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For: Gamba P, Jonker MJ, Hamoen LW. A Novel Feedback Loop That Controls Bimodal Expression of Genetic Competence. PLoS Genet 2015;11:e1005047. [PMID: 26110430 PMCID: PMC4482431 DOI: 10.1371/journal.pgen.1005047] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2014] [Accepted: 02/01/2015] [Indexed: 01/25/2023]  Open
Number Cited by Other Article(s)
1
Bean EL, Smith JL, Grossman AD. Identification of insertion sites for the integrative and conjugative element Tn916 in the Bacillus subtilis chromosome. PLoS One 2025;20:e0318964. [PMID: 40378350 PMCID: PMC12084037 DOI: 10.1371/journal.pone.0318964] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2025] [Accepted: 04/14/2025] [Indexed: 05/18/2025]  Open
2
Baptista ISC, Dash S, Arsh AM, Kandavalli V, Scandolo CM, Sanders BC, Ribeiro AS. Bimodality in E. coli gene expression: Sources and robustness to genome-wide stresses. PLoS Comput Biol 2025;21:e1012817. [PMID: 39946496 PMCID: PMC11825099 DOI: 10.1371/journal.pcbi.1012817] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2024] [Accepted: 01/22/2025] [Indexed: 02/17/2025]  Open
3
Hong L, Zhang Z, Wang Z, Yu X, Zhang J. Phase separation provides a mechanism to drive phenotype switching. Phys Rev E 2024;109:064414. [PMID: 39021038 DOI: 10.1103/physreve.109.064414] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2024] [Accepted: 06/05/2024] [Indexed: 07/20/2024]
4
Lawaetz AC, Cowley LA, Denham EL. Genome-wide annotation of transcript boundaries using bacterial Rend-seq datasets. Microb Genom 2024;10. [PMID: 38668652 DOI: 10.1099/mgen.0.001239] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/16/2024]  Open
5
Morreale FE, Kleine S, Leodolter J, Junker S, Hoi DM, Ovchinnikov S, Okun A, Kley J, Kurzbauer R, Junk L, Guha S, Podlesainski D, Kazmaier U, Boehmelt G, Weinstabl H, Rumpel K, Schmiedel VM, Hartl M, Haselbach D, Meinhart A, Kaiser M, Clausen T. BacPROTACs mediate targeted protein degradation in bacteria. Cell 2022;185:2338-2353.e18. [PMID: 35662409 PMCID: PMC9240326 DOI: 10.1016/j.cell.2022.05.009] [Citation(s) in RCA: 86] [Impact Index Per Article: 28.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Revised: 03/15/2022] [Accepted: 05/10/2022] [Indexed: 12/14/2022]
6
Pi H, Weiss A, Laut CL, Grunenwald CM, Lin HK, Yi XI, Stauff DL, Skaar EP. An RNA-binding protein acts as a major post-transcriptional modulator in Bacillus anthracis. Nat Commun 2022;13:1491. [PMID: 35314695 PMCID: PMC8938561 DOI: 10.1038/s41467-022-29209-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Accepted: 03/01/2022] [Indexed: 12/28/2022]  Open
7
Deng A, Sun Z, Wang T, Cui D, Li L, Liu S, Huang F, Wen T. Simultaneous Multiplex Genome Engineering via Accelerated Natural Transformation in Bacillus subtilis. Front Microbiol 2021;12:714449. [PMID: 34484154 PMCID: PMC8416114 DOI: 10.3389/fmicb.2021.714449] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2021] [Accepted: 07/23/2021] [Indexed: 11/13/2022]  Open
8
Benda M, Schulz LM, Stülke J, Rismondo J. Influence of the ABC Transporter YtrBCDEF of Bacillus subtilis on Competence, Biofilm Formation and Cell Wall Thickness. Front Microbiol 2021;12:587035. [PMID: 33897624 PMCID: PMC8060467 DOI: 10.3389/fmicb.2021.587035] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2020] [Accepted: 03/15/2021] [Indexed: 11/13/2022]  Open
9
Different resource allocation in a Bacillus subtilis population displaying bimodal motility. J Bacteriol 2021;203:e0003721. [PMID: 33782055 DOI: 10.1128/jb.00037-21] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]  Open
10
Silale A, Lea SM, Berks BC. The DNA transporter ComEC has metal-dependent nuclease activity that is important for natural transformation. Mol Microbiol 2021;116:416-426. [PMID: 33772889 PMCID: PMC8579336 DOI: 10.1111/mmi.14720] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2021] [Revised: 03/22/2021] [Accepted: 03/23/2021] [Indexed: 12/25/2022]
11
Likhoshvai VA, Golubyatnikov VP, Khlebodarova TM. Limit cycles in models of circular gene networks regulated by negative feedback loops. BMC Bioinformatics 2020;21:255. [PMID: 32921311 PMCID: PMC7488683 DOI: 10.1186/s12859-020-03598-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2020] [Accepted: 06/10/2020] [Indexed: 12/30/2022]  Open
12
Boonstra M, Schaffer M, Sousa J, Morawska L, Holsappel S, Hildebrandt P, Sappa PK, Rath H, de Jong A, Lalk M, Mäder U, Völker U, Kuipers OP. Analyses of competent and non-competent subpopulations of Bacillus subtilis reveal yhfW, yhxC and ncRNAs as novel players in competence. Environ Microbiol 2020;22:2312-2328. [PMID: 32249531 PMCID: PMC7317962 DOI: 10.1111/1462-2920.15005] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2019] [Accepted: 03/29/2020] [Indexed: 11/28/2022]
13
Menn D, Sochor P, Goetz H, Tian XJ, Wang X. Intracellular Noise Level Determines Ratio Control Strategy Confined by Speed-Accuracy Trade-off. ACS Synth Biol 2019;8:1352-1360. [PMID: 31083890 DOI: 10.1021/acssynbio.9b00030] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
