Soil stoichiometric imbalances constrain microbial-driven C and N dynamics in grassland

Grassland restoration leads to excessive soils with carbon (C) and nitrogen (N) contents that are inadequate to fulfill the requirements of microorganisms. The differences in the stoichiometric ratios of these elements could limit the activity of microorganisms, which ultimately affects the microbial C, N use efficiencies (CUE, NUE) and the dynamics of soil C and N. The present study was aimed at quantifying the soil microbial nutrient limitation and exploring the mechanisms underlying microbial-induced C and N dynamics in chrono-sequence of restored grasslands. It was revealed that grassland restoration increased microbial C, N content, microbial C, N uptake, and microbial CUE and NUE, while the threshold elemental ratio (the C:N ratio) decreased, which is mainly due to the synergistic effect of the microbial biomass and enzymatic stoichiometry imbalance after grassland restoration. Finally, we present a framework for the nutrient limitation strategies that stoichiometric imbalances constrain microbial-driven C and N dynamics. These results are the direct evidence of causal relations between stoichiometric ratios, microbial responses, and soil C, N cycling.

Converted paddy to upland in saline-sodic land could improve soil ecosystem multifunctionality by enhancing soil quality and alleviating microbial metabolism limitation

Soil salinization is one of the major soil degradation threats worldwide, and parameters related to soil quality and ecosystem multifunctionality (EMF) are crucial for evaluating the success of reclamation efforts in saline-sodic wasteland (WL). Microbial metabolic limitation is also one of the main factors that influences EMF in agricultural cropping systems. A ten-year localization experiment was conducted to reveal the key predictors of soil quality index (SQI) values, microbial metabolic characteristics, and EMF in different farmland cropping systems. A random forest model showed that the β-glucosidase (BG), cellobiosidase (CBH) and saturated hydraulic conductivity (SHC) of the SQI factors were the main driving forces of soil EMF. Compared to monoculture models, such as paddy field (PF) or upland field (UF), the converted paddy field to upland field (CF) cropping system was most effective at improving EMF in reclaimed saline-sodic WL, increasing this metric by 275.35 %. CF integrates practices from both PF and UF planting systems, improved soil quality and relieves microbial metabolic limitation. Specifically, both CF and PF significantly reduced soil pH (by 16-23 %) and sodium adsorption ration (SAR) (by 65-83 %) and significantly reduced the abundance of large macroaggregates. Moreover, CF significantly improved soil saturated hydraulic conductivity relative to PF and UF (p < 0.05), indicating an improvement in soil physical properties. Overall, although reclamation improved SQI compared to WL (0.25), the EMF of CF (0.56) was significantly higher than that of other treatments (p < 0.05). Thus, while increasing SQI can improve soil EMF, it was not as effective alone as it was when combined with more comprehensive efforts that focus on improving various soil properties and alleviating microbial metabolic limitations. Therefore, our results suggested that future saline-sodic wasteland reclamation efforts should avoid monoculture systems to enhance soil EMF.

Water stratification alters phytoplankton assemblages in scallop farming waters of the North Yellow Sea in China

As evaluation indicators of the primary productivity, the phytoplankton biomass and community structure are of great significance to the fishery industry, which can be driven by ocean currents, nutrients and water stratification. In the present study, the characteristics of phytoplankton assemblages in different water layers of a typical Yesso scallop farming area in Zhangzi Island, the North Yellow Sea were investigated from March 2021 to January 2022. According to the vertical distribution of temperature, water stratification was observed from June to August (stratification period), and disappeared in March, October and the following January with vertical homogeneity (mixing period). 18S rRNA gene sequencing results revealed that Pyrrophyta was the most dominant phylum during the sampling period, with high gene proportions in the stratification (63.36%) and mixing periods (77.35%). The gene proportion of Bacillariophyta in the stratification period was 5.44%, which was significantly lower than that in the mixing period of 8.93% (p < 0.05). Moreover, Pseudo-nitzschia, a toxin-producing taxon affiliated with Bacillariophyta, exhibited a significantly higher proportion in the stratification period than in the mixing period. During the stratification period, a number of toxin-producing taxa such as Pseudo-nitzschia and Karlodinium were enriched in the bottom layer, which was 1.29-fold and 1.37-fold of that in the surface layer, respectively. Redundancy analysis showed that phosphate and water temperature were major environmental factors driving the vertical distribution of phytoplankton assemblages. The phosphate (0.11 μM) and silicate (2.09 μM) concentrations in the surface layer approached the minimum threshold for phytoplankton growth, and the stoichiometric limitation of phosphate was detected in the surface and middle layers. Collectively, these results indicated that the decreased proportion ratio of Bacillariophyta to Pyrrophyta and unfavorable community composition of Bacillariophyta for scallops were observed during summer, which might result from the phosphate limitation driven by water stratification. The results will further our understanding of the dynamics of phytoplankton communities under the background of intensifying ocean stratification and provide ecological guidance for mollusc mariculture.

Ore improver additions alter livestock manure compost ecosystem C:N:P stoichiometry

Deciphering the pivotal components of nutrient metabolism in compost is of paramount importance. To this end, ecoenzymatic stoichiometry, enzyme vector modeling, and statistical analysis were employed to explore the impact of exogenous ore improver on nutrient changes throughout the livestock composting process. The total phosphorus increased from 12.86 to 18.72 g kg-1, accompanied by a marked neutralized pH with ore improver, resulting in the Carbon-, nitrogen-, and phosphorus-related enzyme activities decreases. However, the potential C:P and N:P acquisition activities represented by ln(βG + CB): ln(ALP) and ln(NAG): ln(ALP), were increased with ore improver addition. Based on the ecoenzymatic stoiometry theory, these changes reflect a decreasing trend in the relative P/N limitation, with pH and total phosphorus as the decisive factors. Our study showed that the practical employment of eco stoichiometry could benefit the manure composting process. Moreover, we should also consider the ecological effects from pH for the waste material utilization in sustainable agriculture.

Broadleaf trees switch from phosphorus to nitrogen limitation at lower latitudes than conifers

Nitrogen (N) and phosphorus (P) are common limiting elements for terrestrial ecosystem productivity. Understanding N-P nutrient limitations patterns is crucial for comprehending variations in productivity within terrestrial ecosystems. However, the global nutrient limitation patterns of woody plants, that dominate forests, especially across different functional types, remain unclear. Here, we compiled a global dataset of leaf N and P concentrations and resorption efficiency (NRE and PRE) to explore latitudinal nutrient limitation patterns in natural woody plants and their environmental drivers. Based on published fertilization experiments, we compiled another global woody plant nutrient database to validate such identified patterns. The results showed that with increasing latitude, the relative P vs N resorption efficiency (PRE minus NRE) and the N and P ratio decreased in woody plant leaves, suggesting that the nutrient status of woody plants shifts from P to N limitation as latitude increases, with a switching point of N-P balance occurring at mid-latitudes (42.9°-43.6°). Different functional types exhibited similar trends, but with different switching latitudes of N vs P limitation. Due to the lower N uptake capacity of broadleaves than conifers, broadleaves reached N-P balance at lower latitudes (39.6°-43.3°) than conifers (57.1°-59.1°) in both hemispheres. Data from fertilization experiments successfully identified 81 % of the N limitation cases and 91 % of the P limitation cases identified using the first database. N and P limitation cases for conifers and broadleaves were also well identified separately. The latitudinal nutrient limitations in global woody plants are primarily shaped by climate and soil. Our study demonstrates the switching latitudes of N vs P limitation which varies between broadleaves and conifers. These findings enhance our understanding of plant nutrient dynamics in global climate change and aid in refining forest management.

Aeolian dust and hydro-biological characteristics: Decoding dust storm impacts on phytoplankton in the northern Arabian Gulf

Aeolian dust is an essential source of growth-limiting nutrients for marine phytoplankton. Despite being at the core of the Global Dust Belt, the response of the Arabian Gulf ecosystem to such atmospheric forcing is rarely documented. Here, the hydro-biological effect of mineral dust was studied in the northern Arabian Gulf (NAG) off Kuwait through monthly water sampling (December 2020 to December 2021), dust-storm follow-up sampling, and mineral dust and nutrient addition in-situ experiments. The multivariate analysis of oceanographic data revealed pronounced hydro-biological seasonality. The mineral dust deposition during two severe dust storm events in March and June 2021 showed a spatially varying effect of dust on coastal waters. The dust storms elevated the surface dissolved iron levels by several magnitudes, increased the dissolved inorganic nitrogen and phosphorous levels, changed their stoichiometry, and offset the hydrobiological seasonality. In the microcosms, dust input temporarily reduced phytoplankton phosphorous limitation in a dose-dependent manner when mesozooplankton (copepods) grazing was minimal. The microphytoplankton response to mineral dust inputs was comparable to that with nitrogen and phosphorous treatment. While Both treatments increased diatom size structure and biomass, the abundance of single-celled diatoms was comparatively higher in dust treatment. Multivariate analysis indicated that dust deposition alters the hydrographical properties of the surface ocean during dust storm events. The effects, though transient, were traceable for 3-16 days post-storm in coastal waters. The response of the summer phytoplankton to these changes, if delayed or muted, should be interpreted with caution given the summer water column stratification, the high nitrogen: phosphorous ratio and the low phosphorous solubility of aerosol dust, and the complex pelagic microbial food web interactions in the NAG. This study thus underlines the importance of a multivariate approach in documenting the ecological implications of Aeolian dust storms on marine environments closer to the dust source regions.

