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For: Croll D, Zala M, McDonald BA. Breakage-fusion-bridge cycles and large insertions contribute to the rapid evolution of accessory chromosomes in a fungal pathogen. PLoS Genet 2013;9:e1003567. [PMID: 23785303 DOI: 10.1371/journal.pgen.1003567] [Citation(s) in RCA: 109] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2012] [Accepted: 05/01/2013] [Indexed: 12/12/2022]  Open
Number Cited by Other Article(s)
1
Guo J, Shi G, Islam MM, Kariyawasam G, Moolhuijzen P, See PT, Zhong S, Aboukhaddour R, Faris JD, Friesen T, Liu Z. Identification of a novel genetic locus conferring virulence in the wheat tan spot pathogen Pyrenophora tritici-repentis. Fungal Genet Biol 2025;179:104002. [PMID: 40383413 DOI: 10.1016/j.fgb.2025.104002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2025] [Revised: 05/12/2025] [Accepted: 05/13/2025] [Indexed: 05/20/2025]
2
Oggenfuss U, Todd RT, Soisangwan N, Kemp B, Guyer A, Beach A, Selmecki A. Candida albicans isolates contain frequent heterozygous structural variants and transposable elements within genes and centromeres. Genome Res 2025;35:824-838. [PMID: 39438112 PMCID: PMC12047244 DOI: 10.1101/gr.279301.124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2024] [Accepted: 10/21/2024] [Indexed: 10/25/2024]
3
Fagundes WC, Huang YS, Häußler S, Langner T. From Lesions to Lessons: Two Decades of Filamentous Plant Pathogen Genomics. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2025;38:187-205. [PMID: 39813026 DOI: 10.1094/mpmi-09-24-0115-fi] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/16/2025]
4
Jay A, Jordan DF, Gerstein A, Landry CR. The role of gene copy number variation in antimicrobial resistance in human fungal pathogens. NPJ ANTIMICROBIALS AND RESISTANCE 2025;3:1. [PMID: 39781035 PMCID: PMC11703754 DOI: 10.1038/s44259-024-00072-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/25/2024] [Accepted: 12/05/2024] [Indexed: 01/11/2025]
5
Jones DAB, Rybak K, Hossain M, Bertazzoni S, Williams A, Tan KC, Phan HTT, Hane JK. Repeat-induced point mutations driving Parastagonospora nodorum genomic diversity are balanced by selection against non-synonymous mutations. Commun Biol 2024;7:1614. [PMID: 39627497 PMCID: PMC11615325 DOI: 10.1038/s42003-024-07327-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Accepted: 11/27/2024] [Indexed: 12/06/2024]  Open
6
Gyawali N, Hao Y, Lin G, Huang J, Bika R, Daza L, Zheng H, Cruppe G, Caragea D, Cook D, Valent B, Liu S. Using recurrent neural networks to detect supernumerary chromosomes in fungal strains causing blast diseases. NAR Genom Bioinform 2024;6:lqae108. [PMID: 39165675 PMCID: PMC11333962 DOI: 10.1093/nargab/lqae108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Revised: 06/27/2024] [Accepted: 08/06/2024] [Indexed: 08/22/2024]  Open
7
Lapalu N, Simon A, Lu A, Plaumann PL, Amselem J, Pigné S, Auger A, Koch C, Dallery JF, O'Connell RJ. Complete genome of the Medicago anthracnose fungus, Colletotrichum destructivum, reveals a mini-chromosome-like region within a core chromosome. Microb Genom 2024;10:001283. [PMID: 39166978 PMCID: PMC11338638 DOI: 10.1099/mgen.0.001283] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Accepted: 07/22/2024] [Indexed: 08/23/2024]  Open
8
Tralamazza SM, Gluck-Thaler E, Feurtey A, Croll D. Copy number variation introduced by a massive mobile element facilitates global thermal adaptation in a fungal wheat pathogen. Nat Commun 2024;15:5728. [PMID: 38977688 PMCID: PMC11231334 DOI: 10.1038/s41467-024-49913-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2023] [Accepted: 06/25/2024] [Indexed: 07/10/2024]  Open
9
Cissé OH, Ma L, Kovacs JA. Retracing the evolution of Pneumocystis species, with a focus on the human pathogen Pneumocystis jirovecii. Microbiol Mol Biol Rev 2024;88:e0020222. [PMID: 38587383 PMCID: PMC11332345 DOI: 10.1128/mmbr.00202-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/09/2024]  Open
10
