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For: Kolder ICRM, van der Plas-Duivesteijn SJ, Tan G, Wiegertjes GF, Forlenza M, Guler AT, Travin DY, Nakao M, Moritomo T, Irnazarow I, den Dunnen JT, Anvar SY, Jansen HJ, Dirks RP, Palmblad M, Lenhard B, Henkel CV, Spaink HP. A full-body transcriptome and proteome resource for the European common carp. BMC Genomics 2016;17:701. [PMID: 27590662 PMCID: PMC5009708 DOI: 10.1186/s12864-016-3038-y] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2016] [Accepted: 08/24/2016] [Indexed: 12/01/2022]  Open
Number Cited by Other Article(s)
1
Wiśniewska MM, Kyslík J, Alama-Bermejo G, Lövy A, Kolísko M, Holzer AS, Kosakyan A. Comparative transcriptomics reveal stage-dependent parasitic adaptations in the myxozoan Sphaerospora molnari. BMC Genomics 2025;26:103. [PMID: 39901063 PMCID: PMC11792419 DOI: 10.1186/s12864-025-11265-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Accepted: 01/20/2025] [Indexed: 02/05/2025]  Open
2
Eltijani A, Embregts CWE, Magadan S, Wang J, Brugman S, Boudinot P, Wiegertjes GF, Forlenza M. Distinct distribution and responses of IgM+, IgT1+ and IgT2+ B cells in common carp. Front Immunol 2024;15:1490776. [PMID: 39588374 PMCID: PMC11586371 DOI: 10.3389/fimmu.2024.1490776] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2024] [Accepted: 10/24/2024] [Indexed: 11/27/2024]  Open
3
Rasal KD, Kumar PV, Risha S, Asgolkar P, Harshavarthini M, Acharya A, Shinde S, Dhere S, Rasal A, Sonwane A, Brahmane M, Sundaray JK, Nagpure N. Genetic improvement and genomic resources of important cyprinid species: status and future perspectives for sustainable production. Front Genet 2024;15:1398084. [PMID: 39364006 PMCID: PMC11446788 DOI: 10.3389/fgene.2024.1398084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2024] [Accepted: 09/02/2024] [Indexed: 10/05/2024]  Open
4
Zhang Y, Zhang J, Fan H, Lu R, Nie G. Database construction and comparative genomics analysis of genes involved in nutritional metabolic diseases in fish. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY. PART D, GENOMICS & PROTEOMICS 2024;50:101241. [PMID: 38733902 DOI: 10.1016/j.cbd.2024.101241] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2024] [Revised: 04/24/2024] [Accepted: 05/04/2024] [Indexed: 05/13/2024]
5
Okano M, Miyamae J, Sakurai K, Yamaguchi T, Uehara R, Katakura F, Moritomo T. Subgenomic T cell receptor alpha and delta (TRA/TRD) loci in common carp. FISH & SHELLFISH IMMUNOLOGY 2024;146:109421. [PMID: 38325591 DOI: 10.1016/j.fsi.2024.109421] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 01/10/2024] [Accepted: 01/30/2024] [Indexed: 02/09/2024]
6
Kapitunova AI, Dominova IN, Zhukov VV. γM Crystallin Genes in the Eye Lens of a Juvenile Common Carp Cyprinus carpio: Transcription Levels and Phylogenetic Aspect. J EVOL BIOCHEM PHYS+ 2022. [DOI: 10.1134/s0022093022040081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
7
Petit J, Wiegertjes GF. Conservation of members of the free fatty acid receptor gene family in common carp. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY 2022;126:104240. [PMID: 34461159 DOI: 10.1016/j.dci.2021.104240] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Revised: 08/20/2021] [Accepted: 08/20/2021] [Indexed: 06/13/2023]
8
Nissa MU, Pinto N, Mukherjee A, Reddy PJ, Ghosh B, Sun Z, Ghantasala S, Chetanya C, Shenoy SV, Moritz RL, Goswami M, Srivastava S. Organ-Based Proteome and Post-Translational Modification Profiling of a Widely Cultivated Tropical Water Fish, Labeo rohita. J Proteome Res 2021;21:420-437. [PMID: 34962809 DOI: 10.1021/acs.jproteome.1c00759] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
9
Lu Z, Tang M, Zhang M, Li Y, Shi F, Zhan F, Zhao L, Li J, Lin L, Qin Z. Expression and functional analysis of the BCL2-Associated agonist of cell death (BAD) gene in grass carp (Ctenopharyngodon idella) during bacterial infection. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY 2021;123:104160. [PMID: 34087289 DOI: 10.1016/j.dci.2021.104160] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2021] [Revised: 05/27/2021] [Accepted: 05/29/2021] [Indexed: 06/12/2023]
