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Sharma SS, Pandey A, Kashyap A, Goyal L, Garg P, Kushwaha R, Sharma J, Tripathi S, Kumari S, Thomas G, Verma M, Gupta NC, Gupta AK, Bhattacharya R, Sharma S, Rao M. CRISPR/Cas9: efficient and emerging scope for Brassica crop improvement. PLANTA 2025; 262:14. [PMID: 40464976 DOI: 10.1007/s00425-025-04727-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2025] [Accepted: 05/13/2025] [Indexed: 06/19/2025]
Abstract
MAIN CONCLUSION CRISPR/Cas9 revolutionizes Brassica crop improvement by enhancing yield, quality, and stress resistance, providing a precise and versatile tool for genetic and agronomic advancements. The rapidly advancing CRISPR/Cas9 (Clustered regularly interspaced short palindromic repeats/CRISPR associated protein 9) technologies are being employed in both diploid and polyploid species of Brassica for gene functions and precise genetic improvements. CRISPR/Cas technology has sparked significant attention among the scientific community due to its affordability, precision, and effectiveness compared to other genome editing techniques. The recent discoveries highlight the diverse applications of the CRISPR/Cas9 genome editing tool in enhancing agriculturally important traits in Brassica species. This technology has been utilized to improve yield, quality, and resistance to both biotic and abiotic stresses globally. Here, we present an overview that encourages researchers to explore and improve the functionality and genetic progress of Brassica U-triangle species utilizing genome editing technologies. In addition, ethical considerations and concerns associated with CRISPR technologies are addressed, providing valuable insight into how CRISPR/Cas9 tools and have revolutionized crop improvement with special emphasis on Brassica for various agronomically and nutritionally important traits.
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Affiliation(s)
- Shiv Shankar Sharma
- ICAR- National Institute for Plant Biotechnology, Pusa campus, New Delhi, 110012, India
- School of Biotechnology, Institute of Science, Banaras Hindu University, Varanasi, 221005, Uttar Pradesh, India
| | - Ashwani Pandey
- ICAR- National Institute for Plant Biotechnology, Pusa campus, New Delhi, 110012, India
- ICFRE- Forest Research Institute, Dehradun, 248195, Uttarakhand, India
| | - Anamika Kashyap
- ICAR- National Institute for Plant Biotechnology, Pusa campus, New Delhi, 110012, India
- Veer Chandra Singh Garhwali Uttarakhand University of Horticulture and Forestry, Bharsar, Pauri Garhwal, 246123, Uttarakhand, India
| | - Lakshay Goyal
- ICAR- National Institute for Plant Biotechnology, Pusa campus, New Delhi, 110012, India
| | - Pooja Garg
- ICAR- National Institute for Plant Biotechnology, Pusa campus, New Delhi, 110012, India
| | - Ranjeet Kushwaha
- ICAR- National Institute for Plant Biotechnology, Pusa campus, New Delhi, 110012, India
| | - Jyoti Sharma
- ICAR- National Institute for Plant Biotechnology, Pusa campus, New Delhi, 110012, India
| | - Shikha Tripathi
- ICAR- National Institute for Plant Biotechnology, Pusa campus, New Delhi, 110012, India
| | - Sujata Kumari
- ICAR- National Institute for Plant Biotechnology, Pusa campus, New Delhi, 110012, India
| | - George Thomas
- Department of Molecular and Cellular Engineering, Jacob Institute of Biotechnology and Bioengineering, Sam Higginbottom University of Agriculture, Technology and Sciences, Prayagraj, 211007, Uttar Pradesh, India
| | - Malkhey Verma
- School of Biotechnology, Institute of Science, Banaras Hindu University, Varanasi, 221005, Uttar Pradesh, India
| | - Navin C Gupta
- ICAR- National Institute for Plant Biotechnology, Pusa campus, New Delhi, 110012, India
| | - Ashish Kumar Gupta
- ICAR- National Institute for Plant Biotechnology, Pusa campus, New Delhi, 110012, India
| | - Ramcharan Bhattacharya
- ICAR- National Institute for Plant Biotechnology, Pusa campus, New Delhi, 110012, India.
| | - Sandhya Sharma
- ICAR- National Institute for Plant Biotechnology, Pusa campus, New Delhi, 110012, India.
| | - Mahesh Rao
- ICAR- National Institute for Plant Biotechnology, Pusa campus, New Delhi, 110012, India.
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Wang P, Si H, Li C, Xu Z, Guo H, Jin S, Cheng H. Plant genetic transformation: achievements, current status and future prospects. PLANT BIOTECHNOLOGY JOURNAL 2025; 23:2034-2058. [PMID: 40052992 PMCID: PMC12120897 DOI: 10.1111/pbi.70028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/18/2024] [Revised: 01/25/2025] [Accepted: 02/15/2025] [Indexed: 05/31/2025]
Abstract
Regeneration represents a fundamental biological process wherein an organism's tissues or organs repair and replace themselves following damage or environmental stress. In plant systems, injured tree branches can regenerate adventitious buds and develop new crowns through propagation techniques like cuttings and canopy pruning, while transgenic plants emerge via tissue culture in genetic engineering processes intimately connected to plant regeneration mechanisms. The advancement of plant regeneration technology is critical for addressing complex and dynamic climate challenges, ultimately ensuring global agricultural sustainability. This review comprehensively synthesizes the latest genetic transformation technologies, including transformation systems across woody, herbaceous and algal species, organellar genetic modifications, crucial regeneration factors facilitating Agrobacterium-mediated transformations, the intricate hormonal networks regulating plant regeneration, comparative analyses of transient transformation approaches and marker gene dynamics throughout transformation processes. Ultimately, the review offers novel perspectives on current transformation bottlenecks and proposes future research trajectories.
