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Li S, He Y, Mann DA, Deng X. Global spread of Salmonella Enteritidis via centralized sourcing and international trade of poultry breeding stocks. Nat Commun 2021; 12:5109. [PMID: 34433807 PMCID: PMC8387372 DOI: 10.1038/s41467-021-25319-7] [Citation(s) in RCA: 41] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Accepted: 08/03/2021] [Indexed: 11/22/2022] Open
Abstract
A pandemic of Salmonella enterica serotype Enteritidis emerged in the 1980s due to contaminated poultry products. How Salmonella Enteritidis rapidly swept through continents remains a historical puzzle as the pathogen continues to cause outbreaks and poultry supply becomes globalized. We hypothesize that international trade of infected breeding stocks causes global spread of the pathogen. By integrating over 30,000 Salmonella Enteritidis genomes from 98 countries during 1949-2020 and international trade of live poultry from the 1980s to the late 2010s, we present multifaceted evidence that converges on a high likelihood, global scale, and extended protraction of Salmonella Enteritidis dissemination via centralized sourcing and international trade of breeding stocks. We discovered recent, genetically near-identical isolates from domestically raised poultry in North and South America. We obtained phylodynamic characteristics of global Salmonella Enteritidis populations that lend spatiotemporal support for its dispersal from centralized origins during the pandemic. We identified concordant patterns of international trade of breeding stocks and quantitatively established a driving role of the trade in the geographic dispersal of Salmonella Enteritidis, suggesting that the centralized origins were infected breeding stocks. Here we demonstrate the value of integrative and hypothesis-driven data mining in unravelling otherwise difficult-to-probe pathogen dissemination from hidden origins.
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Affiliation(s)
- Shaoting Li
- Center for Food Safety, University of Georgia, Griffin, GA, USA
| | - Yingshu He
- Center for Food Safety, University of Georgia, Griffin, GA, USA
| | - David Ames Mann
- Center for Food Safety, University of Georgia, Griffin, GA, USA
| | - Xiangyu Deng
- Center for Food Safety, University of Georgia, Griffin, GA, USA.
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Koutsoumanis K, Allende A, Alvarez-Ordóñez A, Bolton D, Bover-Cid S, Chemaly M, De Cesare A, Herman L, Hilbert F, Lindqvist R, Nauta M, Peixe L, Ru G, Simmons M, Skandamis P, Suffredini E, Dewulf J, Hald T, Michel V, Niskanen T, Ricci A, Snary E, Boelaert F, Messens W, Davies R. Salmonella control in poultry flocks and its public health impact. EFSA J 2019; 17:e05596. [PMID: 32626222 PMCID: PMC7009056 DOI: 10.2903/j.efsa.2019.5596] [Citation(s) in RCA: 65] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
An increase in confirmed human salmonellosis cases in the EU after 2014 triggered investigation of contributory factors and control options in poultry production. Reconsideration of the five current target serovars for breeding hens showed that there is justification for retaining Salmonella Enteritidis, Salmonella Typhimurium (including monophasic variants) and Salmonella Infantis, while Salmonella Virchow and Salmonella Hadar could be replaced by Salmonella Kentucky and either Salmonella Heidelberg, Salmonella Thompson or a variable serovar in national prevalence targets. However, a target that incorporates all serovars is expected to be more effective as the most relevant serovars in breeding flocks vary between Member State (MS) and over time. Achievement of a 1% target for the current target serovars in laying hen flocks is estimated to be reduced by 254,400 CrI95[98,540; 602,700] compared to the situation in 2016. This translates to a reduction of 53.4% CrI95[39.1; 65.7] considering the layer-associated human salmonellosis true cases and 6.2% considering the overall human salmonellosis true cases in the 23 MSs included in attribution modelling. A review of risk factors for Salmonella in laying hens revealed that overall evidence points to a lower occurrence in non-cage compared to cage systems. A conclusion on the effect of outdoor access or impact of the shift from conventional to enriched cages could not be reached. A similar review for broiler chickens concluded that the evidence that outdoor access affects the occurrence of Salmonella is inconclusive. There is conclusive evidence that an increased stocking density, larger farms and stress result in increased occurrence, persistence and spread of Salmonella in laying hen flocks. Based on scientific evidence, an impact of Salmonella control programmes, apart from general hygiene procedures, on the prevalence of Campylobacter in broiler flocks at the holding and on broiler meat at the end of the slaughter process is not expected.
