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For: Gallois B, Candelier R. FastTrack: An open-source software for tracking varying numbers of deformable objects. PLoS Comput Biol 2021;17:e1008697. [PMID: 33571205 DOI: 10.1371/journal.pcbi.1008697] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Revised: 02/24/2021] [Accepted: 01/10/2021] [Indexed: 11/23/2022]  Open
Number Cited by Other Article(s)
1
Bowser RM, Farman GP, Gregorio CC. Philament: A filament tracking program to quickly and accurately analyze in vitro motility assays. BIOPHYSICAL REPORTS 2024;4:100147. [PMID: 38404534 PMCID: PMC10884813 DOI: 10.1016/j.bpr.2024.100147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/24/2023] [Accepted: 01/25/2024] [Indexed: 02/27/2024]
2
Papaspyros V, Escobedo R, Alahi A, Theraulaz G, Sire C, Mondada F. Predicting the long-term collective behaviour of fish pairs with deep learning. J R Soc Interface 2024;21:20230630. [PMID: 38442859 PMCID: PMC10914514 DOI: 10.1098/rsif.2023.0630] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Accepted: 02/06/2024] [Indexed: 03/07/2024]  Open
3
Tanaka Y, Valentini G, Pratt SC, Shimoji H, Mizumoto N. Protocol to obtain long movement trajectories of leaders and followers in ant tandem runs. STAR Protoc 2023;4:102769. [PMID: 38060385 PMCID: PMC10783595 DOI: 10.1016/j.xpro.2023.102769] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2023] [Revised: 11/07/2023] [Accepted: 11/22/2023] [Indexed: 01/14/2024]  Open
4
Bai Y, Henry J, Cheng E, Perry S, Mawdsley D, Wong BBM, Kaslin J, Wlodkowic D. Toward Real-Time Animal Tracking with Integrated Stimulus Control for Automated Conditioning in Aquatic Eco-Neurotoxicology. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023;57:19453-19462. [PMID: 37956114 DOI: 10.1021/acs.est.3c07013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2023]
5
Xue T, Li X, Lin G, Escobedo R, Han Z, Chen X, Sire C, Theraulaz G. Tuning social interactions' strength drives collective response to light intensity in schooling fish. PLoS Comput Biol 2023;19:e1011636. [PMID: 37976299 PMCID: PMC10691717 DOI: 10.1371/journal.pcbi.1011636] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Revised: 12/01/2023] [Accepted: 10/26/2023] [Indexed: 11/19/2023]  Open
6
Rathore A, Sharma A, Shah S, Sharma N, Torney C, Guttal V. Multi-Object Tracking in Heterogeneous environments (MOTHe) for animal video recordings. PeerJ 2023;11:e15573. [PMID: 37397020 PMCID: PMC10309051 DOI: 10.7717/peerj.15573] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2022] [Accepted: 05/25/2023] [Indexed: 07/04/2023]  Open
7
Beiza-Canelo N, Moulle H, Pujol T, Panier T, Migault G, Le Goc G, Tapie P, Desprat N, Straka H, Debrégeas G, Bormuth V. Magnetic actuation of otoliths allows behavioral and brain-wide neuronal exploration of vestibulo-motor processing in larval zebrafish. Curr Biol 2023:S0960-9822(23)00621-8. [PMID: 37285844 DOI: 10.1016/j.cub.2023.05.026] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2022] [Revised: 11/23/2022] [Accepted: 05/11/2023] [Indexed: 06/09/2023]
8
Lafoux B, Moscatelli J, Godoy-Diana R, Thiria B. Illuminance-tuned collective motion in fish. Commun Biol 2023;6:585. [PMID: 37258699 DOI: 10.1038/s42003-023-04861-8] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Accepted: 04/21/2023] [Indexed: 06/02/2023]  Open
9
Malik H, Idris AS, Toha SF, Mohd Idris I, Daud MF, Azmi NL. A review of open-source image analysis tools for mammalian cell culture: algorithms, features and implementations. PeerJ Comput Sci 2023;9:e1364. [PMID: 37346656 PMCID: PMC10280419 DOI: 10.7717/peerj-cs.1364] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2022] [Accepted: 04/04/2023] [Indexed: 06/23/2023]
