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Dreyer N, Olesen J, Grygier MJ, Eibye-Jacobsen D, Savchenko AS, Fujita Y, Kolbasov GA, Machida RJ, Chan BKK, Palero F. Novel molecular resources for single-specimen barcoding of enigmatic crustacean y-larvae. INVERTEBR SYST 2024; 38:IS23018. [PMID: 38744526 DOI: 10.1071/is23018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Accepted: 01/08/2024] [Indexed: 05/16/2024]
Abstract
Despite discovery more than 100years ago and documented global occurrence from shallow waters to the deep sea, the life cycle of the enigmatic crustacean y-larvae isincompletely understood and adult forms remain unknown. To date, only 2 of the 17 formally described species, all based on larval stages, have been investigated using an integrative taxonomic approach. This approach provided descriptions of the morphology of the naupliar and cyprid stages, and made use of exuvial voucher material and DNA barcodes. To improve our knowledge about the evolutionary history and ecological importance of y-larvae, we developed a novel protocol that maximises the amount of morpho-ecological and molecular data that can be harvested from single larval specimens. This includes single-specimen DNA barcoding and daily imaging of y-nauplii reared in culture dishes, mounting of the last naupliar exuviae on a slide as a reference voucher, live imaging of the y-cyprid instar that follows, and fixation, DNA extraction, amplification and sequencing of the y-cyprid specimen. Through development and testing of a suite of new primers for both nuclear and mitochondrial protein-coding and ribosomal genes, we showcase how new sequence data can be used to estimate the phylogeny of Facetotecta. We expect that our novel procedure will help to unravel the complex systematics of y-larvae and show how these fascinating larval forms have evolved. Moreover, we posit that our protocols should work on larval specimens from a diverse array of moulting marine invertebrate taxa.
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Affiliation(s)
- Niklas Dreyer
- Natural History Museum of Denmark, University of Copenhagen, Denmark; and Biodiversity Research Center, Academia Sinica, Taipei, Taiwan; and Department of Life Science, National Taiwan Normal University, Taipei, Taiwan; and Biodiversity Program, Taiwan International Graduate Program, Academia Sinica, Taipei, Taiwan; and Present address: Department of Organismic and Evolutionary Biology, Museum of Comparative Zoology, Harvard University, Cambridge, MA, USA
| | - Jørgen Olesen
- Natural History Museum of Denmark, University of Copenhagen, Denmark
| | - Mark J Grygier
- National Museum of Marine Biology & Aquarium, Checheng, Pingtung, Taiwan
| | | | - Alexandra S Savchenko
- Invertebrate Zoology Department, Biological Faculty, Moscow State University, Moscow, Russian Federation
| | - Yoshihisa Fujita
- General Education Center, Okinawa Prefectural University of Arts, Naha, Okinawa, Japan
| | - Gregory A Kolbasov
- White Sea Biological Station, Biological Faculty of Moscow State University, Moscow, Russian Federation
| | - Ryuji J Machida
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
| | - Benny K K Chan
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
| | - Ferran Palero
- Institut Cavanilles de Biodiversitat i Biologia Evolutiva (ICBIBE), University of Valencia, Paterna, Spain
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Dreyer N, Palero F, Grygier MJ, K K Chan B, Olesen J. Single-specimen systematics resolves the phylogeny and diversity conundrum of enigmatic crustacean y-larvae. Mol Phylogenet Evol 2023; 184:107780. [PMID: 37031710 DOI: 10.1016/j.ympev.2023.107780] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2023] [Revised: 04/04/2023] [Accepted: 04/04/2023] [Indexed: 04/11/2023]
Abstract
Resolving the evolutionary history of organisms is a major goal in biology. Yet for some taxa the diversity, phylogeny, and even adult stages remain unknown. The enigmatic crustacean "y-larvae" (Facetotecta) is one particularly striking example. Here we use extensive video-imaging and single-specimen molecular sequencing of >200 y-larval specimens to comprehensively explore for the first time their evolutionary history and diversity. This integrative approach revealed five major clades of Facetotecta, four of which encompass a considerable larval diversity. Whereas morphological analyses recognized 35 y-naupliar "morphospecies", molecular species delimitation analyses suggested the existence of between 88 and 127 species. The phenotypic and genetic diversity between the morphospecies suggests that a more elaborate classification than the current one-genus approach is needed. Morphology and molecular data were highly congruent at shallower phylogenetic levels, but no morphological synapomorphies could be unambiguously identified for major clades, which mostly comprise both planktotrophic and lecithotrophic y-nauplii. We argue that lecithotrophy arose several times independently whereas planktotrophic y-nauplii, which are structurally more similar across clades, most likely display the ancestral feeding mode of Facetotecta. We document a remarkably complex and highly diverse phylogenetic backbone for a taxon of marine crustaceans, the full life cycle of which remains a mystery.
