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For: Borrel G, Lehours AC, Crouzet O, Jézéquel D, Rockne K, Kulczak A, Duffaud E, Joblin K, Fonty G. Stratification of Archaea in the deep sediments of a freshwater meromictic lake: vertical shift from methanogenic to uncultured archaeal lineages. PLoS One 2012;7:e43346. [PMID: 22927959 PMCID: PMC3424224 DOI: 10.1371/journal.pone.0043346] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2012] [Accepted: 07/19/2012] [Indexed: 11/19/2022]  Open
Number Cited by Other Article(s)
1
Von Eggers JM, Wisnoski NI, Calder JW, Capo E, Groff DV, Krist AC, Shuman B. Environmental filtering governs consistent vertical zonation in sedimentary microbial communities across disconnected mountain lakes. Environ Microbiol 2024;26:e16607. [PMID: 38477387 DOI: 10.1111/1462-2920.16607] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Accepted: 02/28/2024] [Indexed: 03/14/2024]
2
Lomakina AV, Bukin SV, Pogodaeva TV, Turchyn AV, Khlystov OM, Khabuev AV, Ivanov VG, Krylov AA, Zemskaya TI. Microbial diversity and authigenic siderite mediation in sediments surrounding the Kedr-1 mud volcano, Lake Baikal. GEOBIOLOGY 2023;21:770-790. [PMID: 37698260 DOI: 10.1111/gbi.12575] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2022] [Revised: 08/07/2023] [Accepted: 08/29/2023] [Indexed: 09/13/2023]
3
Jaffe AL, Bardot C, Le Jeune AH, Liu J, Colombet J, Perrière F, Billard H, Castelle CJ, Lehours AC, Banfield JF. Variable impact of geochemical gradients on the functional potential of bacteria, archaea, and phages from the permanently stratified Lac Pavin. MICROBIOME 2023;11:14. [PMID: 36694212 PMCID: PMC9875498 DOI: 10.1186/s40168-022-01416-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Accepted: 11/07/2022] [Indexed: 06/16/2023]
4
Liu YF, Yang L, Liu ZL, Chen J, Fang B, Zhou L, Liu JF, Yang SZ, Gu JD, Mu BZ. Discovery of the non-cosmopolitan lineages in Candidatus Thermoprofundales. Environ Microbiol 2022;24:3063-3080. [PMID: 35254697 DOI: 10.1111/1462-2920.15965] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2021] [Revised: 02/28/2022] [Accepted: 03/02/2022] [Indexed: 11/27/2022]
5
Rossi F, Carles L, Donnadieu F, Batisson I, Artigas J. Glyphosate-degrading behavior of five bacterial strains isolated from stream biofilms. JOURNAL OF HAZARDOUS MATERIALS 2021;420:126651. [PMID: 34329075 DOI: 10.1016/j.jhazmat.2021.126651] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2020] [Revised: 07/02/2021] [Accepted: 07/13/2021] [Indexed: 06/13/2023]
6
Lyautey E, Billard E, Tissot N, Jacquet S, Domaizon I. Seasonal Dynamics of Abundance, Structure, and Diversity of Methanogens and Methanotrophs in Lake Sediments. MICROBIAL ECOLOGY 2021;82:559-571. [PMID: 33538855 DOI: 10.1007/s00248-021-01689-9] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2020] [Accepted: 01/10/2021] [Indexed: 06/12/2023]
7
Eight metagenome-assembled genomes provide evidence for microbial adaptation in 20,000 to 1,000,000-year-old Siberian permafrost. Appl Environ Microbiol 2021;87:e0097221. [PMID: 34288700 DOI: 10.1128/aem.00972-21] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
8
Yuan B, Wu W, Guo M, Zhou X, Xie S. Spatial-temporal dynamics and influencing factors of archaeal communities in the sediments of Lancang River cascade reservoirs (LRCR), China. PLoS One 2021;16:e0253233. [PMID: 34129622 PMCID: PMC8205147 DOI: 10.1371/journal.pone.0253233] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Accepted: 05/31/2021] [Indexed: 11/19/2022]  Open
9
Zemskaya TI, Bukin SV, Lomakina AV, Pavlova ON. Microorganisms in the Sediments of Lake Baikal, the Deepest and Oldest Lake in the World. Microbiology (Reading) 2021. [DOI: 10.1134/s0026261721030140] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]  Open
10