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Matsui H, Fukiya S, Kodama-Akaboshi C, Eguchi M, Yamamoto T. Mouse models for assessing the cross-protective efficacy of oral non-typhoidal Salmonella vaccine candidates harbouring in-frame deletions of the ATP-dependent protease lon and other genes. J Med Microbiol 2015; 64:295-302. [PMID: 25589672 DOI: 10.1099/jmm.0.000014] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
In BALB/c mouse models of Salmonella enterica serovar Typhimurium infection, a single oral immunization with a mutant strain with an insertion of the chloramphenicol resistance gene into the ATP-dependent protease clpP or lon gene decreased the number of salmonellae in each tissue sample 5 days after oral challenge with virulent S. Typhimurium at weeks 26 and 54 post-immunization. These data suggested that an oral immunization with the ClpP- or Lon-disrupted S. Typhimurium strain could provide long-term protection against oral challenge with virulent S. Typhimurium. Accordingly, recombinant oral non-typhoidal Salmonella (NTS) vaccines were constructed by incorporating mutants of both S. Typhimurium and S. enterica serovar Enteritidis harbouring stable in-frame markerless deletions of the clpP-lon-sulA (suppressor of lon), lon-sulA or lon-msbB (acyltransferase) genes. Amongst these orally administered vaccine candidates, those with the lon-sulA gene deletion mutants of S. Typhimurium and S. Enteritidis protected BALB/c and C57BL/6J mice against oral challenge with both virulent S. Typhimurium and virulent S. Enteritidis. Therefore, the in-frame markerless lon-sulA gene deletion mutant of S. Typhimurium or S. Enteritidis could be a promising cross-protective NTS live vaccine candidate for practical use in humans.
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Affiliation(s)
- Hidenori Matsui
- Kitasato Institute for Life Sciences and Graduate School of Infection Control Sciences, Kitasato University, 5-9-1 Shirokane, Minato-ku, Tokyo 108-8641, Japan
| | - Satoru Fukiya
- Kitasato Institute for Life Sciences and Graduate School of Infection Control Sciences, Kitasato University, 5-9-1 Shirokane, Minato-ku, Tokyo 108-8641, Japan
| | - Chie Kodama-Akaboshi
- Kitasato Institute for Life Sciences and Graduate School of Infection Control Sciences, Kitasato University, 5-9-1 Shirokane, Minato-ku, Tokyo 108-8641, Japan
| | - Masahiro Eguchi
- National Institute of Animal Health, National Agriculture and Food Research Organization, 3-1-5 Kannondai, Tsukuba, Ibaraki 305-0856, Japan
| | - Tomoko Yamamoto
- Graduate School of Pharmaceutical Sciences, Chiba University, Yayoi-cho, Inage-ku, Chiba 263-8522, Japan
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WATANABE O, OGINO M, IWAMOTO A, AKIYAMA T, MIKI T. Henhouse Feeding Style and Salmonella Enteritidis Contamination in Unvaccinated Flocks of Egg Farms, April 1994-March 2001. J Vet Med Sci 2012; 74:575-82. [DOI: 10.1292/jvms.11-0358] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Affiliation(s)
- Osamu WATANABE
- Department of Hygiene Service, Himeji Livestock Hygiene Service Center, 2-10-16, Tadera-higashi, Himeji, Hyogo 670-0081, Japan
- Animal Husbandry Department, Hokubu Agricultural Technology Institute, Hyogo Prefectural Technology Center for Agriculture, Forestry and Fisheries, 123, Yasui, Wadayama, Asago, Hyogo 669-5254, Japan
| | - Masao OGINO
- Department of Hygiene Service, Himeji Livestock Hygiene Service Center, 2-10-16, Tadera-higashi, Himeji, Hyogo 670-0081, Japan
| | - Asako IWAMOTO
- Department of Hygiene Service, Himeji Livestock Hygiene Service Center, 2-10-16, Tadera-higashi, Himeji, Hyogo 670-0081, Japan
| | - Takayuki AKIYAMA
- Department of Hygiene Service, Himeji Livestock Hygiene Service Center, 2-10-16, Tadera-higashi, Himeji, Hyogo 670-0081, Japan
| | - Takahiro MIKI
- Department of Hygiene Service, Himeji Livestock Hygiene Service Center, 2-10-16, Tadera-higashi, Himeji, Hyogo 670-0081, Japan
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Okamura M, Tachizaki H, Kubo T, Kikuchi S, Suzuki A, Takehara K, Nakamura M. Comparative evaluation of a bivalent killed Salmonella vaccine to prevent egg contamination with Salmonella enterica serovars Enteritidis, Typhimurium, and Gallinarum biovar Pullorum, using 4 different challenge models. Vaccine 2007; 25:4837-44. [PMID: 17485152 DOI: 10.1016/j.vaccine.2007.03.004] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2006] [Revised: 02/26/2007] [Accepted: 03/05/2007] [Indexed: 10/23/2022]
Abstract