Heterogeneity of leaf stoichiometry of different life forms along environmental transects in typical ecologically fragile areas of China

The coupling between carbon (C):nitrogen (N):phosphorus (P) stoichiometry in plant leaves is closely related to ecological functions such as photosynthesis, growth, and biogeochemical cycling. To explore the biogeographic patterns, nutrient limitations, and the relationships between leaf and soil stoichiometry, as well as the factors influencing leaf stoichiometry, we quantified community-level leaf C:N:P stoichiometry in trees, shrubs, and herbs along transects with a total length of about 4300 km. The leaf C:N:P ratios of trees, shrubs, and herbs were approximately 349:13:1, 267:14:1, and 226:12:1, respectively. Leaf C:N:P stoichiometry differed significantly (p < 0.05) among the life forms. Compared with global and Chinese scales, the C, N, and P concentrations were higher and C:N, C:P, and N:P ratios were lower. The leaf C:N:P stoichiometry patterns along a latitude gradient differed among life forms. There was no significant correlation between leaf N and soil total N, whereas leaf P of all three life forms increased significantly with increasing soil total P. Those results suggested a community-level N limitation for trees, shrubs, and herbs growth. Environmental factors explained 43.9, 26.5, and 6.1 % of leaf stoichiometric variations for trees, shrubs, and herbs, respectively. However, the key environmental driving factors gradually changed from climatic factors for trees and shrubs to soil factors for herbs. The results provide new insights into community-level biogeographical patterns and potential factors of leaf stoichiometry among plant life forms.

Response of soil micro-food web to nutrient limitation along a subtropical forest restoration

Forest ecosystem productivity and function is strongly influenced by the interaction between soil organisms and their resource use that can be impeded by an imbalance of ecological stoichiometry. Soil microorganisms are known to have an important role in biogeochemical cycling which is strongly influenced by ecological stoichiometry. However, there is limited understanding of how soil micro-food web respond to stoichiometric imbalances during forest restoration. Here, we investigated the effect of forest restoration on soil physio-chemical properties and the structure and function of soil micro-food web along a chronosequence of transformation stages: (i) early stage monoculture plantation of Chinese fir (Cunninghamia lanceolata) comprised of three age classes (5, 10 and 20 years); (ii) mid-stage conifer-broadleaved mixed forest; and (iii) late-stage mixed species broadleaved forest in south China. Results showed that forest restoration from C. lanceolata monocultures to mixed species broadleaved forest significantly increased soil organic carbon and total nitrogen. Soil bacteria, fungi, protists and nematodes abundance increased and the co-occurrence networks of soil biota became more complex and stable along the restoration chronosequence. In contrast, soil nitrogen and phosphorus limitations, particularly phosphorus limitation, increased along the chronosequence. In addition, soil exoenzyme activity suggested that the microbial investment in resource acquisition shifted from C- to nutrient-acquiring enzymes from the earlier to the later restoration stages. Availability of soil resources (e.g., dissolved organic carbon, ammonium, and available phosphate) appeared to have an important role in regulating soil food web composition, structure and stability during forest restoration. We conclude that nutrient limitation, particularly phosphorus limitation, likely has an important role in determining the stability of soil food webs during forest restoration. These findings contribute to our understanding of the relationships between soil nutrient limitation and soil micro-food web, and have implications for carbon sequestration through forest restoration and management in southern China.

A simple method for the preparation of single cells and regeneration of colonies of Botryococcus braunii NIES836

Botryococcus braunii, a colonial alga, is known for notably slow growth; however, the growth rate and hydrocarbon productivity are expected to be improved using genetic modification techniques. Nevertheless, B. braunii has a hydrocarbon-rich extracellular matrix (ECM), and the ECM is a major barrier to DNA transformation. To analyse and utilize genetically modified B. braunii, it is essential to regenerate genetically homogeneous colonies derived from single cells. In this study, we developed a novel, simple method for harvesting viable single cells of B. braunii by centrifugation of the culture and subsequent filtration alone. The harvest of single cells was made possible by culturing B. braunii colonies in AF6 medium until the depletion of nitrogen and phosphorus sources and then releasing the single cells in colonies into the medium. Twenty-day culture of single cells in a 96-well plate resulted in 96% regeneration of colonies, and the regeneration of colonies was also confirmed on agar medium. This is the first report of colony regeneration from single cells of B. braunii. We believe that our method developed in this study will contribute greatly to the advancement of genetic modification techniques for B. braunii.

Interactions between nitrogen and phosphorus in modulating soil respiration: A meta-analysis

BACKGROUND

Economic and social development worldwide increases the input of nutrients, especially nitrogen (N) and phosphorus (P), to soils. These nutrients affect soil respiration (Rs) in terrestrial ecosystems. They may act independently or have interactive effects on Rs. The effect of N and P on Rs and its components (autotrophic respiration [Ra] and heterotrophic respiration [Rh]), however, either individually or together, is poorly understood. We performed a meta-analysis of 130 studies to examine the effects of different fertilization treatments on Rs and its components across terrestrial ecosystems.

RESULTS

Our results showed that (1) The impact of fertilizer addition on Rs varies among different fertilizer types. N addition reduced Rs and Rh significantly but did not affect Ra; P addition had no significant effect on Rs, Rh, and Ra; NP addition increased Rs significantly but did not affect Rh and Ra. (2) Ecosystem type, duration of fertilization, fertilization rate, and fertilizer form influenced the response of Rs and its components to fertilizer application. (3) Based on our study, the annual average temperature may be a driving factor of Rs response to fertilizer addition, while soil total nitrogen may be an important predictor of Rs response to fertilizer addition.

CONCLUSION

Overall, our study highlights the complex and multifaceted nature of the response of soil Rs and its components to fertilizer application, underscoring the importance of considering multiple factors when predicting and modeling future Rs and its feedback to global change.

Shifting of nutrient limitation dominates the recovery of aboveground net primary productivity of mixed forests in northeastern China after selective logging

The primary productivity of temperate forests is commonly limited by nitrogen (N) supply, which may be aggravated by the removal of trees. After selective logging, whether and the mechanism by which the N limitation can be alleviated by the rapidly increasing nutrient turnover during the recovery processes, which is important for improving carbon sequestration in temperate forests, remain unclear. We investigated the effect of nutrient limitation (leaf N:Pcom: the leaf N:P ratio at the community level) on plant community productivity by selecting 28 forest plots including seven forest recovery periods (at the sites logged 6, 14, 25, 36, 45, 55, and 100 years ago) following low-intensity selective logging (13-14 m3/ha) and one unlogged treatment by measuring the soil N concentration, soil phosphorus (P) concentration, leaf N concentration, leaf P concentration, and the aboveground net primary productivity (ANPP) of 234 plant species. The plant growth in temperate forests was limited by N, but the P limitation was observed at the sites logged 36 years ago, which showed a transition pattern of plant growth from N limitation to P limitation during the forest recovery process. Meanwhile, a robust linear trend in the community ANPP was observed with the increase in the community leaf N:P ratio, which suggests the enhancement in community ANPP with the release of N limitation after selective logging. Nutrient limitation (leaf N:Pcom) had a significant direct effect (56.0 %) on the community ANPP and showed a higher independent contribution (25.6 %) to the variation in the community ANPP than the soil nutrient supply and even the changes in species richness. Our results suggested that selective logging alleviated the N limitation, but a shift toward P limitation should also be highly regarded in learning the changes in carbon sequestration during the recovery processes.

Environmental modulation of exopolysaccharide production in the cyanobacterium Synechocystis 6803

Microorganisms produce extracellular polymeric substances (EPS, also known as exopolysaccharides) of diverse composition and structure. The biochemical and biophysical properties of these biopolymers enable a wide range of industrial applications. EPS from cyanobacteria are particularly versatile as they incorporate a larger number and variety of building blocks and adopt more complex structures than EPS from other organisms. However, the genetic makeup and regulation of EPS biosynthetic pathways in cyanobacteria are poorly understood. Here, we measured the effect of changing culture media on titre and composition of EPS released by Synechocystis sp. PCC 6803, and we integrated this information with transcriptomic data. Across all conditions, daily EPS productivity of individual cells was highest in the early growth phase, but the total amount of EPS obtained from the cultures was highest in the later growth phases due to accumulation. Lowering the magnesium concentration in the media enhanced per-cell productivity but the produced EPS had a lower total sugar content. Levels of individual monosaccharides correlated with specific culture media components, e.g. xylose with sulfur, glucose and N-acetyl-galactosamine with NaCl. Comparison with RNA sequencing data suggests a Wzy-dependent biosynthetic pathway and a protective role for xylose-rich EPS. This multi-level analysis offers a handle to link individual genes to the dynamic modulation of a complex biopolymer. KEY POINTS: • Synechocystis exopolysaccharide amount and composition depends on culture condition • Production rate and sugar content can be modulated by Mg and S respectively • Wzy-dependent biosynthetic pathway and protective role proposed for xylose-rich EPS.

Examination of the negative correlation between leaf δ15N and the N:P ratio across a northeast-southwest transect in China

Nitrogen (N) and phosphorus (P) are two crucial limiting mineral elements for terrestrial plants. Although the leaf N:P ratio is extensively used to indicate plant nutrient limitations, the critical N:P ratios cannot be universally applied. Some investigations have suggested that leaf nitrogen isotopes (δ15N) can provide another proxy for nutrient limitations along with the N:P ratio, but the negative relationships between N:P and δ15N were mainly limited to fertilization experiments. It will obviously benefit the study of the nature of nutrient limitations if the relationship could be explained more generally. We analyzed leaf δ15N, N, and P contents across a northeast-southwest transect in China. Leaf δ15N was weakly negatively correlated with leaf N:P ratios for all plants, while there was no correlation between them for various plant groups, including different growth forms, genera, and species across the entire N:P range. This suggests that the use of leaf δ15N in indicating the shift of nutrient limitations across the whole N:P range still requires more validated field investigations. Notably, negative relationships between δ15N and N:P hold for plants with N:P ratios between 10 and 20 but not for plants with N:P ratios lower than 10 or higher than 20. That is, changes in leaf δ15N along with the N:P ratio of plants that are co-limited by N and P can exhibit variations in plant nutrient limitations, whereas plants that are strictly limited by N and P cannot. Moreover, these relationships are not altered by vegetation type, soil type, MAP, or MAT, indicating that the use of leaf δ15N in reflecting shifts in nutrient limitations, depending on the plant nutrient limitation range, is general. We examined the relationships between leaf δ15N and the N:P ratio across an extensive transect, providing references for the widespread use of leaf δ15N in reflecting shifts in nutrient limitation.