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Affiliation(s)
- Niklas Dreyer
- Natural History Museum of Denmark, University of Copenhagen, Denmark; Biodiversity Research Center, Academia Sinica, Taipei, Taiwan; Department of Life Science, National Taiwan Normal University, Taipei, Taiwan; Biodiversity Program, Taiwan International Graduate Program, Academia Sinica, Taipei, Taiwan
| | - Ferran Palero
- Institut Cavanilles de Biodiversitat i Biologia, Evolutiva (ICBIBE), Valencia, Spain.
| | - Mark J Grygier
- Center of Excellence for the Oceans, National Taiwan Ocean University, Keelung, Taiwan; National Museum of Marine Biology & Aquarium, Checheng, Pingtung, Taiwan
| | - Benny K K Chan
- Biodiversity Program, Taiwan International Graduate Program, Academia Sinica, Taipei, Taiwan.
| | - Jørgen Olesen
- Natural History Museum of Denmark, University of Copenhagen, Denmark.
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Bernot JP, Avdeyev P, Zamyatin A, Dreyer N, Alexeev N, Pérez-Losada M, Crandall KA. Chromosome-level genome assembly, annotation, and phylogenomics of the gooseneck barnacle Pollicipes pollicipes. Gigascience 2022; 11:giac021. [PMID: 35277961 PMCID: PMC8917513 DOI: 10.1093/gigascience/giac021] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2021] [Revised: 01/09/2022] [Accepted: 02/11/2022] [Indexed: 12/28/2022] Open
Abstract
BACKGROUND The barnacles are a group of >2,000 species that have fascinated biologists, including Darwin, for centuries. Their lifestyles are extremely diverse, from free-swimming larvae to sessile adults, and even root-like endoparasites. Barnacles also cause hundreds of millions of dollars of losses annually due to biofouling. However, genomic resources for crustaceans, and barnacles in particular, are lacking. RESULTS Using 62× Pacific Biosciences coverage, 189× Illumina whole-genome sequencing coverage, 203× HiC coverage, and 69× CHi-C coverage, we produced a chromosome-level genome assembly of the gooseneck barnacle Pollicipes pollicipes. The P. pollicipes genome is 770 Mb long and its assembly is one of the most contiguous and complete crustacean genomes available, with a scaffold N50 of 47 Mb and 90.5% of the BUSCO Arthropoda gene set. Using the genome annotation produced here along with transcriptomes of 13 other barnacle species, we completed phylogenomic analyses on a nearly 2 million amino acid alignment. Contrary to previous studies, our phylogenies suggest that the Pollicipedomorpha is monophyletic and sister to the Balanomorpha, which alters our understanding of barnacle larval evolution and suggests homoplasy in a number of naupliar characters. We also compared transcriptomes of P. pollicipes nauplius larvae and adults and found that nearly one-half of the genes in the genome are differentially expressed, highlighting the vastly different transcriptomes of larvae and adult gooseneck barnacles. Annotation of the genes with KEGG and GO terms reveals that these stages exhibit many differences including cuticle binding, chitin binding, microtubule motor activity, and membrane adhesion. CONCLUSION This study provides high-quality genomic resources for a key group of crustaceans. This is especially valuable given the roles P. pollicipes plays in European fisheries, as a sentinel species for coastal ecosystems, and as a model for studying barnacle adhesion as well as its key position in the barnacle tree of life. A combination of genomic, phylogenetic, and transcriptomic analyses here provides valuable insights into the evolution and development of barnacles.
