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For: Iyer KV, Maharana S, Gupta S, Libchaber A, Tlusty T, Shivashankar GV. Modeling and experimental methods to probe the link between global transcription and spatial organization of chromosomes. PLoS One 2012;7:e46628. [PMID: 23049710 PMCID: PMC3462193 DOI: 10.1371/journal.pone.0046628] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2011] [Accepted: 09/06/2012] [Indexed: 11/24/2022]  Open
Number Cited by Other Article(s)
1
Roy B, Pekec T, Yuan L, Shivashankar GV. Implanting mechanically reprogrammed fibroblasts for aged tissue regeneration and wound healing. Aging Cell 2024;23:e14032. [PMID: 38010905 PMCID: PMC10861198 DOI: 10.1111/acel.14032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2023] [Revised: 08/22/2023] [Accepted: 10/05/2023] [Indexed: 11/29/2023]  Open
2
Natesan R, Gowrishankar K, Kuttippurathu L, Kumar PBS, Rao M. Active Remodeling of Chromatin and Implications for In Vivo Folding. J Phys Chem B 2021;126:100-109. [DOI: 10.1021/acs.jpcb.1c08655] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
3
Lee JH, Kim DH, Lee HH, Kim HW. Role of nuclear mechanosensitivity in determining cellular responses to forces and biomaterials. Biomaterials 2019;197:60-71. [PMID: 30641265 DOI: 10.1016/j.biomaterials.2019.01.010] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2018] [Revised: 12/25/2018] [Accepted: 01/05/2019] [Indexed: 01/17/2023]
4
Bernheim-Groswasser A, Gov NS, Safran SA, Tzlil S. Living Matter: Mesoscopic Active Materials. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2018;30:e1707028. [PMID: 30256463 DOI: 10.1002/adma.201707028] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2017] [Revised: 03/27/2018] [Indexed: 06/08/2023]
5
Uhler C, Shivashankar GV. Nuclear Mechanopathology and Cancer Diagnosis. Trends Cancer 2018;4:320-331. [PMID: 29606315 DOI: 10.1016/j.trecan.2018.02.009] [Citation(s) in RCA: 84] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2018] [Revised: 02/26/2018] [Accepted: 02/27/2018] [Indexed: 11/29/2022]
6
Network analysis identifies chromosome intermingling regions as regulatory hotspots for transcription. Proc Natl Acad Sci U S A 2017;114:13714-13719. [PMID: 29229825 PMCID: PMC5748172 DOI: 10.1073/pnas.1708028115] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]  Open
7
Chromosome Intermingling: Mechanical Hotspots for Genome Regulation. Trends Cell Biol 2017;27:810-819. [DOI: 10.1016/j.tcb.2017.06.005] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2017] [Revised: 06/20/2017] [Accepted: 06/20/2017] [Indexed: 11/20/2022]
8
Uhler C, Shivashankar GV. Regulation of genome organization and gene expression by nuclear mechanotransduction. Nat Rev Mol Cell Biol 2017;18:717-727. [PMID: 29044247 DOI: 10.1038/nrm.2017.101] [Citation(s) in RCA: 258] [Impact Index Per Article: 32.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
9
Wang Y, Nagarajan M, Uhler C, Shivashankar GV. Orientation and repositioning of chromosomes correlate with cell geometry-dependent gene expression. Mol Biol Cell 2017;28:1997-2009. [PMID: 28615317 PMCID: PMC5541849 DOI: 10.1091/mbc.e16-12-0825] [Citation(s) in RCA: 73] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2016] [Revised: 06/01/2017] [Accepted: 06/05/2017] [Indexed: 12/13/2022]  Open
10
Wang Y, Jain N, Nagarajan M, Maharana S, Iyer KV, Talwar S, Shivashankar GV. Coupling between chromosome intermingling and gene regulation during cellular differentiation. Methods 2017;123:66-75. [PMID: 28554525 DOI: 10.1016/j.ymeth.2017.05.022] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2017] [Revised: 04/04/2017] [Accepted: 05/24/2017] [Indexed: 11/19/2022]  Open
