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Hao P, Jiang X, Rao X, Liang W, Zhang Y. Population Monitoring of the Red Junglefowl Based on Acoustic Signal Recognition Technology. Ecol Evol 2025; 15:e71280. [PMID: 40242796 PMCID: PMC12000762 DOI: 10.1002/ece3.71280] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2025] [Revised: 03/24/2025] [Accepted: 03/31/2025] [Indexed: 04/18/2025] Open
Abstract
Vocalisation is a crucial means of communication for birds and plays a key role in survival and reproductive success. Individual differences in songs have been used for identification in many animals, but few studies have integrated song individuality into wildlife population monitoring. The male red junglefowl Gallus gallus jabouillei is a tropical forest bird that primarily uses acoustic signals for conspecific communication. From July to August 2020, the calls of 34 pasture-raised red junglefowl were recorded for individual identification based on vocalisations. Fieldwork was conducted from March to May 2021 in the Datian National Nature Reserve, Hainan, China, during which microphone arrays were deployed to record the calls of wild red junglefowl throughout their breeding season. Discriminant function analysis (DFA) was applied to identify pasture-raised red junglefowl individuals, achieving a correct identification rate of 95.7%. Affinity propagation (AP) clustering was used to perform unsupervised clustering based on pairwise syllable similarities, resulting in 34 clusters corresponding to the actual number of individuals, with a correct syllable type recognition rate of 99.4%. Kaleidoscope software was used to extract the call during the breeding period of the wild population of red junglefowl; the precision rate was 80.38%, and the recall rate was 75.85%. Using AP clustering for vocalisation analysis, the estimated population in the core area was approximately 205 male individuals, with a manual verification accuracy of 82.5%. This result is slightly lower than the estimate of 234 individuals obtained using vocal count and random encounter methods. Our study demonstrated the potential of affinity propagation clustering techniques for estimating the population size of wild red junglefowl.
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Affiliation(s)
- Peipei Hao
- Ministry of Education Key Laboratory for Biodiversity and Ecological Engineering, College of Life SciencesBeijing Normal UniversityBeijingChina
| | - Xingyi Jiang
- Ministry of Education Key Laboratory for Biodiversity and Ecological Engineering, College of Life SciencesBeijing Normal UniversityBeijingChina
| | - Xiaodong Rao
- School of Tropical Agriculture and Forestry5 Hainan UniversityDanzhouChina
- Haikou Key Laboratory of Intelligent ForestryHaikouChina
| | - Wei Liang
- Ministry of Education Key Laboratory for Ecology of Tropical Islands, Key Laboratory of Tropical Animal and Plant Ecology of Hainan ProvinceCollege of Life Sciences, Hainan Normal UniversityHaikouChina
| | - Yanyun Zhang
- Ministry of Education Key Laboratory for Biodiversity and Ecological Engineering, College of Life SciencesBeijing Normal UniversityBeijingChina
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2
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Boiani MV, Dupont P, Bischof R, Milleret C, Friard O, Geary M, Avanzinelli E, von Hardenberg A, Marucco F. When enough is enough: Optimising monitoring effort for large-scale wolf population size estimation in the Italian Alps. Ecol Evol 2024; 14:e70204. [PMID: 39170053 PMCID: PMC11337114 DOI: 10.1002/ece3.70204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2024] [Revised: 07/29/2024] [Accepted: 08/07/2024] [Indexed: 08/23/2024] Open
Abstract
The ongoing expansion of wolf (Canis lupus) populations in Europe has led to a growing demand for up-to-date abundance estimates. Non-invasive genetic sampling (NGS) is now widely used to monitor wolves, as it allows individual identification and abundance estimation without physically capturing individuals. However, NGS is resource-intensive, partly due to the elusive behaviour and wide distribution of wolves, as well as the cost of DNA analyses. Optimisation of sampling strategies is therefore a requirement for the long-term sustainability of wolf monitoring programs. Using data from the 2020-2021 Italian Alpine wolf monitoring, we investigate how (i) reducing the number of samples genotyped, (ii) reducing the number of transects, and (iii) reducing the number of repetitions of each search transect impacted spatial capture-recapture population size estimates. Our study revealed that a 25% reduction in the number of transects or, alternatively, a 50% reduction in the maximum number of repetitions yielded abundance estimates comparable to those obtained using the entire dataset. These modifications would result in a 2046 km reduction in total transect length and 19,628 km reduction in total distance searched. Further reducing the number of transects resulted in up to 15% lower and up to 17% less precise abundance estimates. Reducing only the number of genotyped samples led to higher (5%) and less precise (20%) abundance estimates. Randomly subsampling genotyped samples reduced the number of detections per individual, whereas subsampling search transects resulted in a less pronounced decrease in both the total number of detections and individuals detected. Our work shows how it is possible to optimise wolf monitoring by reducing search effort while maintaining the quality of abundance estimates, by adopting a modelling framework that uses a first survey dataset. We further provide general guidelines on how to optimise sampling effort when using spatial capture-recapture in large-scale monitoring programmes.
