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Custódio V, Gonin M, Stabl G, Bakhoum N, Oliveira MM, Gutjahr C, Castrillo G. Sculpting the soil microbiota. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 109:508-522. [PMID: 34743401 DOI: 10.1111/tpj.15568] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Revised: 10/20/2021] [Accepted: 11/01/2021] [Indexed: 06/13/2023]
Abstract
Soil is a living ecosystem, the health of which depends on fine interactions among its abiotic and biotic components. These form a delicate equilibrium maintained through a multilayer network that absorbs certain perturbations and guarantees soil functioning. Deciphering the principles governing the interactions within soils is of critical importance for their management and conservation. Here, we focus on soil microbiota and discuss the complexity of interactions that impact the composition and function of soil microbiota and their interaction with plants. We discuss how physical aspects of soils influence microbiota composition and how microbiota-plant interactions support plant growth and responses to nutrient deficiencies. We predict that understanding the principles determining the configuration and functioning of soil microbiota will contribute to the design of microbiota-based strategies to preserve natural resources and develop more environmentally friendly agricultural practices.
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Affiliation(s)
- Valéria Custódio
- Future Food Beacon of Excellence, School of Biosciences, University of Nottingham, Sutton Bonington, Nottingham, UK
| | - Mathieu Gonin
- Future Food Beacon of Excellence, School of Biosciences, University of Nottingham, Sutton Bonington, Nottingham, UK
| | - Georg Stabl
- Plant Genetics, TUM School of Life Sciences, Technical University of Munich (TUM), Emil Ramann Str. 4, Freising, 85354, Germany
| | - Niokhor Bakhoum
- Future Food Beacon of Excellence, School of Biosciences, University of Nottingham, Sutton Bonington, Nottingham, UK
| | - Maria Margarida Oliveira
- Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa, Av. da República, Oeiras, 2780-157, Portugal
| | - Caroline Gutjahr
- Plant Genetics, TUM School of Life Sciences, Technical University of Munich (TUM), Emil Ramann Str. 4, Freising, 85354, Germany
| | - Gabriel Castrillo
- Future Food Beacon of Excellence, School of Biosciences, University of Nottingham, Sutton Bonington, Nottingham, UK
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2
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Arbuscular Mycorrhizal Fungi Influence Crop Productivity, Plant Diversity, and Ecosystem Services. Fungal Biol 2022. [DOI: 10.1007/978-981-16-8877-5_16] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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3
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Adingo S, Yu JR, Xuelu L, Li X, Jing S, Xiaong Z. Variation of soil microbial carbon use efficiency (CUE) and its Influence mechanism in the context of global environmental change: a review. PeerJ 2021; 9:e12131. [PMID: 34721956 PMCID: PMC8522642 DOI: 10.7717/peerj.12131] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2021] [Accepted: 08/17/2021] [Indexed: 12/05/2022] Open
Abstract
Soil microbial carbon utilization efficiency (CUE) is the efficiency with which microorganisms convert absorbed carbon (C) into their own biomass C, also referred to as microorganism growth efficiency. Soil microbial CUE is a critical physiological and ecological parameter in the ecosystem’s C cycle, influencing the processes of C retention, turnover, soil mineralization, and greenhouse gas emission. Understanding the variation of soil microbial CUE and its influence mechanism in the context of global environmental change is critical for a better understanding of the ecosystem’s C cycle process and its response to global changes. In this review, the definition of CUE and its measurement methods are reviewed, and the research progress of soil microbial CUE variation and influencing factors is primarily reviewed and analyzed. Soil microbial CUE is usually expressed as the ratio of microbial growth and absorption, which is divided into methods based on the microbial growth rate, microbial biomass, substrate absorption rate, and substrate concentration change, and varies from 0.2 to 0.8. Thermodynamics, ecological environmental factors, substrate nutrient quality and availability, stoichiometric balance, and microbial community composition all influence this variation. In the future, soil microbial CUE research should focus on quantitative analysis of trace metabolic components, analysis of the regulation mechanism of biological-environmental interactions, and optimization of the carbon cycle model of microorganisms’ dynamic physiological response process.
