1
|
Dong K, Liu WC, Su Y, Lyu Y, Huang H, Zheng N, Rogers JA, Nan K. Scalable Electrophysiology of Millimeter-Scale Animals with Electrode Devices. BME FRONTIERS 2023; 4:0034. [PMID: 38435343 PMCID: PMC10907027 DOI: 10.34133/bmef.0034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Accepted: 11/08/2023] [Indexed: 03/05/2024] Open
Abstract
Millimeter-scale animals such as Caenorhabditis elegans, Drosophila larvae, zebrafish, and bees serve as powerful model organisms in the fields of neurobiology and neuroethology. Various methods exist for recording large-scale electrophysiological signals from these animals. Existing approaches often lack, however, real-time, uninterrupted investigations due to their rigid constructs, geometric constraints, and mechanical mismatch in integration with soft organisms. The recent research establishes the foundations for 3-dimensional flexible bioelectronic interfaces that incorporate microfabricated components and nanoelectronic function with adjustable mechanical properties and multidimensional variability, offering unique capabilities for chronic, stable interrogation and stimulation of millimeter-scale animals and miniature tissue constructs. This review summarizes the most advanced technologies for electrophysiological studies, based on methods of 3-dimensional flexible bioelectronics. A concluding section addresses the challenges of these devices in achieving freestanding, robust, and multifunctional biointerfaces.
Collapse
Affiliation(s)
- Kairu Dong
- College of Pharmaceutical Sciences,
Zhejiang University, Hangzhou 310058, China
- National Key Laboratory of Advanced Drug Delivery and Release Systems,
Zhejiang University, Hangzhou 310058, China
- College of Biomedical Engineering & Instrument Science,
Zhejiang University, Hangzhou, 310027, China
| | - Wen-Che Liu
- College of Pharmaceutical Sciences,
Zhejiang University, Hangzhou 310058, China
- National Key Laboratory of Advanced Drug Delivery and Release Systems,
Zhejiang University, Hangzhou 310058, China
| | - Yuyan Su
- College of Pharmaceutical Sciences,
Zhejiang University, Hangzhou 310058, China
- Department of Gastroenterology, Brigham and Women’s Hospital,
Harvard Medical School, Boston, MA 02115, USA
| | - Yidan Lyu
- College of Pharmaceutical Sciences,
Zhejiang University, Hangzhou 310058, China
| | - Hao Huang
- College of Pharmaceutical Sciences,
Zhejiang University, Hangzhou 310058, China
- College of Chemical and Biological Engineering,
Zhejiang University, Hangzhou 310058, China
| | - Nenggan Zheng
- Qiushi Academy for Advanced Studies,
Zhejiang University, Hangzhou 310027, China
- College of Computer Science and Technology,
Zhejiang University, Hangzhou 310027, China
- State Key Lab of Brain-Machine Intelligence,
Zhejiang University, Hangzhou 310058, China
- CCAI by MOE and Zhejiang Provincial Government (ZJU), Hangzhou 310027, China
| | - John A. Rogers
- Querrey Simpson Institute for Bioelectronics,
Northwestern University, Evanston, IL 60208, USA
- Department of Biomedical Engineering,
Northwestern University, Evanston, IL 60208, USA
- Department of Materials Science and Engineering,
Northwestern University, Evanston, IL 60208, USA
- Department of Mechanical Engineering,
Northwestern University, Evanston, IL 60208, USA
| | - Kewang Nan
- College of Pharmaceutical Sciences,
Zhejiang University, Hangzhou 310058, China
- National Key Laboratory of Advanced Drug Delivery and Release Systems,
Zhejiang University, Hangzhou 310058, China
- Jinhua Institute of Zhejiang University, Jinhua 321299, China
| |
Collapse
|
2
|
Yuan H, Yuan W, Duan S, Jiao K, Zhang Q, Lim EG, Chen M, Zhao C, Pan P, Liu X, Song P. Microfluidic-Assisted Caenorhabditis elegans Sorting: Current Status and Future Prospects. CYBORG AND BIONIC SYSTEMS 2023; 4:0011. [PMID: 37287459 PMCID: PMC10243201 DOI: 10.34133/cbsystems.0011] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Accepted: 01/15/2023] [Indexed: 07/30/2023] Open
Abstract
Caenorhabditis elegans (C. elegans) has been a popular model organism for several decades since its first discovery of the huge research potential for modeling human diseases and genetics. Sorting is an important means of providing stage- or age-synchronized worm populations for many worm-based bioassays. However, conventional manual techniques for C. elegans sorting are tedious and inefficient, and commercial complex object parametric analyzer and sorter is too expensive and bulky for most laboratories. Recently, the development of lab-on-a-chip (microfluidics) technology has greatly facilitated C. elegans studies where large numbers of synchronized worm populations are required and advances of new designs, mechanisms, and automation algorithms. Most previous reviews have focused on the development of microfluidic devices but lacked the summaries and discussion of the biological research demands of C. elegans, and are hard to read for worm researchers. We aim to comprehensively review the up-to-date microfluidic-assisted C. elegans sorting developments from several angles to suit different background researchers, i.e., biologists and engineers. First, we highlighted the microfluidic C. elegans sorting devices' advantages and limitations compared to the conventional commercialized worm sorting tools. Second, to benefit the engineers, we reviewed the current devices from the perspectives of active or passive sorting, sorting strategies, target populations, and sorting criteria. Third, to benefit the biologists, we reviewed the contributions of sorting to biological research. We expect, by providing this comprehensive review, that each researcher from this multidisciplinary community can effectively find the needed information and, in turn, facilitate future research.
Collapse
Affiliation(s)
- Hang Yuan
- School of Advanced Technology,
Xi'an Jiaotong - Liverpool University, Suzhou, China
| | - Wenwen Yuan
- School of Advanced Technology,
Xi'an Jiaotong - Liverpool University, Suzhou, China
- Department of Electrical and Electronic Engineering,
University of Liverpool, Liverpool, UK
| | - Sixuan Duan
- School of Advanced Technology,
Xi'an Jiaotong - Liverpool University, Suzhou, China
- Department of Electrical and Electronic Engineering,
University of Liverpool, Liverpool, UK
| | - Keran Jiao
- School of Advanced Technology,
Xi'an Jiaotong - Liverpool University, Suzhou, China
- Department of Chemistry,
Xi’an Jiaotong-Liverpool University, Suzhou, China
| | - Quan Zhang
- School of Advanced Technology,
Xi'an Jiaotong - Liverpool University, Suzhou, China
| | - Eng Gee Lim
- School of Advanced Technology,
Xi'an Jiaotong - Liverpool University, Suzhou, China
- Department of Electrical and Electronic Engineering,
University of Liverpool, Liverpool, UK
| | - Min Chen
- School of Advanced Technology,
Xi'an Jiaotong - Liverpool University, Suzhou, China
- Department of Electrical and Electronic Engineering,
University of Liverpool, Liverpool, UK
| | - Chun Zhao
- School of Advanced Technology,
Xi'an Jiaotong - Liverpool University, Suzhou, China
- Department of Electrical and Electronic Engineering,
University of Liverpool, Liverpool, UK
| | - Peng Pan
- Department of Mechanical & Industrial Engineering,
University of Toronto, Toronto, Canada
| | - Xinyu Liu
- Department of Mechanical & Industrial Engineering,
University of Toronto, Toronto, Canada
| | - Pengfei Song
- School of Advanced Technology,
Xi'an Jiaotong - Liverpool University, Suzhou, China
- Department of Electrical and Electronic Engineering,
University of Liverpool, Liverpool, UK
| |
Collapse
|
3
|
Annese VF, Hu C. Integrating Microfluidics and Electronics in Point-of-Care Diagnostics: Current and Future Challenges. MICROMACHINES 2022; 13:1923. [PMID: 36363944 PMCID: PMC9699090 DOI: 10.3390/mi13111923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/19/2022] [Revised: 11/01/2022] [Accepted: 11/03/2022] [Indexed: 06/16/2023]
Abstract
Point-of-Care (POC) diagnostics have gained increasing attention in recent years due to its numerous advantages over conventional diagnostic approaches. As proven during the recent COVID-19 pandemic, the rapidity and portability of POC testing improves the efficiency of healthcare services and reduces the burden on healthcare providers. There are hundreds of thousands of different applications for POC diagnostics, however, the ultimate requirement for the test is the same: sample-in and result-out. Many technologies have been implemented, such as microfluidics, semiconductors, and nanostructure, to achieve this end. The development of even more powerful POC systems was also enabled by merging multiple technologies into the same system. One successful example is the integration of microfluidics and electronics in POC diagnostics, which has simplified the sample handling process, reduced sample usage, and reduced the cost of the test. This review will analyze the current development of the POC diagnostic systems with the integration of microfluidics and electronics and discuss the future challenges and perspectives that researchers might have.