van Westerhoven AC, Aguilera-Galvez C, Nakasato-Tagami G, Shi-Kunne X, Martinez de la Parte E, Chavarro-Carrero E, Meijer HJG, Feurtey A, Maryani N, Ordóñez N, Schneiders H, Nijbroek K, Wittenberg AHJ, Hofstede R, García-Bastidas F, Sørensen A, Swennen R, Drenth A, Stukenbrock EH, Kema GHJ, Seidl MF. Segmental duplications drive the evolution of accessory regions in a major crop pathogen. THE NEW PHYTOLOGIST 2024;242:610-625. [PMID: 38402521 DOI: 10.1111/nph.19604] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2023] [Accepted: 02/01/2024] [Indexed: 02/26/2024]
11
Habig M, Grasse AV, Müller J, Stukenbrock EH, Leitner H, Cremer S. Frequent horizontal chromosome transfer between asexual fungal insect pathogens. Proc Natl Acad Sci U S A 2024;121:e2316284121. [PMID: 38442176 PMCID: PMC10945790 DOI: 10.1073/pnas.2316284121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Accepted: 01/24/2024] [Indexed: 03/07/2024]  Open
12
Liu S, Lin G, Ramachandran SR, Daza LC, Cruppe G, Tembo B, Singh PK, Cook D, Pedley KF, Valent B. Rapid mini-chromosome divergence among fungal isolates causing wheat blast outbreaks in Bangladesh and Zambia. THE NEW PHYTOLOGIST 2024;241:1266-1276. [PMID: 37984076 DOI: 10.1111/nph.19402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2023] [Accepted: 10/27/2023] [Indexed: 11/22/2023]
13
Kamble A, Michavila S, Gimenez-Ibanez S, Redkar A. Shared infection strategy of a fungal pathogen across diverse lineages of land plants, the Fusarium example. CURRENT OPINION IN PLANT BIOLOGY 2024;77:102498. [PMID: 38142620 DOI: 10.1016/j.pbi.2023.102498] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Revised: 11/30/2023] [Accepted: 11/30/2023] [Indexed: 12/26/2023]
14
Zaccaron AZ, Stergiopoulos I. Analysis of five near-complete genome assemblies of the tomato pathogen Cladosporium fulvum uncovers additional accessory chromosomes and structural variations induced by transposable elements effecting the loss of avirulence genes. BMC Biol 2024;22:25. [PMID: 38281938 PMCID: PMC10823647 DOI: 10.1186/s12915-024-01818-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Accepted: 01/04/2024] [Indexed: 01/30/2024]  Open
15
Stapley J, McDonald BA. Quantitative trait locus mapping of osmotic stress response in the fungal wheat pathogen Zymoseptoria tritici. G3 (BETHESDA, MD.) 2023;13:jkad226. [PMID: 37774498 PMCID: PMC10700024 DOI: 10.1093/g3journal/jkad226] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Revised: 09/19/2023] [Accepted: 09/20/2023] [Indexed: 10/01/2023]
16
Bernasconi A, Lorrain C, Flury P, Alassimone J, McDonald BA, Sánchez-Vallet A. Virulent strains of Zymoseptoria tritici suppress the host immune response and facilitate the success of avirulent strains in mixed infections. PLoS Pathog 2023;19:e1011767. [PMID: 37972205 PMCID: PMC10721197 DOI: 10.1371/journal.ppat.1011767] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Revised: 12/14/2023] [Accepted: 10/19/2023] [Indexed: 11/19/2023]  Open
17
Sugihara Y, Abe Y, Takagi H, Abe A, Shimizu M, Ito K, Kanzaki E, Oikawa K, Kourelis J, Langner T, Win J, Białas A, Lüdke D, Contreras MP, Chuma I, Saitoh H, Kobayashi M, Zheng S, Tosa Y, Banfield MJ, Kamoun S, Terauchi R, Fujisaki K. Disentangling the complex gene interaction networks between rice and the blast fungus identifies a new pathogen effector. PLoS Biol 2023;21:e3001945. [PMID: 36656825 PMCID: PMC9851567 DOI: 10.1371/journal.pbio.3001945] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Accepted: 12/05/2022] [Indexed: 01/20/2023]  Open
18
Fraser CJ, Whitehall SK. Heterochromatin in the fungal plant pathogen, Zymoseptoria tritici: Control of transposable elements, genome plasticity and virulence. Front Genet 2022;13:1058741. [DOI: 10.3389/fgene.2022.1058741] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Accepted: 11/04/2022] [Indexed: 11/22/2022]  Open
19