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Affiliation(s)
- Samuel Adingo
- College of Forestry, Gansu Agricultural University, Lanzhou, Gansu, China
| | - Jie-Ru Yu
- College of Resources and Environment, Gansu Agricultural University, Lanzhou, Gansu, China
| | - Liu Xuelu
- College of Resources and Environment, Gansu Agricultural University, Lanzhou, Gansu, China
| | - Xiaodan Li
- School of Management, Gansu Agricultural University, Lanzhou, Gansu, China
| | - Sun Jing
- College of Resources and Environment, Gansu Agricultural University, Lanzhou, Gansu, China
| | - Zhang Xiaong
- College of Forestry, Gansu Agricultural University, Lanzhou, Gansu, China
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4
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Ofori S, Puškáčová A, Růžičková I, Wanner J. Treated wastewater reuse for irrigation: Pros and cons. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 760:144026. [PMID: 33341618 DOI: 10.1016/j.scitotenv.2020.144026] [Citation(s) in RCA: 59] [Impact Index Per Article: 19.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2020] [Revised: 11/02/2020] [Accepted: 11/20/2020] [Indexed: 06/12/2023]
Abstract
The appropriateness of using treated wastewater for crop or agricultural irrigation remains a bone of contention among experts and policymakers. Here, we outline and analyze not only the benefits but also the drawbacks of such a practice in order to suggest a way forward. To ensure that our review reflects the state-of-the-art in terms of technological advances and best practices, only literature published in the last decade is considered except for literature on the history of reuse. The review begins by highlighting growing water scarcity, the history of wastewater reuse in agriculture, and the limitations of existing studies. A short overview of the approach used in the write-up is outlined after the introduction. It then proceeds with an in-depth look at three broad areas: environmental impacts, public health impacts, and economic impacts. In terms of environmental impacts, effects on soil quality, water resources, plant growth, and soil microbial communities are analyzed. For each sub-area, the positive effects are described before the negative ones. The same approach is then applied to public health impacts, the focus of which is on human exposure to heavy metals and pathogens, and economic impacts, which are assessed with particular reference to investment cost, financial benefit to wastewater treatment plants (WWTPs), farm expenditure and income. Having weighed the advantages and disadvantages in each area, innovative measures are proposed for optimizing the benefits and mitigating the drawbacks of using treated wastewater for crop irrigation. Special consideration was given to contaminants of emerging concern and the known or perceived environmental and health risks associated with these contaminants.
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Affiliation(s)
- Solomon Ofori
- Department of Water Technology and Environmental Engineering, Faculty of Environmental Technology, University of Chemistry and Technology, Technická 5, 166 28 Praha 6 - Dejvice, Prague, Czech Republic.
| | - Adéla Puškáčová
- Department of Water Technology and Environmental Engineering, Faculty of Environmental Technology, University of Chemistry and Technology, Technická 5, 166 28 Praha 6 - Dejvice, Prague, Czech Republic
| | - Iveta Růžičková
- Department of Water Technology and Environmental Engineering, Faculty of Environmental Technology, University of Chemistry and Technology, Technická 5, 166 28 Praha 6 - Dejvice, Prague, Czech Republic
| | - Jiří Wanner
- Department of Water Technology and Environmental Engineering, Faculty of Environmental Technology, University of Chemistry and Technology, Technická 5, 166 28 Praha 6 - Dejvice, Prague, Czech Republic
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5
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Assessing the Industrial Effluent Effect on Irrigation Water Quality and Farm Soil near Kombolcha Town, Ethiopia. J CHEM-NY 2021. [DOI: 10.1155/2021/5586213] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
This study evaluated various industrial effluents’ effect on irrigation water quality and farm soil near Kombolcha town. Several industries such as brewery, steel iron, textile, and tannery have been installed near the Borkena River that crosses Kombolcha town. Representative samples of irrigation water and farm soil were collected from the upper and down part of Borkena river. The upper site was used as a control as it was not contaminated by industrial effluents. The analysis for selected parameters showed that the downstream irrigation water quality had mean concentrations of pH = 8.54, magnesium (Mg+2) = 5.27 mg/l, carbonate (CO3−2) = 1.25 mg/l, bicarbonate (HCO3−) = 9.10 mg/l, copper (Cu) = 0.21 mg/l, chromium (Cr) = 0.31 mg/l, and cadmium (Cd) = 0.03 mg/l which were above the permissible limit of the Food and Agriculture Organization’s (FAO’s) irrigation water quality standard. The mean concentrations of electric conductivity (EC) = 0.96 ds/m, sodium (Na+) = 3.35 mg/l, chloride (Cl−) = 7.67 mg/l, and total dissolved solids (TDS) = 612.98 mg/l were slightly and moderately restricted for irrigation. Moreover, the concentration of heavy metals, calcium (Ca+2) = 16.61 mg/l, iron (Fe) = 4.25 mg/l, manganese (Mn) = 0.18 mg/l, and lead (Pb) = 0.47 mg/l, was below the permissible limit of the FAO and nonrestricted. However, the mean concentration of EC, HCO3−, Cu, Cr, Cd, and TDS for downstream-irrigated farm soil samples was above the permissible limit of the FAO. The concentration of most selected parameters in downstream farm soil was also decreasing along with depth except pH, CO3−2, and HCO3-. Generally, there is a significant quality difference (at P ≤ 0.05) between the upstream and downstream irrigation water quality on the parameters of Mg+2, Cl−, Pb, and Cu.