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Affiliation(s)
- Peilin Wang
- Academician Workstation, National Nanfan Research InstituteChinese Academy of Agricultural SciencesSanyaChina
- Biotechnology Research Institute/Key Laboratory of Agricultural Microbiome (MARA)Chinese Academy of Agricultural SciencesBeijingChina
| | - Huan Si
- Tobacco Research InstituteChinese Academy of Agricultural SciencesQingdaoChina
| | - Chenhui Li
- Academician Workstation, National Nanfan Research InstituteChinese Academy of Agricultural SciencesSanyaChina
- Biotechnology Research Institute/Key Laboratory of Agricultural Microbiome (MARA)Chinese Academy of Agricultural SciencesBeijingChina
| | - Zhongping Xu
- Hubei Hongshan Laboratory, National Key Laboratory of Crop Genetic ImprovementHuazhong Agricultural UniversityWuhanChina
| | - Huiming Guo
- Academician Workstation, National Nanfan Research InstituteChinese Academy of Agricultural SciencesSanyaChina
- Biotechnology Research Institute/Key Laboratory of Agricultural Microbiome (MARA)Chinese Academy of Agricultural SciencesBeijingChina
| | - Shuangxia Jin
- Hubei Hongshan Laboratory, National Key Laboratory of Crop Genetic ImprovementHuazhong Agricultural UniversityWuhanChina
| | - Hongmei Cheng
- Academician Workstation, National Nanfan Research InstituteChinese Academy of Agricultural SciencesSanyaChina
- Biotechnology Research Institute/Key Laboratory of Agricultural Microbiome (MARA)Chinese Academy of Agricultural SciencesBeijingChina
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3
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Li XX, Gao YH, Ma HW, Wang YQ, Bu T, Yin W, Xia X, Wang HL. Non-tissue culture genetic modifications for plant improvement. PLANT MOLECULAR BIOLOGY 2025; 115:67. [PMID: 40377725 DOI: 10.1007/s11103-025-01594-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2025] [Accepted: 05/04/2025] [Indexed: 05/18/2025]
Abstract
Gene delivery systems are essential for investigating gene regulation mechanisms and enhancing the genetic improvement of functional traits in plants. However, fewer than 0.1% of higher plant species on Earth can be genetically modified. Even for these species, the genetic modification process relies on complex tissue culture methods, which are time-consuming, costly, and often require specialized technical skills. Additionally, the efficiency of genetic modification is extremely low in some species. Notably, over the past five years, significant progress has been made in establishing non-tissue culture genetic modification systems. This advancement effectively resolved a series of previously mentioned challenges and innovated in biotechnology for the improvement of many valuable plant species. This review summarizes the research advancements in non-tissue culture genetic modification technologies and presents examples of successful species modified using various methods, including fast-treated Agrobacterium co-culture (Fast-TrACC), cut-dip-budding (CDB), particle bombardment, and nano-mediated delivery systems. Additionally, we propose a working guideline to classify, analyze, evaluate, and select non-tissue culture genetic modification systems for plant species of interest. Our review also discusses the potential for enhancing plant regeneration capacity, improving genetic modification efficiency, and the future application prospects for plant improvement.
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Affiliation(s)
- Xin-Xin Li
- State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, People's Republic of China
| | - Yue-Hao Gao
- State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, People's Republic of China
| | - Hao-Wen Ma
- State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, People's Republic of China
| | - Yu-Qiong Wang
- State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, People's Republic of China
| | - Tian Bu
- State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, People's Republic of China
| | - Weilun Yin
- State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, People's Republic of China
| | - Xinli Xia
- State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, People's Republic of China
| | - Hou-Ling Wang
- State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, People's Republic of China.
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4
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Roeder AHK, Bent A, Lovell JT, McKay JK, Bravo A, Medina-Jimenez K, Morimoto KW, Brady SM, Hua L, Hibberd JM, Zhong S, Cardinale F, Visentin I, Lovisolo C, Hannah MA, Webb AAR. Lost in translation: What we have learned from attributes that do not translate from Arabidopsis to other plants. THE PLANT CELL 2025; 37:koaf036. [PMID: 40371945 PMCID: PMC12079428 DOI: 10.1093/plcell/koaf036] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/18/2025] [Accepted: 01/26/2025] [Indexed: 05/16/2025]
Abstract
Research in Arabidopsis thaliana has a powerful influence on our understanding of gene functions and pathways. However, not everything translates from Arabidopsis to crops and other plants. Here, a group of experts consider instances where translation has been lost and why such translation is not possible or is challenging. First, despite great efforts, floral dip transformation has not succeeded in other species outside Brassicaceae. Second, due to gene duplications and losses throughout evolution, it can be complex to establish which genes are orthologs of Arabidopsis genes. Third, during evolution Arabidopsis has lost arbuscular mycorrhizal symbiosis. Fourth, other plants have evolved specialized cell types that are not present in Arabidopsis. Fifth, similarly, C4 photosynthesis cannot be studied in Arabidopsis, which is a C3 plant. Sixth, many other plant species have larger genomes, which has given rise to innovations in transcriptional regulation that are not present in Arabidopsis. Seventh, phenotypes such as acclimation to water stress can be challenging to translate due to different measurement strategies. And eighth, while the circadian oscillator is conserved, there are important nuances in the roles of circadian regulators in crop plants. A key theme emerging across these vignettes is that even when translation is lost, insights can still be gained through comparison with Arabidopsis.
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Affiliation(s)
- Adrienne H K Roeder
- Weill Institute for Cell and Molecular Biology and School of Integrative Plant Science, Section of Plant Biology, Cornell University, 239 Weill Hall, 526 Campus Rd., Ithaca, NY 14853, USA
| | - Andrew Bent
- Department of Plant Pathology, University of Wisconsin—Madison, Madison, WI 53706, USA
| | - John T Lovell
- Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, USA
- US Department of Energy Joint Genome Institute, Berkeley, CA 94720, USA
| | - John K McKay
- Department of Soil and Crop Sciences, Colorado State University, Ft. Collins, CO 80523, USA
| | - Armando Bravo
- Donald Danforth Plant Science Center, St. Louis, MO 63132, USA
| | | | - Kevin W Morimoto
- Howard Hughes Medical Institute, University of California, Davis, Davis, CA 95616, USA
| | - Siobhán M Brady
- Howard Hughes Medical Institute, University of California, Davis, Davis, CA 95616, USA
| | - Lei Hua
- Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, UK
| | - Julian M Hibberd
- Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, UK
| | - Silin Zhong
- The State Key Laboratory of Agrobiotechnology, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, P.R. China
| | - Francesca Cardinale
- PlantStressLab, Department of Agricultural, Forest and Food Sciences, University of Turin, Grugliasco, TO 10095, Italy
| | - Ivan Visentin
- PlantStressLab, Department of Agricultural, Forest and Food Sciences, University of Turin, Grugliasco, TO 10095, Italy
| | - Claudio Lovisolo
- PlantStressLab, Department of Agricultural, Forest and Food Sciences, University of Turin, Grugliasco, TO 10095, Italy
| | - Matthew A Hannah
- BASF, BASF Belgium Coordination Center CommV, Technologiepark 101, 9052 Gent, Belgium
| | - Alex A R Webb
- Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, UK
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5
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Rafiei F, Wiersma J, Scofield S, Zhang C, Alizadeh H, Mohammadi M. Facts, uncertainties, and opportunities in wheat molecular improvement. Heredity (Edinb) 2024; 133:371-380. [PMID: 39237600 PMCID: PMC11589648 DOI: 10.1038/s41437-024-00721-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2023] [Revised: 08/17/2024] [Accepted: 08/18/2024] [Indexed: 09/07/2024] Open
Abstract
The year 2020 was a landmark year for wheat. The wheat HB4 event harboring a drought-resistant gene from sunflowers, received regulatory approval and was grown commercially in Argentina, with approval for food and feed in other countries. This, indeed, is many years after the adoption of genetic modifications in other crops. The lack of consumer acceptance and resulting trade barriers halted the commercialization of the earliest events and had a chilling effect on, especially, private Research & Development (R&D) investments. As regulations for modern breeding technologies such as genome-edited cultivars are being discussed and/or adopted across the globe, we would like to propose a framework to ensure that wheat is not left behind a second time as the potential benefits far outweigh the perceived risks. In this paper, after a review of the technical challenges wheat faces with the generation of trans- and cis-genic wheat varieties, we discuss some of the factors that could help demystify the risk/reward equation and thereby the consumer's reluctance or acceptance of these techniques for future wheat improvement. The advent of next-generation sequencing is shedding light on natural gene transfer between species and the number of perturbations other accepted techniques like mutagenesis create. The transition from classic breeding techniques and embracing transgenic, cisgenic, and genome editing approaches feels inevitable for wheat improvement if we are to develop climate-resilient wheat varieties to feed a growing world population.