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Affiliation(s)
- M. V. Boiani
- Department of Biological SciencesConservation Biology Research Group, University of ChesterChesterUK
| | - P. Dupont
- Faculty of Environmental Sciences and Natural Resource ManagementNorwegian University of Life SciencesÅsNorway
| | - R. Bischof
- Faculty of Environmental Sciences and Natural Resource ManagementNorwegian University of Life SciencesÅsNorway
| | - C. Milleret
- Faculty of Environmental Sciences and Natural Resource ManagementNorwegian University of Life SciencesÅsNorway
| | - O. Friard
- Department of Life Sciences and Systems BiologyUniversity of TurinTurinItaly
| | - M. Geary
- Department of Biological SciencesConservation Biology Research Group, University of ChesterChesterUK
| | - E. Avanzinelli
- Centro Grandi Carnivori, Ente di Gestione Aree Protette Alpi MarittimeValdieriCuneoItaly
| | - A. von Hardenberg
- Department of Earth and Environmental SciencesUniversity of PaviaPaviaPaviaItaly
| | - F. Marucco
- Department of Life Sciences and Systems BiologyUniversity of TurinTurinItaly
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Alting BF, Pitcher BJ, Rees MW, Ferrer‐Paris JR, Jordan NR. Population density and ranging behaviour of a generalist carnivore varies with human population. Ecol Evol 2024; 14:e11404. [PMID: 38779530 PMCID: PMC11109528 DOI: 10.1002/ece3.11404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Revised: 04/18/2024] [Accepted: 04/30/2024] [Indexed: 05/25/2024] Open
Abstract
Canid species are highly adaptable, including to urban and peri-urban areas, where they can come into close contact with people. Understanding the mechanisms of wild canid population persistence in these areas is key to managing any negative impacts. The resource dispersion hypothesis predicts that animal density increases and home range size decreases as resource concentration increases, and may help to explain how canids are distributed in environments with an urban-natural gradient. In Australia, dingoes have adapted to human presence, sometimes living in close proximity to towns. Using a targeted camera trap survey and spatial capture-recapture models, we estimated spatial variation in the population density and detection rates of dingoes on Worimi Country in the Great Lakes region of the NSW coast. We tested whether dingo home range and population densities varied across a gradient of human population density, in a mixed-use landscape including, urban, peri-urban, and National Park environs. We found human population density to be a strong driver of dingo density (ranging from 0.025 to 0.433 dingoes/km2 across the natural-urban gradient), and to have a negative effect on dingo home range size. The spatial scale parameter changed depending on survey period, being smaller in the peak tourism period, when human population increases in the area, than in adjacent survey periods, potentially indicating reduced home range size when additional resources are available. Our study highlights the potential value of managing anthropogenic resource availability to manage carnivore densities and potential risk of human-carnivore interactions.