10
Li JT, Wang Q, Huang Yang MD, Li QS, Cui MS, Dong ZJ, Wang HW, Yu JH, Zhao YJ, Yang CR, Wang YX, Sun XQ, Zhang Y, Zhao R, Jia ZY, Wang XY. Parallel subgenome structure and divergent expression evolution of allo-tetraploid common carp and goldfish. Nat Genet 2021;53:1493-1503. [PMID: 34594040 PMCID: PMC8492472 DOI: 10.1038/s41588-021-00933-9] [Citation(s) in RCA: 55] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2020] [Accepted: 08/05/2021] [Indexed: 02/08/2023]
11
Szczygieł J, Kamińska-Gibas T, Petit J, Jurecka P, Wiegertjes G, Irnazarow I. Re-evaluation of common carp (Cyprinus carpio L.) housekeeping genes for gene expression studies - considering duplicated genes. FISH & SHELLFISH IMMUNOLOGY 2021;115:58-69. [PMID: 34033909 DOI: 10.1016/j.fsi.2021.05.013] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Revised: 05/10/2021] [Accepted: 05/17/2021] [Indexed: 06/12/2023]
12
Yan X, Wang J, Li H, Gao L, Geng J, Ma Z, Liu J, Zhang J, Xie P, Chen L. Combined transcriptome and proteome analyses reveal differences in the longissimus dorsi muscle between Kazakh cattle and Xinjiang brown cattle. Anim Biosci 2021;34:1439-1450. [PMID: 33677919 PMCID: PMC8495333 DOI: 10.5713/ab.20.0751] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2020] [Accepted: 01/29/2021] [Indexed: 01/09/2023]  Open
13
Wentzel AS, Petit J, van Veen WG, Fink IR, Scheer MH, Piazzon MC, Forlenza M, Spaink HP, Wiegertjes GF. Transcriptome sequencing supports a conservation of macrophage polarization in fish. Sci Rep 2020;10:13470. [PMID: 32778701 PMCID: PMC7418020 DOI: 10.1038/s41598-020-70248-y] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Accepted: 07/21/2020] [Indexed: 12/12/2022]  Open
14
Wentzel AS, Janssen JJE, de Boer VCJ, van Veen WG, Forlenza M, Wiegertjes GF. Fish Macrophages Show Distinct Metabolic Signatures Upon Polarization. Front Immunol 2020;11:152. [PMID: 32158446 PMCID: PMC7052297 DOI: 10.3389/fimmu.2020.00152] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2019] [Accepted: 01/21/2020] [Indexed: 01/09/2023]  Open
15
Tadmor-Levi R, Doron-Faigenboim A, Marcos-Hadad E, Petit J, Hulata G, Forlenza M, Wiegertjes GF, David L. Different transcriptional response between susceptible and resistant common carp (Cyprinus carpio) fish hints on the mechanism of CyHV-3 disease resistance. BMC Genomics 2019;20:1019. [PMID: 31878870 PMCID: PMC6933926 DOI: 10.1186/s12864-019-6391-9] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2019] [Accepted: 12/12/2019] [Indexed: 02/08/2023]  Open
16
Swaleh SB, Banday UZ, Usmani N. Comparative study of biochemical, histological and molecular biomarkers of heavy metal contamination in Cyprinus carpio collected from warm-monomictic lake and government culture pond. CHEMOSPHERE 2019;236:124182. [PMID: 31307788 DOI: 10.1016/j.chemosphere.2019.06.152] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2019] [Revised: 06/19/2019] [Accepted: 06/20/2019] [Indexed: 06/10/2023]
17
Tan G, Polychronopoulos D, Lenhard B. CNEr: A toolkit for exploring extreme noncoding conservation. PLoS Comput Biol 2019;15:e1006940. [PMID: 31449516 PMCID: PMC6730951 DOI: 10.1371/journal.pcbi.1006940] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2019] [Revised: 09/06/2019] [Accepted: 06/25/2019] [Indexed: 12/18/2022]  Open
18
Multiple interacting QTLs affect disease challenge survival in common carp (Cyprinus carpio). Heredity (Edinb) 2019;123:565-578. [PMID: 31036952 DOI: 10.1038/s41437-019-0224-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2018] [Revised: 03/20/2019] [Accepted: 04/12/2019] [Indexed: 11/08/2022]  Open
19
Petit J, Bailey EC, Wheeler RT, de Oliveira CAF, Forlenza M, Wiegertjes GF. Studies Into β-Glucan Recognition in Fish Suggests a Key Role for the C-Type Lectin Pathway. Front Immunol 2019;10:280. [PMID: 30863400 PMCID: PMC6400144 DOI: 10.3389/fimmu.2019.00280] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2018] [Accepted: 02/01/2019] [Indexed: 11/17/2022]  Open