Leaf nutrient resorption of two life-form tree species in urban gardens and their response to soil nutrient availability

Background

Leaf nutrient resorption is a key strategy in plant conservation that minimizes nutrient loss and enhances productivity. However, the differences of the nutrient resorption among garden tree species in urban ecosystems were not clearly understood, especially the differences of nitrogen resorption efficiency (NRE) and phosphorous resorption efficiency (PRE) between evergreen and deciduous trees.

Methods

We selected 40 most generally used garden tree specie belonged two life forms (evergreen and deciduous) and investigated the nitrogen (N) and phosphorus (P) concentrations in green and senesced leaves and soil nutrient concentrations of nine samples trees for each species. Then, the nutrient concentrations and resorption efficiency were compared, and the soil nutrients utilization strategies were further analyzed.

Results

The results showed that the N concentration was significantly higher in the green and senesced leaves of deciduous trees than in the leaves of evergreen trees. The two life-form trees were both N limited and evergreen trees were more sensitive to N limitation. The NRE and PRE in the deciduous trees were significantly higher than those in the evergreen trees. The NRE was significantly positively correlated with the PRE in the deciduous trees. As the soil N and P concentrations increased, the nutrient resorption efficiency (NuRE) of the evergreen trees increased, but that of the deciduous trees decreased. Compared with the deciduous trees, the evergreen trees were more sensitive to the feedback of soil N and P concentrations. These findings reveal the N and P nutrient resorption mechanism of evergreen and deciduous trees and fill a gap in the understanding of nutrient resorption in urban ecosystems.

Rewetting the hyper-arid Atacama Desert soil reactivates a carbon-starved microbial decomposer community and also triggers archaeal metabolism

Extreme environmental conditions make soils of the hyper-arid Atacama Desert one of the most hostile habitats for life on the planet. During the short intervals of moisture availability that occur, it remains unresolved how soil microorganisms physiologically respond to such dramatic environmental changes. Therefore, we simulated a precipitation event - without (H₂O) and with (H₂O + C) labile carbon (C) supplementation - and investigated the responses in microbial communities (using phospholipid fatty acids (PLFAs) and archaeal glycerol dialkyl glycerol tetraether (GDGTs)) and physiology (by means of respiration, bacterial and fungal growth and C-use efficiency (CUE)) during a five-day incubation. We demonstrated that bacterial and fungal growth does occur in these extreme soils following rewetting, albeit at 100-10,000-fold lower rates compared to previously studied soil systems. C supplementation increased levels of bacterial growth and respiration responses by 5- and 50-fold, respectively, demonstrating a C-limited microbial decomposer community. While the microbial CUE following rewetting was c. 14 %, the addition of labile C during rewetting resulted in a substantial reduction (c. 1.6 %). Consistent with these interpretations, the PLFA composition clearly shifted from saturated towards more unsaturated and branched PLFAs, which could arise from (i) a physiological adaptation of the cell membrane to changing osmotic conditions or (ii) a community composition shift. Significant increases in total PLFA concentrations were solely found with H₂O + C addition. Contrary to other recent studies, we found evidence for a metabolically active archaeal community in these hyper-arid soils upon rewetting. We conclude that (i) microorganisms in this extreme soil habitat can be activated and grow within days following rewetting, (ii) available C is the limiting factor for microbial growth and biomass gains, and (iii) that an optimization of tolerating the extreme conditions while maintaining a high CUE comes at the expense of very poor resource-use efficiency during high resource availability.

Domoic acid production by Pseudo-nitzschia australis: Re-evaluating the role of macronutrient limitation on toxigenicity

The toxigenic diatom Pseudo-nitzschia australis (Frenguelli), isolated from the California Current System (CCS), was examined in unialgal laboratory cultures to evaluate domoic acid (DA) production and cellular growth as a response to macronutrient limitation. Toxic blooms of P. australis are common in the coastal waters of eastern boundary upwelling systems (EBUS), including those of the CCS off the west coast of the United States where limitation by macronutrients, specifically silicon as silicic acid [Si(OH)₄], or phosphorus as phosphate [PO₄^3-], has been suggested to increase the production of DA by these diatoms. This study used batch cultures grown under conditions of macronutrient sufficiency and limitation, expected during and after a natural upwelling event, to determine whether PO₄^3- or Si(OH)₄ deficiency enhances the production of DA and the expected risk of DA toxicity in natural coastal ecosystems. These controlled lab studies demonstrate that despite increases in cell-specific DA concentrations found during the nutrient-limited stationary phase, DA production rates did not increase due to either PO₄^3- or Si(OH)₄ limitation, and total DA production rates were statistically greater during the nutrient-replete, exponential growth phase compared to the nutrient-limited, stationary phase. In addition, the relative contribution of particulate DA (pDA) and dissolved DA (dDA) varied markedly with growth phase, where the contribution of pDA to total DA (pDA + dDA) declined from an average of 70% under P- and Si-replete conditions to 49% under P-limited conditions and 39% under Si-limited conditions. These laboratory results demonstrate that macronutrient sufficiency does not regulate the biosynthetic production of DA by this strain of P. australis. This finding, together with a comparative analysis of the various equations employed to estimate DA production, suggests that the current paradigm of increased toxigenicity due to macronutrient limitation be carefully re-examined, particularly when attempting to forecast the toxic threat of DA to coastal ecosystems as a function of macronutrient availability.

Neopolyploidy causes increased nutrient requirements and a shift in plant growth strategy in Heuchera cylindrica

Functional traits fall along a continuum from resource-conservative to acquisitive and are powerful predictors of the ecological settings necessary for a species to persist and establish. As a consequence, a major problem that functional trait analysis could address is understanding the ecological contexts necessary for the persistence of polyploid plants, because early generation polyploids, or "neopolyploids", are at a high extinction risk. Since neopolyploidy could increase nutrient limitation, growth strategies should shift to accommodate the increased need for resources, but this prediction is untested. To address this gap, we compared the functional trait responses of diploids, synthetic neotetraploids, and naturally occurring tetraploids of Heuchera cylindrica, an herbaceous perennial plant, to nutrient manipulations in a greenhouse experiment. We found strong support for the hypothesis that neotetraploidy increases nutrient requirements, as evidenced by reduced productivity and increased tissue concentrations of nitrogen and phosphorus in neotetraploids. We also found that repeated formation of independent origins of neotetraploidy led to differing responses to nutrient supply, but neotetraploidy generally shifted functional traits to be more resource-acquisitive and inefficient. Taken together, our results suggest that shifts in functional trait responses may constrain the ability of neopolyploids to establish in nutrient-poor habitats. This article is protected by copyright. All rights reserved.

The role of the ecological scaffold in the origin and maintenance of whole-group trait altruism in microbial populations

BACKGROUND

Kin and multilevel selection provide explanations for the existence of altruism based on traits or processes that enhance the inclusive fitness of an altruist individual. Kin selection is often based on individual-level traits, such as the ability to recognize other altruists, whereas multilevel selection requires a metapopulation structure and dispersal process. These theories are unified by the general principle that altruism can be fixed by positive selection provided the benefit of altruism is preferentially conferred to other altruists. Here we take a different explanatory approach based on the recently proposed concept of an "ecological scaffold". We demonstrate that ecological conditions consisting of a patchy nutrient supply that generates a metapopulation structure, episodic mixing of groups, and severe nutrient limitation, can support or "scaffold" the evolution of altruism in a population of microbes by amplifying drift. This contrasts with recent papers in which the ecological scaffold was shown to support selective processes and demonstrates the power of scaffolding even in the absence of selection.

RESULTS

Using computer simulations motivated by a simple theoretical model, we show that, although an altruistic mutant can be fixed within a single population of non-altruists by drift when nutrients are severely limited, the resulting altruistic population remains vulnerable to non-altruistic mutants. We then show how the imposition of the "ecological scaffold" onto a population of non-altruists alters the balance between selection and drift in a way that supports the fixation and subsequent persistence of altruism despite the possibility of invasion by non-altruists.

CONCLUSIONS

The fixation of an altruistic mutant by drift is possible when supported by ecological conditions that impose a metapopulation structure, episodic mixing of groups, and severe nutrient limitation. This is significant because it offers an alternative explanation for the evolution of altruism based on drift rather than selection. Given the ubiquity of low-nutrient "oligotrophic" environments in which microbes exist (e.g., the open ocean, deep subsurface soils, or under the polar ice caps) our results suggest that altruistic and cooperative behaviors may be highly prevalent among microbial populations.