Collapse
Affiliation(s)
- Valerio Francesco Annese
- Center for Nano Science and Technology@PoliMi, Istituto Italiano di Tecnologia, 20133 Milan, Italy
- James Watt School of Engineering, University of Glasgow, Glasgow G12 8QQ, UK
| | - Chunxiao Hu
- James Watt School of Engineering, University of Glasgow, Glasgow G12 8QQ, UK
| |
Collapse
|
4
|
Hahnel SR, Roberts WM, Heisler I, Kulke D, Weeks JC. Comparison of electrophysiological and motility assays to study anthelmintic effects in Caenorhabditis elegans. INTERNATIONAL JOURNAL FOR PARASITOLOGY-DRUGS AND DRUG RESISTANCE 2021; 16:174-187. [PMID: 34252686 PMCID: PMC8350797 DOI: 10.1016/j.ijpddr.2021.05.005] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/09/2021] [Revised: 05/15/2021] [Accepted: 05/20/2021] [Indexed: 12/14/2022]
Abstract
Currently, only a few chemical drug classes are available to control the global burden of nematode infections in humans and animals. Most of these drugs exert their anthelmintic activity by interacting with proteins such as ion channels, and the nematode neuromuscular system remains a promising target for novel intervention strategies. Many commonly-used phenotypic readouts such as motility provide only indirect insight into neuromuscular function and the site(s) of action of chemical compounds. Electrophysiological recordings provide more specific information but are typically technically challenging and lack high throughput for drug discovery. Because drug discovery relies strongly on the evaluation and ranking of drug candidates, including closely related chemical derivatives, precise assays and assay combinations are needed for capturing and distinguishing subtle drug effects. Past studies show that nematode motility and pharyngeal pumping (feeding) are inhibited by most anthelmintic drugs. Here we compare two microfluidic devices (“chips”) that record electrophysiological signals from the nematode pharynx (electropharyngeograms; EPGs) ─ the ScreenChip™ and the 8-channel EPG platform ─ to evaluate their respective utility for anthelmintic research. We additionally compared EPG data with whole-worm motility measurements obtained with the wMicroTracker instrument. As references, we used three macrocyclic lactones (ivermectin, moxidectin, and milbemycin oxime), and levamisole, which act on different ion channels. Drug potencies (IC50 and IC95 values) from concentration-response curves, and the time-course of drug effects, were compared across platforms and across drugs. Drug effects on pump timing and EPG waveforms were also investigated. These experiments confirmed drug-class specific effects of the tested anthelmintics and illustrated the relative strengths and limitations of the different assays for anthelmintic research. Anthelmintic drugs inhibit pharyngeal pumping and motility in C. elegans. Two electrophysiological assays and one motility assay were compared. Macrocyclic lactones and levamisole have drug-class-specific effects. A combination of assays most fully reveals anthelmintic effects. Strengths and limitations of the three assays were identified.
Collapse
Affiliation(s)
| | | | | | | | - Janis C Weeks
- InVivo Biosystems Inc. (formerly NemaMetrix Inc.), Eugene, OR, USA.
| |
Collapse
|
5
|
Neuroscience Research using Small Animals on a Chip: From Nematodes to Zebrafish Larvae. BIOCHIP JOURNAL 2021. [DOI: 10.1007/s13206-021-00012-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
|
6
|
Abstract
In the last decade, microfluidic methods have proven to be powerful tools for Caenorhabditis elegans research, offering advanced manipulation of worms and precise control of experimental conditions. The advantages of microfluidic chips include their capability of immobilization, automated sorting, and longitudinal measurement, and more. In this review, we focus on control components that are widely used in the design of microfluidic devices, and discuss their functions and working principles that enable advanced manipulation on a chip. Understanding these components will ease the onboarding of researchers inexperienced with microfluidics and help them bring the power of microfluidics to new applications.
Collapse
Affiliation(s)
- Erel Levine
- Department of Bioengineering, Northeastern University, Boston, MA, USA
| | - Kyung Suk Lee
- Department of Physics Education, Kongju National University, Gongju, South Korea
| |
Collapse
|
7
|
Crisford A, Calahorro F, Ludlow E, Marvin JMC, Hibbard JK, Lilley CJ, Kearn J, Keefe F, Johnson P, Harmer R, Urwin PE, O’Connor V, Holden-Dye L. Identification and characterisation of serotonin signalling in the potato cyst nematode Globodera pallida reveals new targets for crop protection. PLoS Pathog 2020; 16:e1008884. [PMID: 33007049 PMCID: PMC7556481 DOI: 10.1371/journal.ppat.1008884] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2020] [Revised: 10/14/2020] [Accepted: 08/14/2020] [Indexed: 11/18/2022] Open
Abstract
Plant parasitic nematodes are microscopic pathogens that invade plant roots and cause extensive damage to crops. We have used a chemical biology approach to define mechanisms underpinning their parasitic behaviour: We discovered that reserpine, a plant alkaloid that inhibits the vesicular monoamine transporter (VMAT), potently impairs the ability of the potato cyst nematode Globodera pallida to enter the host plant root. We show this is due to an inhibition of serotonergic signalling that is essential for activation of the stylet which is used to access the host root. Prompted by this we identified core molecular components of G. pallida serotonin signalling encompassing the target of reserpine, VMAT; the synthetic enzyme for serotonin, tryptophan hydroxylase; the G protein coupled receptor SER-7 and the serotonin-gated chloride channel MOD-1. We cloned each of these molecular components and confirmed their functional identity by complementation of the corresponding C. elegans mutant thus mapping out serotonergic signalling in G. pallida. Complementary approaches testing the effect of chemical inhibitors of each of these signalling elements on discrete sub-behaviours required for parasitism and root invasion reinforce the critical role of serotonin. Thus, targeting the serotonin signalling pathway presents a promising new route to control plant parasitic nematodes.