Misson B, Garnier C, Poulain AJ. Limited influence of marine sediment lyophilization on prokaryotic community structure assessed via amplicon sequencing: an example from environmentally contrasted sediment layers in Toulon harbor (France). PeerJ 2021;9:e11075. [PMID: 33868808 PMCID: PMC8035903 DOI: 10.7717/peerj.11075] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2020] [Accepted: 02/17/2021] [Indexed: 11/20/2022]  Open
11
Coclet C, Garnier C, D’Onofrio S, Durrieu G, Pasero E, Le Poupon C, Omanović D, Mullot JU, Misson B, Briand JF. Trace Metal Contamination Impacts Predicted Functions More Than Structure of Marine Prokaryotic Biofilm Communities in an Anthropized Coastal Area. Front Microbiol 2021;12:589948. [PMID: 33679628 PMCID: PMC7933014 DOI: 10.3389/fmicb.2021.589948] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Accepted: 01/29/2021] [Indexed: 12/25/2022]  Open
12
Wallenius AJ, Dalcin Martins P, Slomp CP, Jetten MSM. Anthropogenic and Environmental Constraints on the Microbial Methane Cycle in Coastal Sediments. Front Microbiol 2021;12:631621. [PMID: 33679659 PMCID: PMC7935538 DOI: 10.3389/fmicb.2021.631621] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2020] [Accepted: 01/29/2021] [Indexed: 12/05/2022]  Open
13
Euler S, Jeffrey LC, Maher DT, Mackenzie D, Tait DR. Shifts in methanogenic archaea communities and methane dynamics along a subtropical estuarine land use gradient. PLoS One 2020;15:e0242339. [PMID: 33232349 PMCID: PMC7685437 DOI: 10.1371/journal.pone.0242339] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2020] [Accepted: 10/30/2020] [Indexed: 02/01/2023]  Open
14
Zamanpour MK, Kaliappan RS, Rockne KJ. Gas ebullition from petroleum hydrocarbons in aquatic sediments: A review. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2020;271:110997. [PMID: 32778285 DOI: 10.1016/j.jenvman.2020.110997] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2020] [Revised: 05/19/2020] [Accepted: 06/21/2020] [Indexed: 06/11/2023]
15
Han X, Schubert CJ, Fiskal A, Dubois N, Lever MA. Eutrophication as a driver of microbial community structure in lake sediments. Environ Microbiol 2020;22:3446-3462. [PMID: 32510812 DOI: 10.1111/1462-2920.15115] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2020] [Revised: 05/27/2020] [Accepted: 06/01/2020] [Indexed: 11/27/2022]
16
Yang Y, Chen J, Tong T, Xie S, Liu Y. Influences of eutrophication on methanogenesis pathways and methanogenic microbial community structures in freshwater lakes. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2020;260:114106. [PMID: 32041086 DOI: 10.1016/j.envpol.2020.114106] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2019] [Revised: 01/03/2020] [Accepted: 01/29/2020] [Indexed: 06/10/2023]
17
Compte-Port S, Fillol M, Gich F, Borrego CM. Metabolic versatility of freshwater sedimentary archaea feeding on different organic carbon sources. PLoS One 2020;15:e0231238. [PMID: 32267873 PMCID: PMC7141681 DOI: 10.1371/journal.pone.0231238] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2019] [Accepted: 03/19/2020] [Indexed: 12/25/2022]  Open
18
Gagliano MC, Sudmalis D, Pei R, Temmink H, Plugge CM. Microbial Community Drivers in Anaerobic Granulation at High Salinity. Front Microbiol 2020;11:235. [PMID: 32174895 PMCID: PMC7054345 DOI: 10.3389/fmicb.2020.00235] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Accepted: 01/31/2020] [Indexed: 01/24/2023]  Open
19
Rissanen AJ, Peura S, Mpamah PA, Taipale S, Tiirola M, Biasi C, Mäki A, Nykänen H. Vertical stratification of bacteria and archaea in sediments of a small boreal humic lake. FEMS Microbiol Lett 2019;366:5365400. [PMID: 30806656 PMCID: PMC6476745 DOI: 10.1093/femsle/fnz044] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2018] [Accepted: 02/23/2019] [Indexed: 01/22/2023]  Open
20