11
Superresolution imaging of nanoscale chromosome contacts. Sci Rep 2017;7:42422. [PMID: 28186153 PMCID: PMC5301241 DOI: 10.1038/srep42422] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2016] [Accepted: 01/09/2017] [Indexed: 12/29/2022]  Open
12
Kim JJ, Bennett NK, Devita MS, Chahar S, Viswanath S, Lee EA, Jung G, Shao PP, Childers EP, Liu S, Kulesa A, Garcia BA, Becker ML, Hwang NS, Madabhushi A, Verzi MP, Moghe PV. Optical High Content Nanoscopy of Epigenetic Marks Decodes Phenotypic Divergence in Stem Cells. Sci Rep 2017;7:39406. [PMID: 28051095 PMCID: PMC5209743 DOI: 10.1038/srep39406] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2016] [Accepted: 11/23/2016] [Indexed: 12/22/2022]  Open
13
Uhler C, Shivashankar G. Geometric control and modeling of genome reprogramming. BIOARCHITECTURE 2016;6:76-84. [PMID: 27434579 PMCID: PMC6085119 DOI: 10.1080/19490992.2016.1201620] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2016] [Revised: 06/08/2016] [Accepted: 06/08/2016] [Indexed: 12/29/2022]
14
Maharana S, Iyer KV, Jain N, Nagarajan M, Wang Y, Shivashankar GV. Chromosome intermingling-the physical basis of chromosome organization in differentiated cells. Nucleic Acids Res 2016;44:5148-60. [PMID: 26939888 PMCID: PMC5603959 DOI: 10.1093/nar/gkw131] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2016] [Accepted: 02/19/2016] [Indexed: 12/16/2022]  Open
15
Diament A, Pinter RY, Tuller T. Three-dimensional eukaryotic genomic organization is strongly correlated with codon usage expression and function. Nat Commun 2014;5:5876. [PMID: 25510862 DOI: 10.1038/ncomms6876] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2014] [Accepted: 11/17/2014] [Indexed: 01/08/2023]  Open
16
Swift J, Discher DE. The nuclear lamina is mechano-responsive to ECM elasticity in mature tissue. J Cell Sci 2014;127:3005-15. [PMID: 24963133 DOI: 10.1242/jcs.149203] [Citation(s) in RCA: 154] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
17
Ganai N, Sengupta S, Menon GI. Chromosome positioning from activity-based segregation. Nucleic Acids Res 2014;42:4145-59. [PMID: 24459132 PMCID: PMC3985638 DOI: 10.1093/nar/gkt1417] [Citation(s) in RCA: 98] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]  Open
18
Turner LA, J. Dalby M. Nanotopography – potential relevance in the stem cell niche. Biomater Sci 2014;2:1574-1594. [DOI: 10.1039/c4bm00155a] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
19
Jahed Z, Shams H, Mehrbod M, Mofrad MRK. Mechanotransduction pathways linking the extracellular matrix to the nucleus. INTERNATIONAL REVIEW OF CELL AND MOLECULAR BIOLOGY 2014;310:171-220. [PMID: 24725427 DOI: 10.1016/b978-0-12-800180-6.00005-0] [Citation(s) in RCA: 80] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
20
Mehta IS, Kulashreshtha M, Chakraborty S, Kolthur-Seetharam U, Rao BJ. Chromosome territories reposition during DNA damage-repair response. Genome Biol 2013;14:R135. [PMID: 24330859 PMCID: PMC4062845 DOI: 10.1186/gb-2013-14-12-r135] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2013] [Accepted: 12/13/2013] [Indexed: 01/02/2023]  Open
21
Shin JW, Swift J, Ivanovska I, Spinler KR, Buxboim A, Discher DE. Mechanobiology of bone marrow stem cells: from myosin-II forces to compliance of matrix and nucleus in cell forms and fates. Differentiation 2013;86:77-86. [PMID: 23790394 PMCID: PMC3964600 DOI: 10.1016/j.diff.2013.05.001] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2013] [Revised: 05/01/2013] [Accepted: 05/02/2013] [Indexed: 12/22/2022]
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