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Sorinolu AJ, Tyagi N, Kumar A, Munir M. Antibiotic resistance development and human health risks during wastewater reuse and biosolids application in agriculture. CHEMOSPHERE 2021; 265:129032. [PMID: 33293048 DOI: 10.1016/j.chemosphere.2020.129032] [Citation(s) in RCA: 42] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Revised: 11/07/2020] [Accepted: 11/17/2020] [Indexed: 06/12/2023]
Abstract
The reuse of treated wastewater (TWW) and sewage sludge are considered as solutions to the limited water resource and sludge disposal issues, respectively. The associated environmental and human health risks need to be analyzed to assess whether they are safe solutions or not. This paper discusses issues that relate to the accumulation of antibiotics and antibiotic resistance (AR) determinants in agricultural lands and crops, following TWW irrigation and biosolid amendment. Exposure assessment and dose-response assessment are the two important aspects of risk assessment discussed in this paper. Finally, research gaps in current knowledge that are relevant to a comprehensive and quantitative AR risk assessment were identified which includes: 1.) Studies on soil conditions that increase the frequency of horizontal gene transfer (HGT) between native soil resistome and pathogenic microbes in biosolids and TWW 2.) Holistic studies that examine the accumulation or dissipation of antibiotics, antibiotic resistant bacteria (ARB) and antibiotic resistance genes (ARGs) from the irrigation/biosolids application stage to crop consumption stage 3.) The influences of soil environmental conditions (e.g. salinity, nutrients) on the fate of ARB and ARGs in soil and translocation in edible plants 4.) The development of dose-response models that explicitly incorporate the potential for ARGs transfer between microbes when quantifying the risks of infection due to ARB.
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Affiliation(s)
- Adeola Julian Sorinolu
- Department of Civil and Environmental Engineering, University of North Carolina at Charlotte, 9201 University City Blvd., Charlotte, NC, 28223, United States
| | - Neha Tyagi
- Department of Civil Engineering, Indian Institute of Technology (IIT) Delhi, Hauz Khas, New Delhi, 110 016, India
| | - Arun Kumar
- Department of Civil Engineering, Indian Institute of Technology (IIT) Delhi, Hauz Khas, New Delhi, 110 016, India
| | - Mariya Munir
- Department of Civil and Environmental Engineering, University of North Carolina at Charlotte, 9201 University City Blvd., Charlotte, NC, 28223, United States.
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7
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Ghazouani S, Béjaoui Z, Michael P, Spiers G, Beckett P, Gtari M, Nkongolo K. Rhizobioaugmentation of Casuarina glauca with N-fixing actinobacteria Frankia decreases enzymatic activities in wastewater irrigated soil: effects of Frankia on C. glauca growth. ECOTOXICOLOGY (LONDON, ENGLAND) 2020; 29:417-428. [PMID: 32166695 DOI: 10.1007/s10646-020-02187-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 02/25/2020] [Indexed: 06/10/2023]
Abstract
The use of wastewater for irrigation in agroforestry is cost-effective for water management. It is well established that rhizospheric microorganisms such as N2-fixing bacteria are able to modulate rhizobioaugmention and to boost phyoremediation process. To date, no study has been conducted to evaluate biological effects of rhizobioaugmentation in Casuarina glauca trees induced by their symbiont N-fixing actinobacteria of the genus Frankia. The objective of the present study was to evaluate the main effects of rhizobioaugmentation on the biological activity in the C. glauca's rhizosphere and on C. glauca growth in soils irrigated with industrial wastewater. Two Frankia strains (BMG5.22 and BMG5.23) were used in a single or dual inoculations of C. glauca seedlings irrigated with industrial wastewater. Soil enzymes activity related to carbon, phosphorus, sulfur and nitrogen cycling were measured. Results revealed that the BMG5.22 Frankia strain increases significantly the size (dry weight) of C. glauca shoots and roots while dual inoculation increased significantly the root length. Surprisingly, β-glucosidase (BG), cellobiohydrolase (CBH), β-N-acetylglucosaminidase (NAGase), aryl sulfatase (AS), acid phosphatase (AP), alkaline phosphatase (AlP), glycine aminopeptidase (GAP), leucine aminopeptidase (LAP), and peroxidase (PER) activity in the rhizosphere decreased significantly in soils treated with the two strains of symbionts. This suggests no positive correlations between enzymatic activity and C. glauca growth.
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Affiliation(s)
- Sabrine Ghazouani
- Faculty of Sciences of Tunis, University of Tunis El Manar, Tunis, Tunisia
- National Research Institute of Rural Engineering, Water and Forests (LR11INRGREF03), University of Carthage, Tunis, Tunisia
| | - Zoubeir Béjaoui
- National Research Institute of Rural Engineering, Water and Forests (LR11INRGREF03), University of Carthage, Tunis, Tunisia
| | - Paul Michael
- Biomolecular Sciences Program, Laurentian University, Sudbury, ON, Canada
| | - Graeme Spiers
- School of Environment, Laurentian University, Sudbury, ON, Canada
| | - Peter Beckett
- Department of Biology, Laurentian University, Sudbury, ON, Canada
| | - Maher Gtari
- National Institute of Applied Science and Technology, University of Carthage, Tunis, Tunisia
| | - Kabwe Nkongolo
- Biomolecular Sciences Program, Laurentian University, Sudbury, ON, Canada.
