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For: Jiang H, Guan W, Gu Z. Tinkering evolution of post-transcriptional RNA regulons: puf3p in fungi as an example. PLoS Genet 2010;6:e1001030. [PMID: 20661438 PMCID: PMC2908677 DOI: 10.1371/journal.pgen.1001030] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2009] [Accepted: 06/16/2010] [Indexed: 11/19/2022]  Open
Number Cited by Other Article(s)
1
Shao H, Huang J, Wang H, Wang G, Yang X, Cheng M, Sun C, Zou L, Yang Q, Zhang D, Liu Z, Jiang X, Shi L, Shi P, Han B, Jiao B. Fused in sarcoma (FUS) inhibits milk production efficiency in mammals. Nat Commun 2024;15:3953. [PMID: 38729967 PMCID: PMC11087553 DOI: 10.1038/s41467-024-48428-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2023] [Accepted: 04/25/2024] [Indexed: 05/12/2024]  Open
2
Fusarium oxysporum f. sp. niveum Pumilio 1 Regulates Virulence on Watermelon through Interacting with the ARP2/3 Complex and Binding to an A-Rich Motif in the 3' UTR of Diverse Transcripts. mBio 2023;14:e0015723. [PMID: 36856417 PMCID: PMC10128047 DOI: 10.1128/mbio.00157-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/02/2023]  Open
3
Schieweck R, Schöneweiss EC, Harner M, Rieger D, Illig C, Saccà B, Popper B, Kiebler MA. Pumilio2 Promotes Growth of Mature Neurons. Int J Mol Sci 2021;22:ijms22168998. [PMID: 34445704 PMCID: PMC8396670 DOI: 10.3390/ijms22168998] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Revised: 08/13/2021] [Accepted: 08/19/2021] [Indexed: 01/05/2023]  Open
4
Bhondeley M, Liu Z. Mitochondrial Biogenesis Is Positively Regulated by Casein Kinase I Hrr25 Through Phosphorylation of Puf3 in Saccharomyces cerevisiae. Genetics 2020;215:463-482. [PMID: 32317286 PMCID: PMC7268985 DOI: 10.1534/genetics.120.303191] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2019] [Accepted: 04/20/2020] [Indexed: 11/18/2022]  Open
5
Avendaño-Monsalve MC, Ponce-Rojas JC, Funes S. From cytosol to mitochondria: the beginning of a protein journey. Biol Chem 2020;401:645-661. [DOI: 10.1515/hsz-2020-0110] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2020] [Accepted: 02/24/2020] [Indexed: 01/18/2023]
6
Ramakrishnan A, Janga SC. Human protein-RNA interaction network is highly stable across mammals. BMC Genomics 2019;20:1004. [PMID: 31888461 PMCID: PMC6936122 DOI: 10.1186/s12864-019-6330-9] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
7
Kuang MC, Kominek J, Alexander WG, Cheng JF, Wrobel RL, Hittinger CT. Repeated Cis-Regulatory Tuning of a Metabolic Bottleneck Gene during Evolution. Mol Biol Evol 2019;35:1968-1981. [PMID: 29788479 PMCID: PMC6063270 DOI: 10.1093/molbev/msy102] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]  Open
8
Jarmoskaite I, Denny SK, Vaidyanathan PP, Becker WR, Andreasson JOL, Layton CJ, Kappel K, Shivashankar V, Sreenivasan R, Das R, Greenleaf WJ, Herschlag D. A Quantitative and Predictive Model for RNA Binding by Human Pumilio Proteins. Mol Cell 2019;74:966-981.e18. [PMID: 31078383 DOI: 10.1101/403006] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2018] [Revised: 01/31/2019] [Accepted: 04/05/2019] [Indexed: 05/20/2023]
9
Jarmoskaite I, Denny SK, Vaidyanathan PP, Becker WR, Andreasson JOL, Layton CJ, Kappel K, Shivashankar V, Sreenivasan R, Das R, Greenleaf WJ, Herschlag D. A Quantitative and Predictive Model for RNA Binding by Human Pumilio Proteins. Mol Cell 2019;74:966-981.e18. [PMID: 31078383 DOI: 10.1016/j.molcel.2019.04.012] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2018] [Revised: 01/31/2019] [Accepted: 04/05/2019] [Indexed: 01/09/2023]
10
Novel insights into global translational regulation through Pumilio family RNA-binding protein Puf3p revealed by ribosomal profiling. Curr Genet 2018;65:201-212. [PMID: 29951697 DOI: 10.1007/s00294-018-0862-4] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2018] [Revised: 06/16/2018] [Accepted: 06/19/2018] [Indexed: 01/13/2023]
11
Cheng J, Guo X, Cai P, Cheng X, Piškur J, Ma Y, Jiang H, Gu Z. Parallel Evolution of Chromatin Structure Underlying Metabolic Adaptation. Mol Biol Evol 2018;34:2870-2878. [PMID: 28961859 DOI: 10.1093/molbev/msx220] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
12
Clarifying results and prevailing models for the evolution of Puf proteins and their RNA targets. Proc Natl Acad Sci U S A 2017;114:E10853. [DOI: 10.1073/pnas.1716625114] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
13
Vincent T, Vingadassalon A, Ubrig E, Azeredo K, Srour O, Cognat V, Graindorge S, Salinas T, Maréchal-Drouard L, Duchêne AM. A genome-scale analysis of mRNAs targeting to plant mitochondria: upstream AUGs in 5' untranslated regions reduce mitochondrial association. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2017;92:1132-1142. [PMID: 29044717 DOI: 10.1111/tpj.13749] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2017] [Revised: 09/26/2017] [Accepted: 09/29/2017] [Indexed: 06/07/2023]
14