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Affiliation(s)
- Fariba Rafiei
- Department of Agronomy, Purdue University, West Lafayette, IN, USA
| | - Jochum Wiersma
- Department of Agronomy and Plant Genetics, University of Minnesota, Northwest Research and Outreach Center, Crookston, MN, USA
| | - Steve Scofield
- USDA-ARS, Crop Production and Pest Control Research Unit, West Lafayette, IN, USA
| | - Cankui Zhang
- Department of Agronomy, Purdue University, West Lafayette, IN, USA
| | - Houshang Alizadeh
- Department of Agronomy & Plant Breeding, College of Agricultural and Natural Resource, University of Tehran, Karaj, Iran
| | - Mohsen Mohammadi
- Department of Agronomy, Purdue University, West Lafayette, IN, USA.
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6
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Jia T, Yang H, Zhou D, Zhao S, Wang J, Zhang T, Huang M, Kong D, Liu Y. Establishment of a Genetic Transformation and Gene Editing Method by Floral Dipping in Descurainia sophia. PLANTS (BASEL, SWITZERLAND) 2024; 13:2833. [PMID: 39458780 PMCID: PMC11510603 DOI: 10.3390/plants13202833] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2024] [Revised: 09/30/2024] [Accepted: 10/01/2024] [Indexed: 10/28/2024]
Abstract
Descurainia sophia L. Webb ex Prantl is used in traditional medicine globally. However, the lack of an efficient and reliable genetic transformation system has seriously limited the investigation of gene function and further utilization of D. sophia. In this study, a highly efficient, time-saving, and cost-effective Agrobacterium tumefaciens-mediated genetic transformation system has been developed in D. sophia. In this method, the transformation was accomplished by simply dipping developing D. sophia inflorescences for 45 s into an Agrobacterium suspension (OD600 = 0.6) containing 5% sucrose and 0.03% (v/v) Silwet L-77. Treated plants were allowed to set seeds which were then plated on a selective medium with hygromycin B (HygB) to screen transformants. Additionally, the CRISPR/Cas9 genomic editing system was validated by targeting phytoene desaturase (PDS) gene using this floral dip method, and mutant plants with the expected albino phenotype could be obtained in 2.5 months. This genetic transformation and targeted editing system will be a valuable tool for routine investigation of gene function and further exploitation in D. sophia.
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Affiliation(s)
| | | | | | | | | | | | | | | | - Yi Liu
- Lushan Botanical Garden, Jiangxi Province and Chinese Academy of Sciences, NO.9 Zhiqing Road, Jiujiang 332900, China; (T.J.); (H.Y.); (D.Z.); (S.Z.); (J.W.); (T.Z.); (M.H.); (D.K.)
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7
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Rahman SU, Khan MO, Ullah R, Ahmad F, Raza G. Agrobacterium-Mediated Transformation for the Development of Transgenic Crops; Present and Future Prospects. Mol Biotechnol 2024; 66:1836-1852. [PMID: 37573566 DOI: 10.1007/s12033-023-00826-8] [Citation(s) in RCA: 15] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2022] [Accepted: 07/14/2023] [Indexed: 08/15/2023]
Abstract
Plant transformation based on Agrobacterium-mediated transformation is a technique that mimics the natural agrobacterium system for gene(s) introduction into crops. Through this technique, various crop species have been improved/modified for different trait/s, showing a successful genetic transformation so far. This technique has many advantages over other transformation methods such as stable integration of transgene, cost effective. However, there are many limitations of this technology such as mostly the crops are recalcitrant to agrobacterium, low transformation efficiency, transgene integration as well as off targets. So, it's very important to explore the major limitations and possible solutions for Agrobacterium-mediated transformation in order to increase its genetic transformation efficiency. Therefore, the present review article gives a comprehensive study how the transgenic crops are developed using Agrobacterium-mediated transformation, crops that have already been modified through this method, and risks associated with transgenic plants based on Agrobacterium-mediated transformation. Moreover, the challenges and problems associated with Agrobacterium-mediated transformation and how those problems can be solved in future for a successful genetic transformation of crops using modern biotechnology techniques such as CRISPR/Cas9 systems. The present review article will be really helpful for the audience those working on Genome editing of crops using Agrobacterium-mediated transformation and will opens many ways for future plant genetic transformation.
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Affiliation(s)
- Saleem Ur Rahman
- National Institute for Biotechnology and Genetic Engineering (NIBGE), Constituent College Pakistan Institute of Engineering and Applied Sciences (PIEAS), Jhang Road, Faisalabad, Pakistan
| | - Muhammad Omar Khan
- National Institute for Biotechnology and Genetic Engineering (NIBGE), Constituent College Pakistan Institute of Engineering and Applied Sciences (PIEAS), Jhang Road, Faisalabad, Pakistan
| | - Rahim Ullah
- Department of Biotechnology, Shahid Benazir Bhatoo University Sheringal, Upper Dir, Khyber Pakhtunkhwa, Pakistan
| | - Fayaz Ahmad
- Agriculture Research Institute (ARI), Swat, Mingora, Khyber Pakhtunkhwa, Pakistan
| | - Ghulam Raza
- National Institute for Biotechnology and Genetic Engineering (NIBGE), Constituent College Pakistan Institute of Engineering and Applied Sciences (PIEAS), Jhang Road, Faisalabad, Pakistan.
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8
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Liu D, He Y, Wang Y, Chen W, Yang J, Zhang Y, Feng Y, Zhao Y, Lin S, Huang L. Tetrad stage transient cold stress skews auxin-mediated energy metabolism balance in Chinese cabbage pollen. PLANT PHYSIOLOGY 2024; 195:1312-1332. [PMID: 38438131 DOI: 10.1093/plphys/kiae123] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Revised: 01/03/2024] [Accepted: 01/21/2024] [Indexed: 03/06/2024]
Abstract
Changing ambient temperature often impairs plant development and sexual reproduction, particularly pollen ontogenesis. However, mechanisms underlying cold stress-induced male sterility are not well understood. Here, we exposed Chinese cabbage (Brassica campestris) to different cold conditions during flowering and demonstrated that the tetrad stage was the most sensitive. After completion of pollen development at optimal conditions, transient cold stress at the tetrad stage still impacted auxin levels, starch and lipid accumulation, and pollen germination, ultimately resulting in partial male sterility. Transcriptome and metabolome analyses and histochemical staining indicated that the reduced pollen germination rate was due to the imbalance of energy metabolism during pollen maturation. The investigation of β-glucuronidase (GUS)-overexpressing transgenic plants driven by the promoter of DR5 (DR5::GUS report system) combined with cell tissue staining and metabolome analysis further validated that cold stress during the tetrad stage reduced auxin levels in mature pollen grains. Low-concentration auxin treatment on floral buds at the tetrad stage before cold exposure improved the cold tolerance of mature pollen grains. Artificially changing the content of endogenous auxin during pollen maturation by spraying chemical reagents and loss-of-function investigation of the auxin biosynthesis gene YUCCA6 by artificial microRNA technology showed that starch overaccumulation severely reduced the pollen germination rate. In summary, we revealed that transient cold stress at the tetrad stage of pollen development in Chinese cabbage causes auxin-mediated starch-related energy metabolism imbalance that contributes to the decline in pollen germination rate and ultimately seed set.