- Department of Biology, Laurentian University, Sudbury, ON, Canada.
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8
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Heavy Metal Tolerance Among Free-living Fungi Isolated from Soil Receiving Long Term Application of Wastewater. JOURNAL OF PURE AND APPLIED MICROBIOLOGY 2020. [DOI: 10.22207/jpam.14.1.17] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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9
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Nanoglomus plukenetiae, a new fungus from Peru, and a key to small-spored Glomeraceae species, including three new genera in the “Dominikia complex/clades”. Mycol Prog 2019. [DOI: 10.1007/s11557-019-01522-1] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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10
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Lüneberg K, Schneider D, Brinkmann N, Siebe C, Daniel R. Land Use Change and Water Quality Use for Irrigation Alters Drylands Soil Fungal Community in the Mezquital Valley, Mexico. Front Microbiol 2019; 10:1220. [PMID: 31258519 PMCID: PMC6587704 DOI: 10.3389/fmicb.2019.01220] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2019] [Accepted: 05/15/2019] [Indexed: 12/15/2022] Open
Abstract
Soil fungal communities provide important ecosystem services, however, some soil borne representatives damage agricultural productivity. Composition under land-use change scenarios, especially in drylands, is rarely studied. Here, the soil fungal community composition and diversity of natural shrubland was analyzed and compared with agricultural systems irrigated with different water quality, namely rain, fresh water, dam-stored, and untreated wastewater. Superficial soil samples were collected during the dry and rainy seasons. Amplicon-based sequencing of the ITS2 region was performed on total DNA extractions and used the amplicon sequence variants to predict specific fungal trophic modes with FUNGuild. Additionally, we screened for potential pathogens of crops and humans and assessed potential risks. Fungal diversity and richness were highest in shrubland and least in the wastewater-irrigated soil. Soil moisture together with soil pH and exchangeable sodium were the strongest drivers of the fungal community. The abundance of saprophytic fungi remained constant among the land use systems, while symbiotic and pathogenic fungi of plants and animals had the lowest abundance in soil irrigated with untreated wastewater. We found lineage-specific adaptations to each land use system: fungal families associated to shrubland, rainfed and part of the freshwater were adapted to drought, hence sensitive to exchangeable sodium content and most of them to N and P content. Taxa associated to freshwater, dam wastewater and untreated wastewater irrigated systems show the opposite trend. Additionally, we identified potentially harmful human pathogens that might be a health risk for the population.
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Affiliation(s)
- Kathia Lüneberg
- Departamento de Ciencias Ambientales y del Suelo, Instituto de Geología, Universidad Nacional Autónoma de México, Ciudad de México, Mexico
| | - Dominik Schneider
- Genomic and Applied Microbiology and Göttingen Genomics Laboratory, Institute of Microbiology and Genetics, Universität Göttingen, Göttingen, Germany
| | - Nicole Brinkmann
- Forest Botany and Tree Physiology, Büsgen-Institut, Universität Göttingen, Göttingen, Germany
| | - Christina Siebe
- Departamento de Ciencias Ambientales y del Suelo, Instituto de Geología, Universidad Nacional Autónoma de México, Ciudad de México, Mexico
| | - Rolf Daniel
- Genomic and Applied Microbiology and Göttingen Genomics Laboratory, Institute of Microbiology and Genetics, Universität Göttingen, Göttingen, Germany
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11
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Microbiological Constraints for Use of Reclaimed and Reconditioned Water in Food Production and Processing Operations. Food Microbiol 2019. [DOI: 10.1128/9781555819972.ch41] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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12
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Khalid S, Shahid M, Natasha, Bibi I, Sarwar T, Shah AH, Niazi NK. A Review of Environmental Contamination and Health Risk Assessment of Wastewater Use for Crop Irrigation with a Focus on Low and High-Income Countries. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2018; 15:E895. [PMID: 29724015 PMCID: PMC5981934 DOI: 10.3390/ijerph15050895] [Citation(s) in RCA: 113] [Impact Index Per Article: 18.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/27/2018] [Revised: 04/22/2018] [Accepted: 04/24/2018] [Indexed: 02/07/2023]
Abstract
Population densities and freshwater resources are not evenly distributed worldwide. This has forced farmers to use wastewater for the irrigation of food crops. This practice presents both positive and negative effects with respect to agricultural use, as well as in the context of environmental contamination and toxicology. Although wastewater is an important source of essential nutrients for plants, many environmental, sanitary, and health risks are also associated with the use of wastewater for crop irrigation due to the presence of toxic contaminants and microbes. This review highlights the harmful and beneficial impacts of wastewater irrigation on the physical, biological, and chemical properties of soil (pH, cations and anions, organic matter, microbial activity). We delineate the potentially toxic element (PTEs) build up in the soil and, as such, their transfer into plants and humans. The possible human health risks associated with the use of untreated wastewater for crop irrigation are also predicted and discussed. We compare the current condition of wastewater reuse in agriculture and the associated environmental and health issues between developing and developed countries. In addition, some integrated sustainable solutions and future perspectives are also proposed, keeping in view the regional and global context, as well as the grounded reality of wastewater use for crop production, sanitary and planning issues, remedial techniques, awareness among civil society, and the role of the government and the relevant stakeholders.