Collapse
Affiliation(s)
- Anna Crisford
- School of Biological Sciences, University of Southampton, Southampton, United Kingdom
| | - Fernando Calahorro
- School of Biological Sciences, University of Southampton, Southampton, United Kingdom
| | - Elizabeth Ludlow
- School of Biological Sciences, University of Southampton, Southampton, United Kingdom
| | - Jessica M. C. Marvin
- Centre for Plant Sciences, School of Biology, Faculty of Biological Sciences, University of Leeds, Leeds, United Kingdom
| | - Jennifer K. Hibbard
- Centre for Plant Sciences, School of Biology, Faculty of Biological Sciences, University of Leeds, Leeds, United Kingdom
| | - Catherine J. Lilley
- Centre for Plant Sciences, School of Biology, Faculty of Biological Sciences, University of Leeds, Leeds, United Kingdom
| | - James Kearn
- School of Biological Sciences, University of Southampton, Southampton, United Kingdom
| | - Francesca Keefe
- School of Biological Sciences, University of Southampton, Southampton, United Kingdom
| | - Peter Johnson
- School of Biological Sciences, University of Southampton, Southampton, United Kingdom
| | - Rachael Harmer
- School of Biological Sciences, University of Southampton, Southampton, United Kingdom
| | - Peter E. Urwin
- Centre for Plant Sciences, School of Biology, Faculty of Biological Sciences, University of Leeds, Leeds, United Kingdom
| | - Vincent O’Connor
- School of Biological Sciences, University of Southampton, Southampton, United Kingdom
| | - Lindy Holden-Dye
- School of Biological Sciences, University of Southampton, Southampton, United Kingdom
| |
Collapse
|
8
|
Gonzales DL, Badhiwala KN, Avants BW, Robinson JT. Bioelectronics for Millimeter-Sized Model Organisms. iScience 2020; 23:100917. [PMID: 32114383 PMCID: PMC7049667 DOI: 10.1016/j.isci.2020.100917] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2019] [Revised: 01/29/2020] [Accepted: 02/10/2020] [Indexed: 01/27/2023] Open
Abstract
Advances in microfabrication technologies and biomaterials have enabled a growing class of electronic devices that can stimulate and record bioelectronic signals. Many of these devices have been developed for humans or vertebrate animals, where miniaturization allows for implantation within the body. There are, however, another class of bioelectronic interfaces that exploit microfabrication and nanoelectronics to record signals from tiny, millimeter-sized organisms. In these cases, rather than implanting a device inside an animal, animals themselves are loaded in large numbers into bioelectronic devices for neural circuit and behavioral interrogation. These scalable interfaces provide platforms to develop new therapeutics as well as better understand basic principles of bioelectronic communication, neuroscience, and behavior. Here we review recent progress in these bioelectronic technologies and describe how they can complement on-chip optical, mechanical, and chemical interrogation methods to achieve high-throughput, multimodal studies of millimeter-sized small animals.
Collapse
Affiliation(s)
- Daniel L Gonzales
- Weldon School of Biomedical Engineering, Purdue University, 206 S. Martin Jischke Dr., West Lafayette, IN 47907, USA
| | - Krishna N Badhiwala
- Department of Bioengineering, Rice University, 6100 Main St., Houston, TX 77005, USA
| | - Benjamin W Avants
- Department of Electrical and Computer Engineering, Rice University, 6100 Main St., Houston, TX 77005, USA
| | - Jacob T Robinson
- Department of Bioengineering, Rice University, 6100 Main St., Houston, TX 77005, USA; Department of Electrical and Computer Engineering, Rice University, 6100 Main St., Houston, TX 77005, USA; Applied Physics Program, Rice University, 6100 Main St., Houston, TX 77005, USA; Department of Neuroscience, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.
| |
Collapse
|
9
|
Midkiff D, San-Miguel A. Microfluidic Technologies for High Throughput Screening Through Sorting and On-Chip Culture of C. elegans. Molecules 2019; 24:molecules24234292. [PMID: 31775328 PMCID: PMC6930626 DOI: 10.3390/molecules24234292] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2019] [Revised: 11/20/2019] [Accepted: 11/22/2019] [Indexed: 02/07/2023] Open
Abstract
The nematode Caenorhabditis elegans is a powerful model organism that has been widely used to study molecular biology, cell development, neurobiology, and aging. Despite their use for the past several decades, the conventional techniques for growth, imaging, and behavioral analysis of C. elegans can be cumbersome, and acquiring large data sets in a high-throughput manner can be challenging. Developments in microfluidic “lab-on-a-chip” technologies have improved studies of C. elegans by increasing experimental control and throughput. Microfluidic features such as on-chip control layers, immobilization channels, and chamber arrays have been incorporated to develop increasingly complex platforms that make experimental techniques more powerful. Genetic and chemical screens are performed on C. elegans to determine gene function and phenotypic outcomes of perturbations, to test the effect that chemicals have on health and behavior, and to find drug candidates. In this review, we will discuss microfluidic technologies that have been used to increase the throughput of genetic and chemical screens in C. elegans. We will discuss screens for neurobiology, aging, development, behavior, and many other biological processes. We will also discuss robotic technologies that assist in microfluidic screens, as well as alternate platforms that perform functions similar to microfluidics.
Collapse
|
10
|
Calahorro F, Keefe F, Dillon J, Holden-Dye L, O'Connor V. Neuroligin tuning of pharyngeal pumping reveals extrapharyngeal modulation of feeding in Caenorhabditis elegans. ACTA ACUST UNITED AC 2019; 222:jeb.189423. [PMID: 30559302 DOI: 10.1242/jeb.189423] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2018] [Accepted: 12/07/2018] [Indexed: 01/16/2023]
Abstract
The integration of distinct sensory modalities is essential for behavioural decision making. In C aenorhabditis elegans, this process is coordinated by neural circuits that integrate sensory cues from the environment to generate an appropriate behaviour at the appropriate output muscles. Food is a multimodal cue that impacts the microcircuits to modulate feeding and foraging drivers at the level of the pharyngeal and body wall muscle, respectively. When food triggers an upregulation in pharyngeal pumping, it allows the effective ingestion of food. Here, we show that a C elegans mutant in the single gene orthologous to human neuroligins, nlg-1, is defective in food-induced pumping. This was not due to an inability to sense food, as nlg-1 mutants were not defective in chemotaxis towards bacteria. In addition, we found that neuroligin is widely expressed in the nervous system, including AIY, ADE, ALA, URX and HSN neurons. Interestingly, despite the deficit in pharyngeal pumping, neuroligin was not expressed within the pharyngeal neuromuscular network, which suggests an extrapharyngeal regulation of this circuit. We resolved electrophysiologically the neuroligin contribution to the pharyngeal circuit by mimicking food-dependent pumping and found that the nlg-1 phenotype is similar to mutants impaired in GABAergic and/or glutamatergic signalling. We suggest that neuroligin organizes extrapharyngeal circuits that regulate the pharynx. These observations based on the molecular and cellular determinants of feeding are consistent with the emerging role of neuroligin in discretely impacting functional circuits underpinning complex behaviours.