Phosphorus scarcity contributes to nitrogen limitation in lowland tropical rainforests

There is increasing evidence to suggest that soil nutrient availability can limit the carbon sink capacity of forests, a particularly relevant issue considering today's changing climate. This question is especially important in the tropics, where most part of the Earth's plant biomass is stored. To assess whether tropical forest growth is limited by soil nutrients and to explore N and P limitations, we analyzed stem growth and foliar elemental composition of the 5 stem widest trees per plot at two sites in French Guiana after three years of nitrogen (N), phosphorus (P), and N+P addition. We also compared the results between potential N-fixer and non-N-fixer species. We found a positive effect of N fertilization on stem growth and foliar N, as well as a positive effect of P fertilization on stem growth, foliar N, and foliar P. Potential N-fixing species had greater stem growth, greater foliar N and greater foliar P concentrations than non-N-fixers. In terms of growth, there was a negative interaction between N-fixer status, N+P, and P fertilization, but no interaction with N fertilization. Since N-fixing plants does not show to be completely N saturated, we do not anticipate N providing from N-fixing plants would supply non-N-fixers. Although the soil age hypothesis only anticipates P limitation in highly weathered systems, our results for stem growth and foliar elemental composition indicate the existence of considerable N and P co-limitation, which is alleviated in N-fixing plants. The evidence suggests that certain mechanisms invest in N to obtain the scarce P through soil phosphatases, which potentially contributes to the N limitation detected by this study.

Ecophysiological response of marine copepods to dietary elemental imbalances

We assessed the effects of nutrient imbalanced diets on the feeding, reproduction and gross-growth efficiency of egg production of the copepod Paracartia grani. The cryptophyte Rhodomonas salina, cultivated under balanced (f/2) and imbalanced growth conditions (N and P limitation), served as prey. Copepod C:N and C:P ratios increased in the imbalanced treatments, particularly under P limitation. Feeding and egg production rates did not differ between the balanced and N-limited treatments but decreased under P limitation. We found no evidence of compensatory feeding in P. grani. C gross-growth efficiency averaged 0.34 in the balanced treatment and declined to values of 0.23 and 0.14 for the N- and P-limited treatments, respectively. Under N limitation, N gross-growth efficiency increased significantly to a mean value of 0.69, likely as a result of increasing the nutrient absorption efficiency. P gross-growth efficiency reached values > 1 under P limitation, involving the depletion of body P. Hatching success was >80%, with no differences among diets. Hatched nauplii, however, had lower size and slower development when the progenitor was fed a P-limited diet. This study highlights the effects of P limitation in copepods, which are more constraining than N, and the presence of maternal effects driven by prey nutritional composition that ultimately may affect population fitness.

Patterns of carbon, nitrogen, and phosphorus stoichiometry of three life-form desert plants and responses to soil and microbial biomass factors in a hyper-arid desert ecosystem

Plant, soil, and microbial biomass ratios of carbon (C), nitrogen (N), and phosphorus (P) are crucial in maintaining stability of desert ecosystems. Nevertheless, variation in relations of elemental ratios between different life forms of plants and soil and microbial biomass in desert ecosystems remains unclear. In a hyper-arid desert ecosystem, C, N, and P concentrations and ratios were analyzed in the plant-soil-microbial biomass system of three perennial desert species (Alhagi sparsifolia Shap. [Herb, Fabaceae], Karelinia caspica Pall. [Herb, non-Fabaceae], and Tamarix ramosissima Ledeb. [Shrub]). Concentrations of N and P in Alhagi sparsifolia leaf, stem, and root were significantly greater than those in Karelinia caspica and Tamarix ramosissima, whereas plant C and soil organic C (SOC) were highest with Tamarix ramosissima. Alhagi sparsifolia and Tamarix ramosissima were P-limited, whereas Karelinia caspica was N-limited. According to correlation analysis, SOC rather than soil total P (STP) regulated plant N:P ratios, and microbial biomass C, N, and P rather than SOC, soil total N, and STP regulated plant C:N:P ratios. Soil water content also affected plant nutrient balance. Thus, in a hyper-arid desert ecosystem, the plant-soil-microbial biomass system and the balance of C, N, and P are closely related, and the role of soil microbial biomass in affecting plant nutrient balance should receive increased attention.

Hydrothermal Regeneration of Ammonium as a Basin-Scale Driver of Primary Productivity

Hydrothermal vents are important targets in the search for life on other planets due to their potential to generate key catalytic surfaces and organic compounds for biogenesis. Less well studied, however, is the role of hydrothermal circulation in maintaining a biosphere beyond its origin. In this study, we explored this question with analyses of organic carbon, nitrogen abundances, and isotopic ratios from the Paleoproterozoic Zaonega Formation (2.0 Ga), NW Russia, which is composed of interbedded sedimentary and mafic igneous rocks. Previous studies have documented mobilization of hydrocarbons, likely associated with magmatic intrusions into unconsolidated sediments. The igneous bodies are extensively hydrothermally altered. Our data reveal strong nitrogen enrichments of up to 0.6 wt % in these altered igneous rocks, suggesting that the hydrothermal fluids carried ammonium concentrations in the millimolar range, which is consistent with some modern hydrothermal vents. Furthermore, large isotopic offsets of ∼10‰ between organic-bound and silicate-bound nitrogen are most parsimoniously explained by partial biological uptake of ammonium from the vent fluid. Our results, therefore, show that hydrothermal activity in ancient marine basins could provide a locally high flux of recycled nitrogen. Hydrothermal nutrient recycling may thus be an important mechanism for maintaining a large biosphere on anoxic worlds.

Phosphate adsorption by riverborne clay sediments in a southern-Italy Mediterranean reservoir: Insights from a "natural geo-engineering" experiment

This paper reports data from a southern-Italy reservoir (Lake Occhito) characterized by a strong riverborne sediment transport. Main hydrochemical, trophic, and nutrient variables were measured (over a twelve-month period) in both lake and tributaries. Lacustrine sediments were subjected to mineralogical characterization and to phosphorus fractioning, while a 6-day long batch experiment was carried out to evaluate the lake sediment orthophosphate adsorption capacity. A set of algal growth potential tests was also undertaken on the lake and its tributaries. Results highlight the presence of a strong gradient in nutrient availability among the inflows. Most of the nutrient loads were from the main tributary (20.3 t P a^-1, ~83 %), that showed the highest trophic potential (average: 56.8 mg L^-1) and was nitrogen/phosphorus co-limited. The other inflows were phosphorus limited and characterized by a higher sediment transport. The lake showed the lowest nutrient concentrations (average total phosphorus: 21 μg P L^-1) and was strongly phosphorus limited. Clays were the principal minerals in the lake sediments (~51 %), while the main phosphorus fraction was apatite (~78 %). The batch experiment demonstrated the capability of the lake sediments to reduce orthophosphate concentrations in phosphorus-rich waters (initial orthophosphate: 320 μg P L^-1; ~80 % reduction). The lake sediment orthophosphate kinetics of abatement was similar to that of a commercially available phosphorus sorbent (lanthanum modified bentonite), although the stability of phosphorus binding was higher for the commercial product. Theoretical average in-lake total phosphorus, chlorophyll-a, and transparency values, estimated through Vollenweider models, were approximately double of the average values measured in the lake. Therefore, the massive presence of riverborne clay sediments seems to markedly reduce the in-lake orthophosphate concentrations (and light penetration), inducing an overall lowering of the lake trophic state, as if the lake ecosystem were permanently subjected to a geo-engineering phosphorus sorbent treatment.

Effects of nutrient limitation on cell growth, exopolysaccharide secretion and TEP production of Phaeocystis globosa

Phaeocystis globosa (P. globosa) often colonizes and produces mucus, which may cause massive blooms in coastal areas. To understand mechanism of the growth and the impact factors for better control of the bloom, we conducted a laboratory experiment on the effect of nitrogen (N) or phosphorus (P) limitation on the cell growth, production of exopolysaccharide (EPS), and transparent exopolymeric particles (TEP) of P. globosa. Results show no obvious differences in the N- and/or P-limitation in TEP production, polysaccharide secretion, and colony growth of P. globosa. Particularly in the death phase of the algae growth, the TEP production level in the experiment differed significantly, and was higher in the P-limitation group than that in the N-limitation group; additionally, the P-limitation group produced a relatively higher amount of EPS than N-limitation group, with greater cellular chlorophyll-a content, and in greater photosynthetic reaction rate of P. globosa cells, than those of the N-limitation group. However, under N-limited conditions, the algae colony survived longer. Under P-limited condition, P. globosa cells spend the photosynthesis-produced substances and energy for the secretion of extracellular substances but for cell reproduction, which was indicated by P. globosa cell growth and carbon content ratio between TEP and biomass.

Nutrient limitation of phytoplankton in three tributaries of Chesapeake Bay: Detecting responses following nutrient reductions

Many coastal ecosystems suffer from eutrophication, algal blooms, and dead zones due to excessive anthropogenic inputs of nitrogen (N) and phosphorus (P). This has led to regional restoration efforts that focus on managing watershed loads of N and P. In Chesapeake Bay, the largest estuary in the United States, dual nutrient reductions of N and P have been pursued since the 1980s. However, it remains unclear whether nutrient limitation - an indicator of restriction of algal growth by supplies of N and P - has changed in the tributaries of Chesapeake Bay following decades of reduction efforts. Toward that end, we analyzed historical data from nutrient-addition bioassay experiments and data from the Chesapeake Bay long-term water-quality monitoring program for six stations in three tidal tributaries (i.e., Patuxent, Potomac, and Choptank Rivers). Classification and regression tree (CART) models were developed using concurrent collections of water-quality parameters for each bioassay monitoring location during 1990-2003, which satisfactorily predicted the bioassay-based measures of nutrient limitation (classification accuracy = 96%). Predictions from the CART models using water-quality monitoring data showed enhanced nutrient limitation over the period of 1985-2020 at four of the six stations, including the downstream station in each of these three tributaries. These results indicate detectable, long-term water-quality improvements in the tidal tributaries. Overall, this research provides a new analytical tool for detecting signs of ecosystem recovery following nutrient reductions. More broadly, the approach can be adapted to other waterbodies with long-term bioassays and water-quality data sets to detect ecosystem recovery.