Bisogno LS, Keene JD. RNA regulons in cancer and inflammation. Curr Opin Genet Dev 2017;48:97-103. [PMID: 29175729 DOI: 10.1016/j.gde.2017.11.004] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2017] [Revised: 11/07/2017] [Accepted: 11/10/2017] [Indexed: 01/05/2023]
15
Verma-Gaur J, Traven A. Post-transcriptional gene regulation in the biology and virulence of Candida albicans. Cell Microbiol 2016;18:800-6. [PMID: 26999710 PMCID: PMC5074327 DOI: 10.1111/cmi.12593] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2016] [Revised: 02/28/2016] [Accepted: 03/16/2016] [Indexed: 11/27/2022]
16
Sun X, Wang Z, Guo X, Li H, Gu Z. Coordinated Evolution of Transcriptional and Post-Transcriptional Regulation for Mitochondrial Functions in Yeast Strains. PLoS One 2016;11:e0153523. [PMID: 27077367 PMCID: PMC4831757 DOI: 10.1371/journal.pone.0153523] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2016] [Accepted: 03/30/2016] [Indexed: 11/19/2022]  Open
17
Morphotype-specific effector functions of Cryptococcus neoformans PUM1. Sci Rep 2016;6:23638. [PMID: 27008977 PMCID: PMC4806291 DOI: 10.1038/srep23638] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2015] [Accepted: 03/11/2016] [Indexed: 11/18/2022]  Open
18
Hogan GJ, Brown PO, Herschlag D. Evolutionary Conservation and Diversification of Puf RNA Binding Proteins and Their mRNA Targets. PLoS Biol 2015;13:e1002307. [PMID: 26587879 PMCID: PMC4654594 DOI: 10.1371/journal.pbio.1002307] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2015] [Accepted: 10/23/2015] [Indexed: 12/31/2022]  Open
19
Verma-Gaur J, Qu Y, Harrison PF, Lo TL, Quenault T, Dagley MJ, Bellousoff M, Powell DR, Beilharz TH, Traven A. Integration of Posttranscriptional Gene Networks into Metabolic Adaptation and Biofilm Maturation in Candida albicans. PLoS Genet 2015;11:e1005590. [PMID: 26474309 PMCID: PMC4608769 DOI: 10.1371/journal.pgen.1005590] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2015] [Accepted: 09/17/2015] [Indexed: 11/19/2022]  Open
20
Puf4 regulates both splicing and decay of HXL1 mRNA encoding the unfolded protein response transcription factor in Cryptococcus neoformans. EUKARYOTIC CELL 2015;14:385-95. [PMID: 25681267 DOI: 10.1128/ec.00273-14] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2014] [Accepted: 01/30/2015] [Indexed: 11/20/2022]
21
Jiang H, Xu L, Wang Z, Keene J, Gu Z. Coordinating expression of RNA binding proteins with their mRNA targets. Sci Rep 2014;4:7175. [PMID: 25417751 PMCID: PMC4241525 DOI: 10.1038/srep07175] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2014] [Accepted: 11/04/2014] [Indexed: 11/09/2022]  Open
22
Blackinton JG, Keene JD. Post-transcriptional RNA regulons affecting cell cycle and proliferation. Semin Cell Dev Biol 2014;34:44-54. [PMID: 24882724 PMCID: PMC4163074 DOI: 10.1016/j.semcdb.2014.05.014] [Citation(s) in RCA: 83] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2014] [Accepted: 05/21/2014] [Indexed: 01/19/2023]
23
Wang L, Tian X, Gyawali R, Upadhyay S, Foyle D, Wang G, Cai JJ, Lin X. Morphotype transition and sexual reproduction are genetically associated in a ubiquitous environmental pathogen. PLoS Pathog 2014;10:e1004185. [PMID: 24901238 PMCID: PMC4047104 DOI: 10.1371/journal.ppat.1004185] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2014] [Accepted: 04/30/2014] [Indexed: 11/18/2022]  Open
24
Miller MA, Russo J, Fischer AD, Lopez Leban FA, Olivas WM. Carbon source-dependent alteration of Puf3p activity mediates rapid changes in the stabilities of mRNAs involved in mitochondrial function. Nucleic Acids Res 2013;42:3954-70. [PMID: 24371272 PMCID: PMC3973295 DOI: 10.1093/nar/gkt1346] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]  Open
25
Weil D, Hollien J. Cytoplasmic organelles on the road to mRNA decay. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 2013;1829:725-31. [PMID: 23337852 DOI: 10.1016/j.bbagrm.2013.01.002] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2012] [Revised: 01/02/2013] [Accepted: 01/03/2013] [Indexed: 11/27/2022]
26
Jiang H, Guo X, Xu L, Gu Z. Rewiring of posttranscriptional RNA regulons: Puf4p in fungi as an example. Mol Biol Evol 2012;29:2169-76. [PMID: 22438588 DOI: 10.1093/molbev/mss085] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]  Open
27
Lelandais G, Goudot C, Devaux F. The evolution of gene expression regulatory networks in yeasts. C R Biol 2011;334:655-61. [PMID: 21819947 DOI: 10.1016/j.crvi.2011.05.014] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2010] [Accepted: 03/02/2011] [Indexed: 12/20/2022]
28
Ccr4 promotes resolution of the endoplasmic reticulum stress response during host temperature adaptation in Cryptococcus neoformans. EUKARYOTIC CELL 2011;10:895-901. [PMID: 21602483 DOI: 10.1128/ec.00006-11] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
29
Hayashi M, Schilke B, Marszalek J, Williams B, Craig EA. Ancient gene duplication provided a key molecular step for anaerobic growth of Baker's yeast. Mol Biol Evol 2011;28:2005-17. [PMID: 21245414 DOI: 10.1093/molbev/msr019] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]  Open
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