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Affiliation(s)
- Brendan F. Alting
- Centre for Ecosystem Science, School of Biological, Earth and Environmental SciencesUniversity of New South Wales (UNSW)SydneyNew South WalesAustralia
| | - Benjamin J. Pitcher
- Taronga Institute of Science and Learning, Taronga Conservation SocietyDubbo and SydneyNew South WalesAustralia
- Faculty of Science and Engineering, School of Natural SciencesMacquarie UniversitySydneyNew South WalesAustralia
| | - Matthew W. Rees
- Health and Biosecurity DepartmentCommonwealth Science and Industrial Research OrganisationBrisbaneQueenslandAustralia
| | - José R. Ferrer‐Paris
- Centre for Ecosystem Science, School of Biological, Earth and Environmental SciencesUniversity of New South Wales (UNSW)SydneyNew South WalesAustralia
| | - Neil R. Jordan
- Centre for Ecosystem Science, School of Biological, Earth and Environmental SciencesUniversity of New South Wales (UNSW)SydneyNew South WalesAustralia
- Taronga Institute of Science and Learning, Taronga Conservation SocietyDubbo and SydneyNew South WalesAustralia
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4
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Bardales R, Boron V, Passos Viana DF, Sousa LL, Dröge E, Porfirio G, Jaramillo M, Payán E, Sillero-Zubiri C, Hyde M. Neotropical mammal responses to megafires in the Brazilian Pantanal. GLOBAL CHANGE BIOLOGY 2024; 30:e17278. [PMID: 38655695 DOI: 10.1111/gcb.17278] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2023] [Revised: 03/19/2024] [Accepted: 03/21/2024] [Indexed: 04/26/2024]
Abstract
The increasing frequency and severity of human-caused fires likely have deleterious effects on species distribution and persistence. In 2020, megafires in the Brazilian Pantanal burned 43% of the biome's unburned area and resulted in mass mortality of wildlife. We investigated changes in habitat use or occupancy for an assemblage of eight mammal species in Serra do Amolar, Brazil, following the 2020 fires using a pre- and post-fire camera trap dataset. Additionally, we estimated the density for two naturally marked species, jaguars Panthera onca and ocelots Leopardus pardalis. Of the eight species, six (ocelots, collared peccaries Dicotyles tajacu, giant armadillos Priodontes maximus, Azara's agouti Dasyprocta azarae, red brocket deer Mazama americana, and tapirs Tapirus terrestris) had declining occupancy following fires, and one had stable habitat use (pumas Puma concolor). Giant armadillo experienced the most precipitous decline in occupancy from 0.431 ± 0.171 to 0.077 ± 0.044 after the fires. Jaguars were the only species with increasing habitat use, from 0.393 ± 0.127 to 0.753 ± 0.085. Jaguar density remained stable across years (2.8 ± 1.3, 3.7 ± 1.3, 2.6 ± 0.85/100 km2), while ocelot density increased from 13.9 ± 3.2 to 16.1 ± 5.2/100 km2. However, the low number of both jaguars and ocelots recaptured after the fire period suggests that immigration may have sustained the population. Our results indicate that the megafires will have significant consequences for species occupancy and fitness in fire-affected areas. The scale of megafires may inhibit successful recolonization, thus wider studies are needed to investigate population trends.
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Affiliation(s)
- Rocío Bardales
- Wildlife Conservation Research Unit, Department of Biology, The Recanati-Kaplan Centre, University of Oxford, Abingdon, UK
- Panthera Cooperation, New York, New York, USA
| | - Valeria Boron
- Panthera Cooperation, New York, New York, USA
- The Living Planet Centre, World Wide Fund for Nature (WWF) UK, Woking, Surrey, UK
| | | | - Lara L Sousa
- Wildlife Conservation Research Unit, Department of Biology, The Recanati-Kaplan Centre, University of Oxford, Abingdon, UK
| | - Egil Dröge
- Wildlife Conservation Research Unit, Department of Biology, The Recanati-Kaplan Centre, University of Oxford, Abingdon, UK
- Zambian Carnivore Programme, Mfuwe, Zambia
| | | | | | - Esteban Payán
- Panthera Cooperation, New York, New York, USA
- Wildlife Conservation Society, New York, New York, USA
| | - Claudio Sillero-Zubiri
- Wildlife Conservation Research Unit, Department of Biology, The Recanati-Kaplan Centre, University of Oxford, Abingdon, UK
| | - Matthew Hyde
- Panthera Cooperation, New York, New York, USA
- Graduate Degree Program in Ecology, Center for Human-Carnivore Coexistence, Colorado State University, Fort Collins, Colorado, USA
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5
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Palmero S, Smith AF, Kudrenko S, Gahbauer M, Dachs D, Weingarth‐Dachs K, Kashpei I, Shamovich D, Vyshnevskiy D, Borsuk O, Korepanova K, Bashta A, Zhuravchak R, Fenchuk V, Heurich M. Shining a light on elusive lynx: Density estimation of three Eurasian lynx populations in Ukraine and Belarus. Ecol Evol 2023; 13:e10688. [PMID: 37953989 PMCID: PMC10636425 DOI: 10.1002/ece3.10688] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2023] [Revised: 10/11/2023] [Accepted: 10/19/2023] [Indexed: 11/14/2023] Open
Abstract
The Eurasian lynx is a large carnivore widely distributed across Eurasia. However, our understanding of population status is heterogeneous across their range, with some populations isolated that are at risk of reduced genetic variation and a complete lack of information about others. In many European countries, Eurasian lynx are monitored through demographic studies crucial for their conservation and management. Even so, there are only rough and fragmented population assessments from Ukraine and Belarus, despite strict protection in both countries and their importance for lynx connectivity across Europe. We monitored lynx from October 2020 to March 2021 and used camera trapping in combination with spatial capture-recapture (SCR) methods in a Bayesian framework to provide the first SCR density estimation of three lynx populations across Ukraine and Belarus, including the Ukrainian Chornobyl Exclusion Zone, southern Belarus and the Ukrainian Carpathians. Our density estimates varied within our study areas ranging from 0.45 to 1.54 individuals/100 km2. This work provides a substantial scientific component to the overall understanding of lynx conservation for a region where only broad information is available and opens the doors for further large-scale monitoring and trend assessments. The crucial information we provide can greatly enhance the range-wide assessments of the status of this protected species. We also discuss the implications for Eurasian lynx conservation, despite the geopolitical realities impacting species monitoring in the region. Our work serves as a baseline, not only for future conservation interventions but also to evaluate the effects of disturbance and threats to these protected populations.