Ecoenzymatic stoichiometry reveals stronger microbial carbon and nitrogen limitation in biochar amendment soils: A meta-analysis

Soil extracellular enzyme activities of microbes to acquire carbon (C), nitrogen (N) and phosphorus (P) exert great roles on soil C sequestration and N, P availability. However, a lack of biochar-induced changes of C, N and P acquisition enzyme activities hinders us from understanding if biochar application will lead to microbial C, N and P limitation based on ecoenzymatic stoichiometry. In this study, through ecoenzymatic stoichiometry, a meta-analysis was conducted to evaluate responses of microbial metabolic limitation to biochar amendment by collecting data of ecoenzymatic activities (EEAs) of the C, N and P acquisition from peer-reviewed papers. The results showed that biochar application increased activities of C, N acquisition enzymes significantly by 9.3 % and 15.1 % on average, respectively. But the influence on P acquisition enzymes activities (Acid, neutral or alkaline phosphatase, abbreviated wholly as PHOS) was not significant. Biochar increased ratio of C acquisition enzymes activities (E_C) over P enzymes activities (E_P) and ratio of N enzymes activities (E_N) over E_P, but decreased E_C:E_N, indicating an increased N limitation or a shift from P limitation to N limitation in microbial metabolism. Enzyme vector analysis showed that soil microbial metabolism was limited by C relative to nutrients (N and P) under biochar amendment according to the overall increased vector length (~1.5 %). Wood biochar caused the strongest microbial C limitation, followed by crop residue biochar as indicated by increased enzyme vector length of 3.6 % and 1.2 % on average, respectively. The stronger microbial C limitation was also found when initial soil total organic carbon (SOC) was <20 g·kg^-1. Our results illustrated that available nitrogen and organic carbon should be provided to meet microbial stoichiometric requirements to improve plant productivity, especially in low fertile soils under biochar amendment.

Nutrient limitation regulates the properties of extracellular electron transfer and hydraulic shear resistance of electroactive biofilm

Understanding the roles of nutrient restriction in extracellular electron transfer (EET) and stability of mixed electroactive biofilm is essential in pollutant degradation and bioenergy production. However, the relevant studies are still limited so far. Herein, the effect of nutrient restriction on the EET pathways and stability of mixed electroactive biofilm was explored. It was found that the electroactive Pseudomonas and Geobacter genera were selectively enriched in the biofilms cultured under total nutrient and P-constrained conditions, and two EET pathways including direct and indirect were found, while Rhodopseudomonas genus was enriched in the N-constrained biofilm, which only had the direct EET pathway. Moreover, multiple analyses including 2D confocal Raman spectra revealed that P-constrained biofilm was rich in extracellular polymeric substances (EPS) especially for polysaccharide, presented a dense and uniform layered distribution, and had better stability than N-constrained biofilm with lower EPS and biofilm with heterostructures cultured under total nutrient conditions.

Plant traits and environment: floating leaf blade production and turnover of Nymphoides peltata (S.G. Gmel.) O. Kuntze (Menyanthaceae)

Background

Nymphaeid macrophytes, rooting in the sediment of water bodies and characterized by floating leaves, play an important role in wetland ecosystems. The present research deals with the effects of limited space, limited nutrient availability, water temperature and an unexpected inundation on the production, turnover and plasticity of floating leaves of the globally widespread species Nymphoides peltata (Fringed waterlily).

Methods

The effects of these environmental conditions were studied in two plots in outdoor concrete tanks (CT1, CT2, mesocosms simulating occurrence in small ponds) and in two plots in the floodplain oxbow lake Bemmelse Strang (BS1, BS2). Plot CT1 was situated in a stand coexisting with helophytes, plot CT2 in a monospecific stand, plot BS1 in the center and plot BS2 at the open water border of a monospecific stand. All floating leaf blades within the plots were marked at appearance at the water surface and subsequently length, width and damage of each leaf and maximum and minimum water temperatures were measured bi-weekly. Area and biomass of leaf blades were calculated based on leaf length and width and were used to calculate turnover rates and production.

Results

The growth period started in May and ended mid-October with continuous production of floating leaves during nearly the whole vegetation period. In the tanks the water level was very stable, but the lake underwent an inundation by river water, causing a sudden loss of existing leaves. Considering environmental conditions and based on the assumed ranking from low to high nutrient availability, the ranking of the plots was CT1, CT2, BS1, BS2. This order was found for maximum leaf life span and maximum leaf length, and the reverse order was found for number of leaves, new leaves per day and duration of the vegetation period. Turnover rates appeared to be relatively similar for plots CT1, CT2 and BS1, but for the deeper border plot BS2 lower ratios were found. These results indicate that increased enclosure with expected nutrient limitation causes (1) the production of high numbers of small leaves with larger totals for leaf area and biomass, (2) a shift towards increased sexual reproduction by the production of more flowering stem leaves.

Fire does not transform shrublands of Echinospartum horridum (Vahl) Rothm. into grasslands in the Pyrenees: Development of community structure and nutritive value after single prescribed burns

Prescribed fire has been extensively used in recent years to control woody encroachment into mountain and other grassland-dominated landscapes. In the Aragon Pyrenees, prescribed burns have been mainly used to remove the native thorny shrub Echinospartum horridum (Vahl) Rothm., whose populations are spreading to the detriment of grasslands. To study the effectiveness of the burning of E. horridum to preserve grasslands for livestock grazing, the vegetation of six sites burned 0.5, 2, 3, 6, 15 and 35 years ago was sampled and compared with that of nearby unburned shrubland (control) and grassland (reference). In addition, the nutritional quality of E. horridum was examined and compared to that of the reference grassland to evaluate to what extent shrub growth can be controlled by herbivores after burning. Initial shrub cover recovered as early as 15 years after fire, with E. horridum being dominant. Plant diversity was greatest at intermediate number of years after fire. Initial floristic composition and life-form spectrum were restored 15-35 years after burning. Echinospartum horridum exhibited early lignification that restricts its availability as a palatable forage for the first two years after burning and makes it unlikely to be consumed thereafter, highlighting the difficulty in controlling the expansion of this species by livestock herbivory. The analysis of the nutrient levels suggested an increased shortage of limiting elements, such as phosphorus or sulfur, in the mid-term after burning due to substantial nutrient losses and exports during and after the burn. Our results question the suitability and sustainability of a single prescribed burn as management tool alone to control the expansion of E. horridum and call for caution in its application for fighting shrub encroachment in the Central Pyrenees.

Responses of environmental and soil enzyme stoichiometric characteristics of wheat cropping system to fertilizer management in rain-fed areas of China

The application of organic fertilizer can improve soil fertility and maintain soil biodiversity. Soil enzyme activity can reflect the relationship between microbial nutrient demand and environmental nutrient availability. The experiment was established with a split-plot design, which included two main plots and two subplots. The main plots were 3 nitrogen levels (0, 150, 300 kg N ha^-1). The two subplots were chemical fertilizer alone and combination of manure and inorganic application; the soil enzyme activity and chemical properties of each treatment were measured and analyzed. In the study, ecological enzyme stoichiometry was used to study the limitation of microbial resources in dryland wheat system. The results showed that the combined application of manure and chemical fertilizers did not significantly increase the activities of soil C, N and P cycling-related enzymes but decreased the activities of soil L-leucine aminopeptidase (LAP). Long-term application of organic fertilizer and mineral fertilizer significantly increased the accumulation of soil organic carbon (SOC) and nitrogen (TN) and increased soil microbial biomass (MBC, MBN). Organic fertilizer treatment significantly increased soil available phosphorus (AP) and soil NO₃^--N contents, and decreased SOC/AP and TN/AP, but had no significant changes under different nitrogen application levels (N0, N1, N2). GHG emissions were increaseed with the amount of nitrogen applied, the addition of manure did not significantly increase the CO₂ and N₂O emissions, and soil organic matter mineralization and gas emission fluxes decreased at ripen stage. The C-acquiring enzyme was negatively correlated with N-acquiring enzyme but positively correlated with P-acquiring enzyme. The microbial limiting effect of C and P on microbial metabolism becomes increasingly intense as the reproductive period progresses. Redundancy analysis of soil enzyme activities and chemical properties showed that soil TN and MBN could better explain the variation characteristics of soil enzyme activities. Therefore, the study of soil extracellular enzyme stoichiometry and microbial nutrient restriction can give us a more comprehensive understanding of the soil environment. There are more implications can be given under different nitrogen management modes and different growth stages. The results also provided an effective theoretical basis for regulating the changes of soil microbial environment.

Nutrient starvation intensifies chlorine disinfection-stressed biofilm formation

Bacterial surface attachment and subsequent biofilm expansion represent an essential adaptation to environmental signals and stresses, which are of great concern for many natural and engineered ecosystems. Yet the underlying mechanisms and driving forces of biofilm formation in a chlorinated and nutrient-restricted system remain sketchy. In this study, we coupled an experimental investigation and modeling simulation to understand how chlorination and nutrient limitation conspire to form biofilm using Pseudomonas aeruginosa as a model bacterium. Experimental results showed that moderate chlorination at 1.0 mg/L led to biofilm development amplified to 2.6 times of those without chlorine, while additional nutrient limitation (of 1/50-diluted or 0.4 g/L LB broth culture) achieved 4.6 times increment as compared to those of undiluted scenarios (of 20 g/L LB broth culture) with absence of chlorination after 24 h exposure. Meanwhile, intermediate chlorination stimulated instant flagellar motility and subsequently extracellular polymeric substances (EPS) secretion, particularly under limited nutrient condition (of 1/50-diluted or 0.4 g/L LB broth culture) that retarded chlorine consumption and provoked bacterial nutrient-limitation response. From our simulations, chlorine and resource levels along with associated spatio-temporal variations collectively drove bacterial cell movement and EPS excretion. Our results demonstrated that restraining nutrient intensified chlorination-excited cell movement and EPS production that reinforced biological and cell-surface interactions, thereby encouraging bacterial surface attachment and subsequent biofilm development. The findings provide the insights into the linkage of disinfectant and nutrient-regulated bacterial functional responses with consequent micro-habitats and biofilm dynamics.