20
Katakura F, Nishiya K, Wentzel AS, Hino E, Miyamae J, Okano M, Wiegertjes GF, Moritomo T. Paralogs of Common Carp Granulocyte Colony-Stimulating Factor (G-CSF) Have Different Functions Regarding Development, Trafficking and Activation of Neutrophils. Front Immunol 2019;10:255. [PMID: 30837998 PMCID: PMC6389648 DOI: 10.3389/fimmu.2019.00255] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2018] [Accepted: 01/29/2019] [Indexed: 01/08/2023]  Open
21
Maekawa S, Wang PC, Chen SC. Comparative Study of Immune Reaction Against Bacterial Infection From Transcriptome Analysis. Front Immunol 2019;10:153. [PMID: 30804945 PMCID: PMC6370674 DOI: 10.3389/fimmu.2019.00153] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2018] [Accepted: 01/17/2019] [Indexed: 12/28/2022]  Open
22
Saleh M, Kumar G, Abdel-Baki AAS, Dkhil MA, El-Matbouli M, Al-Quraishy S. Quantitative proteomic profiling of immune responses to Ichthyophthirius multifiliis in common carp skin mucus. FISH & SHELLFISH IMMUNOLOGY 2019;84:834-842. [PMID: 30385245 DOI: 10.1016/j.fsi.2018.10.078] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2018] [Revised: 10/23/2018] [Accepted: 10/28/2018] [Indexed: 06/08/2023]
23
Shevchenko A, Schuhmann A, Thomas H, Wetzel G. Fine Endmesolithic fish caviar meal discovered by proteomics in foodcrusts from archaeological site Friesack 4 (Brandenburg, Germany). PLoS One 2018;13:e0206483. [PMID: 30485287 PMCID: PMC6261446 DOI: 10.1371/journal.pone.0206483] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2018] [Accepted: 10/12/2018] [Indexed: 01/19/2023]  Open
24
Zhang C, Su S, Li X, Li B, Yang B, Zhu J, Wang W. Comparative transcriptomics identifies genes differentially expressed in the intestine of a new fast-growing strain of common carp with higher unsaturated fatty acid content in muscle. PLoS One 2018;13:e0206615. [PMID: 30395585 PMCID: PMC6218049 DOI: 10.1371/journal.pone.0206615] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2018] [Accepted: 10/16/2018] [Indexed: 01/01/2023]  Open
25
Chen L, Peng W, Kong S, Pu F, Chen B, Zhou Z, Feng J, Li X, Xu P. Genetic Mapping of Head Size Related Traits in Common Carp (Cyprinus carpio). Front Genet 2018;9:448. [PMID: 30356829 PMCID: PMC6190898 DOI: 10.3389/fgene.2018.00448] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2017] [Accepted: 09/18/2018] [Indexed: 12/23/2022]  Open
26
Travin D, Popov I, Guler AT, Medvedev D, van der Plas-Duivesteijn S, Varela M, Kolder ICRM, Meijer AH, Spaink HP, Palmblad M. COMICS: Cartoon Visualization of Omics Data in Spatial Context Using Anatomical Ontologies. J Proteome Res 2018;17:739-744. [PMID: 29083911 PMCID: PMC5772887 DOI: 10.1021/acs.jproteome.7b00615] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
27
Petit J, David L, Dirks R, Wiegertjes GF. Genomic and transcriptomic approaches to study immunology in cyprinids: What is next? DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY 2017;75:48-62. [PMID: 28257855 DOI: 10.1016/j.dci.2017.02.022] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2017] [Revised: 02/24/2017] [Accepted: 02/26/2017] [Indexed: 06/06/2023]
28
Oomen RA, Hutchings JA. Transcriptomic responses to environmental change in fishes: Insights from RNA sequencing. Facets (Ott) 2017. [DOI: 10.1139/facets-2017-0015] [Citation(s) in RCA: 44] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
29
A Comparative Study on Antioxidant System in Fish Hepatopancreas and Intestine Affected by Choline Deficiency: Different Change Patterns of Varied Antioxidant Enzyme Genes and Nrf2 Signaling Factors. PLoS One 2017;12:e0169888. [PMID: 28099509 PMCID: PMC5242466 DOI: 10.1371/journal.pone.0169888] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2016] [Accepted: 12/22/2016] [Indexed: 01/24/2023]  Open
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