Collapse
Affiliation(s)
- Fernando Calahorro
- Biological Sciences, Building 85, University of Southampton, Southampton SO17 1BJ, UK
| | - Francesca Keefe
- Biological Sciences, Building 85, University of Southampton, Southampton SO17 1BJ, UK
| | - James Dillon
- Biological Sciences, Building 85, University of Southampton, Southampton SO17 1BJ, UK
| | - Lindy Holden-Dye
- Biological Sciences, Building 85, University of Southampton, Southampton SO17 1BJ, UK
| | - Vincent O'Connor
- Biological Sciences, Building 85, University of Southampton, Southampton SO17 1BJ, UK
| |
Collapse
|
11
|
Chawla K, Modena MM, Ravaynia PS, Lombardo FC, Leonhardt M, Panic G, Bürgel SC, Keiser J, Hierlemann A. Impedance-Based Microfluidic Assay for Automated Antischistosomal Drug Screening. ACS Sens 2018; 3:2613-2620. [PMID: 30426744 PMCID: PMC6396876 DOI: 10.1021/acssensors.8b01027] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Schistosomiasis is a neglected tropical disease, caused by parasitic worms, which affects almost 200 million people worldwide. For over 40 years, chemotherapeutic treatment has relied on the administration of praziquantel, an efficacious drug against schistosomiasis. However, concerns about developing drug resistance require the discovery of novel drug compounds. Currently, the drug-screening process is mostly based on the visual evaluation of drug effects on worm larvae in vitro by a trained operator. This manual process is extremely labor-intensive, has limited throughput, and may be affected by subjectivity of the operator evaluation. In this paper, we introduce a microfluidic platform with integrated electrodes for the automated detection of worm larvae viability using an impedance-based approach. The microfluidic analysis unit consists of two sets of electrodes and a channel of variable geometry to enable counting and size detection of single parasite larvae and the collective evaluation of the motility of the larvae as an unbiased estimator for their viability. The current platform also allows for multiplexing of the analysis units resulting in increased throughput. We used our platform to record size and motility variations of Schistosoma mansoni larvae exposed to different concentrations of mefloquine, a drug with established in vitro antischistosomal properties. The developed platform demonstrates the potential of integrated microfluidic platforms for high-throughput antischistosomal drug screening.
Collapse
Affiliation(s)
- Ketki Chawla
- ETH Zurich, Dept. of Biosystems Science and Engineering, Bio Engineering Laboratory, Basel, Switzerland
| | - Mario M. Modena
- ETH Zurich, Dept. of Biosystems Science and Engineering, Bio Engineering Laboratory, Basel, Switzerland
| | - Paolo S. Ravaynia
- ETH Zurich, Dept. of Biosystems Science and Engineering, Bio Engineering Laboratory, Basel, Switzerland
| | - Flavio C. Lombardo
- Swiss Tropical and Public Health Institute, Department of Medical Parasitology and Infection Biology, Basel, Switzerland
- University of Basel, Basel, Switzerland
| | - Martin Leonhardt
- ETH Zurich, Dept. of Biosystems Science and Engineering, Bio Engineering Laboratory, Basel, Switzerland
| | - Gordana Panic
- Swiss Tropical and Public Health Institute, Department of Medical Parasitology and Infection Biology, Basel, Switzerland
- University of Basel, Basel, Switzerland
| | - Sebastian C. Bürgel
- ETH Zurich, Dept. of Biosystems Science and Engineering, Bio Engineering Laboratory, Basel, Switzerland
| | - Jennifer Keiser
- Swiss Tropical and Public Health Institute, Department of Medical Parasitology and Infection Biology, Basel, Switzerland
- University of Basel, Basel, Switzerland
| | - Andreas Hierlemann
- ETH Zurich, Dept. of Biosystems Science and Engineering, Bio Engineering Laboratory, Basel, Switzerland
| |
Collapse
|
12
|
Weeks JC, Robinson KJ, Lockery SR, Roberts WM. Anthelmintic drug actions in resistant and susceptible C. elegans revealed by electrophysiological recordings in a multichannel microfluidic device. Int J Parasitol Drugs Drug Resist 2018; 8:607-628. [PMID: 30503202 PMCID: PMC6287544 DOI: 10.1016/j.ijpddr.2018.10.003] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2018] [Revised: 10/17/2018] [Accepted: 10/18/2018] [Indexed: 12/22/2022]
Abstract
Many anthelmintic drugs used to treat parasitic nematode infections target proteins that regulate electrical activity of neurons and muscles: ion channels (ICs) and neurotransmitter receptors (NTRs). Perturbation of IC/NTR function disrupts worm behavior and can lead to paralysis, starvation, immune attack and expulsion. Limitations of current anthelmintics include a limited spectrum of activity across species and the threat of drug resistance, highlighting the need for new drugs for human and veterinary medicine. Although ICs/NTRs are valuable anthelmintic targets, electrophysiological recordings are not commonly included in drug development pipelines. We designed a medium-throughput platform for recording electropharyngeograms (EPGs)-the electrical signals emitted by muscles and neurons of the pharynx during pharyngeal pumping (feeding)-in Caenorhabditis elegans and parasitic nematodes. The current study in C. elegans expands previous work in several ways. Detecting anthelmintic bioactivity in drugs, compounds or natural products requires robust, sustained pharyngeal pumping under baseline conditions. We generated concentration-response curves for stimulating pumping by perfusing 8-channel microfluidic devices (chips) with the neuromodulator serotonin, or with E. coli bacteria (C. elegans' food in the laboratory). Worm orientation in the chip (head-first vs. tail-first) affected the response to E. coli but not to serotonin. Using a panel of anthelmintics-ivermectin, levamisole and piperazine-targeting different ICs/NTRs, we determined the effects of concentration and treatment duration on EPG activity, and successfully distinguished control (N2) and drug-resistant worms (avr-14; avr-15; glc-1, unc-38 and unc-49). EPG recordings detected anthelmintic activity of drugs that target ICs/NTRs located in the pharynx as well as at extra-pharyngeal sites. A bus-8 mutant with enhanced permeability was more sensitive than controls to drug treatment. These results provide a useful framework for investigators who would like to more easily incorporate electrophysiology as a routine component of their anthelmintic research workflow.
Collapse
Affiliation(s)
- Janis C Weeks
- Institute of Neuroscience, University of Oregon, 1254 University of Oregon, Eugene, OR, 97403-1254, USA.
| | - Kristin J Robinson
- Institute of Neuroscience, University of Oregon, 1254 University of Oregon, Eugene, OR, 97403-1254, USA.
| | - Shawn R Lockery
- Institute of Neuroscience, University of Oregon, 1254 University of Oregon, Eugene, OR, 97403-1254, USA.
| | - William M Roberts
- Institute of Neuroscience, University of Oregon, 1254 University of Oregon, Eugene, OR, 97403-1254, USA.
| |
Collapse
|
13
|
Badhiwala KN, Gonzales DL, Vercosa DG, Avants BW, Robinson JT. Microfluidics for electrophysiology, imaging, and behavioral analysis of Hydra. LAB ON A CHIP 2018; 18:2523-2539. [PMID: 29987278 DOI: 10.1039/c8lc00475g] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
The nervous system of the cnidarian Hydra vulgaris exhibits remarkable regenerative abilities. When cut in two, the bisected tissue reorganizes into fully behaving animals in approximately 48 hours. Furthermore, new animals can reform from aggregates of dissociated cells. Understanding how behaviors are coordinated by this highly plastic nervous system could reveal basic principles of neural circuit dynamics underlying behaviors. However, Hydra's deformable and contractile body makes it difficult to manipulate the local environment while recording neural activity. Here, we present the first microfluidic technologies capable of simultaneous electrical, chemical, and optical interrogation of these soft, deformable organisms. Specifically, we demonstrate devices that can immobilize Hydra for hours-long simultaneous electrical and optical recording, and chemical stimulation of behaviors revealing neural activity during muscle contraction. We further demonstrate quantitative locomotive and behavioral tracking made possible by confining the animal to quasi-two-dimensional micro-arenas. Together, these proof-of-concept devices show that microfluidics provide a platform for scalable, quantitative cnidarian neurobiology. The experiments enabled by this technology may help reveal how highly plastic networks of neurons provide robust control of animal behavior.