We evaluated a newly developed commercial bivalent killed Salmonella vaccine Oilvax SET for its ability to decrease contamination with Salmonella enterica serovars Enteritidis and Typhimurium in layer chickens. In either an oral or intravaginal challenge model, the fecal shedding was decreased in vaccinated hens, but egg contamination was not evaluated due to scarcity of contaminated eggs even in the unvaccinated control groups. In contrast, an intravenous and an intraperitoneal challenge resulted in the relatively high level of egg contamination in unvaccinated chickens, which was significantly reduced in vaccinated chickens. In a second experiment, 2 strains of Salmonella serovar Gallinarum biovar Pullorum, which has the common O9 antigen with SE and transmits vertically into eggs, were used to test the efficacy of the Oilvax SET against egg transmission. Vertical egg transmission by the Pullorum strain was significantly reduced in the vaccinated groups of hens. The Oilvax SET can be a useful tool in the control of Salmonella egg contamination in laying hens.
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Affiliation(s)
- Masashi Okamura
- Laboratory of Zoonoses, School of Veterinary Medicine and Animal Sciences, Kitasato University, Towada, Aomori 034-8628, Japan
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Lee YJ, Kim HJ, Park CK, Kim KS, Bae DH, Kang MS, Cho JK, Kim AR, Kim JW, Kim BH. Characterization of Salmonella spp. Isolated from an Integrated Broiler Chicken Operation in Korea. J Vet Med Sci 2007; 69:399-404. [PMID: 17485928 DOI: 10.1292/jvms.69.399] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
The purpose of this study was to investigate the biological and genetic characterization of persistent Salmonella isolates in an integrated broiler chicken operation, in an attempt to elucidate the source of contamination. From the breeder farm, the hatchery, the broiler farm and the chicken slaughter house of an integrated broiler chicken operation, a total of 6 serotypes were observed. Although S. Heidelberg was not detected in the broiler farm, it was consistently found in the breeder farm, the hatchery and the chicken slaughter house. Also, S. Enteritidis and S. Senftenberg were found in the hatchery and the chicken slaughter house, and the hatchery and the broiler farm, respectively. S. Gallinarum and S. Blockley were found only in the broiler farm, and S. Virchow was only recovered in the chicken slaughter house. Isolated S. Heidelberg, S. Enteritidis and S. Senftenberg strains were divided into 3, 5 and 7 types, respectively, on the basis of all properties. Especially, S. Senftenberg isolates, divided into four types by their antimicrobial resistance patterns, were all obviously the XbaI PFGE pattern. Also, four S. Enteritidis isolates resistant to nalidixic acid showed a difference in phage type and PFGE pattern. Such a different pattern was shown despite Salmonella isolates originating from an integrated broiler operation, suggesting that further epidemiological studies on many integrated chicken companies in Korea are needed.
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Affiliation(s)
- Young Ju Lee
- College of Veterinary Medicine, Kyungpook National University, Daegu, Republic of Korea
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Kassaify ZG, Mine Y. Effect of food protein supplements on Salmonella enteritidis infection and prevention in laying hens. Poult Sci 2004; 83:753-60. [PMID: 15141832 DOI: 10.1093/ps/83.5.753] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Reduction of intestinal colonization of Salmonella enteritidis (SE) during the grow-out period is crucial to provide safer eggs, minimize economic losses, and reduce the spread of human salmonellosis. In the search for novel elimination and prevention methods based on feed supplementation, the effects of feed supplemented with nonimmunized egg yolk powder (did not contain anti-S. enteritidis antibodies), immunized egg yolk powder (with anti-S. enteritidis antibodies), egg yolk proteins, egg white, and skim milk powder were examined on laying hens. In the elimination study, the chickens were orally infected with SE then given a supplemented feed of 5, 10, or 15% (wt/wt) of each of the test samples. Fecal samples tested weekly showed an absence of SE after the first week of feeding nonimmunized egg yolk powder and a gradual decrease with the other samples. In the prevention study, Salmonella-free chickens were fed the supplemented feed for 4 wk and then infected orally. Fecal samples tested for 4 wk showed that SE was prevented from colonizing the intestinal tract throughout the test period by nonimmunized egg yolk powder, whereas the other samples only delayed the colonization. None of the fed supplements disrupted the balance of the intestinal microflora, and the counts in the feces remained constant. These results show that the administration of only 5.0% (wt/wt) of nonimmunized egg yolk powder can eliminate and prevent SE colonization in laying hens with no adverse effects. Furthermore, the present results indicate that hen egg yolk contains novel anti-adhesive or immunomodulatory components that may act to prevent SE infection.