14
Wu G, Drufva E, Wu K. Fast genome editing in Bacillus subtilis. Eng Life Sci 2019;19:471-477. [PMID: 32625024 DOI: 10.1002/elsc.201800164] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2018] [Revised: 03/21/2019] [Accepted: 04/24/2019] [Indexed: 11/08/2022]  Open
15
Genome-Wide Characterization of the Fur Regulatory Network Reveals a Link between Catechol Degradation and Bacillibactin Metabolism in Bacillus subtilis. mBio 2018;9:mBio.01451-18. [PMID: 30377275 PMCID: PMC6212828 DOI: 10.1128/mbio.01451-18] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
16
Kaspar J, Shields RC, Burne RA. Competence inhibition by the XrpA peptide encoded within the comX gene of Streptococcus mutans. Mol Microbiol 2018;109:345-364. [PMID: 29802741 DOI: 10.1111/mmi.13989] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/16/2018] [Indexed: 01/06/2023]
17
Sauer C, Ver Loren van Themaat E, Boender LGM, Groothuis D, Cruz R, Hamoen LW, Harwood CR, van Rij T. Exploring the Nonconserved Sequence Space of Synthetic Expression Modules in Bacillus subtilis. ACS Synth Biol 2018;7:1773-1784. [PMID: 29939720 DOI: 10.1021/acssynbio.8b00110] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
18
Fang X, Liu Q, Bohrer C, Hensel Z, Han W, Wang J, Xiao J. Cell fate potentials and switching kinetics uncovered in a classic bistable genetic switch. Nat Commun 2018;9:2787. [PMID: 30018349 PMCID: PMC6050291 DOI: 10.1038/s41467-018-05071-1] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2018] [Accepted: 04/17/2018] [Indexed: 11/13/2022]  Open
19
The Conserved DNA Binding Protein WhiA Influences Chromosome Segregation in Bacillus subtilis. J Bacteriol 2018;200:JB.00633-17. [PMID: 29378890 DOI: 10.1128/jb.00633-17] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2017] [Accepted: 01/22/2018] [Indexed: 11/20/2022]  Open
20
Zou X, Ren Z, Wang N, Cheng Y, Jiang Y, Wang Y, Xu C. Function analysis of 5'-UTR of the cellulosomal xyl-doc cluster in Clostridium papyrosolvens. BIOTECHNOLOGY FOR BIOFUELS 2018;11:43. [PMID: 29467821 PMCID: PMC5815224 DOI: 10.1186/s13068-018-1040-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2017] [Accepted: 02/02/2018] [Indexed: 05/04/2023]
21
Yaseen Y, Diop A, Gancel F, Béchet M, Jacques P, Drider D. Polynucleotide phosphorylase is involved in the control of lipopeptide fengycin production in Bacillus subtilis. Arch Microbiol 2018;200:783-791. [PMID: 29423562 DOI: 10.1007/s00203-018-1483-5] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2017] [Revised: 01/18/2018] [Accepted: 01/23/2018] [Indexed: 10/18/2022]
22
Diethmaier C, Chawla R, Canzoneri A, Kearns DB, Lele PP, Dubnau D. Viscous drag on the flagellum activates Bacillus subtilis entry into the K-state. Mol Microbiol 2017;106:367-380. [PMID: 28800172 DOI: 10.1111/mmi.13770] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/08/2017] [Indexed: 12/23/2022]
23
The heterocyst regulatory protein HetP and its homologs modulate heterocyst commitment in Anabaena sp. strain PCC 7120. Proc Natl Acad Sci U S A 2016;113:E6984-E6992. [PMID: 27791130 DOI: 10.1073/pnas.1610533113] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
24
Cascante-Estepa N, Gunka K, Stülke J. Localization of Components of the RNA-Degrading Machine in Bacillus subtilis. Front Microbiol 2016;7:1492. [PMID: 27708634 PMCID: PMC5030255 DOI: 10.3389/fmicb.2016.01492] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2016] [Accepted: 09/07/2016] [Indexed: 11/17/2022]  Open
25
Disselkoen C, Greco B, Cook K, Koch K, Lerebours R, Viss C, Cape J, Held E, Ashenafi Y, Fischer K, Acosta A, Cunningham M, Best AA, DeJongh M, Tintle N. A Bayesian Framework for the Classification of Microbial Gene Activity States. Front Microbiol 2016;7:1191. [PMID: 27555837 PMCID: PMC4977825 DOI: 10.3389/fmicb.2016.01191] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2015] [Accepted: 07/19/2016] [Indexed: 11/29/2022]  Open
26
Schultz D. Coordination of cell decisions and promotion of phenotypic diversity in B. subtilis via pulsed behavior of the phosphorelay. Bioessays 2016;38:440-5. [PMID: 26941227 DOI: 10.1002/bies.201500199] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
27
Rahmer R, Morabbi Heravi K, Altenbuchner J. Construction of a Super-Competent Bacillus subtilis 168 Using the P mtlA -comKS Inducible Cassette. Front Microbiol 2015;6:1431. [PMID: 26732353 PMCID: PMC4685060 DOI: 10.3389/fmicb.2015.01431] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2015] [Accepted: 12/01/2015] [Indexed: 11/16/2022]  Open
28
Waldron D. Bimodal regulation of genetic competence. Nat Rev Genet 2015. [DOI: 10.1038/nrg3987] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
29
Kampf J, Stülke J. Minor Cause—Major Effect: A Novel Mode of Control of Bistable Gene Expression. PLoS Genet 2015;11:e1005229. [PMID: 26110607 PMCID: PMC4482365 DOI: 10.1371/journal.pgen.1005229] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]  Open
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