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Affiliation(s)
- James P Bernot
- Computational Biology Institute, Milken Institute School of Public Health, The George Washington University, Washington, DC 20052, USA
- Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20012, USA
| | - Pavel Avdeyev
- Computational Biology Institute, Milken Institute School of Public Health, The George Washington University, Washington, DC 20052, USA
| | - Anton Zamyatin
- Computer Technologies Laboratory, ITMO University, Saint-Petersburg 197101, Russia
| | - Niklas Dreyer
- Department of Life Science, National Taiwan Normal University, Taipei 106, Taiwan
- Biodiversity Program, International Graduate Program, Academia Sinica, Taipei, Taiwan
- Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan
- Natural History Museum of Denmark, University of Copenhagen, Universitetsparken 15, DK-2100, Copenhagen, Denmark
| | - Nikita Alexeev
- Computer Technologies Laboratory, ITMO University, Saint-Petersburg 197101, Russia
| | - Marcos Pérez-Losada
- Computational Biology Institute, Milken Institute School of Public Health, The George Washington University, Washington, DC 20052, USA
- Department of Biostatistics & Bioinformatics, Milken Institute School of Public Health, The George Washington University, Washington, DC 20052, USA
- CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Campus Agrário de Vairão, Vairão 4485-661, Portugal
| | - Keith A Crandall
- Computational Biology Institute, Milken Institute School of Public Health, The George Washington University, Washington, DC 20052, USA
- Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20012, USA
- Department of Biostatistics & Bioinformatics, Milken Institute School of Public Health, The George Washington University, Washington, DC 20052, USA
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Arbuzova NA, Lianguzova AD, Lapshin NE, Laskova EP, Miroliubov AA. Muscular system of Peltogasterella gracilis – A rhizocephalan with the modular type organization of interna. ZOOL ANZ 2022. [DOI: 10.1016/j.jcz.2022.01.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Dreyer N, Tsai PC, Olesen J, Kolbasov GA, Høeg JT, Chan BKK. Independent and adaptive evolution of phenotypic novelties driven by coral symbiosis in barnacle larvae. Evolution 2021; 76:139-157. [PMID: 34705275 DOI: 10.1111/evo.14380] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2021] [Revised: 09/28/2021] [Accepted: 10/02/2021] [Indexed: 11/29/2022]
Abstract
The invasion of novel habitats is recognized as a major promotor of adaptive trait evolution in animals. We tested whether similar ecological niches entail independent and adaptive evolution of key phenotypic structures related to larval host invasion in distantly related taxa. We use disparately related clades of coral barnacles as our model system (Acrothoracica: Berndtia and Thoracica: Pyrgomatidae). We analyze the larval antennular phenotypes and functional morphologies facilitating host invasion. Extensive video recordings show that coral host invasion is carried out exclusively by cypris larvae with spear-shaped antennules. These first exercise a series of complex probing behaviors followed by repeated antennular penetration of the soft host tissues, which subsequently facilitates permanent invasion. Phylogenetic mapping of larval form and function related to niche invasion in 99 species of barnacles (Thecostraca) compellingly shows that the spear-phenotype is uniquely associated with corals and penetrative behaviors. These features evolved independently in the two coral barnacle clades and from ancestors with fundamentally different antennular phenotypes. The larval host invasion system in coral barnacles likely evolved adaptively across millions of years for overcoming challenges associated with invading and entering demanding coral hosts. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Niklas Dreyer
- Department of Life Science, National Taiwan Normal University, Taiwan.,Biodiversity Program, Taiwan International Graduate Program, Academia Sinica, Taipei.,Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan.,Natural History Museum of Denmark, University of Copenhagen, Universitetsparken 15, Kobenhavn, DK-2100, Denmark
| | - Pei-Che Tsai
- Institute of Ecology and Evolutionary Biology, National Taiwan University, Taiwan
| | - Jørgen Olesen
- Natural History Museum of Denmark, University of Copenhagen, Universitetsparken 15, Kobenhavn, DK-2100, Denmark
| | - Gregory A Kolbasov
- White Sea Biological Station, Biological Faculty of Moscow State University, Moscow, 119899, Russia
| | - Jens T Høeg
- Marine Biological Section, Department of Biology, University of Copenhagen, Universitetsparken 4, Kobenhavn, DK-2100, Denmark
| | - Benny K K Chan
- Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan
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Graham AM, Barreto FS. Independent Losses of the Hypoxia-Inducible Factor (HIF) Pathway within Crustacea. Mol Biol Evol 2021; 37:1342-1349. [PMID: 32003807 DOI: 10.1093/molbev/msaa008] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
Abstract
Metazoans respond to hypoxic stress via the hypoxia-inducible factor (HIF) pathway, a mechanism thought to be extremely conserved due to its importance in monitoring cellular oxygen levels and regulating responses to hypoxia. However, recent work revealed that key members of the HIF pathway have been lost in specific lineages (a tardigrade and a copepod), suggesting that this pathway is not as widespread in animals as previously assumed. Using genomic and transcriptomic data from 70 different species across 12 major crustacean groups, we assessed the degree to which the gene HIFα, the master regulator of the HIF pathway, was conserved. Mining of protein domains, followed by phylogenetic analyses of gene families, uncovered group-level losses of HIFα, including one across three orders within Cirripedia, and in three orders within Copepoda. For these groups, additional assessment showed losses of HIF repression machinery (EGLN and VHL). These results suggest the existence of alternative mechanisms for cellular response to low oxygen and highlight these taxa as models useful for probing these evolutionary outcomes.
