Residency and space use estimation methods based on passive acoustic telemetry data

Movement traits important to conservation and fisheries management: an example with red snapper

Site fidelity, space use, and dispersal are commonly estimated with acoustic telemetry (AT) to help inform management and conservation. These behaviors can change with age, habitat and environmental conditions and our ability to accurately estimate them is affected by a study's inference power (design components that affect how accurately detection data represents a species' movements). Red snapper (Lutjanus campechanus) have been extensively studied with AT over a range of time periods and regions, although primarily at artificial reefs (AR). Here, we use large (> 12 km2) acoustic positioning arrays to monitor a study area with low-relief hard bottom, a reef ledge, and an AR. Annual fidelity to the study area was estimated to be 54%, but estimates were affected by fate uncertainty and model choice. Emigration increased with storms and in early summer. Abundance was greatest at small habitat patches but space use did not scale with patch size. Although uncommon, long-distance movements and connectivity between habitats occurred, with a maximum dispersal of 206 km. Previous red snapper AT studies varied greatly in array size, study duration, and number of fish tracked, impacting inference power. This made it difficult to compare results and highlights the need for greater standardization in AT methods.

Seasonal coastal residency and large-scale migration of two grey mullet species in temperate European waters

Grey mullets (family Mugilidae) are widespread across coastal, brackish, and freshwater habitats, and have supported fisheries for millennia. Despite their global distribution and commercial value, little is known about their movement ecology and its role in the co-existence of sympatric mullet species. Gaps in knowledge about migratory behaviour, seasonal occurrence, and movement scales have also impeded effective management, highlighting the need for further research. This study aimed to identify key habitats and timing of grey mullet presence across the Dutch Wadden Sea, North Sea, and freshwater areas, and to explore potential behavioral differences between two grey mullet species: thicklip mullet (Chelon labrosus) and thinlip mullet (Chelon ramada). Using acoustic telemetry, we tracked 86 tagged grey mullet over three years (thicklip mullet, N = 74; thinlip mullet, N = 12), combining data from 100 local acoustic receivers and the European Tracking Network. Both species were detected in the Wadden Sea from April to November, however, thinlip mullet arrived in the Wadden Sea earlier than thicklip mullet (median date = May 16 vs. June 7). Individual residency in the Wadden Sea lasted a median 97 days for thicklip mullet and 94 days for thinlip mullet. Thinlip mullet were also detected by more receivers and over a larger area than thicklip mullet, indicating differences in movement behaviour. Both species showed an affinity for receivers near major harbours, with thinlip mullet more often detected near fresh water outflows. Seasonal migrations between coastal and offshore waters were also observed, with one thinlip mullet returning to freshwater across consecutive years. North Sea detections spanned ten months, with a gap during the presumed spawning period (Jan-Feb). Our data suggest that thinlip mullet show a preference for deeper gullies while thicklip mullet may spend more time in shallow areas and flooded tidal flats. These findings highlight the importance of the Wadden Sea as a seasonal foraging ground and provide insights into the migratory patterns of grey mullets.

Calibrating acceleration transmitters to quantify the seasonal energetic costs of activity in lake trout

Bioenergetics models are powerful tools used to address a range of questions in fish biology. However, these models are rarely informed by free-swimming activity data, introducing error. To quantify the costs of activity in free-swimming fish, calibrations produced from standardized laboratory trials can be applied to estimate energy expenditure from sensor data for specific tags and species. Using swim tunnel respirometry, we calibrated acceleration sensor-equipped transmitting tags to estimate the aerobic metabolic rates (ṀO2) of lake trout (Salvelinus namaycush) at three environmentally relevant temperatures. Aerobic and swim performance were also assessed. Like other calibrations, we found strong relationships between ṀO2 and acceleration or swimming speed, and jackknife validations and data simulations suggest that our models accurately predict metabolic costs of activity in adult lake trout (~5% algebraic error and ~20% absolute error). Aerobic and swim performance metrics were similar to those reported in other studies, but their critical swimming speed was lower than expected. Additionally, lake trout exhibited a wide aerobic scope, suggesting that the avoidance of waters ≥15°C may be related to selection for optimal growing temperatures. The ability to quantify the free-swimming energetic costs of activity will advance our understanding of lake trout ecology and may yield improvements to bioenergetics model.