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Affiliation(s)
- Sana Khalid
- Department of Environmental Sciences, COMSATS Institute of Information Technology, 61100 Vehari, Pakistan; (S.K.); (N.); (T.S.); (A.H.S.)
| | - Muhammad Shahid
- Department of Environmental Sciences, COMSATS Institute of Information Technology, 61100 Vehari, Pakistan; (S.K.); (N.); (T.S.); (A.H.S.)
| | - Natasha
- Department of Environmental Sciences, COMSATS Institute of Information Technology, 61100 Vehari, Pakistan; (S.K.); (N.); (T.S.); (A.H.S.)
| | - Irshad Bibi
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad, Faisalabad 38040, Pakistan;
- MARUM and Department of Geosciences, University of Bremen, D-28359 Bremen, Germany
| | - Tania Sarwar
- Department of Environmental Sciences, COMSATS Institute of Information Technology, 61100 Vehari, Pakistan; (S.K.); (N.); (T.S.); (A.H.S.)
| | - Ali Haidar Shah
- Department of Environmental Sciences, COMSATS Institute of Information Technology, 61100 Vehari, Pakistan; (S.K.); (N.); (T.S.); (A.H.S.)
| | - Nabeel Khan Niazi
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad, Faisalabad 38040, Pakistan;
- MARUM and Department of Geosciences, University of Bremen, D-28359 Bremen, Germany
- Southern Cross GeoScience, Southern Cross University, Lismore, NSW 2480, Australia
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Quality of Irrigation Water Affects Soil Functionality and Bacterial Community Stability in Response to Heat Disturbance. Appl Environ Microbiol 2018; 84:AEM.02087-17. [PMID: 29180372 DOI: 10.1128/aem.02087-17] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2017] [Accepted: 11/20/2017] [Indexed: 11/20/2022] Open
Abstract
Anthropogenic activities alter the structure and function of a bacterial community. Furthermore, bacterial communities structured by the conditions the anthropogenic activities present may consequently reduce their stability in response to an unpredicted acute disturbance. The present mesocosm-scale study exposed soil bacterial communities to different irrigation water types, including freshwater, fertilized freshwater, treated wastewater, and artificial wastewater, and evaluated their response to a disturbance caused by heat. These effectors may be considered deterministic and stochastic forces common in agricultural operations of arid and semiarid regions. Bacterial communities under conditions of high mineral and organic carbon availability (artificial wastewater) differed from the native bacterial community and showed a proteobacterial dominance. These bacterial communities had a lower resistance to the heat treatment disturbance than soils under conditions of low resource availability (high-quality treated wastewater or freshwater). The latter soil bacterial communities showed a higher abundance of operational taxonomic units (OTUs) classified as Bacilli These results were elucidated by soil under conditions of high resource availability, which lost higher degrees of functional potential and had a greater bacterial community composition change. However, the functional resilience, after the disturbance ended, was higher under a condition of high resource availability despite the bacterial community composition shift and the decrease in species richness. The functional resilience was directly connected to the high growth rates of certain Bacteroidetes and proteobacterial groups. A high stability was found in samples that supported the coexistence of both resistant OTUs and fast-growing OTUs.IMPORTANCE This report presents the results of a study employing a hypothesis-based experimental approach to reveal the forces involved in determining the stability of a soil bacterial community to disturbance. The resultant postdisturbance bacterial community composition dynamics and functionality were analyzed. The paper demonstrates the relatedness of community structure and stability under cultivation conditions prevalent in an arid area under irrigation with water of different qualities. The use of common agricultural practices to demonstrate these features has not been described before. The combination of a fundamental theoretical issue in ecology with common and concerning disturbances caused by agricultural practice makes this study unique. Furthermore, the results of the present study have applicable importance regarding soil conservation, as it enables a better characterization and monitoring of stressed soil bacterial communities and possible intervention to reduce the stress. It will also be of valued interest in coming years, as fresh water scarcity and the use of alternative water sources are expected to rise globally.