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Affiliation(s)
- Stefano Palmero
- Department of Wildlife Ecology and Management, Faculty of Environment and Natural ResourcesUniversity of FreiburgFreiburgGermany
- Department of National Park Monitoring and Animal ManagementBavarian Forest National ParkGrafenauGermany
| | - Adam F. Smith
- Department of Wildlife Ecology and Management, Faculty of Environment and Natural ResourcesUniversity of FreiburgFreiburgGermany
- Department of National Park Monitoring and Animal ManagementBavarian Forest National ParkGrafenauGermany
- The Frankfurt Zoological SocietyFrankfurtGermany
| | - Svitlana Kudrenko
- Department of National Park Monitoring and Animal ManagementBavarian Forest National ParkGrafenauGermany
- The Frankfurt Zoological SocietyFrankfurtGermany
- Faculty of Technology, Natural Sciences and Maritime Sciences, Department of Natural Sciences and Environmental HealthUniversity of South‐Eastern NorwayBøNorway
| | - Martin Gahbauer
- Department of National Park Monitoring and Animal ManagementBavarian Forest National ParkGrafenauGermany
| | | | | | | | | | | | - Oleksandr Borsuk
- Chornobyl Radiation and Ecological Biosphere ReserveIvankivUkraine
| | | | - Andriy‐Taras Bashta
- Institute of Ecology of the CarpathiansNational Academy of Sciences of UkraineLvivUkraine
- Skolivski Beskydy National ParkSkoleUkraine
| | | | | | - Marco Heurich
- Department of Wildlife Ecology and Management, Faculty of Environment and Natural ResourcesUniversity of FreiburgFreiburgGermany
- Department of National Park Monitoring and Animal ManagementBavarian Forest National ParkGrafenauGermany
- Faculty of Applied Ecology, Agricultural Sciences and BiotechnologyInland Norway University of Applied SciencesEvenstadNorway
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6
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Mendonça EN, Albernaz AL, Costa Lopes AM, Carvalho EAR. Jaguar density in the most threatened ecoregion of the Amazon. MAMMALIA 2023. [DOI: 10.1515/mammalia-2022-0058] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Abstract
Population parameters provide essential information for conservation efforts aimed at target species. We used the spatially explicit capture-recapture method to estimate the jaguar density and population size in the Gurupi Jaguar Conservation Unit (JCU), located in the most threatened ecoregion of the Amazon. The estimated density of 2.62 individuals/100 km2 in a continuous forest of over 10,000 km2 implies a small effective population size, underscoring the threat to the long-term viability of the Gurupi JCU’s jaguar population. We recommend urgent forest restoration actions to reduce fragmentation and improve connectivity between Gurupi JCU and other forest fragments to facilitate jaguar gene flow.