Bergin SA, Zhao F, Ryan AP, Müller CA, Nieduszynski CA, Zhai B, Rolling T, Hohl TM, Morio F, Scully J, Wolfe KH, Butler G. Systematic Analysis of Copy Number Variations in the Pathogenic Yeast Candida parapsilosis Identifies a Gene Amplification in RTA3 That is Associated with Drug Resistance. mBio 2022;13:e0177722. [PMID: 36121151 PMCID: PMC9600344 DOI: 10.1128/mbio.01777-22] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Accepted: 08/31/2022] [Indexed: 01/12/2023]  Open
20
Kilaru S, Fantozzi E, Cannon S, Schuster M, Chaloner TM, Guiu-Aragones C, Gurr SJ, Steinberg G. Zymoseptoria tritici white-collar complex integrates light, temperature and plant cues to initiate dimorphism and pathogenesis. Nat Commun 2022;13:5625. [PMID: 36163135 PMCID: PMC9512790 DOI: 10.1038/s41467-022-33183-2] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2021] [Accepted: 09/07/2022] [Indexed: 11/08/2022]  Open
21
Bernasconi A, Alassimone J, McDonald BA, Sánchez‐Vallet A. Asexual reproductive potential trumps virulence as a predictor of competitive ability in mixed infections. Environ Microbiol 2022;24:4369-4381. [PMID: 35437879 PMCID: PMC9790533 DOI: 10.1111/1462-2920.16018] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2021] [Accepted: 04/13/2022] [Indexed: 12/30/2022]
22
McDonald BA, Suffert F, Bernasconi A, Mikaberidze A. How large and diverse are field populations of fungal plant pathogens? The case of Zymoseptoria tritici. Evol Appl 2022;15:1360-1373. [PMID: 36187182 PMCID: PMC9488677 DOI: 10.1111/eva.13434] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Revised: 05/28/2022] [Accepted: 06/06/2022] [Indexed: 12/02/2022]  Open
23
Xia C, Qiu A, Wang M, Liu T, Chen W, Chen X. Current Status and Future Perspectives of Genomics Research in the Rust Fungi. Int J Mol Sci 2022;23:9629. [PMID: 36077025 PMCID: PMC9456177 DOI: 10.3390/ijms23179629] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Revised: 08/22/2022] [Accepted: 08/22/2022] [Indexed: 11/16/2022]  Open
24
Montezano Fernandes F, Vieira de Queiroz M, Lopes da Silva L, Maria Queiroz Azevedo D, Luis Badel J, Couto Alfenas A. Chromosomal polymorphism of the Ceratocystis fimbriata species complex in Brazil. Fungal Genet Biol 2022;162:103728. [PMID: 35932991 DOI: 10.1016/j.fgb.2022.103728] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2021] [Revised: 07/15/2022] [Accepted: 07/23/2022] [Indexed: 11/04/2022]
25
Komluski J, Stukenbrock EH, Habig M. Non-Mendelian transmission of accessory chromosomes in fungi. Chromosome Res 2022;30:241-253. [PMID: 35881207 PMCID: PMC9508043 DOI: 10.1007/s10577-022-09691-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Revised: 03/15/2022] [Accepted: 04/11/2022] [Indexed: 11/27/2022]
26
Redkar A, Sabale M, Zuccaro A, Di Pietro A. Determinants of endophytic and pathogenic lifestyle in root colonizing fungi. CURRENT OPINION IN PLANT BIOLOGY 2022;67:102226. [PMID: 35526366 DOI: 10.1016/j.pbi.2022.102226] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2022] [Revised: 03/28/2022] [Accepted: 03/30/2022] [Indexed: 06/14/2023]
27
Shi G, Kariyawasam G, Liu S, Leng Y, Zhong S, Ali S, Moolhuijzen P, Moffat CS, Rasmussen JB, Friesen TL, Faris JD, Liu Z. A Conserved Hypothetical Gene Is Required but Not Sufficient for Ptr ToxC Production in Pyrenophora tritici-repentis. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2022;35:336-348. [PMID: 35100008 DOI: 10.1094/mpmi-12-21-0299-r] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
28
Witte TE, Overy DP. Untargeted Metabolomic Profiling of Fungal Species Populations. Methods Mol Biol 2022;2456:349-365. [PMID: 35612754 DOI: 10.1007/978-1-0716-2124-0_24] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
29
Epigenetic modifications affect the rate of spontaneous mutations in a pathogenic fungus. Nat Commun 2021;12:5869. [PMID: 34620872 PMCID: PMC8497519 DOI: 10.1038/s41467-021-26108-y] [Citation(s) in RCA: 40] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Accepted: 09/17/2021] [Indexed: 12/17/2022]  Open
30
Oggenfuss U, Badet T, Wicker T, Hartmann FE, Singh NK, Abraham L, Karisto P, Vonlanthen T, Mundt C, McDonald BA, Croll D. A population-level invasion by transposable elements triggers genome expansion in a fungal pathogen. eLife 2021;10:e69249. [PMID: 34528512 PMCID: PMC8445621 DOI: 10.7554/elife.69249] [Citation(s) in RCA: 40] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Accepted: 08/28/2021] [Indexed: 12/16/2022]  Open