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Affiliation(s)
- Z G Kassaify
- Department of Food Science, University of Guelph, Guelph, Ontario, Canada N1G 2W1
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Okamura M, Lillehoj HS, Raybourne RB, Babu U, Heckert R. Antigen-specific lymphocyte proliferation and interleukin production in chickens immunized with killed Salmonella enteritidis vaccine or experimental subunit vaccines. Avian Dis 2004; 47:1331-8. [PMID: 14708979 DOI: 10.1637/6096] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Lymphocyte proliferation and interleukin (IL)-2 and IL-6 levels in serum were measured as indicators of cell-mediated immunity after immunization of chickens with a commercial killed Salmonella enteritidis (SE) vaccine or experimental subunit vaccines of crude protein (CP) extract or the outer membrane protein (OMP). Significantly increased proliferative responses to SE flagella, but not lipopolysaccharide, porin, CP, or OMP, were observed at 1 wk postimmunizarion in the three vaccination groups. The responses to flagella were specific because flagella-induced proliferation was not seen in chickens immunized with adjuvant alone. Of the three immunization protocols, use of the killed SE vaccine appeared most effective because it induced higher flagella-stimulated lymphocyte proliferation at 1 and 2 wk postvaccination compared with the CP- and OMP-vaccinated groups. Significantly increased IL-2 and IL-6 levels in serum were seen at 1 wk postimmunization in the three vaccination groups compared with adjuvant alone, but there were no differences between the killed vaccine and the subunit vaccines at this time, and the levels of both lymphokines returned to baseline at 2 wk postimmunization. We conclude that cell-mediated immunity to SE after vaccination with the killed bacterial vaccine or subunit vaccines is transient and mainly limited to flagella.
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Affiliation(s)
- M Okamura
- Parasite Biology, Epidemiology, and Systematics Laboratory, Animal and Natural Resources Institute, USDA-ARS, Beltsville, MD 20705, USA
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Davies R, Breslin M. Effects of vaccination and other preventive methods for Salmonella
Enteritidis on commercial laying chicken farms. Vet Rec 2003. [DOI: 10.1136/vr.153.22.673] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
- R. Davies
- Department of Bacterial Diseases; Veterinary Laboratories Agency- Weybridge; New Haw, Addlestone Surrey KT15 3NB
| | - M. Breslin
- Department of Bacterial Diseases; Veterinary Laboratories Agency- Weybridge; New Haw, Addlestone Surrey KT15 3NB
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Gama NMSQ, Berchieri Jr A, Fernandes SA. Occurrence of Salmonella sp in laying hens. BRAZILIAN JOURNAL OF POULTRY SCIENCE 2003. [DOI: 10.1590/s1516-635x2003000100002] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Davies R, Breslin M. Environmental contamination and detection of Salmonella enterica
serovar enteritidis
in laying flocks. Vet Rec 2001. [DOI: 10.1136/vr.149.23.699] [Citation(s) in RCA: 59] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Affiliation(s)
- R. Davies
- Department of Bacterial Diseases; Veterinary Laboratories Agency-Weybridge; New Haw, Addlestone Surrey KT15 3NB
| | - M. Breslin
- Department of Bacterial Diseases; Veterinary Laboratories Agency-Weybridge; New Haw, Addlestone Surrey KT15 3NB
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Shirota K, Katoh H, Murase T, Ito T, Otsuki K. Monitoring of layer feed and eggs for Salmonella in eastern Japan between 1993 and 1998. J Food Prot 2001; 64:734-7. [PMID: 11348011 DOI: 10.4315/0362-028x-64.5.734] [Citation(s) in RCA: 44] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
In order to investigate contamination of chicken farms with Salmonella, feed and eggs were sampled from 16 commercial layer farms in eastern Japan between 1993 and 1998 and cultured for salmonellae. Salmonella enterica subsp. enterica isolates belonging to 19 serovars were obtained from the feed. Six of the 19 serotypes, including Salmonella serovar Enteritidis, were observed in isolates recovered from the eggs. Salmonella serovar Enteritidis strains obtained from a feed sample and egg contents in a layer farm showed pulsed-field gel electrophoresis patterns that were genetically related and belonged to a single phage type, suggesting that the contamination of the farms was linked to the occurrence of salmonellae in feed.