Foliar nutrient concentrations of six northern hardwood species responded to nitrogen and phosphorus fertilization but did not predict tree growth

Foliar chemistry can be useful for diagnosing soil nutrient availability and plant nutrient limitation. In northern hardwood forests, foliar responses to nitrogen (N) addition have been more often studied than phosphorus (P) addition, and the interactive effects of N and P addition have rarely been described. In the White Mountains of central New Hampshire, plots in ten forest stands of three age classes across three sites were treated annually beginning in 2011 with 30 kg N ha^-1 y^-1 or 10 kg P ha^-1 y^-1 or both or neither-a full factorial design. Green leaves of American beech (Fagus grandifolia Ehrh.), pin cherry (Prunus pensylvanica L.f.), red maple (Acer rubrum L.), sugar maple (A. saccharum Marsh.), white birch (Betula papyrifera Marsh.), and yellow birch (B. alleghaniensis Britton) were sampled pre-treatment and 4-6 years post-treatment in two young stands (last cut between 1988-1990), four mid-aged stands (last cut between 1971-1985) and four mature stands (last cut between 1883-1910). In a factorial analysis of species, stand age class, and nutrient addition, foliar N was 12% higher with N addition (p < 0.001) and foliar P was 45% higher with P addition (p < 0.001). Notably, P addition reduced foliar N concentration by 3% (p = 0.05), and N addition reduced foliar P concentration by 7% (p = 0.002). When both nutrients were added together, foliar P was lower than predicted by the main effects of N and P additions (p = 0.08 for N × P interaction), presumably because addition of N allowed greater use of P for growth. Foliar nutrients did not differ consistently with stand age class (p ≥ 0.11), but tree species differed (p ≤ 0.01), with the pioneer species pin cherry having the highest foliar nutrient concentrations and the greatest responses to nutrient addition. Foliar calcium (Ca) and magnesium (Mg) concentrations, on average, were 10% (p < 0.001) and 5% lower (p = 0.01), respectively, with N addition, but were not affected by P addition (p = 0.35 for Ca and p = 0.93 for Mg). Additions of N and P did not affect foliar potassium (K) concentrations (p = 0.58 for N addition and p = 0.88 for P addition). Pre-treatment foliar N:P ratios were high enough to suggest P limitation, but trees receiving N (p = 0.01), not P (p = 0.64), had higher radial growth rates from 2011 to 2015. The growth response of trees to N or P addition was not explained by pre-treatment foliar N, P, N:P, Ca, Mg, or K.

Changes in soil total, microbial and enzymatic C-N-P contents and stoichiometry with depth and latitude in forest ecosystems

Soil microorganisms and their extracellular enzymes are key factors determining the biogeochemical cycles of carbon (C), nitrogen (N) and phosphorus (P). Relevant studies mainly focus on surface soils (0-20 cm), while deep soils (>20 cm) are often neglected, let alone comparing multiple ecosystems simultaneously. In this study, we studied the latitudinal (19-48°N) and vertical (0-100 cm) patterns of soil total, microbial and enzymatic C-N-P contents and ratios (stoichiometry) in eight temperate, subtropical and tropical forest ecosystems in eastern China. We found that the C-N-P contents and their stoichiometry in soil, microbial biomass and extracellular enzymes all varied significantly with depth and latitude. Soil total C, N and P declined with depth, as did microbial biomass and enzyme activity, while microbial and enzymatic C:N ratios showed increasing or no trend with increasing soil depth. Moreover, soil total and microbial C-N-P contents in surface soils (0-20 cm) showed positive correlations with increasing latitude, and such correlations tended to be weaker or disappeared in deep soils (>20 cm). Overall, changes in total, microbial and enzymatic C-N-P contents and ratios among latitudes suggested a shift from relative N limitation in the north to relative P limitation in the south.

Soil fertility and water availability effects on trait dispersion and phylogenetic relatedness of tropical terrestrial ferns

Analysis of plant functional traits and their phylogenetic relationships has shed light on the processes structuring the occurrence patterns of angiosperm taxa across environmental gradients. In montane tropical forests, angiosperms coexist with diverse communities of terrestrial ferns, with distinct evolutionary histories, leaf morphology, and reproductive systems. Here we examined the functional traits, functional dispersion, and phylogenetic diversity of ferns across a well-described gradient of moisture and soil nutrient availability in a premontane tropical rainforest in western Panama. We measured 15 functional traits from 33 terrestrial fern species occurring in 12 one-ha plots. We applied RLQ and fourth-corner analyses to assess relationships between trait and environmental variables and used beta regression to evaluate how functional dispersion responds to environmental factors. In addition, we analyzed trait distributions with respect to fern phylogeny. We found that functional composition was predicted by soil variables and dry season rainfall. Leaf phosphorus (P) increased and leaf carbon (C) to nitrogen (N) ratio decreased with increasing soil total N:P ratio. Functional dispersion decreased with increasing soil total N:P in wet sites and with increasing manganese in dry sites, suggesting that low soil fertility and dry season moisture stress both tend to reduce functional diversity. Traits exhibited phylogenetic clustering primarily at deep nodes associated with tree versus herbaceous fern clades. Our results indicate that environmental filtering of functional traits affects ferns in a similar way to angiosperms and highlight the association of the early tree fern clade with low fertility soils.

The role of biodiversity in mitigating the effects of nutrient limitation and short-term rotations in plantations of subtropical China

Species diversity plays an essential role in enhancing ecosystem functions (EF) in both natural and plantation forests. However, we do not fully understand whether species diversity could maintain the sustainability of EFs in multiple-rotation plantations. Here, we hypothesized that tree species mixtures could mitigate declines in EFs along successive rotations, but could not maintain ecosystem multifunctionality. To test our hypothesis, we examined the effects of species diversity on four EFs, i.e., aboveground biomass (AGB), soil available nitrogen (SAN) and phosphorus (SAP), and soil organic matter (SOM), based on pure model simulation in plantations of subtropical China. The model fusion framework was set up by the integration of the process-based FORECAST and Multivariate Diversity-Interactions models. In the simulation, four local typical plantation tree species (two conifers, one evergreen broadleaf, and one deciduous N-fixing broadleaf) were selected and combined to form four monoculture and 11 mixture stands, and for each stand, the simulation was made for four 25-year rotations. The results showed that all the four EFs declined with the progress of rotations in both monoculture and mixtures, and the declining range was larger in monoculture than in mixtures in each rotation. Particularly, SAP significantly decreased while AGB, SAN, and SOM increased with diversity evenness from 0 (monoculture) to 1 (four species being equal abundant in the mixture). Overall, SAP and AGB displayed higher sensitivity to the disturbance of successive rotations compared with SAN and SOM. These results suggest that mixing species could not maintain EFs along with successive rotations because it could not alleviate SAP deficiencies in the soils resulted from the disturbances of silvicultural measures.

Changes in microbial metabolic C- and N- limitations in the rhizosphere and bulk soils along afforestation chronosequence in desertified ecosystems

The resource acquisition strategy of soil microorganisms can be reflected by soil extracellular enzyme activity (EEA). However, there are few reports on the application of extracellular enzyme stoichiometry (EES) method to study the difference in microbial metabolic nutrient limitation between rhizosphere and bulk soil. Here, we choose the rhizosphere and bulk soils of Pinus sylvestris var. mongolica (P. sylvestris) plantations with five stand ages in the Mu Us sandy land, and analyzed the variation and differences of microbial metabolic limitation between rhizosphere and bulk soils with stand age by EES method. The results showed that the microbial metabolic C-limitation in the rhizosphere and bulk soil gradually increased with stand age. Almost all the vector angles were less than 45°, which indicated that the soil microbial metabolism was relatively limited by N rather than P. Furthermore, the microbial C- and N-limitation in rhizosphere soils were generally stronger than bulk soils. Soil physical properties (59.73%) explained most of the variations in soil EES based on the variation-partitioning analysis, followed by total nutrients (43.00%). The partial least squares path model suggested that the main driving factor for the variation of soil microbial metabolic C-limitation in the rhizosphere and bulk soils was physical properties, while the microbial N-limitation was for total nutrients. In general, the study emphasized the application of EES methods to assess the dynamic equilibrium between soil microbial resource acquisition and nutrient availability in desert ecosystems. These insights provide guidance for formulating afforestation strategies, such as nutrient management of sandy plantations.

Dynamic mathematical model development and validation of in vitro Mycobacterium smegmatis growth under nutrient- and pH-stress

Mycobacterium tuberculosis can exist within a host for lengthy periods, tolerating even antibiotic challenge. This non-heritable, antibiotic tolerant "persister" state, is thought to underlie latent Tuberculosis (TB) infection and a deeper understanding thereof could inform treatment strategies. In addition to experimental studies, mathematical and computational modelling approaches are widely employed to study persistence from both an in vivo and in vitro perspective. However, specialized models (partial differential equations, agent-based, multiscale, etc.) rely on several difficult to determine parameters. In this study, a dynamic mathematical model was developed to predict the response of Mycobacterium smegmatis (a model organism for M. tuberculosis) grown in batch culture and subjected to a range of in vitro environmental stresses. Lag phase dynamics, pH variations and internal nitrogen storage were mechanistically modelled. Experimental results were used to train model parameters using global optimization, with extensive subsequent model validation to ensure extensibility to more complex modelling frameworks. This included an identifiability analysis which indicated that seven of the thirteen model parameters were uniquely identifiable. Non-identifiable parameters were critically evaluated. Model predictions compared to validation data (based on experimental results not used during training) were accurate with less than 16% maximum absolute percentage error, indicating that the model is accurate even when extrapolating to new experimental conditions. The bulk growth model can be extended to spatially heterogeneous simulations such as an agent-based model to simulate in vitro granuloma models or, eventually, in vivo conditions, where distributed environmental conditions are difficult to measure.