Collapse
Affiliation(s)
- Krishna N Badhiwala
- Department of Bioengineering, Rice University, 6100 Main Street, Houston, Texas 77005, USA.
| | | | | | | | | |
Collapse
|
14
|
Modena MM, Chawla K, Misun PM, Hierlemann A. Smart Cell Culture Systems: Integration of Sensors and Actuators into Microphysiological Systems. ACS Chem Biol 2018; 13:1767-1784. [PMID: 29381325 PMCID: PMC5959007 DOI: 10.1021/acschembio.7b01029] [Citation(s) in RCA: 44] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Technological advances in microfabrication techniques in combination with organotypic cell and tissue models have enabled the realization of microphysiological systems capable of recapitulating aspects of human physiology in vitro with great fidelity. Concurrently, a number of analysis techniques has been developed to probe and characterize these model systems. However, many assays are still performed off-line, which severely compromises the possibility of obtaining real-time information from the samples under examination, and which also limits the use of these platforms in high-throughput analysis. In this review, we focus on sensing and actuation schemes that have already been established or offer great potential to provide in situ detection or manipulation of relevant cell or tissue samples in microphysiological platforms. We will first describe methods that can be integrated in a straightforward way and that offer potential multiplexing and/or parallelization of sensing and actuation functions. These methods include electrical impedance spectroscopy, electrochemical biosensors, and the use of surface acoustic waves for manipulation and analysis of cells, tissue, and multicellular organisms. In the second part, we will describe two sensor approaches based on surface-plasmon resonance and mechanical resonators that have recently provided new characterization features for biological samples, although technological limitations for use in high-throughput applications still exist.
Collapse
Affiliation(s)
- Mario M. Modena
- ETH Zürich, Department of Biosystems Science and Engineering,
Bio Engineering Laboratory, Basel, Switzerland
| | - Ketki Chawla
- ETH Zürich, Department of Biosystems Science and Engineering,
Bio Engineering Laboratory, Basel, Switzerland
| | - Patrick M. Misun
- ETH Zürich, Department of Biosystems Science and Engineering,
Bio Engineering Laboratory, Basel, Switzerland
| | - Andreas Hierlemann
- ETH Zürich, Department of Biosystems Science and Engineering,
Bio Engineering Laboratory, Basel, Switzerland
| |
Collapse
|
15
|
Kamili F, Lu H. Recent Advances and Trends in Microfluidic Platforms for C. elegans Biological Assays. ANNUAL REVIEW OF ANALYTICAL CHEMISTRY (PALO ALTO, CALIF.) 2018; 11:245-264. [PMID: 29894230 DOI: 10.1146/annurev-anchem-061417-125604] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Microfluidics has proven to be a key tool in quantitative biological research. The C. elegans research community in particular has developed a variety of microfluidic platforms to investigate sensory systems, development, aging, and physiology of the nematode. Critical for the growth of this field, however, has been the implementation of concurrent advanced microscopy, hardware, and software technologies that enable the discovery of novel biology. In this review, we highlight recent innovations in microfluidic platforms used for assaying C. elegans and discuss the novel technological approaches and analytic strategies required for these systems. We conclude that platforms that provide analytical frameworks for assaying specific biological mechanisms and those that take full advantage of integrated technologies to extract high-value quantitative information from worm assays are most likely to move the field forward.
Collapse
Affiliation(s)
- Farhan Kamili
- Interdisciplinary Program in Bioengineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
| | - Hang Lu
- Interdisciplinary Program in Bioengineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
- School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA;
| |
Collapse
|
16
|
Cornaglia M, Lehnert T, Gijs MAM. Microfluidic systems for high-throughput and high-content screening using the nematode Caenorhabditis elegans. LAB ON A CHIP 2017; 17:3736-3759. [PMID: 28840220 DOI: 10.1039/c7lc00509a] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
In a typical high-throughput drug screening (HTS) process, up to millions of chemical compounds are applied to cells cultured in well plates, aiming to find molecules that exhibit a robust dose-response, as evidenced for example by a fluorescence signal. In high-content screening (HCS), one goes a step further by linking the tested compounds to phenotypic information, obtained, for instance, from microscopic cell images, thereby creating richer data sets that also require more advanced analysis methods. The nematode Caenorhabditis elegans came into the screening picture due to the wide availability of its mutants and human disease models, its relatively easy culture and short life cycle. Being a whole-organism model, it allows drug testing under physiological conditions at multi-tissue levels and provides additional observable phenotypes with respect to cell models, related, for instance, to development, aging, behavior or motility. Worm-based HTS studies in liquid environments on microwell plates have been demonstrated, while microfluidic devices allowed surpassing the performance of plates by enabling more versatile and accurate assays, precise and dynamic dosing of compounds, and readouts down to single-animal resolution. In this review, we discuss microfluidic devices for C. elegans analysis and related studies, published in the period from 2012 to 2017. After an introduction to the different screening approaches, we first focus on microfluidic systems with potential for screening applications. Various enabling technologies, e.g. electrophysiological on-chip recordings or laser axotomy, have been implemented, as well as techniques for reversible worm immobilization and high-resolution imaging, combined with algorithms for automated experimentation and analysis. Several devices for developmental or behavioral assays, and worm sorting based on different phenotypes, have been proposed too. In a subsequent section, we review the application of microfluidic-based systems for medium- and high-throughput screens, including neurobiology and neurodegeneration studies, aging and developmental assays, toxicity and pathogenesis screens, as well as behavioral and motility assays. A thorough analysis of this work reveals a trend towards microfluidic systems more and more capable of offering high-quality analyses of large worm populations, based on multi-phenotypic and/or longitudinal readouts, with clear potential for their application in larger HTS/HCS contexts.