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Soil Characteristics Driving Arbuscular Mycorrhizal Fungal Communities in Semiarid Mediterranean Soils. Appl Environ Microbiol 2016; 82:3348-3356. [PMID: 27016567 DOI: 10.1128/aem.03982-15] [Citation(s) in RCA: 51] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2015] [Accepted: 03/21/2016] [Indexed: 01/29/2023] Open
Abstract
UNLABELLED We investigated communities of arbuscular mycorrhizal fungi (AMF) in the roots and the rhizosphere soil of Brachypodium retusum in six different natural soils under field conditions. We explored phylogenetic patterns of AMF composition using indicator species analyses to find AMF associated with a given habitat (root versus rhizosphere) or soil type. We tested whether the AMF characteristics of different habitats or contrasting soils were more closely related than expected by chance. Then we used principal-component analysis and multivariate analysis of variance to test for the relative contribution of each factor in explaining the variation in fungal community composition. Finally, we used redundancy analysis to identify the soil properties that significantly explained the differences in AMF communities across soil types. The results pointed out a tendency of AMF communities in roots to be closely related and different from those in the rhizosphere soil. The indicator species analyses revealed AMF associated with rhizosphere soil and the root habitat. Soil type also determined the distribution of AMF communities in soils, and this effect could not be attributed to a single soil characteristic, as at least three soil properties related to microbial activity, i.e., pH and levels of two micronutrients (Mn and Zn), played significant roles in triggering AMF populations. IMPORTANCE Communities of arbuscular mycorrhizal fungi (AMF) are main components of soil biota that can determine the productivity of ecosystems. These fungal assemblages vary across host plants and ecosystems, but the main ecological processes that shape the structures of these communities are still largely unknown. A field study in six different soil types from semiarid areas revealed that AMF communities are significantly influenced by habitat (soil versus roots) and soil type. In addition, three soil properties related to microbiological activity (i.e., pH and manganese and zinc levels) were the main factors triggering the distribution of AMF. These results contribute to a better understanding of the ecological factors that can shape AMF communities, an important soil microbial group that affects multiple ecosystem functions.
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15
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Frenk S, Dag A, Yermiyahu U, Zipori I, Hadar Y, Minz D. Seasonal effect and anthropogenic impact on the composition of the active bacterial community in Mediterranean orchard soil. FEMS Microbiol Ecol 2015; 91:fiv096. [PMID: 26253508 DOI: 10.1093/femsec/fiv096] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/04/2015] [Indexed: 01/25/2023] Open
Abstract
Several anthropogenic interventions, common in agriculture, may influence active bacterial communities in soil without affecting their total composition. Therefore, the composition of an active bacterial community in soil may reflect its relation to biogeochemical processes. This issue was addressed during two consecutive years in olive-orchard soil, irrigated with treated wastewater (TWW) in a Mediterranean climate, by following the active (rRNA) and total (rRNA gene) bacterial community in the soil. Although TWW irrigation did not affect the composition of the total soil bacterial community, it had an effect on the active fraction of the community. These results, based on 16S rRNA data, indicate that the organic matter and minerals in TWW were not directly utilized for the rapid proliferation of specific taxonomic groups. Activity levels, manifested by variance in the relative abundance of the active and total communities of selected operational taxonomic units, revealed annual and seasonal fluctuations and fluctuations dependent on the type of irrigation. The potential activity (nitrification rates) and community composition of ammonia-oxidizing bacteria were affected by TWW irrigation, and this group of bacteria was therefore further explored. It was concluded that irrigation with TWW had little effect on "who is there", i.e. which bacteria were present, but influenced "who is active", with a distinct effect on bacteria associated with the biochemical cycling of nitrogen.