Vokou D, Genitsaris S, Karamanoli K, Vareli K, Zachari M, Voggoli D, Monokrousos N, Halley JM, Sainis I. Metagenomic Characterization Reveals Pronounced Seasonality in the Diversity and Structure of the Phyllosphere Bacterial Community in a Mediterranean Ecosystem. Microorganisms 2019;7:microorganisms7110518. [PMID: 31683878 PMCID: PMC6920919 DOI: 10.3390/microorganisms7110518] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2019] [Revised: 10/20/2019] [Accepted: 10/29/2019] [Indexed: 01/29/2023]  Open
21
Microbial communities involved in the methane cycle in the near-bottom water layer and sediments of the meromictic subarctic Lake Svetloe. Antonie van Leeuwenhoek 2019;112:1801-1814. [PMID: 31372944 DOI: 10.1007/s10482-019-01308-1] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2019] [Accepted: 07/24/2019] [Indexed: 02/07/2023]
22
Zhou Z, Liu Y, Lloyd KG, Pan J, Yang Y, Gu JD, Li M. Genomic and transcriptomic insights into the ecology and metabolism of benthic archaeal cosmopolitan, Thermoprofundales (MBG-D archaea). ISME JOURNAL 2018;13:885-901. [PMID: 30514872 PMCID: PMC6461988 DOI: 10.1038/s41396-018-0321-8] [Citation(s) in RCA: 53] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/26/2018] [Revised: 10/07/2018] [Accepted: 11/04/2018] [Indexed: 01/06/2023]
23
Bendia AG, Araujo GG, Pulschen AA, Contro B, Duarte RTD, Rodrigues F, Galante D, Pellizari VH. Surviving in hot and cold: psychrophiles and thermophiles from Deception Island volcano, Antarctica. Extremophiles 2018;22:917-929. [PMID: 30109444 DOI: 10.1007/s00792-018-1048-1] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2018] [Accepted: 08/08/2018] [Indexed: 12/22/2022]
24
Gagliano MC, Neu TR, Kuhlicke U, Sudmalis D, Temmink H, Plugge CM. EPS Glycoconjugate Profiles Shift as Adaptive Response in Anaerobic Microbial Granulation at High Salinity. Front Microbiol 2018;9:1423. [PMID: 30013532 PMCID: PMC6036115 DOI: 10.3389/fmicb.2018.01423] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2018] [Accepted: 06/11/2018] [Indexed: 11/22/2022]  Open
25
Compte-Port S, Borrego CM, Moussard H, Jeanbille M, Restrepo-Ortiz CX, de Diego A, Rodriguez-Iruretagoiena A, Gredilla A, Fdez-Ortiz de Vallejuelo S, Galand PE, Kalenitchenko D, Rols JL, Pokrovsky OS, Gonzalez AG, Camarero L, Muñiz S, Navarro-Navarro E, Auguet JC. Metal contaminations impact archaeal community composition, abundance and function in remote alpine lakes. Environ Microbiol 2018;20:2422-2437. [PMID: 29687572 DOI: 10.1111/1462-2920.14252] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2017] [Revised: 04/17/2018] [Accepted: 04/20/2018] [Indexed: 12/22/2022]
26
Rissanen AJ, Karvinen A, Nykänen H, Peura S, Tiirola M, Mäki A, Kankaala P. Effects of alternative electron acceptors on the activity and community structure of methane-producing and consuming microbes in the sediments of two shallow boreal lakes. FEMS Microbiol Ecol 2017. [PMID: 28637304 DOI: 10.1093/femsec/fix078] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]  Open
27
Compte-Port S, Subirats J, Fillol M, Sànchez-Melsió A, Marcé R, Rivas-Ruiz P, Rosell-Melé A, Borrego CM. Abundance and Co-Distribution of Widespread Marine Archaeal Lineages in Surface Sediments of Freshwater Water Bodies across the Iberian Peninsula. MICROBIAL ECOLOGY 2017;74:776-787. [PMID: 28508926 DOI: 10.1007/s00248-017-0989-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2017] [Accepted: 04/23/2017] [Indexed: 06/07/2023]
28
Laskar F, Das Purkayastha S, Sen A, Bhattacharya MK, Misra BB. Diversity of methanogenic archaea in freshwater sediments of lacustrine ecosystems. J Basic Microbiol 2017;58:101-119. [PMID: 29083035 DOI: 10.1002/jobm.201700341] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2017] [Revised: 09/25/2017] [Accepted: 09/27/2017] [Indexed: 12/15/2022]
29
Wurzbacher C, Fuchs A, Attermeyer K, Frindte K, Grossart HP, Hupfer M, Casper P, Monaghan MT. Shifts among Eukaryota, Bacteria, and Archaea define the vertical organization of a lake sediment. MICROBIOME 2017;5:41. [PMID: 28388930 PMCID: PMC5385010 DOI: 10.1186/s40168-017-0255-9] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2016] [Accepted: 03/15/2017] [Indexed: 05/10/2023]