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Affiliation(s)
- Eloisa Neves Mendonça
- Museu Paraense Emilio Goeldi/MPEG , Coordenação de Ciências da Terra e Ecologia , Av. Perimetral , 1901 , Terra Firme , Belém (PA) CEP 66077-830 , Brasil
- Instituto Chico Mendes de Conservação da Biodiversidade/ICMBio , Reserva Biológica do Gurupi , Rodovia BR 222 , km 12, Pequiá , Açailândia (MA) CEP 65930-000 , Brasil
| | - Ana Luisa Albernaz
- Museu Paraense Emilio Goeldi/MPEG , Coordenação de Ciências da Terra e Ecologia , Av. Perimetral , 1901 , Terra Firme , Belém (PA) CEP 66077-830 , Brasil
| | - Alexandre Martins Costa Lopes
- Instituto de Pesquisa e Conservação de Tamanduás no Brasil , Rua Acanã, 11 , Ilhéus (BA) CEP 45655-718 , Brasil
- Universidade Federal do Piauí, Programa de Pós-graduação em Biodiversidade e Conservação, Campus Universitário Amílcar Ferreira Sobral , Meladão , Floriano (PI) CEP 64.800-000 , Brasil
| | - Elildo A. R. Carvalho
- Instituto Chico Mendes de Conservação da Biodiversidade/ICMBio , Centro Nacional de Pesquisa e Conservação de Mamíferos Carnívoros/CENAP , Estrada Municipal Hisaichi Takebayashi , 8600 , Bairro da Usina , Atibaia (SP) CEP 12952-011 , Brasil
- Faculty of Ecology and Natural Resource Management , Norwegian University of Life Sciences , P.O. Box 5003 , 1432 Ås , Norway
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Devlin AL, Frair JL, Crawshaw PG, Hunter LTB, Tortato FR, Hoogesteijn R, Robinson N, Robinson HS, Quigley HB. Drivers of large carnivore density in non‐hunted, multi‐use landscapes. CONSERVATION SCIENCE AND PRACTICE 2023. [DOI: 10.1111/csp2.12745] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
Affiliation(s)
- Allison L. Devlin
- Department of Environmental and Forest Biology SUNY College of Environmental Science and Forestry New York New York USA
- Panthera New York New York USA
- Wildlife Biology Program, W.A. Franke College of Forestry and Conservation University of Montana Missoula Montana USA
| | - Jacqueline L. Frair
- Department of Environmental and Forest Biology SUNY College of Environmental Science and Forestry New York New York USA
| | - Peter G. Crawshaw
- Centro Nacional de Pesquisa e Conservação de Mamíferos Carnívoros/Instituto Chico Mendes de Conservação da Biodiversidade Atibaia Brazil
| | | | | | | | - Nathaniel Robinson
- Panthera New York New York USA
- The Nature Conservancy Arlington Virginia USA
| | - Hugh S. Robinson
- Panthera New York New York USA
- Wildlife Biology Program, W.A. Franke College of Forestry and Conservation University of Montana Missoula Montana USA
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Foster RJ, Harmsen BJ. Dietary similarity among jaguars (Panthera onca) in a high-density population. PLoS One 2022; 17:e0274891. [PMID: 36215244 PMCID: PMC9550027 DOI: 10.1371/journal.pone.0274891] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Accepted: 09/06/2022] [Indexed: 11/06/2022] Open
Abstract
Prey remains found in carnivore scats provide generalised dietary profiles of sampled populations. The profile may be biased if individual diets differ and some individuals are over- or under-represented in the sample. Quantifying individual contributions allows us to recognise these potential biases and better interpret generalised profiles. Knowing the dietary differences or similarity between individuals can help us to understand selection pressures and identify drivers of distribution and abundance. Using the results of individual faecal genotyping, we re-interpreted our previously-published generalised dietary profile of an elusive, neotropical felid, the jaguar (Panthera onca; Foster et al. (2010)). We quantified individual sample sizes, assessed whether the generalised profile was influenced by the inclusion of scats originating from the same individual and prey carcass (pseudo-replication), and quantified the distribution of prey species among individuals. From an original sample of 322 jaguar scats from a high-density jaguar population in Belize, we identified 206 prey items (individual prey animals) in 176 independent scats representing 32 jaguars (26 males, 3 females, 3 unknown sex). The influence of pseudo-replication in the original dietary profile was minimal. The majority of scats (94%) came from male jaguars. Eight males accounted for two-thirds of the prey items, while 24 jaguars each contributed <5% of the prey items. With few exceptions, the jaguars followed the same broad diet, a 2:1:1 ratio of nine-banded armadillos (Dasypus noveminctus), other vertebrates ≤10kg, and ungulates, primarily peccaries (Tayassu pecari and Pecari tajacu). We noted prey switching between wild and domestic ungulates for individuals spanning protected forests and farmland. This first scat-based study exploring individual variation in jaguar diet highlights the importance of armadillos and peccaries for male jaguars in Belize, the need for research on their roles in supporting high-density jaguar populations, and the need for more data on female diet from across the jaguar range.