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Affiliation(s)
- K Shirota
- Poultry Products Quality Control Co, Ltd, Nihonmats, Fukushima, Japan
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Kojima A, Uchida I, Sekizaki T, Sasaki Y, Ogikubo Y, Tamura Y. Rapid detection and identification of Clostridium chauvoei by PCR based on flagellin gene sequence. Vet Microbiol 2001; 78:363-71. [PMID: 11182502 DOI: 10.1016/s0378-1135(00)00339-4] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
We developed a one-step polymerase chain reaction (PCR) system that specifically detects Clostridium chauvoei. Oligonucleotide primers were designed to amplify a 516-bp fragment of the structural flagellin gene. The specificity of the PCR was investigated by analyzing 59 strains of clostridia, and seven strain of other genera. A 516-bp fragment could be amplified from all the C. chauvoei strains tested, and no amplification was observed by using DNAs from the other strains tested, including Clostridium septicum. Similarly, this PCR-based method specifically detected C. chauvoei DNA sequences in samples of muscle and exudate of obtained from mice within 12h of inoculation. In tests using samples of muscle or liver, the limit of detection was about 200 organisms per reaction. These results suggest that the one-step PCR system may be useful for direct detection and identification of C. chauvoei in clinical specimens.
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Affiliation(s)
- A Kojima
- National Veterinary Assay Laboratory, Ministry of Agriculture, Forestry and Fisheries, 1-15-1, Tokura, Kokubunji, 185-8511, Tokyo, Japan.
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Gast RK. Understanding Salmonella enteritidis in laying chickens: the contributions of experimental infections. Int J Food Microbiol 1994; 21:107-16. [PMID: 8155468 DOI: 10.1016/0168-1605(94)90204-6] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
A significant proportion of human Salmonella enteritidis (SE) outbreaks in recent years has been traced to the consumption of contaminated eggs produced by infected laying flocks. Experimental SE infections in chickens have been used to acquire a considerable amount of basic information about the interaction between SE and the avian host. After oral or parenteral inoculation of chickens, SE can colonize the intestinal tract, invade and disseminate to reach numerous internal organ sites, and elicit the production of specific antibodies in serum and egg yolks. Experimental infection of laying hens can result in the deposition of SE in the contents of eggs before oviposition, although generally in rather small numbers and at a relatively low frequency. The consequences of experimental SE infection have been shown to vary significantly with the strain and dose of the inoculum. Some SE isolates have been shown to produce various clinical effects, including decreased egg production by hens. The information provided by experimental SE infections in chickens has played an important role in the formulation of appropriate strategies for reducing the incidence of SE in commercial laying flocks and thereby also reducing the incidence of transmission of SE to consumers via contaminated eggs.
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Affiliation(s)
- R K Gast
- United States Department of Agriculture, Southeast Poultry Research Laboratory, Athens, GA
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Abstract
Salmonella enteritidis is a common pathogen of all species of mammals and fowls. The recent increase in the number of outbreaks of food poisoning due to S. enteritidis in man was epidemiologically analysed, and it was considered that contaminated eggs or egg products were the major source of this infection. To assist in prevention and eradication of human food poisoning many investigators have studied the pathogenicity of S. enteritidis in poultry. Gross pathological observations after natural and experimental infections with S. enteritidis in poultry revealed that this organism may cause systemic infection in chicks and laying hens accompanied by prolonged faecal shedding. Some variations in the mortality rates, clinical symptoms, faecal shedding and frequency of production of contaminated eggs were observed in the chicks and hens experimentally infected with S. enteritidis isolates. Choice of bacterial strain, phage type, age of bird and inoculum size may affect the outcome of an infection. Moreover, isolation of the organisms from the ovaries, oviducts and egg contents indicates the possibility of transovarian infection of S. enteritidis in chickens. Some virulence factors associated with S. enteritidis are also reviewed in the present paper.
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Affiliation(s)
- S Suzuki
- National Veterinary Assay Laboratory, Ministry of Agriculture, Forestry and Fisheries, Tokyo, Japan
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