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Affiliation(s)
- Dandan Liu
- Laboratory of Cell & Molecular Biology, Institute of Vegetable Science, Zhejiang University, Hangzhou 310058, China
- Hainan Institute of Zhejiang University, Sanya 572024, China
| | - Yuanrong He
- Laboratory of Cell & Molecular Biology, Institute of Vegetable Science, Zhejiang University, Hangzhou 310058, China
- Hainan Institute of Zhejiang University, Sanya 572024, China
| | - Yijie Wang
- Laboratory of Cell & Molecular Biology, Institute of Vegetable Science, Zhejiang University, Hangzhou 310058, China
| | - Weiwei Chen
- Research Centre for Plant RNA Signaling, College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 311121, China
| | - Jianli Yang
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou 310058, China
| | - Yuzhi Zhang
- Laboratory of Cell & Molecular Biology, Institute of Vegetable Science, Zhejiang University, Hangzhou 310058, China
| | - Yaoyao Feng
- Laboratory of Cell & Molecular Biology, Institute of Vegetable Science, Zhejiang University, Hangzhou 310058, China
| | - Yuxue Zhao
- Laboratory of Cell & Molecular Biology, Institute of Vegetable Science, Zhejiang University, Hangzhou 310058, China
| | - Sue Lin
- College of Life and Environmental Science, Wenzhou University, Wenzhou 325035, China
| | - Li Huang
- Laboratory of Cell & Molecular Biology, Institute of Vegetable Science, Zhejiang University, Hangzhou 310058, China
- Hainan Institute of Zhejiang University, Sanya 572024, China
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9
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Gao B, Liu X, Feng Z, Wu J, Wang J. Potentilla sericea stress-responsive spermine synthase PsSPMS enhances cadmium tolerance in Arabidopsis thaliana. CHEMOSPHERE 2023; 342:140194. [PMID: 37717914 DOI: 10.1016/j.chemosphere.2023.140194] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2023] [Revised: 09/11/2023] [Accepted: 09/14/2023] [Indexed: 09/19/2023]
Abstract
Potentilla sericea is resistant and tolerates rough management. It is an excellent garden groundcover for ecological restoration and soil consolidation for slope protection. Polyamines have functions such as promoting tissue growth and physiological resistance, while spermine synthase catalyzes the production of spermine. The PsSPMS gene from Potentilla sericea was cloned and transformed into Arabidopsis thaliana to study the response of transgenic Arabidopsis thaliana to cadmium stress. The results showed that the contents of spermidine, spermine as well as glutathione were higher in PsSPMS overexpressing Arabidopsis thaliana than the control, while the contents of putrescine were less than the control. Net photosynthetic rate, stomatal conductance, chlorophyll content, water use efficiency, electron transfer rate, PSII-related parameters, proline content, superoxide dismutase, and glutathione reductase activities were higher in PsSPMS overexpressing Arabidopsis thaliana than the control, while malondialdehyde, superoxide anion, and hydrogen peroxide contents were lower than the control. Correlation analysis showed significant differences between the indicators (P < 0.05 and P < 0.01). Expression of AtSPMS, AtSPD3, AtGSH2 and AtGR in transgenic Arabidopsis thaliana was higher than that of the control. Therefore, this study provides a genetic reference for the cultivation of cadmium-tolerant plants through genetic engineering and lays the foundation for further research on cadmium-tolerant Potentilla sericea.
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Affiliation(s)
- Bing Gao
- Northeast Forestry University, Hexing Road, Harbin, Heilongjiang Province, 150040, PR China
| | - Xiangyue Liu
- Northeast Forestry University, Hexing Road, Harbin, Heilongjiang Province, 150040, PR China
| | - Zhenghong Feng
- Northeast Forestry University, Hexing Road, Harbin, Heilongjiang Province, 150040, PR China
| | - Jianhui Wu
- Northeast Forestry University, Hexing Road, Harbin, Heilongjiang Province, 150040, PR China.
| | - Jinghong Wang
- Northeast Forestry University, Hexing Road, Harbin, Heilongjiang Province, 150040, PR China.
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Purwantoro A, Irsyadi MB, Sawitri WD, Fatumi NC, Fajrina SN. Efficient floral dip transformation method using Agrobacterium tumefaciens on Cosmos sulphureus Cav. Saudi J Biol Sci 2023; 30:103702. [PMID: 37485451 PMCID: PMC10362457 DOI: 10.1016/j.sjbs.2023.103702] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Revised: 05/18/2023] [Accepted: 05/24/2023] [Indexed: 07/25/2023] Open
Abstract
Yellow cosmos (Cosmos sulphureus Cav.) is a specific flowering plant and considered a suitable genetic engineering model. Agrobacterium-mediated plant transformation is commonly used for plant genetic engineering. Floral dip transformation is one of the plant genetic transformation methods, and it involves dipping flower buds into an Agrobacterium suspension. Studies on floral dip transformation of yellow cosmos have never been reported. Therefore, an efficient method in plant genetic engineering must be established. This study developed an effective and efficient floral dip transformation method for yellow cosmos. In this study, flower buds with sizes of 5-7 mm were used. Several parameters have been observed to optimize the floral dip method. These parameters included the optical density (OD600) of Agrobacterium culture, concentration of surfactant, and duration of flower bud dipping into the Agrobacterium suspension. The results showed that the floral dip method was most efficient when the flower buds were dipped into Agrobacterium suspension with OD600 = 0.8 and containing 5% sucrose and 0.1% Silwet L-77 for 30 s. This method enhanced the transformation efficiency at a rate of 12.78 ± 1.53%. The neomycin phosphotransferase II and green fluorescent protein genes with sizes of 550 and 736 bp, respectively, were confirmed by polymerase chain reaction. In addition, the transgenic plants were kanamycin resistant and fluorescent under ultraviolet light observation. This finding suggests that the proposed floral dip transformation provides new insights into efficient plant genetic engineering methods for yellow cosmos.