Psychoactive pollutant alters movement dynamics of fish in a natural lake system

Pharmaceutical pollution poses an increasing threat to global wildlife populations. Psychoactive pharmaceutical pollutants (e.g. antidepressants, anxiolytics) are a distinctive concern owing to their ability to act on neural pathways that mediate fitness-related behavioural traits. However, despite increasing research efforts, very little is known about how these drugs might influence the behaviour and survival of species in the wild. Here, we capitalize on the development of novel slow-release pharmaceutical implants and acoustic telemetry tracking tools to reveal that exposure to environmentally relevant concentrations of the benzodiazepine pollutant temazepam alters movement dynamics and decreases the migration success of brown trout (Salmo trutta) smolts in a natural lake system. This effect was potentially owing to temazepam-exposed fish suffering increased predation compared with unexposed conspecifics, particularly at the river-lake confluence. These findings underscore the ability of pharmaceutical pollution to alter key fitness-related behavioural traits under natural conditions, with likely negative impacts on the health and persistence of wildlife populations.

Acoustic telemetry suggests the lesser spotted dogfish Scyliorhinus canicula stays and uses habitats within a French offshore wind farm

Offshore wind farms (OWF) are a rapidly expanding renewable energy source, but their effects on marine wildlife need further investigation. These infrastructures form new artificial habitats that may modify the behaviour and spatial distribution of fish species. Among the species likely to be affected, benthic sharks occupying coastal habitats are particularly exposed to the development of OWF, especially as electrosensitive species. This study used passive acoustic telemetry to investigate the behaviour of a benthic shark, the lesser-spotted dogfish Scyliorhinus canicula, within France's first operational OWF. Most tagged sharks remained in the vicinity of the OWF post-release, exhibiting site fidelity and seasonal residency with reduced presence during winter when water temperatures are the lowest. The primary site frequented is a monopile with scour protection on soft substrate, offering potential shelters and food sources. This study provides new insights into the species' ecology and contributes to improving our understanding of how anthropogenic structure installation in the marine environment affects the behaviour of S. canicula.

The potential of oviduct tags and fine-scale acoustic telemetry to reveal the timing and location of spawning in Arctic salmonids (Salvelinus spp.)

Identifying and characterizing spawning locations are paramount for the protection of critical fish habitats but can be challenging, particularly in remote locations. Using the underexplored oviduct-tagging technique, we aimed to identify the timing and location of spawning for wild Arctic char (Salvelinus alpinus) and lake trout (Salvelinus namaycush) in two high-Arctic lakes in Nunavut. Specifically, Innovasea V7 acoustic telemetry transmitters were inserted into the oviducts of 13 Arctic char and 4 lake trout, and the timing and location of tag expulsion were determined using a fine-scale positioning system. Twenty Arctic char and 20 lake trout were also tagged with abdominal V16 transmitters, and 10 of them were paired with the oviduct tags, to further study the behavior of individual fish during the spawning season. Oviduct tags from four Arctic char and one lake trout could be used to assess the timing and location of spawning. Spawning anadromous Arctic char drastically reduced their activity and remained proximate to their presumed spawning location immediately before and for months after spawning. In contrast, a non-anadromous (i.e., freshwater resident) Arctic char and a lake trout showed little to no reduction in activity around presumed spawning events. Because of the highlighted sedentary behavior of inferred spawning anadromous Arctic char implanted with both abdominal and oviduct tags, we could also infer potential spawning based on the behavior of individuals equipped only with abdominal tags. Spawning areas identified via telemetry also aligned well with Inuit knowledge of those lakes. This is the first field study to use acoustic oviduct and abdominal tags coupled with a fine-scale positioning system. Despite a limited success rate of ejection, the study reveals the strong potential of the method to study spawning habitat and timing, particularly in remote areas.

Environmental stress reduces shark residency to coral reefs

Coral reef ecosystems are highly threatened and can be extremely sensitive to the effects of climate change. Multiple shark species rely on coral reefs as important habitat and, as such, play a number of significant ecological roles in these ecosystems. How environmental stress impacts routine, site-attached reef shark behavior, remains relatively unexplored. Here, we combine 8 years of acoustic tracking data (2013-2020) from grey reef sharks resident to the remote coral reefs of the Chagos Archipelago in the Central Indian Ocean, with a satellite-based index of coral reef environmental stress exposure. We show that on average across the region, increased stress on the reefs significantly reduces grey reef shark residency, promoting more diffuse space use and increasing time away from shallow forereefs. Importantly, this impact has a lagged effect for up to 16 months. This may have important physiological and conservation consequences for reef sharks, as well as broader implications for reef ecosystem functioning. As climate change is predicted to increase environmental stress on coral reef ecosystems, understanding how site-attached predators respond to stress will be crucial for forecasting the functional significance of altering predator behavior and the potential impacts on conservation for both reef sharks and coral reefs themselves.

