciences, University of California, Riverside, California 92521;
| | - Patrick Meirmans
- Instituut voor Biodiversiteit en Ecosysteem Dynamica, Universiteit van Amsterdam, 1098 XH Amsterdam, The Netherlands;
| | - Jun Rong
- Center for Watershed Ecology, Institute of Life Science and Key Laboratory of Poyang Lake Environment and Resource Utilization, Ministry of Education, Nanchang University, 330031 Honggutan Nanchang, People's Republic of China;
| | - Detlef Bartsch
- Federal Office of Consumer Protection and Food Safety, 10117 Berlin, Germany;
| | - Atiyo Ghosh
- Integrative Systems Biology, Okinawa Institute of Science and Technology, Okinawa 904-0495, Japan;
| | - Tom J. de Jong
- Institute of Biology, Leiden University, 2333 BE Leiden, The Netherlands; ,
| | - Patsy Haccou
- Leiden University College The Hague, Leiden University, 2514 EG The Hague, The Netherlands;
| | - Bao-Rong Lu
- Ministry of Education Key Laboratory for Biodiversity and Ecological Engineering, Department of Ecology and Evolutionary Biology, Fudan University, Shanghai 200433, People's Republic of China; ,
| | - Allison A. Snow
- Department of Evolution, Ecology, and Organismal Biology, The Ohio State University, Columbus, Ohio 43210;
| | - C. Neal Stewart
- Department of Plant Sciences, University of Tennessee, Knoxville, Tennessee 37996;
| | | | - Peter H. van Tienderen
- Instituut voor Biodiversiteit en Ecosysteem Dynamica, Universiteit van Amsterdam, 1090 GE Amsterdam, The Netherlands;
| | - Klaas Vrieling
- Institute of Biology, Leiden University, 2333 BE Leiden, The Netherlands; ,
| | - Danny Hooftman
- Center for Ecology and Hydrology, National Environmental Research Council, Wallingford, Oxfordshire OX10 8BB, United Kingdom;
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Hartman Y, Uwimana B, Hooftman DAP, Schranz ME, van de Wiel CCM, Smulders MJM, Visser RGF, van Tienderen PH. Genomic and environmental selection patterns in two distinct lettuce crop-wild hybrid crosses. Evol Appl 2013; 6:569-84. [PMID: 23789025 PMCID: PMC3684739 DOI: 10.1111/eva.12043] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2012] [Accepted: 11/20/2012] [Indexed: 11/29/2022] Open
Abstract
Genomic selection patterns and hybrid performance influence the chance that crop (trans)genes can spread to wild relatives. We measured fitness(-related) traits in two different field environments employing two different crop–wild crosses of lettuce. We performed quantitative trait loci (QTL) analyses and estimated the fitness distribution of early- and late-generation hybrids. We detected consistent results across field sites and crosses for a fitness QTL at linkage group 7, where a selective advantage was conferred by the wild allele. Two fitness QTL were detected on linkage group 5 and 6, which were unique to one of the crop–wild crosses. Average hybrid fitness was lower than the fitness of the wild parent, but several hybrid lineages outperformed the wild parent, especially in a novel habitat for the wild type. In early-generation hybrids, this may partly be due to heterosis effects, whereas in late-generation hybrids transgressive segregation played a major role. The study of genomic selection patterns can identify crop genomic regions under negative selection across multiple environments and cultivar–wild crosses that might be applicable in transgene mitigation strategies. At the same time, results were cultivar-specific, so that a case-by-case environmental risk assessment is still necessary, decreasing its general applicability.
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Affiliation(s)
- Yorike Hartman
- Institute for Biodiversity and Ecosystem Dynamics, Universiteit van Amsterdam Amsterdam, The Netherlands
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Uwimana B, Smulders MJM, Hooftman DAP, Hartman Y, van Tienderen PH, Jansen J, McHale LK, Michelmore RW, van de Wiel CCM, Visser RGF. Hybridization between crops and wild relatives: the contribution of cultivated lettuce to the vigour of crop-wild hybrids under drought, salinity and nutrient deficiency conditions. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2012; 125:1097-111. [PMID: 22660630 PMCID: PMC3442173 DOI: 10.1007/s00122-012-1897-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2011] [Accepted: 05/11/2012] [Indexed: 05/10/2023]
Abstract
With the development of transgenic crop varieties, crop-wild hybridization has received considerable consideration with regard to the potential of transgenes to be transferred to wild species. Although many studies have shown that crops can hybridize with their wild relatives and that the resulting hybrids may show improved fitness over the wild parents, little is still known on the genetic contribution of the crop parent to the performance of the hybrids. In this study, we investigated the vigour of lettuce hybrids using 98 F(2:3) families from a cross between cultivated lettuce and its wild relative Lactuca serriola under non-stress conditions and under drought, salinity and nutrient deficiency. Using single nucleotide polymorphism markers, we mapped quantitative trait loci associated with plant vigour in the F(2:3) families and determined the allelic contribution of the two parents. Seventeen QTLs (quantitative trait loci) associated with vigour and six QTLs associated with the accumulation of ions (Na(+), Cl(-) and K(+)) were mapped on the nine linkage groups of lettuce. Seven of the vigour QTLs had a positive effect from the crop allele and six had a positive effect from the wild allele across treatments, and four QTLs had a positive effect from the crop allele in one treatment and from the wild allele in another treatment. Based on the allelic effect of the QTLs and their location on the genetic map, we could suggest genomic locations where transgene integration should be avoided when aiming at the mitigation of its persistence once crop-wild hybridization takes place.
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Affiliation(s)
| | | | | | - Yorike Hartman
- IBED, Universiteit van Amsterdam, Amsterdam, The Netherlands
| | | | | | - Leah K. McHale
- Department of Horticulture and Crop Science, Ohio State University, Columbus, USA
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