Collapse
Affiliation(s)
- Matteo Cornaglia
- Laboratory of Microsystems, École Polytechnique Fédérale de Lausanne, Lausanne, CH-1015, Switzerland.
| | | | | |
Collapse
|
17
|
Crawford SE, Hartung T, Hollert H, Mathes B, van Ravenzwaay B, Steger-Hartmann T, Studer C, Krug HF. Green Toxicology: a strategy for sustainable chemical and material development. ENVIRONMENTAL SCIENCES EUROPE 2017; 29:16. [PMID: 28435767 PMCID: PMC5380705 DOI: 10.1186/s12302-017-0115-z] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2017] [Accepted: 03/24/2017] [Indexed: 05/04/2023]
Abstract
Green Toxicology refers to the application of predictive toxicology in the sustainable development and production of new less harmful materials and chemicals, subsequently reducing waste and exposure. Built upon the foundation of "Green Chemistry" and "Green Engineering", "Green Toxicology" aims to shape future manufacturing processes and safe synthesis of chemicals in terms of environmental and human health impacts. Being an integral part of Green Chemistry, the principles of Green Toxicology amplify the role of health-related aspects for the benefit of consumers and the environment, in addition to being economical for manufacturing companies. Due to the costly development and preparation of new materials and chemicals for market entry, it is no longer practical to ignore the safety and environmental status of new products during product development stages. However, this is only possible if toxicologists and chemists work together early on in the development of materials and chemicals to utilize safe design strategies and innovative in vitro and in silico tools. This paper discusses some of the most relevant aspects, advances and limitations of the emergence of Green Toxicology from the perspective of different industry and research groups. The integration of new testing methods and strategies in product development, testing and regulation stages are presented with examples of the application of in silico, omics and in vitro methods. Other tools for Green Toxicology, including the reduction of animal testing, alternative test methods, and read-across approaches are also discussed.
Collapse
Affiliation(s)
- Sarah E. Crawford
- Institute for Environmental Research, RWTH Aachen University, Worringerweg 1, 52074 Aachen, Germany
| | - Thomas Hartung
- John Hopkins University, Bloomberg School of Public Health, 615 N. Wolfe Street, Baltimore, MD 21205 USA
- CAAT-Europe, University of Konstanz, Universitaetsstrasse 10, 78467 Constance, Germany
| | - Henner Hollert
- Institute for Environmental Research, RWTH Aachen University, Worringerweg 1, 52074 Aachen, Germany
| | - Björn Mathes
- DECHEMA e.V., Theodor-Heuss-Allee 25, 60486 Frankfurt, Germany
| | | | | | - Christoph Studer
- Federal Office of Public Health, Schwarzenburgstraße 157, 3003 Bern, Switzerland
| | - Harald F. Krug
- Empa, Materials Science and Technology, Lerchenfeld-straße 5, 9014 St. Gallen, Switzerland
| |
Collapse
|
18
|
Kinser HE, Pincus Z. High-throughput screening in the C. elegans nervous system. Mol Cell Neurosci 2017; 80:192-197. [PMID: 27265309 PMCID: PMC5136351 DOI: 10.1016/j.mcn.2016.06.001] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2016] [Revised: 05/24/2016] [Accepted: 06/01/2016] [Indexed: 11/23/2022] Open
Abstract
The nematode Caenorhabditis elegans is widely used as a model organism in the field of neurobiology. The wiring of the C. elegans nervous system has been entirely mapped, and the animal's optical transparency allows for in vivo observation of neuronal activity. The nematode is also small in size, self-fertilizing, and inexpensive to cultivate and maintain, greatly lending to its utility as a whole-animal model for high-throughput screening (HTS) in the nervous system. However, the use of this organism in large-scale screens presents unique technical challenges, including reversible immobilization of the animal, parallel single-animal culture and containment, automation of laser surgery, and high-throughput image acquisition and phenotyping. These obstacles require significant modification of existing techniques and the creation of new C. elegans-based HTS platforms. In this review, we outline these challenges in detail and survey the novel technologies and methods that have been developed to address them.
Collapse
Affiliation(s)
- Holly E Kinser
- Department of Biomedical Engineering, Washington University in St. Louis, United States
| | - Zachary Pincus
- Department of Developmental Biology, Department of Genetics, Washington University, St. Louis, United States
| |
Collapse
|
19
|
Ardeshiri R, Mulcahy B, Zhen M, Rezai P. A hybrid microfluidic device for on-demand orientation and multidirectional imaging of C. elegans organs and neurons. BIOMICROFLUIDICS 2016; 10:064111. [PMID: 27990213 PMCID: PMC5135714 DOI: 10.1063/1.4971157] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2016] [Accepted: 11/16/2016] [Indexed: 05/06/2023]
Abstract
C. elegans is a well-known model organism in biology and neuroscience with a simple cellular (959 cells) and nervous (302 neurons) system and a relatively homologous (40%) genome to humans. Lateral and longitudinal manipulation of C. elegans to a favorable orientation is important in many applications such as neural and cellular imaging, laser ablation, microinjection, and electrophysiology. In this paper, we describe a micro-electro-fluidic device for on-demand manipulation of C. elegans and demonstrate its application in imaging of organs and neurons that cannot be visualized efficiently under natural orientation. To achieve this, we have used the electrotaxis technique to longitudinally orient the worm in a microchannel and then insert it into an orientation and imaging channel in which we integrated a rotatable glass capillary for orientation of the worm in any desired direction. The success rates of longitudinal and lateral orientations were 76% and 100%, respectively. We have demonstrated the application of our device in optical and fluorescent imaging of vulva, uterine-vulval cell (uv1), vulB1\2 (adult vulval toroid cells), and ventral nerve cord of wild-type and mutant worms. In comparison to existing methods, the developed technique is capable of orienting the worm at any desired angle and maintaining the orientation while providing access to the worm for potential post-manipulation assays. This versatile tool can be potentially used in various applications such as neurobehavioral imaging, neuronal ablation, microinjection, and electrophysiology.
Collapse
Affiliation(s)
- Ramtin Ardeshiri
- Department of Mechanical Engineering, York University , Toronto, Ontario M3J 1P3, Canada
| | - Ben Mulcahy
- Lunenfeld-Tanenbaum Research Institute , Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada
| | | | - Pouya Rezai
- Department of Mechanical Engineering, York University , Toronto, Ontario M3J 1P3, Canada
| |
Collapse
|
20
|
Lucanic M, Garrett T, Yu I, Calahorro F, Asadi Shahmirzadi A, Miller A, Gill MS, Hughes RE, Holden‐Dye L, Lithgow GJ. Chemical activation of a food deprivation signal extends lifespan. Aging Cell 2016; 15:832-41. [PMID: 27220516 PMCID: PMC5013014 DOI: 10.1111/acel.12492] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/22/2016] [Indexed: 12/29/2022] Open
Abstract
Model organisms subject to dietary restriction (DR) generally live longer. Accompanying this lifespan extension are improvements in overall health, based on multiple metrics. This indicates that pharmacological treatments that mimic the effects of DR could improve health in humans. To find new chemical structures that extend lifespan, we screened 30 000 synthetic, diverse drug‐like chemicals in Caenorhabditis elegans and identified several structurally related compounds that acted through DR mechanisms. The most potent of these NP1 impinges upon a food perception pathway by promoting glutamate signaling in the pharynx. This results in the overriding of a GPCR pathway involved in the perception of food and which normally acts to decrease glutamate signals. Our results describe the activation of a dietary restriction response through the pharmacological masking of a novel sensory pathway that signals the presence of food. This suggests that primary sensory pathways may represent novel targets for human pharmacology.