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Affiliation(s)
- Allie M Graham
- Department of Integrative Biology, Oregon State University, Corvallis, OR
| | - Felipe S Barreto
- Department of Integrative Biology, Oregon State University, Corvallis, OR
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Chan BKK, Dreyer N, Gale AS, Glenner H, Ewers-Saucedo C, Pérez-Losada M, Kolbasov GA, Crandall KA, Høeg JT. The evolutionary diversity of barnacles, with an updated classification of fossil and living forms. Zool J Linn Soc 2021. [DOI: 10.1093/zoolinnean/zlaa160] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Abstract
We present a comprehensive revision and synthesis of the higher-level classification of the barnacles (Crustacea: Thecostraca) to the genus level and including both extant and fossils forms. We provide estimates of the number of species in each group. Our classification scheme has been updated based on insights from recent phylogenetic studies and attempts to adjust the higher-level classifications to represent evolutionary lineages better, while documenting the evolutionary diversity of the barnacles. Except where specifically noted, recognized taxa down to family are argued to be monophyletic from molecular analysis and/or morphological data. Our resulting classification divides the Thecostraca into the subclasses Facetotecta, Ascothoracida and Cirripedia. The whole class now contains 14 orders, 65 families and 367 genera. We estimate that barnacles consist of 2116 species. The taxonomy is accompanied by a discussion of major morphological events in barnacle evolution and justifications for the various rearrangements we propose.
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Affiliation(s)
- Benny K K Chan
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
| | - Niklas Dreyer
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
- Department of Life Science, National Taiwan Normal University, Taipei, Taiwan
- Biodiversity Program, Taiwan International Graduate Program, Academia Sinica, Taipei, Taiwan
- Natural History Museum of Denmark, Invertebrate Zoology, University of Copenhagen, Universitetsparken, Copenhagen, Denmark
| | - Andy S Gale
- School of Earth and Environmental Sciences, University of Portsmouth, Portsmouth, UK
- Department of Earth Sciences, The Natural History Museum, London, UK
| | - Henrik Glenner
- Marine Biodiversity Group, Department of Biology, University of Bergen, Bergen, Norway
- Center for Macroecology, Evolution and Climate, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark
| | | | - Marcos Pérez-Losada
- Computational Biology Institute, Department of Biostatistics and Bioinformatics, George Washington University, Washington, DC, USA
- CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Vairão, Portugal
| | - Gregory A Kolbasov
- White Sea Biological Station, Biological Faculty of Moscow State University, Moscow, Russia
| | - Keith A Crandall
- Computational Biology Institute, Department of Biostatistics and Bioinformatics, George Washington University, Washington, DC, USA
- Department of Invertebrate Zoology, US National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
| | - Jens T Høeg
- Marine Biology Section, Department of Biology, University of Copenhagen, Copenhagen, Denmark
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Yu MC, Dreyer N, Kolbasov GA, Høeg JT, Chan BKK. Sponge symbiosis is facilitated by adaptive evolution of larval sensory and attachment structures in barnacles. Proc Biol Sci 2020; 287:20200300. [PMID: 32396804 PMCID: PMC7287368 DOI: 10.1098/rspb.2020.0300] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
Symbiotic relations and range of host usage are prominent in coral reefs and crucial to the stability of such systems. In order to explain how symbiotic relations are established and evolve, we used sponge-associated barnacles to ask three questions. (1) Does larval settlement on sponge hosts require novel adaptations facilitating symbiosis? (2) How do larvae settle and start life on their hosts? (3) How has this remarkable symbiotic lifestyle involving many barnacle species evolved? We found that the larvae (cyprids) of sponge-associated barnacles show a remarkably high level of interspecific variation compared with other barnacles. We document that variation in larval attachment devices are specifically related to properties of the surface on which they attach and metamorphose. Mapping of the larval and sponge surface features onto a molecular-based phylogeny showed that sponge symbiosis evolved separately at least three times within barnacles, with the same adaptive features being found in all larvae irrespective of phylogenetic relatedness. Furthermore, the metamorphosis of two species proceeded very differently, with one species remaining superficially on the host and developing a set of white calcareous structures, the other embedding itself into the live host tissue almost immediately after settlement. We argue that such a high degree of evolutionary flexibility of barnacle larvae played an important role in the successful evolution of complex symbiotic relationships in both coral reefs and other marine systems.