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Affiliation(s)
- Sammy Frenk
- Department of Soil, Water, and Environmental Sciences, Agricultural Research Organization, Volcani Center, Bet-Dagan, 5025001, Israel Department of Plant Pathology and Microbiology, Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, 7610001, Israel
| | - Arnon Dag
- Gilat Research Center, Agricultural Research Organization, MP Negev, 8528000, Israel
| | - Uri Yermiyahu
- Gilat Research Center, Agricultural Research Organization, MP Negev, 8528000, Israel
| | - Isaac Zipori
- Gilat Research Center, Agricultural Research Organization, MP Negev, 8528000, Israel
| | - Yitzhak Hadar
- Department of Plant Pathology and Microbiology, Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, 7610001, Israel
| | - Dror Minz
- Department of Soil, Water, and Environmental Sciences, Agricultural Research Organization, Volcani Center, Bet-Dagan, 5025001, Israel
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Becerra-Castro C, Lopes AR, Vaz-Moreira I, Silva EF, Manaia CM, Nunes OC. Wastewater reuse in irrigation: a microbiological perspective on implications in soil fertility and human and environmental health. ENVIRONMENT INTERNATIONAL 2015; 75:117-35. [PMID: 25461421 DOI: 10.1016/j.envint.2014.11.001] [Citation(s) in RCA: 170] [Impact Index Per Article: 18.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2014] [Revised: 11/04/2014] [Accepted: 11/04/2014] [Indexed: 05/25/2023]
Abstract
The reuse of treated wastewater, in particular for irrigation, is an increasingly common practice, encouraged by governments and official entities worldwide. Irrigation with wastewater may have implications at two different levels: alter the physicochemical and microbiological properties of the soil and/or introduce and contribute to the accumulation of chemical and biological contaminants in soil. The first may affect soil productivity and fertility; the second may pose serious risks to the human and environmental health. The sustainable wastewater reuse in agriculture should prevent both types of effects, requiring a holistic and integrated risk assessment. In this article we critically review possible effects of irrigation with treated wastewater, with special emphasis on soil microbiota. The maintenance of a rich and diversified autochthonous soil microbiota and the use of treated wastewater with minimal levels of potential soil contaminants are proposed as sine qua non conditions to achieve a sustainable wastewater reuse for irrigation.
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Affiliation(s)
- Cristina Becerra-Castro
- CBQF - Centro de Biotecnologia e Química Fina - Laboratório Associado, Escola Superior de Biotecnologia, Universidade Católica Portuguesa/Porto, Rua Arquiteto Lobão Vital, 4202-401 Porto, Portugal; LEPABE, Laboratório de Engenharia de Processos, Ambiente, Biotecnologia e Energia, Faculdade de Engenharia, Universidade do Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal
| | - Ana Rita Lopes
- CBQF - Centro de Biotecnologia e Química Fina - Laboratório Associado, Escola Superior de Biotecnologia, Universidade Católica Portuguesa/Porto, Rua Arquiteto Lobão Vital, 4202-401 Porto, Portugal; LEPABE, Laboratório de Engenharia de Processos, Ambiente, Biotecnologia e Energia, Faculdade de Engenharia, Universidade do Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal
| | - Ivone Vaz-Moreira
- CBQF - Centro de Biotecnologia e Química Fina - Laboratório Associado, Escola Superior de Biotecnologia, Universidade Católica Portuguesa/Porto, Rua Arquiteto Lobão Vital, 4202-401 Porto, Portugal; LEPABE, Laboratório de Engenharia de Processos, Ambiente, Biotecnologia e Energia, Faculdade de Engenharia, Universidade do Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal
| | - Elisabete F Silva
- Escola Superior de Tecnologia e Gestão, Instituto Politécnico de Viseu, Campus Politécnico de Repeses, 3504-510 Viseu, Portugal
| | - Célia M Manaia
- CBQF - Centro de Biotecnologia e Química Fina - Laboratório Associado, Escola Superior de Biotecnologia, Universidade Católica Portuguesa/Porto, Rua Arquiteto Lobão Vital, 4202-401 Porto, Portugal.
| | - Olga C Nunes
- LEPABE, Laboratório de Engenharia de Processos, Ambiente, Biotecnologia e Energia, Faculdade de Engenharia, Universidade do Porto, Rua Dr. Roberto Frias, 4200-465 Porto, Portugal.
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Carter KA, Smith JF, White MM, Serpe MD. Assessing the diversity of arbuscular mycorrhizal fungi in semiarid shrublands dominated by Artemisia tridentata ssp. wyomingensis. MYCORRHIZA 2014; 24:301-314. [PMID: 24249492 DOI: 10.1007/s00572-013-0537-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2013] [Accepted: 10/27/2013] [Indexed: 06/02/2023]
Abstract
Variation in the abiotic environment and host plant preferences can affect the composition of arbuscular mycorrhizal (AMF) assemblages. This study analyzed the AMF taxa present in soil and seedlings of Artemisia tridentata ssp. wyomingensis collected from sagebrush steppe communities in southwestern Idaho, USA. Our aims were to determine the AMF diversity within and among these communities and the extent to which preferential AMF-plant associations develop during seedling establishment. Mycorrhizae were identified using molecular methods following DNA extraction from field and pot culture samples. The extracted DNA was amplified using Glomeromycota specific primers, and identification of AMF was based on phylogenetic analysis of sequences from the large subunit-D2 rDNA region. The phylogenetic analyses revealed seven phylotypes, two within the Claroideoglomeraceae and five within the Glomeraceae. Four phylotypes clustered with known species including Claroideoglomus claroideum, Rhizophagus irregularis, Glomus microaggregatum, and Funneliformis mosseae. The other three phylotypes were similar to several published sequences not included in the phylogenetic analysis, but all of these were from uncultured and unnamed glomeromycetes. Pairwise distance analysis revealed some phylotypes with high genetic variation. The most diverse was the phylotype that included R. irregularis, which contained sequences showing pairwise differences up to 12 %. Most of the diversity in AMF sequences occurred within sites. The smaller genetic differentiation detected among sites was correlated with differences in soil texture. In addition, multiplication in pot cultures led to differentiation of AMF communities. Comparison of sequences obtained from the soil with those from A. tridentata roots revealed no significant differences between the AMF present in these samples. Overall, the sites sampled were dominated by cosmopolitan AMF taxa, and young seedlings of A. tridentata ssp. wyomingensis were colonized in relation to the abundance of these taxa in the soil.