Collapse
Affiliation(s)
- Mark Lucanic
- Buck Institute for Research on Aging 8001 Redwood Boulevard Novato CA USA
| | - Theo Garrett
- Buck Institute for Research on Aging 8001 Redwood Boulevard Novato CA USA
| | - Ivan Yu
- Buck Institute for Research on Aging 8001 Redwood Boulevard Novato CA USA
- Dominican University of California 50 Acacia Avenue San Rafael CA USA
| | - Fernando Calahorro
- Center for Biological Sciences Institute for Life Sciences University of Southampton Southampton UK
| | - Azar Asadi Shahmirzadi
- Buck Institute for Research on Aging 8001 Redwood Boulevard Novato CA USA
- Davis School of Gerontology University of Southern California Los Angeles CA USA
| | - Aaron Miller
- Buck Institute for Research on Aging 8001 Redwood Boulevard Novato CA USA
| | - Matthew S. Gill
- Department of Metabolism & Aging The Scripps Research Institute‐Scripps Florida 130 Scripps Way Jupiter FL 33458
| | - Robert E. Hughes
- Buck Institute for Research on Aging 8001 Redwood Boulevard Novato CA USA
| | - Lindy Holden‐Dye
- Center for Biological Sciences Institute for Life Sciences University of Southampton Southampton UK
| | - Gordon J. Lithgow
- Buck Institute for Research on Aging 8001 Redwood Boulevard Novato CA USA
| |
Collapse
|
21
|
Weeks JC, Roberts WM, Robinson KJ, Keaney M, Vermeire JJ, Urban JF, Lockery SR, Hawdon JM. Microfluidic platform for electrophysiological recordings from host-stage hookworm and Ascaris suum larvae: A new tool for anthelmintic research. INTERNATIONAL JOURNAL FOR PARASITOLOGY-DRUGS AND DRUG RESISTANCE 2016; 6:314-328. [PMID: 27751868 PMCID: PMC5196495 DOI: 10.1016/j.ijpddr.2016.08.001] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/24/2016] [Revised: 08/17/2016] [Accepted: 08/17/2016] [Indexed: 12/27/2022]
Abstract
The screening of candidate compounds and natural products for anthelmintic activity is important for discovering new drugs against human and animal parasites. We previously validated in Caenorhabditis elegans a microfluidic device (‘chip’) that records non-invasively the tiny electrophysiological signals generated by rhythmic contraction (pumping) of the worm's pharynx. These electropharyngeograms (EPGs) are recorded simultaneously from multiple worms per chip, providing a medium-throughput readout of muscular and neural activity that is especially useful for compounds targeting neurotransmitter receptors and ion channels. Microfluidic technologies have transformed C. elegans research and the goal of the current study was to validate hookworm and Ascaris suum host-stage larvae in the microfluidic EPG platform. Ancylostoma ceylanicum and A. caninum infective L3s (iL3s) that had been activated in vitro generally produced erratic EPG activity under the conditions tested. In contrast, A. ceylanicum L4s recovered from hamsters exhibited robust, sustained EPG activity, consisting of three waveforms: (1) conventional pumps as seen in other nematodes; (2) rapid voltage deflections, associated with irregular contractions of the esophagus and openings of the esophogeal-intestinal valve (termed a ‘flutter’); and (3) hybrid waveforms, which we classified as pumps. For data analysis, pumps and flutters were combined and termed EPG ‘events.’ EPG waveform identification and analysis were performed semi-automatically using custom-designed software. The neuromodulator serotonin (5-hydroxytryptamine; 5HT) increased EPG event frequency in A. ceylanicum L4s at an optimal concentration of 0.5 mM. The anthelmintic drug ivermectin (IVM) inhibited EPG activity in a concentration-dependent manner. EPGs from A. suum L3s recovered from pig lungs exhibited robust pharyngeal pumping in 1 mM 5HT, which was inhibited by IVM. These experiments validate the use of A. ceylanicum L4s and A. suum L3s with the microfluidic EPG platform, providing a new tool for screening anthelmintic candidates or investigating parasitic nematode feeding behavior. Pharyngeal pumping in nematodes generates an electropharyngeogram (EPG). The EPG provides a readout of the electrical activity of neurons and muscles. A microfluidic platform for recording EPGs was validated in parasitic nematodes. EPG activity and drug responses were characterized in host-stage larvae. Microfluidic EPG recordings provide a powerful new tool for anthelmintic research.
Collapse
Affiliation(s)
- Janis C Weeks
- Institute of Neuroscience and African Studies Program, University of Oregon, 1254 University of Oregon, Eugene, OR 97403-1254, USA.
| | - William M Roberts
- Institute of Neuroscience, University of Oregon, 1254 University of Oregon, Eugene, OR 97403-1254, USA.
| | - Kristin J Robinson
- Institute of Neuroscience, University of Oregon, 1254 University of Oregon, Eugene, OR 97403-1254, USA.
| | - Melissa Keaney
- Department of Microbiology, Immunology, and Tropical Medicine, School of Medicine and Health Sciences, The George Washington University, Washington, DC 20037, USA.
| | - Jon J Vermeire
- Center for Discovery and Innovation in Parasitic Diseases, Dept. of Pathology and Laboratory Medicine, UC, San Francisco, USA.
| | - Joseph F Urban
- US Department of Agriculture, Agricultural Research Service, Beltsville Human Nutrition Research Center, Diet, Genomic and Immunology Laboratory, Beltsville, MD, USA.
| | - Shawn R Lockery
- Institute of Neuroscience, University of Oregon, 1254 University of Oregon, Eugene, OR 97403-1254, USA.
| | - John M Hawdon
- Department of Microbiology, Immunology, and Tropical Medicine, School of Medicine and Health Sciences, The George Washington University, Washington, DC 20037, USA.
| |
Collapse
|
22
|
Muthaiyan Shanmugam M, Subhra Santra T. Microfluidic Devices in Advanced Caenorhabditis elegans Research. Molecules 2016; 21:molecules21081006. [PMID: 27490525 PMCID: PMC6273278 DOI: 10.3390/molecules21081006] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2016] [Revised: 07/19/2016] [Accepted: 07/27/2016] [Indexed: 01/10/2023] Open
Abstract
The study of model organisms is very important in view of their potential for application to human therapeutic uses. One such model organism is the nematode worm, Caenorhabditis elegans. As a nematode, C. elegans have ~65% similarity with human disease genes and, therefore, studies on C. elegans can be translated to human, as well as, C. elegans can be used in the study of different types of parasitic worms that infect other living organisms. In the past decade, many efforts have been undertaken to establish interdisciplinary research collaborations between biologists, physicists and engineers in order to develop microfluidic devices to study the biology of C. elegans. Microfluidic devices with the power to manipulate and detect bio-samples, regents or biomolecules in micro-scale environments can well fulfill the requirement to handle worms under proper laboratory conditions, thereby significantly increasing research productivity and knowledge. The recent development of different kinds of microfluidic devices with ultra-high throughput platforms has enabled researchers to carry out worm population studies. Microfluidic devices primarily comprises of chambers, channels and valves, wherein worms can be cultured, immobilized, imaged, etc. Microfluidic devices have been adapted to study various worm behaviors, including that deepen our understanding of neuromuscular connectivity and functions. This review will provide a clear account of the vital involvement of microfluidic devices in worm biology.