High probability of nitrogen and phosphorus co-limitation occurring in eutrophic lakes

Limnologists and governments have long had an interest in whether nitrogen (N) and/or phosphorous (P) limit algal productivity in lakes. However, the types and importance of anthropogenic and biogeochemical processes of N and P differ with lake trophic status. Here, a global lake dataset (annual average data from 831 lakes) demonstrates that total nitrogen (TN): total phosphorous (TP) ratios declined significantly as lakes become more eutrophic. From oligotrophic to hypereutrophic lakes, the probability of N and P co-limitation significantly increases from 15.0 to 67.0%, while P-only limitation decreases from 77.0 to 22.3%. Furthermore, TN:TP ratios are mainly affected by concentrations of TP (r = -0.699) rather than TN (r = -0.147). These results reveal that lake eutrophication mainly occurs with increasing P rather than N, which shifts lake ecosystems from stoichiometric P limitation toward a higher probability of N and P co-limitation. This study suggests that low N:P stoichiometry and a high probability of N and P co-limitation tend to occur in eutrophic systems.

Differential effects of nitrogen vs. phosphorus limitation on terrestrial carbon storage in two subtropical forests: A Bayesian approach

Nitrogen (N) and phosphorus (P) have been demonstrated to limit terrestrial carbon (C) storage in terrestrial ecosystems. However, the reliable indicator to infer N and P limitation are still lacking, especially in subtropical forests. Here we used a terrestrial ecosystem (TECO) model framework in combination with a Bayesian approach to evaluate effects of nutrient limitation from added N/P processes and data sets on C storage capacities in two subtropical forests (Tiantong and Qianyanzhou [QYZ]). Three of the six simulation experiments were developed with assimilating data (TECO C model with C data [C-C], TECO C-N coupling model with C and N data [CN-CN], and TECO C-N-P model with C, N, and P data [CNP-CNP]), and the other three ones were simulated without assimilating data (C-only, CN-only, and CNP-only). We found that P dominantly constrained C storage capacities in Tiantong (42%) whereas N limitation decreased C storage projections in QYZ (44%). Our analysis indicated that the stoichiometry of wood biomass and soil microbe (e.g., N:P ratio) were more sensitive indicators of N or P limitation than that of other pools. Furthermore, effects of P-induced limitation were mainly on root biomass by additional P data and on both metabolic litter and soil organic carbon (SOC) by added P processes. N-induced effects were mainly from added N data that limited plant non-photosynthetic tissues (e.g., woody biomass and litter). The different effects of N and P modules on C storage projections reflected the diverse nutrient acquisition strategies associated with stand ages and plant species under nutrient stressed environment. These findings suggest that the interaction between plants and microorganisms regulate effects of nutrient availability on ecosystem C storage, and stoichiometric flexibility of N and P in plant and soil C pools could improve the representation of N and P limitation in terrestrial ecosystem models.

Variation of soil microbial carbon use efficiency (CUE) and its Influence mechanism in the context of global environmental change: a review

Soil microbial carbon utilization efficiency (CUE) is the efficiency with which microorganisms convert absorbed carbon (C) into their own biomass C, also referred to as microorganism growth efficiency. Soil microbial CUE is a critical physiological and ecological parameter in the ecosystem’s C cycle, influencing the processes of C retention, turnover, soil mineralization, and greenhouse gas emission. Understanding the variation of soil microbial CUE and its influence mechanism in the context of global environmental change is critical for a better understanding of the ecosystem’s C cycle process and its response to global changes. In this review, the definition of CUE and its measurement methods are reviewed, and the research progress of soil microbial CUE variation and influencing factors is primarily reviewed and analyzed. Soil microbial CUE is usually expressed as the ratio of microbial growth and absorption, which is divided into methods based on the microbial growth rate, microbial biomass, substrate absorption rate, and substrate concentration change, and varies from 0.2 to 0.8. Thermodynamics, ecological environmental factors, substrate nutrient quality and availability, stoichiometric balance, and microbial community composition all influence this variation. In the future, soil microbial CUE research should focus on quantitative analysis of trace metabolic components, analysis of the regulation mechanism of biological-environmental interactions, and optimization of the carbon cycle model of microorganisms’ dynamic physiological response process.

Accumulation of starch in duckweeds (Lemnaceae), potential energy plants

Starch can accumulate in both actively growing vegetative fronds and over-wintering propagules, or turions of duckweeds, small floating aquatic plants belonging to the family of the Lemnaceae. The starch synthesizing potential of 36 duckweed species varies enormously, and the starch contents actually occurring in the duckweed tissues are determined by growth conditions, various types of stress and the action of growth regulators. The present review examines the effects of phytohormones and growth retardants, heavy metals, nutrient deficiency and salinity on the accumulation of starch in duckweeds with a view to obtaining high yields of starch as a feedstock for biofuel production. Biotechnological approaches to degrading duckweed starch to its component sugars and the fermentation of these sugars to bio-alcohols are also discussed.

Nitrogen removal through oyster cultivation: Integration with artificial fertilization makes it more efficient

The use of bivalve aquaculture to mitigate eutrophication in coastal waters has been proposed for years. As nitrogen overenrichment is usually accompanied by comparative shortages in silicate and phosphate, bivalve cultivation integrated with artificial fertilization may exhibit better nitrogen removal performance than bivalve cultivation alone. During a 15-day mesocosm experiment in a nitrogen-eutrophicated, phosphate-limited coastal pond, the nitrogen fixation in oyster tissue under rice husk ash (RHA)¹ fertilized conditions was 10 times higher than that in the oyster-only treatments with the same density. Meanwhile, the concentrations of dissolved inorganic nitrogen (DIN) and particulate nitrogen (PN) in the combined oyster-fertilization treatments decreased by 87.0% and 57.2%, respectively. Compared with the RHA fertilization treatments, the net DIN consumption was significantly lower and decreased with the oyster density in the oyster-only treatments. The dissolved N/Si ratio decreased from 1.44 to 1.01 and 0.93 in the control and fertilization treatments, respectively, whereas in the oyster-only treatments, it increased to 3.74 at low density and 29.15 at high density. Our results indicate that oyster cultivation can stimulate the regeneration of nitrogen in dissolved forms and intensify relative silicate shortages. The integration of RHA fertilization mediated silicate shortage and helped maintain a balanced dissolved N/Si ratio. Moreover, the combined oyster-RHA fertilization enhanced nitrogen removal efficiency and biomass accumulation and increased the feasibility of oyster cultivation as a cost-effective nitrogen reduction measure.

An assessment of the temporal alterations in the trophic status and habitat heterogeneity of the anthropogenically influenced Bhagirathi-Hooghly estuary in reference to phytoplankton community and environmental variables

The Bhagirathi-Hooghly estuary represents one of the most populated estuaries in the Indian subcontinent with dense settlements along its course. The concomitant high anthropogenic influences and enhancement of nutrient load due to uncontrolled discharges from non-point source in monsoon play important role in habitat variability and consequential changes in the water quality of the estuary. Even though such nutrient loadings are expected to cause significant changes in the ecosystem functioning, a documentation of the habitat heterogeneity has largely remained unavailable from this important yet unmonitored estuary. Thus, the present work aims at assessment of water quality and trophic status of the habitat by application of a combination of abiotic and phytoplankton-specific indices as recommended by different international and national authorities. Results suggest that water quality deteriorated during periods of seasonal precipitation due to enhanced nutrient loadings that culminated in altering the trophic status of habitat. Comparisons with regard to international standards further corroborated the influence of seasonal precipitation on water quality and trophic status of the habitat. Phytoplankton functional groups largely reflected the changing nature of the habitat well, with dominance of those taxa that are more persistent under warm, nutrient replete shallow euphotic depths of the habitat. These findings further suggest that it is essential to regularly monitor the health of this estuarine ecosystem to as to sustain the different life forms that will be essential for the livelihood of people in this area.

Enhancing yeast growth with carboxylates under multiple nutrient limitations

Yeast cell death is triggered when essential nutrients such as potassium and lipid are limited but ammonium is in excess. When ammonium and glucose were maintained at 100% of the normal concentration while all the other essential nutrients in yeast nitrogen base (YNB) were reduced to 2%, yeast growth was halted by ammonium toxicity. Yeast started to grow again when either ammonium was also reduced to 2% or gluconate was added, but simultaneously adding gluconate as well as reducing all the nutrients except glucose 50-fold revived yeast growth to a greater extent, i.e. a quarter of the normal growth. Gluconate, as well as formate and alginate, stimulated yeast growth by buffering the drop in pH. Yeast cells were seemingly more susceptible to low pH under the nutrient-limited conditions, entering the stationary phase at pH higher than that of the normal condition. Carboxylate salts may prove a cost-efficient replacement for large proportions of the essential nutrients as yeast cells, in the presence of 2 mg ml^-1 gluconate, could still achieve nearly 90% of the normal growth when cultured in only 10% of the normal YNB concentration.