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Affiliation(s)
- Meng-Chen Yu
- Doctoral Degree Program in Marine Biotechnology, National Sun Yat-sen University and Academia Sinica, Kaohsiung 80424, Taiwan.,Biodiversity Research Center, Academia Sinica, Taipei 11529, Taiwan
| | - Niklas Dreyer
- Biodiversity Research Center, Academia Sinica, Taipei 11529, Taiwan.,Department of Life Science, National Taiwan Normal University, Taipei, Taiwan.,Biodiversity Program, Taiwan International Graduate Program, Academia Sinica, Taipei, Taiwan.,Natural History Museum of Denmark, University of Copenhagen, Universitetsparken 15, DK-2100 Copenhagen, Denmark
| | | | - Jens Thorvald Høeg
- Department of Biology, Marine Biological Section, University of Copenhagen, Universitetsparken 4, DK-2100 Copenhagen, Denmark
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Ewers-Saucedo C, Owen CL, Pérez-Losada M, Høeg JT, Glenner H, Chan BK, Crandall KA. Towards a barnacle tree of life: integrating diverse phylogenetic efforts into a comprehensive hypothesis of thecostracan evolution. PeerJ 2019; 7:e7387. [PMID: 31440430 PMCID: PMC6699479 DOI: 10.7717/peerj.7387] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2018] [Accepted: 07/01/2019] [Indexed: 01/07/2023] Open
Abstract
Barnacles and their allies (Thecostraca) are a biologically diverse, monophyletic crustacean group, which includes both intensely studied taxa, such as the acorn and stalked barnacles, as well as cryptic taxa, for example, Facetotecta. Recent efforts have clarified phylogenetic relationships in many different parts of the barnacle tree, but the outcomes of these phylogenetic studies have not yet been combined into a single hypothesis for all barnacles. In the present study, we applied a new "synthesis" tree approach to estimate the first working Barnacle Tree of Life. Using this approach, we integrated phylogenetic hypotheses from 27 studies, which did not necessarily include the same taxa or used the same characters, with hierarchical taxonomic information for all recognized species. This first synthesis tree contains 2,070 barnacle species and subspecies, including 239 barnacle species with phylogenetic information and 198 undescribed or unidentified species. The tree had 442 bifurcating nodes, indicating that 79.3% of all nodes are still unresolved. We found that the acorn and stalked barnacles, the Thoracica, and the parasitic Rhizocephala have the largest amount of published phylogenetic information. About half of the thecostracan families for which phylogenetic information was available were polyphyletic. We queried publicly available geographic occurrence databases for the group, gaining a sense of geographic gaps and hotspots in our phylogenetic knowledge. Phylogenetic information is especially lacking for deep sea and Arctic taxa, but even coastal species are not fully incorporated into phylogenetic studies.
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Affiliation(s)
| | - Christopher L. Owen
- Systematic Entomology Laboratory, USDA-ARS, Beltsville, MD, USA
- Computational Biology Institute, Milken Institute School of Public Health, George Washington University, Ashburn, VA, USA
| | - Marcos Pérez-Losada
- Computational Biology Institute, Milken Institute School of Public Health, George Washington University, Ashburn, VA, USA
- Department of Invertebrate Zoology, US National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
- CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Vairão, Portugal
| | - Jens T. Høeg
- Marine Biology Section, Department of Biology, University of Copenhagen, Copenhagen, Denmark
| | - Henrik Glenner
- Marine Biodiversity Group, Department of Biology, University of Bergen, Bergen, Norway
| | - Benny K.K. Chan
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
| | - Keith A. Crandall
- Computational Biology Institute, Milken Institute School of Public Health, George Washington University, Ashburn, VA, USA
- Department of Invertebrate Zoology, US National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
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Grygier MJ, Høeg JT, Dreyer N, Olesen J. A new internal structure of nauplius larvae: A “ghostly” support sling for cypris y left within the exuviae of nauplius y after metamorphosis (Crustacea: Thecostraca: Facetotecta). J Morphol 2019; 280:1222-1231. [DOI: 10.1002/jmor.21026] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Revised: 05/04/2019] [Accepted: 06/04/2019] [Indexed: 11/11/2022]
Affiliation(s)
- Mark J. Grygier
- Center of Excellence for the Oceans; National Taiwan Ocean University; Keelung Taiwan, ROC
| | - Jens T. Høeg
- Marine Biology Section, Department of Biology; University of Copenhagen; Copenhagen Ø Denmark
| | - Niklas Dreyer
- Taiwan International Graduate Program; Academia Sinica; Taipei Taiwan, ROC
- Biodiversity Research Center; Academia Sinica; Taipei Taiwan, ROC
- Natural History Museum of Denmark; University of Copenhagen; Copenhagen Ø Denmark
| | - Jørgen Olesen
- Natural History Museum of Denmark; University of Copenhagen; Copenhagen Ø Denmark
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Abstract
Parasitic Crustacea have been present in scientific literature since Linnaeus introduced the first classification system (binomial nomenclature). Crustaceans are considered to be the most morphologically diverse arthropods, with currently 19 parasitic orders known to science. This chapter reviews the history of discovery for each of the major parasitic Crustacea groups, highlighting some of the key developments that have influenced our current understanding of these parasites. Each taxonomic group is briefly introduced, followed by a synopsis on some of the outstanding contributions within that group. Knowledge development is followed, from the first parasites discovered to other historical highlights that influenced the groups up to this point. Other important discoveries (both taxonomic and ecological) are also noted, serving as a preview to the host-parasite interactions covered in the subsequent chapters. Additionally, several researchers who have added significant contributions to our knowledge of the parasitic Crustacea (specifically in taxonomy and discovery) are introduced, along with photographs of a select few. This historical review of the crustacean parasites provides a background to these diverse and abundant organisms and will contribute to a better understanding of their unique niche in the aquatic environment.