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Affiliation(s)
- Aziz Purwantoro
- Department of Agronomy, Faculty of Agriculture, Universitas Gadjah Mada, Rd. Flora, Bulaksumur, Sleman 55281, Yogyakarta, Indonesia
- Study Program of Master in Plant Breeding, Faculty of Agriculture, Universitas Gadjah Mada, Rd. Flora, Bulaksumur, Sleman 55281, Yogyakarta, Indonesia
| | - Muhammad Burhanuddin Irsyadi
- Study Program of Master in Plant Breeding, Faculty of Agriculture, Universitas Gadjah Mada, Rd. Flora, Bulaksumur, Sleman 55281, Yogyakarta, Indonesia
| | - Widhi Dyah Sawitri
- Department of Agronomy, Faculty of Agriculture, Universitas Gadjah Mada, Rd. Flora, Bulaksumur, Sleman 55281, Yogyakarta, Indonesia
- Study Program of Master in Plant Breeding, Faculty of Agriculture, Universitas Gadjah Mada, Rd. Flora, Bulaksumur, Sleman 55281, Yogyakarta, Indonesia
| | - Nor Chamidah Fatumi
- Department of Agronomy, Faculty of Agriculture, Universitas Gadjah Mada, Rd. Flora, Bulaksumur, Sleman 55281, Yogyakarta, Indonesia
| | - Shania Nur Fajrina
- Department of Agronomy, Faculty of Agriculture, Universitas Gadjah Mada, Rd. Flora, Bulaksumur, Sleman 55281, Yogyakarta, Indonesia
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11
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Pei MS, Liu HN, Ampomah-Dwamena C, Wei TL, Yu YH, Jiao JB, Lv YY, Li F, Li HC, Zhu XJ, Guo DL. A simple and efficient protocol for transient transformation of sliced grape berries. PROTOPLASMA 2023; 260:757-766. [PMID: 36089607 DOI: 10.1007/s00709-022-01810-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2022] [Accepted: 09/06/2022] [Indexed: 06/15/2023]
Abstract
Grape is an economically important crop but recalcitrant to Agrobacterium-mediated genetic transformation and in vitro regeneration. Here, we have developed a protocol for transient transformation of grapes by investigating the effects of explant pre-culture and duration of vacuum infiltration on transformation efficiency. Using sliced grape berries of "Shine-Muscat" (Vitis labrusca × Vitis vinifera) between the end of fruit expansion phase and the mature stage as explants, we firstly compared the effect of pre-culture explants into a susceptible state (incubation on Murashige and Skoog (MS) agar plate in the dark at 25 ± 1 °C for 48 h) with no pre-culture and then tested different vacuum infiltration times on transformation efficiency using β-glucuronidase (GUS) reporter system. Pre-culture increased the susceptibility of explants to the agrobacteria infection and increased transient transformation efficiency as assessed by histochemical GUS activity, with intense blue coloration compared with the faint staining observed in the non-susceptible explants. Using a Circulating Water Vacuum Pump system to facilitate agrobacteria entry into berry cells, we tested vacuum durations of 5, 10, and 15 min and observed that transformation efficiency increased with vacuum duration of infiltration. These results were confirmed by relative gene expression of GUS transgene as assessed by RT-qPCR and GUS activity assay. To further confirm the usefulness of our protocol, we transiently transformed grape berries with the hydrogen peroxide sensor gene VvHPCA3, and this was confirmed by gene expression analysis as well as increased sensitivity of the explants to hydrogen peroxide treatment. Overall, this study has resulted in a simple but efficient transient transformation protocol for grape berries and would be a valuable tool for the rapid testing of gene function and the study of key regulatory networks in this important crop.
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Affiliation(s)
- Mao-Song Pei
- College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang, 471023, Henan Province, People's Republic of China
- Henan Engineering Technology Research Center of Quality Regulation and Controlling of Horticultural Plants, Luoyang, 471023, People's Republic of China
| | - Hai-Nan Liu
- College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang, 471023, Henan Province, People's Republic of China
- Henan Engineering Technology Research Center of Quality Regulation and Controlling of Horticultural Plants, Luoyang, 471023, People's Republic of China
| | | | - Tong-Lu Wei
- College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang, 471023, Henan Province, People's Republic of China
- Henan Engineering Technology Research Center of Quality Regulation and Controlling of Horticultural Plants, Luoyang, 471023, People's Republic of China
| | - Yi-He Yu
- College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang, 471023, Henan Province, People's Republic of China
- Henan Engineering Technology Research Center of Quality Regulation and Controlling of Horticultural Plants, Luoyang, 471023, People's Republic of China
| | - Jia-Bing Jiao
- College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang, 471023, Henan Province, People's Republic of China
- Henan Engineering Technology Research Center of Quality Regulation and Controlling of Horticultural Plants, Luoyang, 471023, People's Republic of China
| | - Ying-Ying Lv
- College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang, 471023, Henan Province, People's Republic of China
- Henan Engineering Technology Research Center of Quality Regulation and Controlling of Horticultural Plants, Luoyang, 471023, People's Republic of China
| | - Feng Li
- Yanqing District Fruit Industry Service Station, Beijing, People's Republic of China
| | - Hong-Chao Li
- Forestry Development Centre of Xiangfu District, Kaifeng, People's Republic of China
| | - Xue-Jie Zhu
- Nong Fa Agricultural Science and Technology Company Limited, Luoyang, People's Republic of China
| | - Da-Long Guo
- College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang, 471023, Henan Province, People's Republic of China.
- Henan Engineering Technology Research Center of Quality Regulation and Controlling of Horticultural Plants, Luoyang, 471023, People's Republic of China.
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12
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Khan UM, Shaheen N, Farooq A, Maqbool R, Khan SH, Azhar MT, Rana IA, Seo H. Optimization of Regeneration and Agrobacterium-Mediated Transformation Protocols for Bi and Multilocular Varieties of Brassica rapa. PLANTS (BASEL, SWITZERLAND) 2022; 12:161. [PMID: 36616290 PMCID: PMC9824786 DOI: 10.3390/plants12010161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Revised: 12/21/2022] [Accepted: 12/23/2022] [Indexed: 06/17/2023]
Abstract
The regeneration of the high-yielding multilocular types has not been attempted, although successful regeneration and transformation in brassica have been done. Here, we report efficient regeneration and transformation protocols for two B. rapa genotypes; UAF11 and Toria. The B. rapa cv UAF11 is a multilocular, non-shattering, and high-yielding genotype, while Toria is the bilocular type. For UAF11 8 shoots and for Toria 7 shoots, explants were observed on MS supplemented with 3 mg/L BAP + 0.4 mg/L NAA + 0.01 mg/L GA3 + 5 mg/L AgNO3 + 0.75 mg/L Potassium Iodide (KI), MS salt supplemented with 1 mg/L IBA and 0.37 mg/L KI produced an equal number of roots (3) in UAF11 and Toria. For the establishment of transformation protocols, Agrobacterium-mediated floral dip transformation was attempted using different induction media, infection time, and flower stages. The induction medium III yielded a maximum of 7.2% transformants on half-opened flowers and 5.2% transformants on fully opened flowers in UAF11 and Toria, respectively, with 15 min of inoculation. This study would provide the basis for the improvement of tissue culture and transformation protocols in multilocular and bilocular Brassica genotypes.