30
Narrowe AB, Angle JC, Daly RA, Stefanik KC, Wrighton KC, Miller CS. High-resolution sequencing reveals unexplored archaeal diversity in freshwater wetland soils. Environ Microbiol 2017;19:2192-2209. [DOI: 10.1111/1462-2920.13703] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2016] [Revised: 02/09/2017] [Accepted: 02/14/2017] [Indexed: 11/29/2022]
31
Nkamga VD, Henrissat B, Drancourt M. Archaea: Essential inhabitants of the human digestive microbiota. ACTA ACUST UNITED AC 2017. [DOI: 10.1016/j.humic.2016.11.005] [Citation(s) in RCA: 74] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
32
The rapid degradation of bisphenol A induced by the response of indigenous bacterial communities in sediment. Appl Microbiol Biotechnol 2017;101:3919-3928. [DOI: 10.1007/s00253-017-8154-3] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2016] [Revised: 01/18/2017] [Accepted: 01/24/2017] [Indexed: 01/30/2023]
33
Diversity, abundance and activity of ammonia-oxidizing microorganisms in fine particulate matter. Sci Rep 2016;6:38785. [PMID: 27941955 PMCID: PMC5150234 DOI: 10.1038/srep38785] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2016] [Accepted: 11/14/2016] [Indexed: 02/07/2023]  Open
34
Spatiotemporal variation of bacterial and archaeal communities in sediments of a drinking reservoir, Beijing, China. Appl Microbiol Biotechnol 2016;101:3379-3391. [PMID: 27942905 DOI: 10.1007/s00253-016-8019-1] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2016] [Revised: 11/13/2016] [Accepted: 11/16/2016] [Indexed: 01/01/2023]
35
Vanwonterghem I, Evans PN, Parks DH, Jensen PD, Woodcroft BJ, Hugenholtz P, Tyson GW. Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota. Nat Microbiol 2016;1:16170. [PMID: 27694807 DOI: 10.1038/nmicrobiol.2016.170] [Citation(s) in RCA: 295] [Impact Index Per Article: 32.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2016] [Accepted: 08/12/2016] [Indexed: 11/09/2022]
36
Functional and structural characterization of two Bacillus megaterium nitroreductases biotransforming the herbicide mesotrione. Biochem J 2016;473:1443-53. [DOI: 10.1042/bj20151366] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2016] [Accepted: 03/22/2016] [Indexed: 01/23/2023]
37
Yang Y, Dai Y, Wu Z, Xie S, Liu Y. Temporal and Spatial Dynamics of Archaeal Communities in Two Freshwater Lakes at Different Trophic Status. Front Microbiol 2016;7:451. [PMID: 27065997 PMCID: PMC4814500 DOI: 10.3389/fmicb.2016.00451] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2016] [Accepted: 03/21/2016] [Indexed: 11/20/2022]  Open
38
Archaeal and bacterial communities across a chronosequence of drained lake basins in Arctic Alaska. Sci Rep 2015;5:18165. [PMID: 26681584 PMCID: PMC4683534 DOI: 10.1038/srep18165] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2015] [Accepted: 11/13/2015] [Indexed: 11/21/2022]  Open
39
Insights in the ecology and evolutionary history of the Miscellaneous Crenarchaeotic Group lineage. ISME JOURNAL 2015;10:665-77. [PMID: 26284443 DOI: 10.1038/ismej.2015.143] [Citation(s) in RCA: 66] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2015] [Revised: 06/26/2015] [Accepted: 07/01/2015] [Indexed: 11/08/2022]
40
Lever MA, Torti A, Eickenbusch P, Michaud AB, Šantl-Temkiv T, Jørgensen BB. A modular method for the extraction of DNA and RNA, and the separation of DNA pools from diverse environmental sample types. Front Microbiol 2015;6:476. [PMID: 26042110 PMCID: PMC4436928 DOI: 10.3389/fmicb.2015.00476] [Citation(s) in RCA: 175] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2015] [Accepted: 04/30/2015] [Indexed: 11/19/2022]  Open
41
Fillol M, Sànchez-Melsió A, Gich F, M. Borrego C. Diversity of Miscellaneous Crenarchaeotic Group archaea in freshwater karstic lakes and their segregation between planktonic and sediment habitats. FEMS Microbiol Ecol 2015;91:fiv020. [DOI: 10.1093/femsec/fiv020] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/17/2015] [Indexed: 02/06/2023]  Open