Collapse
Affiliation(s)
- Muniesh Muthaiyan Shanmugam
- Institute of Molecular and Cellular Biology, Department of Life Science, National Tsing Hua University, Hsinchu 30013, Taiwan.
| | - Tuhin Subhra Santra
- Department of Engineering Design, Indian Institute of Technology Madras, Chennai 600 036, India.
| |
Collapse
|
23
|
Scholz M, Lynch DJ, Lee KS, Levine E, Biron D. A scalable method for automatically measuring pharyngeal pumping in C. elegans. J Neurosci Methods 2016; 274:172-178. [PMID: 27474347 DOI: 10.1016/j.jneumeth.2016.07.016] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2016] [Revised: 07/21/2016] [Accepted: 07/22/2016] [Indexed: 11/20/2022]
Abstract
BACKGROUND The nematode Caenorhabditis elegans is widely used for studying small neural circuits underlying behavior. In particular, the rhythmic feeding motions collectively termed pharyngeal pumping are regulated by a nearly autonomous network of 20 neurons of 14 types. Despite much progress achieved through laser ablation, genetics, electrophysiology, and optogenetics, key questions regarding the regulation of pumping remain open. NEW METHOD We describe the implementation and application of a scalable automated method for measuring pumping in controlled environments. Our implementation is affordable and flexible: key hardware and software elements can be modified to accommodate different requirements. RESULTS We demonstrate prolonged measurements under controlled conditions and the resulting high quality data. We show the scalability of our method, enabling high throughput, and its suitability for maintaining static and dynamic conditions. When food availability was oscillated, pumping rates were low as compared to steady conditions and pumping activity was not reliably modulated in response to changes in food concentration. COMPARISON WITH EXISTING METHOD The prevailing method for measuring rates of pumping relies on scoring by visual inspection of short recordings. Our automated method compares well with manual scoring. It enables detailed statistical characterization under experimental conditions not previously accessible and minimizes unintentional bias. CONCLUSIONS Our approach adds a powerful tool for studying pharyngeal pumping. It enhances the experimental versatility of assaying genetic and pharmacological manipulations and the ability to characterize the resulting behavior. Both the experimental setup and the analysis can be readily adapted to additional challenging motion detection problems.
Collapse
Affiliation(s)
- Monika Scholz
- James Franck Institute, The University of Chicago, Chicago, IL 60637, USA; Institute for Biophysical Dynamics, The University of Chicago, Chicago, IL 60637, USA
| | - Dylan J Lynch
- Department of Chemical Engineering, University of Illinois at Chicago, Chicago, IL 60607, USA
| | - Kyung Suk Lee
- Department of Physics and Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA
| | - Erel Levine
- Department of Physics and Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA
| | - David Biron
- James Franck Institute, The University of Chicago, Chicago, IL 60637, USA; Institute for Biophysical Dynamics, The University of Chicago, Chicago, IL 60637, USA; Department of Physics, The University of Chicago, Chicago, IL 60637, USA.
| |
Collapse
|
24
|
Gupta BP, Rezai P. Microfluidic Approaches for Manipulating, Imaging, and Screening C. elegans. MICROMACHINES 2016; 7:E123. [PMID: 30404296 PMCID: PMC6190076 DOI: 10.3390/mi7070123] [Citation(s) in RCA: 51] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/19/2016] [Revised: 06/23/2016] [Accepted: 07/11/2016] [Indexed: 11/17/2022]
Abstract
The nematode C. elegans (worm) is a small invertebrate animal widely used in studies related to fundamental biological processes, disease modelling, and drug discovery. Due to their small size and transparent body, these worms are highly suitable for experimental manipulations. In recent years several microfluidic devices and platforms have been developed to accelerate worm handling, phenotypic studies and screens. Here we review major tools and briefly discuss their usage in C. elegans research.
Collapse
Affiliation(s)
- Bhagwati P Gupta
- Department of Biology, McMaster University, Hamilton, ON L8S 4K1, Canada.
| | - Pouya Rezai
- Department of Mechanical Engineering, York University, Toronto, ON M3J 1P3, Canada.
| |
Collapse
|
25
|
Hu C, Kearn J, Urwin P, Lilley C, O' Connor V, Holden-Dye L, Morgan H. StyletChip: a microfluidic device for recording host invasion behaviour and feeding of plant parasitic nematodes. LAB ON A CHIP 2014; 14:2447-2455. [PMID: 24839944 DOI: 10.1039/c4lc00292j] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Plant parasitic nematodes (PPNs) infest the roots of crops and cause global losses with a severe economic impact on food production. Current chemical control agents are being removed from use due to environmental and toxicity concerns and there is a need for new approaches to crop protection. A key feature of parasitic behaviour for the majority of PPNs is a hollow stomastyle or odontostyle required for interaction with the host plant and feeding. This lance-like microscopic structure, often called a stylet, protrudes from the mouth of the worm and thrusts in a rhythmic manner to stab the host root. Studying stylet activity presents technical challenges and as a consequence the underlying biology is poorly understood. We have addressed this by designing a microfluidic chip which traps the PPN Globodera pallida and permits the recording of an electrophysiological signal concomitant with stylet thrusting. The PDMS chip incorporates a precisely designed aperture to trap the nematode securely around a mid-point of its body. It is fabricated using a novel combination of conventional photolithography and two photon polymerization. The chip incorporates valves for rapid application of test compounds and integral electrodes to facilitate acquisition of electrical signals. We show that stylet thrusting can be induced by controlled application of 5-HT (serotonin) to the worm. Each thrust and retraction produces an electrical waveform that characterises the physiological activity associated with the worm's behaviour. The ability to reproducibly record the stylet activity of PPNs provides a new platform for nematicide screening that specifically focuses on a behaviour that is integral to the parasite host interaction. This is the first report of a microfluidic chip capable of electrophysiological recording from nematodes other than Caenorhabditis elegans. The unique approach is optimised for trapping and recording from smaller worms or worms with distinct anterior body shapes and may be applied to other species of economic or medical importance.
Collapse
Affiliation(s)
- Chunxiao Hu
- Faculty of Physical Sciences and Engineering, and Institute for Life Sciences, University of Southampton, Southampton, SO17 1BJ, UK.
| | | | | | | | | | | | | |
Collapse
|
26
|
Bakhtina NA, Korvink JG. Microfluidic laboratories for C. elegans enhance fundamental studies in biology. RSC Adv 2014. [DOI: 10.1039/c3ra43758b] [Citation(s) in RCA: 57] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
|
27
|
Mondal S, Koushika SP. Microfluidic devices for imaging trafficking events in vivo using genetic model organisms. Methods Mol Biol 2014; 1174:375-96. [PMID: 24947396 DOI: 10.1007/978-1-4939-0944-5_26] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Miniature devices are powerful new tools that can be used to address multiple questions in biology especially in investigating an individual cell or organism. The primary step forward has been the ease of soft lithography fabrication which has allowed researchers from different disciplines, with incomplete technical knowledge, to develop and use new devices for their own research problems. In this chapter, we describe a simple fabrication process that will allow investigators to make microfluidic devices for in vivo imaging studies using genetic model organisms such as C. elegans, Drosophila larvae, and zebrafish larvae. This microfluidic technology enables detailed studies on multiple cellular and subcellular phenomena including intracellular vesicle trafficking in living organisms over different developmental stages in an anesthetic free environment.
Collapse
Affiliation(s)
- Sudip Mondal
- Department of Mechanical Engineering, University of Texas at Austin, Austin, TX, USA
| | | |
Collapse
|