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Gardner B, McClintock BT, Converse SJ, Hostetter NJ. Integrated animal movement and spatial capture-recapture models: Simulation, implementation, and inference. Ecology 2022; 103:e3771. [PMID: 35638187 PMCID: PMC9787507 DOI: 10.1002/ecy.3771] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/28/2021] [Revised: 03/18/2022] [Accepted: 04/19/2022] [Indexed: 12/30/2022]
Abstract
Over the last decade, spatial capture-recapture (SCR) models have become widespread for estimating demographic parameters in ecological studies. However, the underlying assumptions about animal movement and space use are often not realistic. This is a missed opportunity because interesting ecological questions related to animal space use, habitat selection, and behavior cannot be addressed with most SCR models, despite the fact that the data collected in SCR studies - individual animals observed at specific locations and times - can provide a rich source of information about these processes and how they relate to demographic rates. We developed SCR models that integrated more complex movement processes that are typically inferred from telemetry data, including a simple random walk, correlated random walk (i.e., short-term directional persistence), and habitat-driven Langevin diffusion. We demonstrated how to formulate, simulate from, and fit these models with standard SCR data using data-augmented Bayesian analysis methods. We evaluated their performance through a simulation study, in which we varied the detection, movement, and resource selection parameters. We also examined different numbers of sampling occasions and assessed performance gains when including auxiliary location data collected from telemetered individuals. Across all scenarios, the integrated SCR movement models performed well in terms of abundance, detection, and movement parameter estimation. We found little difference in bias for the simple random walk model when reducing the number of sampling occasions from T = 25 to T = 15. We found some bias in movement parameter estimates under several of the correlated random walk scenarios, but incorporating auxiliary location data improved parameter estimates and significantly improved mixing during model fitting. The Langevin movement model was able to recover resource selection parameters from standard SCR data, which is particularly appealing because it explicitly links the individual-level movement process with habitat selection and population density. We focused on closed population models, but the movement models developed here can be extended to open SCR models. The movement process models could also be easily extended to accommodate additional "building blocks" of random walks, such as central tendency (e.g., territoriality) or multiple movement behavior states, thereby providing a flexible and coherent framework for linking animal movement behavior to population dynamics, density, and distribution.
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Affiliation(s)
- Beth Gardner
- School of Environmental and Forest SciencesUniversity of WashingtonSeattleWashingtonUSA
| | - Brett T. McClintock
- Marine Mammal LaboratoryNOAA‐NMFS Alaska Fisheries Science CenterSeattleWashingtonUSA
| | - Sarah J. Converse
- U.S. Geological Survey, Washington Cooperative Fish and Wildlife Research Unit, School of Environmental and Forest Sciences and School of Aquatic and Fishery SciencesUniversity of WashingtonSeattleWashingtonUSA
| | - Nathan J. Hostetter
- U.S. Geological Survey, North Carolina Cooperative Fish and Wildlife Research Unit, Department of Applied EcologyNorth Carolina State UniversityRaleighNorth CarolinaUSA
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Theng M, Milleret C, Bracis C, Cassey P, Delean S. Confronting spatial capture-recapture models with realistic animal movement simulations. Ecology 2022; 103:e3676. [PMID: 35253209 DOI: 10.1002/ecy.3676] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/10/2021] [Revised: 08/26/2021] [Accepted: 09/14/2021] [Indexed: 12/13/2022]
Abstract
Spatial capture-recapture (SCR) models have emerged as a robust method to estimate the population density of mobile animals. However, model evaluation has generally been based on data simulated from simplified representations of animal space use. Here, we generated data from animal movement simulated from a mechanistic individual-based model, in which movement emerges from the individual's response to a changing environment (i.e., from the bottom-up), driven by key ecological processes (e.g., resource memory and territoriality). We drew individual detection data from simulated movement trajectories and fitted detection data sets to a basic, resource selection and transience SCR model, as well as their variants accounting for resource-driven heterogeneity in density and detectability. Across all SCR models, abundance estimates were robust to multiple, but low-degree violations of the specified movement processes (e.g., resource selection). SCR models also successfully captured the positive effect of resource quality on density. However, covariate models failed to capture the finer scale effect of resource quality on detectability and space use, which may be a consequence of the low temporal resolution of SCR data sets and/or model misspecification. We show that home-range size is challenging to infer from the scale parameter alone, compounded by reliance on conventional measures of "true" home-range size that are highly sensitive to sampling regime. Additionally, we found the transience model challenging to fit, probably due to data sparsity and violation of the assumption of normally distributed inter-occasion movement of activity centers, suggesting that further development of the model is required for general applicability. Our results showed that further integration of complex movement into SCR models may not be necessary for population estimates of abundance when the level of individual heterogeneity induced by the underlying movement process is low, but appears warranted in terms of accurately revealing finer scale patterns of ecological and movement processes. Further investigation into whether this holds true in populations with other types of realistic movement characteristics is merited. Our study provides a framework to generate realistic SCR data sets to develop and evaluate more complex movement processes in SCR models.