Incorporating vertical movement of fishes in habitat use models

Fish telemetry studies now routinely collect positional and depth data, yet analytical approaches that integrate three-dimensional data are limited. Here we apply the potential path volume (PPV) model, a method previously developed to estimate habitat volume based on rates of avian movement, to free-swimming fish. Using a telemetry dataset of white sucker (Catastomus commersonii) from Turkey Lake (Ontario, Canada), we evaluated the effects of the number of spatial positions and different methods of selecting swim speed (vswim), a key parameter for PPV models, on habitat volume estimates. We subsequently compared habitat volume estimates and habitat overlap among white sucker pairs from the PPV models to those calculated using kernel utilization distribution-based approaches. The number of spatial positions in the PPV model had a significant effect on habitat volume estimates, whereas the magnitude of the vswim parameter or its specificity (constant value vs. fish-season specific parameter values) did not affect habitat volume estimates. The PPV method resulted in larger habitat volume estimates and greater habitat overlap estimates among fish pairs relative to those obtained from a three-dimensional kernel utilization distribution method. The PPV model is a useful analytical tool that, by incorporating potential animal movement into habitat use evaluations, can help answer key ecological questions and provide insight into fish space use in a wide range of conservation and management applications.

Long-distance migrations and seasonal movements of meagre (Argyrosomus regius), a large coastal predator, along the Iberian Peninsula coast

BACKGROUND

The meagre, Argyrosomus regius, is a large coastal predatory fish inhabiting waters from the north-eastern Atlantic and Mediterranean Sea, where it is targeted by commercial and recreational fisheries. Previous genetic studies have found an unexpectedly high population differentiation not only between the Atlantic and the Mediterranean, but also along the Atlantic coast. However, the reasons underpinning this genetic barrier remained unclear. Likewise, even though the species is amongst the world's largest marine teleosts, knowledge about its movement ecology and migratory behaviour remains notably scarce, and primarily reliant on fisheries-dependent data.

METHODS

In this study, we used a combination of acoustic telemetry and pop-up satellite archival tags to investigate the movements of 22 adult meagre (70-143 cm total length) along the Southwestern coast of the Iberian Peninsula.

RESULTS

Our results strongly suggest that the previously reported genetic differentiation is not maintained by limited adult dispersal/movement, as hypothesized. On the contrary, we documented some of the longest individual annual migrations ever recorded for a coastal teleost, up to > 2000 km, with frequent back-and-forth movements between the West and Southern Iberian coasts. Moreover, their detected regional movement patterns support the existence of a marked seasonal behavioural shift, with individuals being less active and moving to deeper waters during winter, and are consistent with spawning philopatry associated to their summer reproductive movements. Finally, we identified putative aggregation areas that may harbour important feeding/overwintering grounds.

CONCLUSIONS

These findings shed new light on the movement and behaviour patterns of meagre that may be of particular importance for the conservation and spatial management of this species throughout its range, and open the door to further research on functional connectivity.

Continuous sound from a marine vibrator causes behavioural responses of free-ranging, spawning Atlantic cod (Gadus morhua)

Marine vibrators are a new technology being developed for seismic surveys. These devices can transmit continuous instead of impulsive sound and operate over a narrower frequency band and at lower peak pressure than airguns, which is assumed to reduce their environmental impacts. We exposed spawning Atlantic cod (Gadus morhua) to sound produced by a prototype, but full-scale, marine vibrator, and monitored behavioural responses of tagged cod using acoustic telemetry. Fish were exposed to 10 × 3 h continuous sound treatments over a 4-day period using a randomised-block design. Sound exposure levels were comparable to airgun exposure experiments conducted previously with the same set-up ranging from ∼115 to 145 dB re 1 μPa2s during exposure. Telemetry data were used to assess 1) whether marine vibrator exposure displaced cod from the spawning ground, through estimation of residence and survival probabilities, and 2) fine-scale behavioural responses within the test site, namely swimming depth, activity levels, displacement, and home ranges. Forty-two spawning cod were tagged prior to the exposure, with 22 present during the exposure. All 22 tags were equipped with pressure sensors and ten of these additionally with accelerometers. While no premature departure from the spawning site was observed, cod reacted to the exposure by decreasing their activity levels (by up to 50%, SE = 7%) and increasing their swimming depth (by up to 2.5 m, SE = 1.0 m) within the test site during the exposure period. These behavioural responses varied by sex and time of day. Cod reactions to a marine vibrator may be more pronounced than reactions to airguns, possibly because continuous sound is more disturbing to fish than intermittent sound at the same exposure levels. However, given sample size limitations of the present study, further studies with continuous sound are necessary to fully understand its impact and biological significance.