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Affiliation(s)
- Uzair Muhammad Khan
- Center for Advanced Studies in Agriculture and Food Security, University of Agriculture, Faisalabad 38040, Pakistan
| | - Nabeel Shaheen
- Center for Advanced Studies in Agriculture and Food Security, University of Agriculture, Faisalabad 38040, Pakistan
| | - Ayesha Farooq
- Center for Advanced Studies in Agriculture and Food Security, University of Agriculture, Faisalabad 38040, Pakistan
- Department of Plant Breeding and Genetics, University of Agriculture, Faisalabad 38040, Pakistan
| | - Rizwana Maqbool
- Center for Advanced Studies in Agriculture and Food Security, University of Agriculture, Faisalabad 38040, Pakistan
- Department of Plant Breeding and Genetics, University of Agriculture, Faisalabad 38040, Pakistan
| | - Sultan Habibullah Khan
- Center for Advanced Studies in Agriculture and Food Security, University of Agriculture, Faisalabad 38040, Pakistan
- Centre of Agricultural Biochemistry and Biotechnology, University of Agriculture, Faisalabad 38040, Pakistan
| | - Muhammad Tehseen Azhar
- Department of Plant Breeding and Genetics, University of Agriculture, Faisalabad 38040, Pakistan
| | - Iqrar Ahmad Rana
- Center for Advanced Studies in Agriculture and Food Security, University of Agriculture, Faisalabad 38040, Pakistan
- Centre of Agricultural Biochemistry and Biotechnology, University of Agriculture, Faisalabad 38040, Pakistan
| | - Hyojin Seo
- Korea Soybean Research Institute, Jinju 52840, Republic of Korea
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Genome-Wide Identification of ATG Gene Family Members in Fagopyrum tataricum and Their Expression during Stress Responses. Int J Mol Sci 2022; 23:ijms232314845. [PMID: 36499172 PMCID: PMC9739578 DOI: 10.3390/ijms232314845] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2022] [Revised: 11/09/2022] [Accepted: 11/24/2022] [Indexed: 12/02/2022] Open
Abstract
Abiotic stresses such as drought and salinity are major environmental factors limiting plant productivity. Autophagy-related genes are extensively involved in plant growth, development, and adverse stress responses, which have not yet been characterized in Tartary buckwheat (Fagopyrum tataricum, TB). In this study, we verified that drought stress could induce autophagy in TB roots. Next, 49 FtATGs in the whole genome of TB were identified. All FtATGs were randomly distributed in 8 known chromosomes, while 11 FtATGs were predictably segmental repeats. As the core component of autophagy, there were 8 FtATG8s with similar gene structures in TB, while FtATG8s showed high expression at the transcription level under drought and salt stresses. The cis-acting element analysis identified that all FtATG8 promoters contain light-responsive and MYB-binding elements. FtATG8s showed a cell-wide protein interaction network and strongly correlated with distinct stress-associated transcription factors. Furthermore, overexpression of FtATG8a and FtATG8f enhanced the antioxidant enzyme activities of TB under adverse stresses. Remarkably, FtATG8a and FtATG8f may be vital candidates functioning in stress resistance in TB. This study prominently aids in understanding the biological role of FtATG genes in TB.
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14
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Shiraku ML, Magwanga RO, Zhang Y, Hou Y, Kirungu JN, Mehari TG, Xu Y, Wang Y, Wang K, Cai X, Zhou Z, Liu F. Late embryogenesis abundant gene LEA3 (Gh_A08G0694) enhances drought and salt stress tolerance in cotton. Int J Biol Macromol 2022; 207:700-714. [PMID: 35341886 DOI: 10.1016/j.ijbiomac.2022.03.110] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Accepted: 03/17/2022] [Indexed: 11/05/2022]
Abstract
Plants have evolved a complex and organized response to abiotic stress that involves physiological and metabolic reprogramming, transcription control, epigenetic regulation, and expressions of thousand interacting genes for instance the late embryogenesis abundant (LEA) proteins are expressed in multiple environmental variables during the plant developmental period, and thus play critical role in enhancing drought and salt stress tolerance. A comprehensive molecular and functional characterization of the LEA3 gene was carried out in cotton under abiotic stress conditions in order to elucidate their functions. Seventy eight genes were identified in cotton, and were clustered into six clades moreover; the LEA genes were more upregulated in the tissues of the tetraploid cotton compared to the diploid type. A key gene, Gh_A08G0694 was the most upregulated, and was knocked in tetraploid cotton, the knocked out significantly increased the susceptibility of cotton plants to salinity and drought stresses, moreover, several ABA/stress-associated genes were down regulated. Similarly, overexpression of the key gene, significantly increased tolerance of the overexpressed plants to drought and salinity stress. The key gene is homologous to GhLEA3 protein, found to have strong interaction to key abiotic stress tolerance genes, voltage-dependent anion channel 1 (VDAC1) and glyceraldehyde-3-phosphate dehydrogenase A (gapA).
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Affiliation(s)
- Margaret L Shiraku
- State Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, Henan 455000, China
| | - Richard Odongo Magwanga
- State Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, Henan 455000, China; School of Biological and Physical Sciences (SBPS), Main Campus, Jaramogi Oginga Odinga University of Science and Technology (JOOUST), Main Campus, P.O. Box 210-40601, Bondo, Kenya
| | - Yuanyuan Zhang
- State Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, Henan 455000, China
| | - Yuqing Hou
- State Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, Henan 455000, China
| | - Joy Nyangasi Kirungu
- State Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, Henan 455000, China
| | - Teame Gereziher Mehari
- State Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, Henan 455000, China
| | - Yanchao Xu
- State Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, Henan 455000, China
| | - Yuhong Wang
- State Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, Henan 455000, China
| | - Kunbo Wang
- State Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, Henan 455000, China.
| | - Xiaoyan Cai
- State Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, Henan 455000, China; School of Agricultural Sciences, Zhengzhou University, Zhengzhou, Henan 450001, People's Republic of China.
| | - Zhongli Zhou
- State Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, Henan 455000, China.
| | - Fang Liu
- State Key Laboratory of Cotton Biology/Institute of Cotton Research, Chinese Academy of Agricultural Science (ICR, CAAS), Anyang, Henan 455000, China; School of Agricultural Sciences, Zhengzhou University, Zhengzhou, Henan 450001, People's Republic of China.
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15
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Li Y, Huang F, Tao Y, Zhou Y, Bai A, Yu Z, Xiao D, Zhang C, Liu T, Hou X, Li Y. BcGR1.1, a Cytoplasmic Localized Glutathione Reductase, Enhanced Tolerance to Copper Stress in Arabidopsis thaliana. Antioxidants (Basel) 2022; 11:389. [PMID: 35204271 PMCID: PMC8869148 DOI: 10.3390/antiox11020389] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2022] [Revised: 02/07/2022] [Accepted: 02/11/2022] [Indexed: 11/17/2022] Open
Abstract
Copper is a mineral element, which is necessary for the normal growth and development of plants, but high levels of copper will seriously damage plants. Studies have shown that AtGR1 improves the tolerance of Arabidopsis to aluminum and cadmium stress. However, the role of GR in the copper stress response of plants is still unclear. Here, we identified four genes (named BcGR1.1, BcGR1.2, BcGR2.1 and BcGR2.2, respectively) encoding glutathione reductase (GR) in non-heading Chinese cabbage (Brassica campestris (syn. Brassica rapa) ssp. chinensis), which could be divided into two types based on the subcellular localization. Among them, BcGR1.1, which belonged to the cytoplasmic localization type, was significantly upregulated under copper stress. Compared to WT (the wild type), Arabidopsis thaliana heterologously overexpressed BcGR1.1 had longer roots, higher fresh weight, higher GSH levels and GSH/GSSG (oxidized form of GSH) ratio, and accumulated more superoxide dismutase and peroxidase under copper stress. However, in the AsA-GSH cycle under copper stress, the contents of AsA and AsA/DHA were significantly downregulated, and the contents of DHA and T-AsA (total AsA) were upregulated, in the BcGR1.1-overexpressing Arabidopsis. Therefore, BcGR1.1 could improve the scavenging ability of reactive oxygen species (ROS) by increasing the activity of GR, antioxidant enzymes and the utilization of AsA, and then enhance the copper stress tolerance of plants.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | | | - Ying Li
- State Key Laboratory of Crop Genetics & Germplasm Enhancement, Key Laboratory of Biology and Genetic Improvement of Horticultural Crops (East China), Ministry of Agriculture and Rural Affairs of the P. R. China, Engineering Research Center of Germplasm Enhancement and Utilization of Horticultural Crops, Ministry of Education of the P. R. China, Nanjing Agricultural University, Nanjing 210095, China; (Y.L.); (F.H.); (Y.T.); (Y.Z.); (A.B.); (Z.Y.); (D.X.); (C.Z.); (T.L.); (X.H.)