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Affiliation(s)
- Nico J. Smit
- North-West University, and Unit for Environmental Sciences and Management , Potchefstroom, Northwest South Africa
| | - Niel L. Bruce
- Biodiversity & Geosciences Program, Queensland Museum, South Brisbane BC, Queensland 4101, Australia, and Water Research Group, Unit for Environmental Sciences and Management, North-West University, Potchefstroom, South Africa
| | - Kerry A. Hadfield
- Water Research Group, Unit for Environmental Sciences and Management, North-West University, Potchefstroom, South Africa
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Høeg JT, Rees DJ, Jensen PC, Glenner H. Unravelling the Evolutions of the Rhizocephala: A Case Study for Molecular-Based Phylogeny in the Parasitic Crustacea. PARASITIC CRUSTACEA 2019. [DOI: 10.1007/978-3-030-17385-2_9] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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15
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Anatomy of the Tantulocarida: first results obtained using TEM and CLSM. Part I: tantulus larva. ORG DIVERS EVOL 2018. [DOI: 10.1007/s13127-018-0376-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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16
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Lamont EI, Emlet RB. Permanently Fused Setules Create Unusual Folding Fans Used for Swimming in Cyprid Larvae of Barnacles. THE BIOLOGICAL BULLETIN 2018; 235:185-194. [PMID: 30624117 DOI: 10.1086/700084] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Many crustacean swimming appendages carry arrays of plumose setae-exoskeletal, feather-like structures of long bristles (setae) with short branches (setules) distributed along two sides. Although closely spaced, setae are not physically interconnected. Setal arrays function during swimming as drag-based leaky paddles that push the organism through water. Barnacle cyprids, the final, non-feeding larval stage, swim with six pairs of legs (thoracopods) that open and close setal arrays in alternating high-drag power strokes and low-drag recovery strokes. While studying cyprid swimming, we found that their thoracopods contained setae permanently cross-linked by fused setules. These cuticular connections would seem highly unlikely because setae are individually produced exoskeletal secretions, and the connections imply unknown processes for the production or modification of crustacean setae. We describe the morphology and function of plumose setae on cyprids of Balanus glandula and other species across the clade Cirripedia. Setules from adjacent plumose setae are seamlessly joined at their tips and occur in three distinct linkage patterns. Thoracopods lack muscles to open and close the array; interconnected setae are instead pulled apart, producing a paddle-like fan with high drag when appendages spread laterally during power strokes. Setules are spring-like, passively closing setae into tight bundles with low drag during recovery strokes. The linked setules occur in the three main clades of the Cirripedia. This cuticular arrangement is effective in swimming, may eliminate the need for muscles to close the setal array, and may represent a unique swimming structure within the Crustacea.
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Lin HC, Kobasov GA, Chan BK. Phylogenetic relationships of Darwin’s “Mr. Arthrobalanus”: The burrowing barnacles (Cirripedia: Acrothoracica). Mol Phylogenet Evol 2016; 100:292-302. [DOI: 10.1016/j.ympev.2016.03.016] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2015] [Revised: 03/06/2016] [Accepted: 03/13/2016] [Indexed: 11/26/2022]
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18
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Affiliation(s)
- Guadalupe Peralta
- Instituto Argentino de Investigaciones de las Zonas Áridas CONICET CC 507 5500 Mendoza Argentina
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19
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Perina A, von Reumont BM, Martínez-Lage A, González-Tizón AM. Accessing transcriptomic data for ecologically important genes in the goose barnacle (Pollicipes pollicipes), with particular focus on cement proteins. Mar Genomics 2014; 15:9-11. [PMID: 24606915 DOI: 10.1016/j.margen.2014.02.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2013] [Revised: 02/19/2014] [Accepted: 02/19/2014] [Indexed: 11/24/2022]
Abstract
In this study 4310 expressed sequence tags (ESTs) were used to identify potentially useful transcripts for future studies in the gooseneck barnacle Pollicipes pollicipes (Gmelin, 1789). 119 ESTs were obtained in this work and 4191 were taken from Meusemann et al. (2010). The gooseneck barnacle is a sessile pedunculate cirripede of great economic importance that occurs in dense aggregations, and is harvested for human consumption. The assembly of these ESTs yielded 1805 unigenes (461 contigs and 1344 singlets). The identification of cement proteins in our data is particularly interesting for cirripedes. Only a small part of the assembled unigenes could be functionally annotated. However, our results greatly improve our understanding of the biological features of P. pollicipes. In addition to this, a large number of potentially interesting genes were identified in order to serve as the base for future evolutionary studies in P. pollicipes.