10
Escoubet N, Brette R, Pontani LL, Prevost AM. Interaction of the mechanosensitive microswimmer Paramecium with obstacles. ROYAL SOCIETY OPEN SCIENCE 2023;10:221645. [PMID: 37234495 PMCID: PMC10206458 DOI: 10.1098/rsos.221645] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Accepted: 04/25/2023] [Indexed: 05/28/2023]
11
Elices I, Kulkarni A, Escoubet N, Pontani LL, Prevost AM, Brette R. An electrophysiological and kinematic model of Paramecium, the "swimming neuron". PLoS Comput Biol 2023;19:e1010899. [PMID: 36758112 PMCID: PMC9946239 DOI: 10.1371/journal.pcbi.1010899] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2022] [Revised: 02/22/2023] [Accepted: 01/26/2023] [Indexed: 02/11/2023]  Open
12
Larbi MC, Messa G, Jalal H, Koutsikou S. An early midbrain sensorimotor pathway is involved in the timely initiation and direction of swimming in the hatchling Xenopus laevis tadpole. Front Neural Circuits 2022;16:1027831. [PMID: 36619662 PMCID: PMC9810627 DOI: 10.3389/fncir.2022.1027831] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2022] [Accepted: 11/25/2022] [Indexed: 12/24/2022]  Open
13
Gallois B, Pontani LL, Debrégeas G, Candelier R. A scalable assay for chemical preference of small freshwater fish. Front Behav Neurosci 2022;16:990792. [PMID: 36212190 PMCID: PMC9541871 DOI: 10.3389/fnbeh.2022.990792] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2022] [Accepted: 09/01/2022] [Indexed: 11/13/2022]  Open
14
Kappel JM, Förster D, Slangewal K, Shainer I, Svara F, Donovan JC, Sherman S, Januszewski M, Baier H, Larsch J. Visual recognition of social signals by a tectothalamic neural circuit. Nature 2022;608:146-152. [PMID: 35831500 PMCID: PMC9352588 DOI: 10.1038/s41586-022-04925-5] [Citation(s) in RCA: 42] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2021] [Accepted: 06/02/2022] [Indexed: 12/23/2022]
15
Bertram MG, Martin JM, McCallum ES, Alton LA, Brand JA, Brooks BW, Cerveny D, Fick J, Ford AT, Hellström G, Michelangeli M, Nakagawa S, Polverino G, Saaristo M, Sih A, Tan H, Tyler CR, Wong BB, Brodin T. Frontiers in quantifying wildlife behavioural responses to chemical pollution. Biol Rev Camb Philos Soc 2022;97:1346-1364. [PMID: 35233915 PMCID: PMC9543409 DOI: 10.1111/brv.12844] [Citation(s) in RCA: 60] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Revised: 02/13/2022] [Accepted: 02/16/2022] [Indexed: 12/26/2022]
16
Ray S, Stopfer MA. Argos: A toolkit for tracking multiple animals in complex visual environments. Methods Ecol Evol 2022;13:585-595. [PMID: 37920569 PMCID: PMC10621779 DOI: 10.1111/2041-210x.13776] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Accepted: 10/25/2021] [Indexed: 11/29/2022]
17
Kamkar S, Moghaddam HA, Lashgari R, Erlhagen W. Brain-inspired multiple-target tracking using Dynamic Neural Fields. Neural Netw 2022;151:121-131. [DOI: 10.1016/j.neunet.2022.03.026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2021] [Revised: 02/01/2022] [Accepted: 03/22/2022] [Indexed: 10/18/2022]
18
Goc GL, Lafaye J, Karpenko S, Bormuth V, Candelier R, Debrégeas G. Thermal modulation of Zebrafish exploratory statistics reveals constraints on individual behavioral variability. BMC Biol 2021;19:208. [PMID: 34548084 PMCID: PMC8456632 DOI: 10.1186/s12915-021-01126-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Accepted: 08/18/2021] [Indexed: 11/10/2022]  Open
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