Comparing acoustic and satellite telemetry: an analysis quantifying the space use of Chelonia mydas in Bimini, Bahamas

Passive acoustic and Argos satellite telemetry are common methods for tracking marine species and are often used similarly to quantify space use. However, data-driven comparisons of these methods and their associated ecological inferences are limited. To address this, we compared temporal durations, spatial resolutions, financial costs and estimates of occurrence and range distributions for each tracking approach using nine juvenile green turtles (Chelonia mydas) in Bimini, Bahamas. Tracking durations were similar, although acoustic tracking provided higher spatiotemporal resolution than satellite tracking. Occurrence distributions (95%) estimated from satellite telemetry were 12 times larger than those from acoustic telemetry, while satellite range distributions (95%) were 89 times larger. While individuals generally remained within the extent of the acoustic receiver array, gaps in coverage were identified. These gaps, combined with the lower accuracy of satellite telemetry, were likely drivers for the larger satellite distributions. Costs differed between telemetry methods, with acoustic telemetry being less expensive at larger sample sizes with a previously established array. Our results suggest that acoustic and satellite telemetry may not provide similar inferences of individual space use. As such, we provide recommendations to identify telemetry methods appropriate for specific study objectives and provide discussion on the biases of each.

Large females connect Atlantic cod spawning sites

The Earth's ecosystems are increasingly deprived of large animals. Global simulations suggest that this downsizing of nature has serious consequences for biosphere functioning. However, the historical loss of large animals means that it is now often impossible to secure empirical data revealing their true ecological importance. We tracked 465 mature Atlantic cod (Gadus morhua) during their winter spawning season and show that large females (up to 114 centimeters in length), which are still found in mid-Norway, were characterized by more complex movement networks compared with smaller females. Large males were sparse but displayed similar movement patterns. Our finding implies that management programs promoting large fish will have positive impacts on population resilience by facilitating the continued use of a diversity of spawning habitats and the connectivity between them.

Individual residency behaviours and seasonal long-distance movements in acoustically tagged Caribbean reef sharks in the Cayman Islands

Understanding how reef-associated sharks use coastal waters through their ontogeny is important for their effective conservation and management. This study used the horizontal movements of acoustically tagged Caribbean reef sharks (Carcharhinus perezi) to examine their use of coastal space around the Cayman Islands between 2009 and 2019. A total of 39 (59.1%) tagged sharks (male = 22, female = 17, immature = 18, mature = 21) were detected on the islands wide network of acoustic receivers. The detection data were used to calculate values of Residency Index (RI), Site-Fidelity Index (SFI) and minimum linear displacement (MLD), as well as for network analysis of individual shark movements to test for differences between demographics, seasons, and diel periods. Sharks were detected for up to 1,598 days post-tagging and some individuals showed resident behaviour but the majority of tagged individuals appear to have been one-off or only occasional transient visitors to the area. Generally, individuals showed strong site-fidelity to different areas displaying linear home ranges of < 20 km. The evidence indicates that there was no pattern of diel behaviour. Tagged sharks generally showed increased movements within and between islands during the summer (April-September), which may be related to breeding activity. Some individuals even made occasional excursions across 110 km of open water > 2,000 m deep between Grand Cayman and Little Cayman. One mature female shark showed a displacement of 148.21 km, the greatest distance reported for this species. The data shows that the distances over which some sharks moved, greatly exceeded the extent of any one of the islands' marine protected areas indicating that this species may be more mobile and dispersive than previously thought. This study provides support for the blanket protection to all sharks throughout Cayman waters, which was incorporated within the National Conservation Act in 2015.

What acoustic telemetry can and cannot tell us about fish biology

Acoustic telemetry (AT) has become ubiquitous in aquatic monitoring and fish biology, conservation, and management. Since the early use of active ultrasonic tracking that required researchers to follow at a distance their species of interest, the field has diversified considerably, with exciting advances in both hydrophone and transmitter technology. Once a highly specialized methodology, however, AT is fast becoming a generalist tool for those wishing to study or conserve fishes, leading to diversifying application by non-specialists. With this transition in mind, we evaluate exactly what AT has become useful for, discussing how the technological and analytical advances around AT can address important questions within fish biology. In doing so, we highlight the key ecological and applied research areas where AT continues to reveal crucial new insights and, in particular, when combined with complimentary research approaches. We provide a comprehensive breakdown of the state of the art for applications of AT, discussing the ongoing challenges, where its strengths lie, and how future developments may revolutionize fisheries management, behavioral ecology and species protection. Through selected papers we illustrate specific applications across the broad spectrum of fish biology. By bringing together the recent and future developments in this field under categories designed to broadly capture many aspects of fish biology, we hope to offer a useful guide for the non-specialist practitioner as they attempt to navigate the dizzying array of considerations and ongoing developments within this diverse toolkit.