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Affiliation(s)
- Meryl Theng
- School of Biological Sciences, University of Adelaide, Adelaide, South Australia, Australia
| | - Cyril Milleret
- Faculty of Environmental Sciences and Natural Resource Management, Norwegian University of Life Sciences, Ås, Norway
| | - Chloe Bracis
- TIMC / MAGE, Université Grenoble Alpes, Grenoble, France
| | - Phillip Cassey
- School of Biological Sciences, University of Adelaide, Adelaide, South Australia, Australia
| | - Steven Delean
- School of Biological Sciences, University of Adelaide, Adelaide, South Australia, Australia
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11
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Density Estimation in Terrestrial Chelonian Populations Using Spatial Capture–Recapture and Search–Encounter Surveys. J HERPETOL 2022. [DOI: 10.1670/21-016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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12
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Pereira KS, Gibson L, Biggs D, Samarasinghe D, Braczkowski AR. Individual Identification of Large Felids in Field Studies: Common Methods, Challenges, and Implications for Conservation Science. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.866403] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023] Open
Abstract
Large felids represent some of the most threatened large mammals on Earth, critical for both tourism economies and ecosystem function. Most populations are in a state of decline, and their monitoring and enumeration is therefore critical for conservation. This typically rests on the accurate identification of individuals within their populations. We review the most common and current survey methods used in individual identification studies of large felid ecology (body mass > 25 kg). Remote camera trap photography is the most extensively used method to identify leopards, snow leopards, jaguars, tigers, and cheetahs which feature conspicuous and easily identifiable coat patterning. Direct photographic surveys and genetic sampling are commonly used for species that do not feature easily identifiable coat patterning such as lions. We also discuss the accompanying challenges encountered in several field studies, best practices that can help increase the precision and accuracy of identification and provide generalised ratings for the common survey methods used for individual identification.
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Dey S, Bischof R, Dupont PPA, Milleret C. Does the punishment fit the crime? Consequences and diagnosis of misspecified detection functions in Bayesian spatial capture-recapture modeling. Ecol Evol 2022; 12:e8600. [PMID: 35222967 PMCID: PMC8847120 DOI: 10.1002/ece3.8600] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Revised: 01/14/2022] [Accepted: 01/19/2022] [Indexed: 11/11/2022] Open
Abstract
Spatial capture-recapture (SCR) analysis is now used routinely to inform wildlife management and conservation decisions. It is therefore imperative that we understand the implications of and can diagnose common SCR model misspecifications, as flawed inferences could propagate to policy and interventions. The detection function of an SCR model describes how an individual's detections are distributed in space. Despite the detection function's central role in SCR, little is known about the robustness of SCR-derived abundance estimates and home range size estimates to misspecifications. Here, we set out to (a) determine whether abundance estimates are robust to a wider range of misspecifications of the detection function than previously explored, (b) quantify the sensitivity of home range size estimates to the choice of detection function, and (c) evaluate commonly used Bayesian p-values for detecting misspecifications thereof. We simulated SCR data using different circular detection functions to emulate a wide range of space use patterns. We then fit Bayesian SCR models with three detection functions (half-normal, exponential, and half-normal plateau) to each simulated data set. While abundance estimates were very robust, estimates of home range size were sensitive to misspecifications of the detection function. When misspecified, SCR models with the half-normal plateau and exponential detection functions produced the most and least reliable home range size, respectively. Misspecifications with the strongest impact on parameter estimates were easily detected by Bayesian p-values. Practitioners using SCR exclusively for density estimation are unlikely to be impacted by misspecifications of the detection function. However, the choice of detection function can have substantial consequences for the reliability of inferences about space use. Although Bayesian p-values can aid the diagnosis of detection function misspecification under certain conditions, we urge the development of additional custom goodness-of-fit diagnostics for Bayesian SCR models to identify a wider range of model misspecifications.