The impact of abiotic factors on the growth and lipid accumulation of some green microalgae for sustainable biodiesel production

Three species of freshwater planktonic green microalgae: Ankistrodesmus braunii, Ankistrodesmus falcatus, and Scenedesmus incrassatulus, were isolated from the Nile water in Upper Egypt. These microalgae were exposed to nutritional (nitrogen, phosphorus, and iron) limitations and salinity stress to study their effects on the algal growth and to elevate the lipid content within their cells. The results indicated that exposure to these conditions had a significant impact on the algal growth. The lipid content of the studied algae increased as a result of the salinity stress. The highest lipid content was recorded in A. braunii culture treated with 50 mM NaCl (34.4% of dry weight) and S. incrassatulus cultures treated with 100 mM NaCl (37.7% of dry weight) on the 6th day of cultivation, while the culture of A. falcatus treated with 100 mM NaCl recorded the maximum lipid content (53% of dry weight) on the 10th day of the experiment. The biodiesel quality parameters of the fatty acid methyl ester profile of S. incrassatulus appeared to be in agreement with the international criteria. S. incrassatulus could be regarded as a quite promising feedstock for the biodiesel production.

Understanding controls on Margalefidinium polykrikoides blooms in the lower Chesapeake Bay

A time-dependent model of Margalefidinium polykrikoides, a mixotrophic dinoflagellate, cell growth was implemented to assess controls on blooms in the Lafayette River, a shallow, tidal sub-tributary of the lower Chesapeake Bay. Simulated cell growth included autotrophic and heterotrophic contributions. Autotrophic cell growth with no nutrient limitation resulted in a bloom but produced chlorophyll concentrations that were 45% less than observed bloom concentrations (~80 mg Chl m^-3 vs. 145 mg Chl m^-3) and a bloom progression that did not match observations. Excystment (cyst germination) was important for bloom initiation, but did not influence the development of algal biomass or bloom duration. Encystment (cyst formation) resulted in small losses of biomass throughout the bloom but similarly, did not influence M. polykrikoides cell density or the duration of blooms. In contrast, the degree of heterotrophy significantly impacted cell densities achieved and bloom duration. When heterotrophy contributed a constant 30% to cell growth, and dissolved inorganic nitrogen was not limiting, simulated chlorophyll concentrations were within those observed during blooms (maximum ~140 mg Chl m^-3). However, nitrogen limitation quenched the maximum chlorophyll concentration by a factor of three. Specifying heterotrophy as an increasing function of nutrient limitation, allowing it to contribute up to 50% and 70% of total growth, resulted in simulated maximum chlorophyll concentrations of 90 mg Chl m^-3 and 180 mg Chl m^-3, respectively. This suggested that blooms of M. polykrikoides in the Lafayette River are fortified and maintained by substantial heterotrophic nutritional inputs. The timing and progression of the simulated bloom was controlled by the temperature range, 23 °C to 28 °C, that supports M. polykrikoides growth. Temperature increases of 0.5 °C and 1.0 °C, consistent with current warming trends in the lower Chesapeake Bay due to climate change, shifted the timing of bloom initiation to be earlier and extended the duration of blooms; maximum bloom magnitude was reduced by 50% and 65%, respectively. Warming by 5 °C suppressed the summer bloom. The simulations suggested that the timing of M. polykrikoides blooms in the Lafayette River is controlled by temperature and the bloom magnitude is determined by trade-offs between the severity of nutrient limitation and the relative contribution of mixotrophy to cell growth.

Biofouling control: the impact of biofilm dispersal and membrane flushing

Pure culture studies have shown that biofilm dispersal can be triggered if the nutrient supply is discontinued by stopping the flow. Stimulating biofilm dispersal in this manner would provide a sustainable manner to control unwanted biofilm growth in industrial settings, for instance on synthetic membranes used to purify water. The response of multispecies biofilms to nutrient limitation has not been thoroughly studied. To assess biomass dispersal during nutrient limitation it is common practise to flush the biofilm after a stop-period. Hence, flow-stop-induced biomass removal could occur as a response to nutrient limitation followed by mechanical removal due to biofilm flushing (e.g. biofilm detachment). Here, we investigated the feasibility to reduce membrane biofouling by stopping the flow and flushing the membrane. Using a membrane fouling simulator, biomass removal from synthetic membranes after different stop-periods was determined, as well as biomass removal at different cross flow velocities. Biomass removal from membrane surfaces depended on the nutrient limiting period and on the flow velocity during the biofilm flush. When flushed at a low flow velocity (0.1 m.s^-1), the duration of the stop-period had a large effect on the biomass removal rate, but when the flow velocity was increased to 0.2 m.s^-1, the length of the stop period became less considerable. The flow velocity during membrane flushing has an effect on the bacterial community that colonized the membranes afterwards. Repetition of the stop-period and biofilm flushing after three repetitive biofouling cycles led to a stable bacterial community. The increase in bacterial community stability coincided with a decrease in cleaning effectivity to restore membrane performance. This shows that membrane cleaning comes at the costs of a more stable bacterial community that is increasingly difficult to remove.

Coexistence of multiple leaf nutrient resorption strategies in a single ecosystem

Leaf resorption is critical for considerations of how plants use and recycle nutrients, but fundamental unknowns remain regarding the controls over plant nutrient resorption. Empirical studies suggest at least three basic types of resorption control, including (i) stoichiometric control, (ii) nutrient limitation control, and (iii) nutrient concentration control strategies. However, which strategies are adopted in given conditions and whether multiple strategies coexist in an ecosystem are still open questions. To address these unknowns, leaf nitrogen (N) and phosphorus (P) resorption efficiency (NRE and PRE) and proficiency were measured for seven woody species at a nutrient-rich but potentially N-limited secondary forest and a nutrient-poor and potentially P-limited secondary forest. NRE was higher in the N-limited forest while PRE was higher in the P-limited forest, suggesting that plants responded to nutrient limitation with preferential resorption of the more limiting nutrient. NRE:PRE was positively related to leaf N:P ratios within each forest, demonstrating a role for stoichiometric control. Nutrient concentration controls were also found, with higher nutrient resorption proficiency in the nutrient-poor forest than in the nutrient-rich forest. The controls of stoichiometry and nutrient concentration were community-wide, but the nutrient limitation control was species-specific. Our results highlight the coexistence of multiple nutrient resorption strategies in a single ecosystem, and suggest these strategies are scale-dependent.

Effect of growth conditions on cell wall composition and cadmium adsorption in Chlorella vulgaris: A new approach to biosorption research

Biosorption of toxic metals in microalgae is a process relying on the presence of cell wall reactive groups acting as binding sites. This work studied the effect of culture conditions on the outer cell wall composition of C. vulgaris and cadmium biosorption. The experiments were conducted in continuous culture under light and nitrogen limitation at two growth rates (0.4 and 0.2 d^-1). Functional groups were profiled using ATR-FTIR spectrometry, and total cadmium biosorption was assayed. Significant differences in composition were attested the most salient being the absence of carboxyl groups in the light deprived states and a larger number of carbohydrates and amino groups in the nitrogen deprived cultures, particularly amino groups from deacetylated D-glucosamine polysaccharides. Higher biosorption was obtained with the nitrogen-restricted biomass, reaching a maximum of 11.9 mg_Cd/g_biomass, as compared to a minimum of 8.0 mg_Cd/g_biomass achieved in the light-restricted states. The increased biosorption exhibited by nitrogen-restricted strains was attributed to the deacetylated amino groups that have enhanced cation affinity. This work has shown that the characteristics of the outer cell wall can be engineered by culture conditions to improve biosorption, providing a new approach that opens up new research frontiers for the biosorption of hazardous metals.

Dark adaptation and ability of pulse-amplitude modulated (PAM) fluorometry to identify nutrient limitation in the bloom-forming cyanobacterium, Microcystis aeruginosa (Kützing)

Harmful algal blooms in inland waters are widely linked to excess phosphorus (P) loading, but increasing evidence shows that their growth and formation can also be influenced by nitrogen (N) and iron (Fe). Deficiency in N, P, and Fe differentially affects cellular photosystems and is manifested as changes in photosynthetic yield (F_v/F_m). While F_v/F_m has been increasingly used as a rapid and convenient in situ gauge of nutrient deficiency, there are few rigorous comparisons of instrument sensitivity and ability to resolve specific nutrient stresses. This study evaluated the application of F_v/F_m to cyanobacteria using controlled experiments on a single isolate and tested three hypotheses: i) single F_v/F_m measurements taken with different PAM fluorometers can distinguish among limitation by different nutrients, ii) measurements of F_v/F_m made by the addition of DCMU are comparable to PAM fluorometers, and iii) dark adaptation is not necessary for reliable F_v/F_m measurements. We compared F_v/F_m taken from the bloom-forming Microcystis aeruginosa (UTEX LB 3037) grown in nutrient-replete treatment (R) and N-, P-, and Fe-limited treatments (LN, LP, LFe, respectively), using three pulse-amplitude modulated (PAM) fluorometers and the chemical photosynthesis inhibitor 3-(3,4-dichlorophenyl)-1,1-dimethylurea (DCMU), and evaluated the effects of dark adaptation prior to PAM measurement. There were significant differences in F_v/F_m estimates among PAM fluorometers for light- versus dark-adapted cell suspensions over the whole experiment (21 days), which were all significantly higher than the DCMU-based measurements. However, dark adaptation had no effect on F_v/F_m when comparing PAM-based values across a single nutrient treatment. All F_v/F_m methods could distinguish LN and LP from R and LFe treatments but none were able to resolve LFe from R, or LN from LP cultures. These results indicated that for most PAM applications, dark adaptation is not necessary, and furthermore that single measurements of F_v/F_m do not provide a robust measurement of nutrient limitation in Microcystis aeruginosa UTEX LB 3037, and potentially other, common freshwater cyanobacteria.