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Affiliation(s)
- Keith A Carter
- Department of Biological Sciences, Boise State University, 1910 University Drive, Boise, ID, 83725-1515, USA
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Peng G, Bing W, Guangcan Z. Influence of sub-surface irrigation on soil conditions and water irrigation efficiency in a cherry orchard in a hilly semi-arid area of northern China. PLoS One 2013; 8:e73570. [PMID: 24039986 PMCID: PMC3767816 DOI: 10.1371/journal.pone.0073570] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2012] [Accepted: 07/23/2013] [Indexed: 11/30/2022] Open
Abstract
Sub-surface irrigation (SUI) is a new water-saving irrigation technology. To explore the influence of SUI on soil conditions in a cherry orchard and its water-saving efficiency, experiments were conducted from 2009 to 2010 using both SUI and flood irrigation (FLI) and different SUI quotas in hilly semi-arid area of northern China. The results demonstrated the following: 1) The bulk density of the soil under SUI was 6.8% lower than that of soil under FLI (P<0.01). The total soil porosity, capillary porosity and non-capillary porosity of soils using SUI were 11.7% (P<0.01), 8.7% (P<0.01) and 43.8% (P<0.01) higher than for soils using FLI. 2) The average soil temperatures at 0, 5, 10, 15 and 20 cm of soil depth using SUI were 1.7, 1.1, 0.7, 0.4 and 0.3°C higher than those for FLI, specifically, the differences between the surface soil layers were more significant. 3) Compared with FLI, the average water-saving efficiency of SUI was 55.6%, and SUI increased the irrigation productivity by 7.9-12.3 kg m(-3) ha(-1). 4) The soil moisture of different soil layers using SUI increased with increases in the irrigation quotas, and the soil moisture contents under SUI were significantly higher in the 0-20 cm layer and in the 21-50 cm layer than those under FLI (P<0.01). 5) The average yields of cherries under SUI with irrigation quotas of 80-320 m(3) ha(-1) were 8.7%-34.9% higher than those in soil with no irrigation (CK2). The average yields of cherries from soils using SUI were 4.5%-12.2% higher than using FLI. It is appropriate to irrigate 2-3 times with 230 m(3) ha(-1) per application using SUI in a year with normal rainfall. Our findings indicated that SUI could maintain the physical properties, greatly improve irrigation water use efficiency, and significantly increase fruit yields in hilly semi-arid areas of northern China.
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Affiliation(s)
- Gao Peng
- Shandong Agricultural University, College of Forestry/Taishan Mountain Forest Ecosystem Research Station/Shandong Provincial Key Laboratory of Soil Erosion and Ecological Restoration, Tai’an, Shandong, P. R. China
| | - Wang Bing
- Research Institute of Forest Ecology Environmental Protection, Chinese Academy of Forestry, Beijing, P. R. China
| | - Zhang Guangcan
- Shandong Agricultural University, College of Forestry/Taishan Mountain Forest Ecosystem Research Station/Shandong Provincial Key Laboratory of Soil Erosion and Ecological Restoration, Tai’an, Shandong, P. R. China
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Frenk S, Hadar Y, Minz D. Resilience of soil bacterial community to irrigation with water of different qualities under Mediterranean climate. Environ Microbiol 2013; 16:559-69. [DOI: 10.1111/1462-2920.12183] [Citation(s) in RCA: 60] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2013] [Revised: 05/30/2013] [Accepted: 06/03/2013] [Indexed: 11/30/2022]
Affiliation(s)
- Sammy Frenk
- Department of Soil, Water, and Environmental Sciences; Agricultural Research Organization - Volcani Center; Bet-Dagan 50250 Israel
- Department of Plant Pathology and Microbiology; Robert H. Smith Faculty of Agriculture, Food and Environment; The Hebrew University of Jerusalem; Rehovot 76100 Israel
| | - Yitzhak Hadar
- Department of Plant Pathology and Microbiology; Robert H. Smith Faculty of Agriculture, Food and Environment; The Hebrew University of Jerusalem; Rehovot 76100 Israel
| | - Dror Minz
- Department of Soil, Water, and Environmental Sciences; Agricultural Research Organization - Volcani Center; Bet-Dagan 50250 Israel
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