42
Meador TB, Bowles M, Lazar CS, Zhu C, Teske A, Hinrichs KU. The archaeal lipidome in estuarine sediment dominated by members of the Miscellaneous Crenarchaeotal Group. Environ Microbiol 2015;17:2441-58. [PMID: 25403417 DOI: 10.1111/1462-2920.12716] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2014] [Accepted: 11/08/2014] [Indexed: 11/27/2022]
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Zhang J, Yang Y, Zhao L, Li Y, Xie S, Liu Y. Distribution of sediment bacterial and archaeal communities in plateau freshwater lakes. Appl Microbiol Biotechnol 2014;99:3291-302. [PMID: 25432677 DOI: 10.1007/s00253-014-6262-x] [Citation(s) in RCA: 161] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2014] [Revised: 11/20/2014] [Accepted: 11/21/2014] [Indexed: 11/30/2022]
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Cheng TW, Lin LH, Lin YT, Song SR, Wang PL. Temperature-dependent variations in sulfate-reducing communities associated with a terrestrial hydrocarbon seep. Microbes Environ 2014;29:377-87. [PMID: 25273230 PMCID: PMC4262361 DOI: 10.1264/jsme2.me14086] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]  Open
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Cabassi J, Tassi F, Mapelli F, Borin S, Calabrese S, Rouwet D, Chiodini G, Marasco R, Chouaia B, Avino R, Vaselli O, Pecoraino G, Capecchiacci F, Bicocchi G, Caliro S, Ramirez C, Mora-Amador R. Geosphere-biosphere interactions in bio-activity volcanic lakes: evidences from Hule and Rìo Cuarto (Costa Rica). PLoS One 2014;9:e102456. [PMID: 25058537 PMCID: PMC4109938 DOI: 10.1371/journal.pone.0102456] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2014] [Accepted: 06/19/2014] [Indexed: 11/18/2022]  Open
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Das R, Kazy SK. Microbial diversity, community composition and metabolic potential in hydrocarbon contaminated oily sludge: prospects for in situ bioremediation. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2014;21:7369-89. [PMID: 24682711 DOI: 10.1007/s11356-014-2640-2] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2013] [Accepted: 02/10/2014] [Indexed: 05/20/2023]
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Microbial community stratification linked to utilization of carbohydrates and phosphorus limitation in a boreal peatland at Marcell Experimental Forest, Minnesota, USA. Appl Environ Microbiol 2014;80:3518-30. [PMID: 24682300 DOI: 10.1128/aem.00205-14] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
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Stoeva MK, Aris-Brosou S, Chételat J, Hintelmann H, Pelletier P, Poulain AJ. Microbial community structure in lake and wetland sediments from a high Arctic polar desert revealed by targeted transcriptomics. PLoS One 2014;9:e89531. [PMID: 24594936 PMCID: PMC3940601 DOI: 10.1371/journal.pone.0089531] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2013] [Accepted: 01/22/2014] [Indexed: 11/18/2022]  Open
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Chiaramonte JB, Roberto MDC, Pagioro TA. Large scale distribution of bacterial communities in the upper Paraná River floodplain. Braz J Microbiol 2014;45:1187-97. [PMID: 25763022 PMCID: PMC4323291 DOI: 10.1590/s1517-83822014000400009] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2013] [Accepted: 04/17/2014] [Indexed: 11/21/2022]  Open
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Restrepo-Ortiz CX, Casamayor EO. Environmental distribution of two widespread uncultured freshwater Euryarchaeota clades unveiled by specific primers and quantitative PCR. ENVIRONMENTAL MICROBIOLOGY REPORTS 2013;5:861-867. [PMID: 24249295 DOI: 10.1111/1758-2229.12088] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2013] [Accepted: 07/19/2013] [Indexed: 06/02/2023]
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