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Affiliation(s)
- A Perina
- Department of Cell and Molecular Biology, Evolutionary Biology Group (GIBE), Universidade da Coruña, A Fraga 10, E-15008 A Coruña, Spain
| | - B M von Reumont
- Department of Life Sciences, The Natural History Museum, London, United Kingdom
| | - A Martínez-Lage
- Department of Cell and Molecular Biology, Evolutionary Biology Group (GIBE), Universidade da Coruña, A Fraga 10, E-15008 A Coruña, Spain
| | - A M González-Tizón
- Department of Cell and Molecular Biology, Evolutionary Biology Group (GIBE), Universidade da Coruña, A Fraga 10, E-15008 A Coruña, Spain.
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20
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Petrunina AS, Neretina TV, Mugue NS, Kolbasov GA. Tantulocarida versus Thecostraca: inside or outside? First attempts to resolve phylogenetic position of Tantulocarida using gene sequences. J ZOOL SYST EVOL RES 2013. [DOI: 10.1111/jzs.12045] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
| | - Tatyana V. Neretina
- Pertsov White Sea Biological Station; Lomonosov Moscow State University; Moscow Russia
| | - Nikolay S. Mugue
- Russian Federal Research Institute of Fisheries & Oceanography (VNIRO); Moscow Russia
| | - Gregory A. Kolbasov
- Pertsov White Sea Biological Station; Lomonosov Moscow State University; Moscow Russia
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21
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Breinholt JW, Porter ML, Crandall KA. Testing phylogenetic hypotheses of the subgenera of the freshwater crayfish genus Cambarus (Decapoda: Cambaridae). PLoS One 2012; 7:e46105. [PMID: 23049950 PMCID: PMC3458831 DOI: 10.1371/journal.pone.0046105] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2012] [Accepted: 08/29/2012] [Indexed: 11/19/2022] Open
Abstract
Background The genus Cambarus is one of three most species rich crayfish genera in the Northern Hemisphere. The genus has its center of diversity in the Southern Appalachians of the United States and has been divided into 12 subgenera. Using Cambarus we test the correspondence of subgeneric designations based on morphology used in traditional crayfish taxonomy to the underlying evolutionary history for these crayfish. We further test for significant correlation and explanatory power of geographic distance, taxonomic model, and a habitat model to estimated phylogenetic distance with multiple variable regression. Methodology/Principal Findings We use three mitochondrial and one nuclear gene regions to estimate the phylogenetic relationships for species within the genus Cambarus and test evolutionary hypotheses of relationships and associated morphological and biogeographical hypotheses. Our resulting phylogeny indicates that the genus Cambarus is polyphyletic, however we fail to reject the monophyly of Cambarus with a topology test. The majority of the Cambarus subgenera are rejected as monophyletic, suggesting the morphological characters used to define those taxa are subject to convergent evolution. While we found incongruence between taxonomy and estimated phylogenetic relationships, a multiple model regression analysis indicates that taxonomy had more explanatory power of genetic relationships than either habitat or geographic distance. Conclusions We find convergent evolution has impacted the morphological features used to delimit Cambarus subgenera. Studies of the crayfish genus Orconectes have shown gonopod morphology used to delimit subgenera is also affected by convergent evolution. This suggests that morphological diagnoses based on traditional crayfish taxonomy might be confounded by convergent evolution across the cambarids and has little utility in diagnosing relationships or defining natural groups. We further suggest that convergent morphological evolution appears to be a common occurrence in invertebrates suggesting the need for careful phylogenetically based interpretations of morphological evolution in invertebrate systematics.