31
Fan Y, Gale AN, Bailey A, Barnes K, Colotti K, Mass M, Morina LB, Robertson B, Schwab R, Tselepidakis N, Timp W. Genome and transcriptome of a pathogenic yeast, Candida nivariensis. G3 (BETHESDA, MD.) 2021;11:jkab137. [PMID: 33890630 PMCID: PMC8496292 DOI: 10.1093/g3journal/jkab137] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/05/2021] [Accepted: 04/11/2021] [Indexed: 11/14/2022]
32
Badet T, Fouché S, Hartmann FE, Zala M, Croll D. Machine-learning predicts genomic determinants of meiosis-driven structural variation in a eukaryotic pathogen. Nat Commun 2021;12:3551. [PMID: 34112792 PMCID: PMC8192914 DOI: 10.1038/s41467-021-23862-x] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2020] [Accepted: 05/11/2021] [Indexed: 02/05/2023]  Open
33
Kariyawasam GK, Wyatt N, Shi G, Liu S, Yan C, Ma Y, Zhong S, Rasmussen JB, Moolhuijzen P, Moffat CS, Friesen TL, Liu Z. A genome-wide genetic linkage map and reference quality genome sequence for a new race in the wheat pathogen Pyrenophora tritici-repentis. Fungal Genet Biol 2021;152:103571. [PMID: 34015431 DOI: 10.1016/j.fgb.2021.103571] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2020] [Revised: 02/23/2021] [Accepted: 03/01/2021] [Indexed: 10/21/2022]
34
Witte TE, Villeneuve N, Boddy CN, Overy DP. Accessory Chromosome-Acquired Secondary Metabolism in Plant Pathogenic Fungi: The Evolution of Biotrophs Into Host-Specific Pathogens. Front Microbiol 2021;12:664276. [PMID: 33968000 PMCID: PMC8102738 DOI: 10.3389/fmicb.2021.664276] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2021] [Accepted: 03/09/2021] [Indexed: 11/25/2022]  Open
35
Dutta A, Croll D, McDonald BA, Barrett LG. Maintenance of variation in virulence and reproduction in populations of an agricultural plant pathogen. Evol Appl 2021;14:335-347. [PMID: 33664780 PMCID: PMC7896723 DOI: 10.1111/eva.13117] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2020] [Revised: 07/04/2020] [Accepted: 08/13/2020] [Indexed: 11/27/2022]  Open
36
Li J, Fokkens L, Conneely LJ, Rep M. Partial pathogenicity chromosomes in Fusarium oxysporum are sufficient to cause disease and can be horizontally transferred. Environ Microbiol 2020;22:4985-5004. [PMID: 32452643 PMCID: PMC7818268 DOI: 10.1111/1462-2920.15095] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2020] [Revised: 05/13/2020] [Accepted: 05/21/2020] [Indexed: 01/05/2023]
37
Yang H, Yu H, Ma LJ. Accessory Chromosomes in Fusarium oxysporum. PHYTOPATHOLOGY 2020;110:1488-1496. [PMID: 32692281 PMCID: PMC8086798 DOI: 10.1094/phyto-03-20-0069-ia] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
38
Todd RT, Selmecki A. Expandable and reversible copy number amplification drives rapid adaptation to antifungal drugs. eLife 2020;9:e58349. [PMID: 32687060 PMCID: PMC7371428 DOI: 10.7554/elife.58349] [Citation(s) in RCA: 82] [Impact Index Per Article: 16.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2020] [Accepted: 07/09/2020] [Indexed: 12/13/2022]  Open
39
Fones HN, Bebber DP, Chaloner TM, Kay WT, Steinberg G, Gurr SJ. Threats to global food security from emerging fungal and oomycete crop pathogens. ACTA ACUST UNITED AC 2020;1:332-342. [PMID: 37128085 DOI: 10.1038/s43016-020-0075-0] [Citation(s) in RCA: 227] [Impact Index Per Article: 45.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2019] [Accepted: 04/09/2020] [Indexed: 11/09/2022]
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Plaumann PL, Koch C. The Many Questions about Mini Chromosomes in Colletotrichum spp. PLANTS 2020;9:plants9050641. [PMID: 32438596 PMCID: PMC7284448 DOI: 10.3390/plants9050641] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/31/2020] [Revised: 05/08/2020] [Accepted: 05/14/2020] [Indexed: 11/16/2022]