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16
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YAROSHKO O. Achievements in Genetic Engineering of Amaranthus L. Representatives. INTERNATIONAL JOURNAL OF SECONDARY METABOLITE 2021. [DOI: 10.21448/ijsm.925737] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022] Open
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17
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Honda C, Ohkawa K, Kusano H, Teramura H, Shimada H. A simple method for in planta tomato transformation by inoculating floral buds with a sticky Agrobacterium tumefaciens suspension. PLANT BIOTECHNOLOGY (TOKYO, JAPAN) 2021; 38:153-156. [PMID: 34177335 PMCID: PMC8215470 DOI: 10.5511/plantbiotechnology.20.0707a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2020] [Accepted: 07/07/2020] [Indexed: 06/13/2023]
Abstract
Tomato transformation is conventionally performed using Agrobacterium tumefaciens-infected cotyledons. Here, we propose a simple procedure for tomato transformation, by which A. tumefaciens cells were smeared onto floral buds of a tomato plant using a paintbrush. Sufficient numbers of fruits were obtained from them, although the smearing of an excess number of A. tumefaciens cells led to an adverse effect on the plant growth. Progeny plants were screened by growth on a kanamycin-containing selection medium plate. The nptII gene was detected in 10 plants among 1,599 progenies. These transformants were derived from fruits other than those obtained from the smeared buds. This suggested that A. tumefaciens cells moved to the buds located near the smeared buds and caused the transformation event. Our findings suggest that this procedure can be used for the introduction of a foreign gene into plant cells.
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Affiliation(s)
- Chika Honda
- Department of Biological Science and Technology, Tokyo University of Science, Katsushika, Tokyo 125-8585, Japan
| | - Kaoru Ohkawa
- Department of Biological Science and Technology, Tokyo University of Science, Katsushika, Tokyo 125-8585, Japan
| | - Hiroaki Kusano
- Department of Biological Science and Technology, Tokyo University of Science, Katsushika, Tokyo 125-8585, Japan
| | - Hiroshi Teramura
- Department of Biological Science and Technology, Tokyo University of Science, Katsushika, Tokyo 125-8585, Japan
| | - Hiroaki Shimada
- Department of Biological Science and Technology, Tokyo University of Science, Katsushika, Tokyo 125-8585, Japan
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18
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Sharma P, Guria A, Natesan S, Pandi G. Generation of Transgenic Rice Expressing CircRNA and Its Functional Characterization. Methods Mol Biol 2021; 2362:35-68. [PMID: 34195956 DOI: 10.1007/978-1-0716-1645-1_3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Circular RNA (CircRNA) is yet another vital addition to the noncoding RNA family. They are mainly derived by fusion of downstream 3' splice donor with upstream 5' splice acceptor by a noncanonical form of alternative splicing mechanism called backsplicing. An array of functional aspects of these circRNAs has been reported in animal systems. However, functional investigation of circRNA in plants is very limited. In this chapter, we described a methodological outline to study the circRNA biogenesis and to characterize its function(s). Sequence of a newly identified Oryza sativa Indica circRNA flanked by complementary repeat sequences of a rice intron was assembled to yield a circRNA expression cassette. This cassette can be cloned into any plant expression vector which has a suitable promoter (CaMV 35S or ubiquitin promoter) and terminator, and can be used for any circRNA-mediated functional studies. Subsequent agroinfection of rice calli with this cassette yielded circRNA expressing transgenic plants. These transgenic plants were used to establish a correlation between the expressing circRNA, parental gene, and interacting miRNAs. Moreover, effect of circRNA overexpression on plant phenotype under various stress conditions can be studied using these transgenic plants. Also, RNA pull-down assay can be performed to identify the circRNA interacting proteins and the expression of these RBPs can also be studied from these transgenic plants.
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Affiliation(s)
- Priyanka Sharma
- Department of Genetic Engineering, School of Biotechnology, Madurai Kamaraj University, Madurai, India
| | - Ashirbad Guria
- Department of Plant Biotechnology, School of Biotechnology, Madurai Kamaraj University, Madurai, India
| | - Sankar Natesan
- Department of Genetic Engineering, School of Biotechnology, Madurai Kamaraj University, Madurai, India.
| | - Gopal Pandi
- Department of Plant Biotechnology, School of Biotechnology, Madurai Kamaraj University, Madurai, India.
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19
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Shiraku ML, Magwanga RO, Cai X, Kirungu JN, Xu Y, Mehari TG, Hou Y, Wang Y, Agong SG, Peng R, Wang K, Zhou Z, Liu F. Functional Characterization of GhACX3 Gene Reveals Its Significant Role in Enhancing Drought and Salt Stress Tolerance in Cotton. FRONTIERS IN PLANT SCIENCE 2021; 12:658755. [PMID: 34447398 PMCID: PMC8382881 DOI: 10.3389/fpls.2021.658755] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2021] [Accepted: 05/17/2021] [Indexed: 05/03/2023]
Abstract
The acyl-coenzyme A oxidase 3 (ACX3) gene involved in the β-oxidation pathway plays a critical role in plant growth and development as well as stress response. Earlier on, studies focused primarily on the role of β-oxidation limited to fatty acid breakdown. However, ACX3 peroxisomal β-oxidation pathways result in a downstream cascade of events that act as a transduction of biochemical and physiological responses to stress. A role that is yet to be studied extensively. In this study, we identified 20, 18, 22, 23, 20, 11, and 9 proteins in Gossypium hirsutum, G. barbadense, G. tomentosum, G. mustelinum, G. darwinii, G. arboretum, and G. raimondii genomes, respectively. The tetraploid cotton genome had protein ranging between 18 and 22, while diploids had between 9 and 11. After analyzing the gene family evolution or selection pressure, we found that this gene family undergoes purely segmental duplication both in diploids and tetraploids. W-Box (WRKY-binding site), ABRE, CAAT-Box, TATA-box, MYB, MBS, LTR, TGACG, and CGTCA-motif are abiotic stress cis-regulatory elements identified in this gene family. All these are the binding sites for abiotic stress transcription factors, indicating that this gene is essential. Genes found in G. hirsutum showed a clear response to drought and salinity stress, with higher expression under drought and salt stress, particularly in the leaf and root, according to expression analysis. We selected Gh_DO1GO186, one of the highly expressed genes, for functional characterization. We functionally characterized the GhACX3 gene through overexpression and virus-induced gene silencing (VIGS). Overexpression of this gene enhanced tolerance under stress, which was exhibited by the germination assay. The overexpressed seed growth rate was faster relative to control under drought and salt stress conditions. The survival rate was also higher in overexpressed plants relative to control plants under stress. In contrast, the silencing of the GhACX3 gene in cotton plants resulted in plants showing the stress susceptibility phenotype and reduced root length compared to control. Biochemical analysis also demonstrated that GhACX3-silenced plants experienced oxidative stress while the overexpressed plants did not. This study has revealed the importance of the ACX3 family during stress tolerance and can breed stress-resilient cultivar.