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22
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Perez-Losada M, Hoeg JT, Crandall KA. Deep Phylogeny and Character Evolution in Thecostraca (Crustacea: Maxillopoda). Integr Comp Biol 2012; 52:430-42. [DOI: 10.1093/icb/ics051] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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23
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Falk BG, Mahler DL, Perkins SL. Tree-based delimitation of morphologically ambiguous taxa: a study of the lizard malaria parasites on the Caribbean island of Hispaniola. Int J Parasitol 2011; 41:967-80. [PMID: 21718698 DOI: 10.1016/j.ijpara.2011.05.004] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2011] [Revised: 05/01/2011] [Accepted: 05/05/2011] [Indexed: 11/29/2022]
Abstract
Malaria parasites in the genus Plasmodium have been classified primarily on the basis of differences in morphology. These single-celled organisms often lack distinguishing morphological features, and this can encumber both species delimitation and identification. Six saurian malaria parasites have been described from the Caribbean island of Hispaniola. All six infect lizards in the genus Anolis, but only two of these parasites can be distinguished using morphology. The remaining four species overlap in morphology and geography, and cannot be consistently identified using traditional methods. We compared a morphological approach with a molecular phylogenetic approach for assessing the taxonomy of these parasites. We surveyed for blood parasites from 677 Anolis lizards, representing 26 Anolis spp. from a total of 52 sites across Hispaniola. Fifty-five of these lizards were infected with Plasmodium spp., representing several new host records, but only 24 of these infections could be matched to previously described species using traditional morphological criteria. We then estimated the phylogeny of these parasites using both mitochondrial (cytb and coxI) and nuclear (EF2) genes, and included carefully selected GenBank sequences to confirm identities for certain species. Our molecular results unambiguously corroborated our morphology-based species identifications for only the two species previously judged to be morphologically distinctive. The remaining infections fell into two well-supported and reciprocally monophyletic clades, which contained the morphological variation previously reported for all four of the morphologically ambiguous species. One of these clades was identified as Plasmodium floridense and the other as Plasmodium fairchildi hispaniolae. We elevate the latter to Plasmodium hispaniolae comb. nov. because it is polyphyletic with the mainland species Plasmodium fairchildifairchildi and we contribute additional morphological and molecular characters for future species delimitation. Our phylogenetic hypotheses indicate that two currently recognised taxa, Plasmodium minasense anolisi and Plasmodium tropiduri caribbense, are not valid on Hispaniola. These results illustrate that molecular data can improve taxonomic hypotheses in Plasmodium when reliable morphological characters are lacking.
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Affiliation(s)
- Bryan G Falk
- Richard Gilder Graduate School, Division of Invertebrate Zoology and Sackler Institute for Comparative Genomics, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USA.
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Jenner RA. Higher-level crustacean phylogeny: consensus and conflicting hypotheses. ARTHROPOD STRUCTURE & DEVELOPMENT 2010; 39:143-153. [PMID: 19944189 DOI: 10.1016/j.asd.2009.11.001] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2009] [Revised: 11/18/2009] [Accepted: 11/18/2009] [Indexed: 05/28/2023]
Abstract
This paper presents an overview of current hypotheses of higher-level crustacean phylogeny in order to assist and help focus further research. It concentrates on hypotheses proposed or debated in the recent literature based on morphological, molecular and combined evidence phylogenetic analyses. It can be concluded that crustacean phylogeny remains essentially unresolved. Conflict is rife, irrespective of whether one compares different morphological studies, molecular studies, or both. Using the number of recently proposed alternative sister group hypotheses for each of the major tetraconatan taxa as a rough estimate of phylogenetic uncertainty, it can be concluded that the phylogenetic position of Malacostraca remains the most problematic, closely followed by Branchiopoda, Cephalocarida, Remipedia, Ostracoda, Branchiura, Copepoda and Hexapoda. Future progress will depend upon a broader taxon sampling in molecular analyses, and the further exploration of new molecular phylogenetic markers. However, the need for continued revision and expansion of morphological datasets remains undiminished given the conspicuous lack of agreement between molecules and morphology for positioning several taxa. In view of the unparalleled morphological diversity of Crustacea, and the likely nesting of Hexapoda somewhere within Crustacea, working out a detailed phylogeny of Tetraconata is a crucial step towards understanding arthropod body plan evolution.
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Affiliation(s)
- Ronald A Jenner
- Department of Zoology, The Natural History Museum, Cromwell Road, London, UK.
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Abstract
The evolution and loss of distinctive larval forms in animal life cycles have produced complex patterns of similarity and difference among life-history stages and major animal lineages. One example of this similarity is the morphological forms of Onychophora (velvet worms) and the caterpillar-like larvae of some insects. Williamson [(2009) Proc Natl Acad Sci USA 106:15786-15790] has made the astonishing and unfounded claim that the ancestors of the velvet worms directly gave rise to insect caterpillars via hybridization and that evidence of this ancient "larval transfer" could be found in comparisons among the genomes of extant onychophorans, insects with larvae, and insects without larvae. Williamson has made a series of predictions arising from his hypothesis and urged genomicists to test them. Here, we use data already in the literature to show these predictions to be false. Hybridogenesis between distantly related animals does not explain patterns of morphological and life-history evolution in general, and the genes and genomes of animals provide strong evidence against hybridization or larval transfer between a velvet worm and an insect in particular.
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Abstract
Charles Darwin's favorite animals were cirripedes (barnacles). Indeed, he worked intensively on cirripedes during the years he was maturing his thoughts regarding his theory, which eventually led to the publication of The Origin of Species. Here I present some of Darwin's achievements in the morphology, systematics and biology of these small marine invertebrates, and also, in light of our present knowledge, some mistakes he made.
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Affiliation(s)
- Jean S Deutsch
- UMR 7622 Developmental Biology, Pierre and Marie Curie University (Paris 6), Paris, France.
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