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Hovhannisyan H, Saus E, Ksiezopolska E, Hinks Roberts AJ, Louis EJ, Gabaldón T. Integrative Omics Analysis Reveals a Limited Transcriptional Shock After Yeast Interspecies Hybridization. Front Genet 2020;11:404. [PMID: 32457798 PMCID: PMC7221068 DOI: 10.3389/fgene.2020.00404] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2020] [Accepted: 03/30/2020] [Indexed: 12/30/2022]  Open
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Badet T, Oggenfuss U, Abraham L, McDonald BA, Croll D. A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici. BMC Biol 2020;18:12. [PMID: 32046716 PMCID: PMC7014611 DOI: 10.1186/s12915-020-0744-3] [Citation(s) in RCA: 82] [Impact Index Per Article: 16.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2019] [Accepted: 01/27/2020] [Indexed: 12/16/2022]  Open
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Badet T, Oggenfuss U, Abraham L, McDonald BA, Croll D. A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici. BMC Biol 2020;18:12. [PMID: 32046716 DOI: 10.1101/803098] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2019] [Accepted: 01/27/2020] [Indexed: 05/26/2023]  Open
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Fouché S, Badet T, Oggenfuss U, Plissonneau C, Francisco CS, Croll D. Stress-Driven Transposable Element De-repression Dynamics and Virulence Evolution in a Fungal Pathogen. Mol Biol Evol 2020;37:221-239. [PMID: 31553475 DOI: 10.1093/molbev/msz216] [Citation(s) in RCA: 57] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]  Open
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Wyatt NA, Richards JK, Brueggeman RS, Friesen TL. A Comparative Genomic Analysis of the Barley Pathogen Pyrenophora teres f. teres Identifies Subtelomeric Regions as Drivers of Virulence. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2020;33:173-188. [PMID: 31502507 DOI: 10.1094/mpmi-05-19-0128-r] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
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van Wyk S, Wingfield BD, De Vos L, van der Merwe NA, Santana QC, Steenkamp ET. Repeat-Induced Point Mutations Drive Divergence between Fusarium circinatum and Its Close Relatives. Pathogens 2019;8:pathogens8040298. [PMID: 31847413 PMCID: PMC6963459 DOI: 10.3390/pathogens8040298] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2019] [Revised: 12/06/2019] [Accepted: 12/09/2019] [Indexed: 01/01/2023]  Open
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Feurtey A, Stevens DM, Stephan W, Stukenbrock EH. Interspecific Gene Exchange Introduces High Genetic Variability in Crop Pathogen. Genome Biol Evol 2019;11:3095-3105. [PMID: 31603209 PMCID: PMC6836716 DOI: 10.1093/gbe/evz224] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/08/2019] [Indexed: 12/27/2022]  Open
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Wang M, Fu H, Shen X, Ruan R, Rokas A, Li H. Genomic features and evolution of the conditionally dispensable chromosome in the tangerine pathotype of Alternaria alternata. MOLECULAR PLANT PATHOLOGY 2019;20:1425-1438. [PMID: 31297970 PMCID: PMC6792136 DOI: 10.1111/mpp.12848] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
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Peng Z, Oliveira-Garcia E, Lin G, Hu Y, Dalby M, Migeon P, Tang H, Farman M, Cook D, White FF, Valent B, Liu S. Effector gene reshuffling involves dispensable mini-chromosomes in the wheat blast fungus. PLoS Genet 2019;15:e1008272. [PMID: 31513573 PMCID: PMC6741851 DOI: 10.1371/journal.pgen.1008272] [Citation(s) in RCA: 75] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Accepted: 06/24/2019] [Indexed: 11/28/2022]  Open
50
Peng Z, Oliveira-Garcia E, Lin G, Hu Y, Dalby M, Migeon P, Tang H, Farman M, Cook D, White FF, Valent B, Liu S. Effector gene reshuffling involves dispensable mini-chromosomes in the wheat blast fungus. PLoS Genet 2019;15:e1008272. [PMID: 31513573 DOI: 10.1101/359455] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Accepted: 06/24/2019] [Indexed: 05/26/2023]  Open
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