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Affiliation(s)
- Margaret L. Shiraku
- Zhengzhou Research Base, State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, China
| | - Richard Odongo Magwanga
- Zhengzhou Research Base, State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, China
- School of Biological and Physical Sciences (SBPS), Main Campus, Jaramogi Oginga Odinga University of Science and Technology (JOOUST), Bondo, Kenya
| | - Xiaoyan Cai
- Zhengzhou Research Base, State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, China
| | - Joy Nyangasi Kirungu
- Zhengzhou Research Base, State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, China
| | - Yanchao Xu
- Zhengzhou Research Base, State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, China
| | - Teame Gereziher Mehari
- Zhengzhou Research Base, State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, China
| | - Yuqing Hou
- Zhengzhou Research Base, State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, China
| | - Yuhong Wang
- Zhengzhou Research Base, State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, China
| | - Stephen Gaya Agong
- School of Biological and Physical Sciences (SBPS), Main Campus, Jaramogi Oginga Odinga University of Science and Technology (JOOUST), Bondo, Kenya
| | - Renhai Peng
- Anyang Institute of Technology, Anyang, China
| | - Kunbo Wang
- Zhengzhou Research Base, State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, China
| | - Zhongli Zhou
- Zhengzhou Research Base, State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, China
- *Correspondence: Zhongli Zhou,
| | - Fang Liu
- Zhengzhou Research Base, State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, China
- Fang Liu,
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20
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Yarra R, Xue Y. Ectopic expression of nucleolar DEAD-Box RNA helicase OsTOGR1 confers improved heat stress tolerance in transgenic Chinese cabbage. PLANT CELL REPORTS 2020; 39:1803-1814. [PMID: 32995946 DOI: 10.1007/s00299-020-02608-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2020] [Revised: 09/13/2020] [Accepted: 09/18/2020] [Indexed: 06/11/2023]
Abstract
The DEAD-Box RNA helicase OsTOGR1 positively regulates heat stress tolerance in Chinese cabbage. Non-heading Chinese cabbage (Brassica rapa L. ssp. chinensis) is primarily cultivated vegetable crop in Asian countries. Heat stress is one of the major threats for its growth and yield. Numerous regulatory genes in various crops have shown to contribute thermotolerance. Among them, Thermotolerant growth required 1 (TOGR1) is an important DEAD-box RNA helicase. To examine whether its role is conserved in other crops, we constructed pCAMBIA1300-pHSP:OsTOGR1 expression vector driven by the rice small heat shock protein promoter (pHSP17.9) and successfully produced transgenic non-heading Chinese cabbage plants expressing OsTOGR1 gene via Agrobacterium-mediated vacuum infiltration transformation. In total, we generated three independent transgenic cabbage lines expressing TOGR1 gene. Expression and integration of TOGR1 was confirmed by PCR, RT-PCR and qPCR in T1 and T2 generations. The relative leaf electrical conductivity of transgenic seedlings was reduced subjected to high temperature (38 °C) compared to heat shock treatment (46 °C). In addition, hypocotyl length of transgenic seedlings increased compared to wild-type plants under high temperature and heat shock treatment. Furthermore, the transgenic plants exhibited higher chlorophyll content than wild-type plants under high temperature and heat shock treatment. The transgenic seeds displayed better germination under heat shock treatment. Tested heat stress-responsive genes were also up-regulated in the transgenic plants subjected to high temperature or heat shock treatment. To the best of our knowledge, this is the first report on describing the role of DAED-Box RNA helicases in improving heat stress tolerance of transgenic plants.
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Affiliation(s)
- Rajesh Yarra
- State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China
| | - Yongbiao Xue
- State Key Laboratory of Plant Cell and Chromosome Engineering, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China.
- University of Chinese Academy of Sciences, Beijing, 100049, China.
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Amal TC, Karthika P, Dhandapani G, Selvakumar S, Vasanth K. A simple and efficient Agrobacterium-mediated in planta transformation protocol for horse gram (Macrotyloma uniflorum Lam. Verdc.). J Genet Eng Biotechnol 2020; 18:9. [PMID: 32206908 PMCID: PMC7090105 DOI: 10.1186/s43141-020-00023-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2019] [Accepted: 03/02/2020] [Indexed: 11/24/2022]
Abstract
BACKGROUND Recalcitrant nature is a major constraint for the in vitro regeneration and genetic transformation of leguminous species members. Therefore, an improved genetic transformation in horse gram has been developed via in planta method, in which Agrobacterium strain harboring binary vector pCAMBIA2301 was used for the transformation. Several factors affecting in planta transformations were put forth viz. Agrobacterium cell density, co-cultivation, and sonication combined with vacuum infiltration duration which were optimized. RESULTS Germinated seeds were sonicated and vacuum infiltrated with different densities of Agrobacterium culture and co-cultivated in half-strength MS medium with 100 μM of acetosyringone for 48 h. Seedlings were washed with cefotaxime and sowed in vermiculite soil for maturation. T1 plants were subjected to histochemical and molecular analysis to ensure transformation efficiency. Among various combinations analyzed, maximum transformation efficiency (20.8%) was attained with seeds of 5 min sonication combined with vacuum infiltration with 0.6 optical density of Agrobacterium culture. CONCLUSIONS It concludes that a different Agrobacterium cell density with sonication combined with vacuum infiltration has improved transgenic efficiency in horse gram plants. This simple and efficient method is feasible for the stable expression of foreign genes that could be beneficial for future food security.
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Affiliation(s)
- Thomas Cheeran Amal
- Molecular Biology Laboratory, Department of Botany, School of Life Sciences, Bharathiar University, Coimbatore, Tamil Nadu 641046 India
| | - Palanisamy Karthika
- Molecular Biology Laboratory, Department of Botany, School of Life Sciences, Bharathiar University, Coimbatore, Tamil Nadu 641046 India
| | - Gurusamy Dhandapani
- PG Research Department of Botany, Kongunadu Arts and Science College, Bharathiar University, Coimbatore, Tamil Nadu 641029 India
| | - Subramaniam Selvakumar
- Department of Biochemistry, School of Life Sciences, Bharathiar University, Coimbatore, Tamil Nadu 641046 India
| | - Krishnan Vasanth
- Molecular Biology Laboratory, Department of Botany, School of Life Sciences, Bharathiar University, Coimbatore, Tamil Nadu 641046 India
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