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Affiliation(s)
- Soumen Dey
- Faculty of Environmental Sciences and Natural Resource ManagementNorwegian University of Life SciencesÅsNorway
| | - Richard Bischof
- Faculty of Environmental Sciences and Natural Resource ManagementNorwegian University of Life SciencesÅsNorway
| | - Pierre P. A. Dupont
- Faculty of Environmental Sciences and Natural Resource ManagementNorwegian University of Life SciencesÅsNorway
| | - Cyril Milleret
- Faculty of Environmental Sciences and Natural Resource ManagementNorwegian University of Life SciencesÅsNorway
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14
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Population density estimate of leopards (Panthera pardus) in north-western Mpumalanga, South Africa, determined using spatially explicit capture–recapture methods. Mamm Biol 2021. [DOI: 10.1007/s42991-021-00179-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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15
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Pal R, Sutherland C, Qureshi Q, Sathyakumar S. Landscape connectivity and population density of snow leopards across a multi‐use landscape in Western Himalaya. Anim Conserv 2021. [DOI: 10.1111/acv.12754] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- R. Pal
- Wildlife Institute of India Dehradun Uttarakhand India
| | - C. Sutherland
- Centre for Research into Ecological and Environmental Modelling University of St Andrews Scotland UK
| | - Q. Qureshi
- Wildlife Institute of India Dehradun Uttarakhand India
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Spatial Ecology and Diel Activity of European Wildcat ( Felis silvestris) in a Protected Lowland Area in Northern Greece. Animals (Basel) 2021; 11:ani11113030. [PMID: 34827762 PMCID: PMC8614438 DOI: 10.3390/ani11113030] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2021] [Revised: 10/11/2021] [Accepted: 10/19/2021] [Indexed: 01/08/2023] Open
Abstract
Simple Summary The European wildcat is a species of conservation concern protected across its range in Europe, where it occurs in five discontinuous populations. The Balkan population has received little attention, making it difficult to assess whether the ecological traits reported for other populations apply also to this population. This hampers the development of targeted conservation measures. The present study reports the first findings on the spatial ecology and daily activity pattern of wildcats in a human modified landscape in Greece, using cutting edge data loggers attached to wildcat collars. In Greece, wildcat home range sizes are within the range of those reported for other populations. Male wildcats are active primarily at night and near dawn and dusk, as is typical for the species. However, the activity of some females varied from this pattern in late spring, in ways expected for wildcats, caring for offspring at a den. Overall, our findings help fill the ecological knowledge gap of the species in Greece and suggest that lowland agricultural areas with patches of natural habitats may have a significant role in the future conservation of the species. Abstract The Balkan populations of the European wildcat are among the least studied. This study reports the first findings on the spatial ecology and activity pattern of the wildcat in Greece and compares them to those of better studied northern populations. We fitted five wildcats (two males, three females) with collars containing GPS and accelerometer loggers (E-obs 1A) and collected data from fall to early summer. All animals moved within a mosaic of lowland agricultural fields, woodland patches, riparian forests and wetlands near the banks of a lake. The trapping rate was the highest reported for the species. The home range sizes, estimated using Brownian bridge movement models, ranged from 0.94 to 3.08 km2 for females and from 1.22 to 4.43 km2 for males. Based on overall dynamic body acceleration (ODBA) values estimated from the accelerometer data, the diel activity of male wildcats followed the species’ typical nocturnal pattern with crepuscular peaks. Female activity varied seasonally, at times being cathemeral. We found only weak effects of environmental variables on wildcat activity, and no significant difference in the activity in open versus forested areas. Our findings suggest that human modified landscapes can play a significant role in the conservation of this typically forest-associated species.
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Phumanee W, Steinmetz R, Phoonjampa R, Weingdow S, Phokamanee S, Bhumpakphan N, Savini T. Tiger density, movements, and immigration outside of a tiger source site in Thailand. CONSERVATION SCIENCE AND PRACTICE 2021. [DOI: 10.1111/csp2.560] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022] Open
Affiliation(s)
- Worrapan Phumanee
- Conservation Ecology Program, School of Bioresources and Technology, King Mongkut's University of Technology Thonburi Bangkok Thailand
- WWF‐Thailand Bangkok Thailand
| | | | | | - Suthon Weingdow
- Department of National Parks Wildlife and Plant Conservation Bangkok Thailand
| | - Surachai Phokamanee
- Department of National Parks Wildlife and Plant Conservation Bangkok Thailand
| | | | - Tommaso Savini
- Conservation Ecology Program, School of Bioresources and Technology, King Mongkut's University of Technology Thonburi Bangkok Thailand
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18
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Thompson JJ, Morato RG, Niebuhr BB, Alegre VB, Oshima JEF, de Barros AE, Paviolo A, de la Torre JA, Lima F, McBride RT, Cunha de Paula R, Cullen L, Silveira L, Kantek DLZ, Ramalho EE, Maranhão L, Haberfeld M, Sana DA, Medellin RA, Carrillo E, Montalvo VH, Monroy-Vilchis O, Cruz P, Jacomo ATA, Alves GB, Cassaigne I, Thompson R, Sáenz-Bolaños C, Cruz JC, Alfaro LD, Hagnauer I, Xavier da Silva M, Vogliotti A, Moraes MFD, Miyazaki SS, Araujo GR, Cruz da Silva L, Leuzinger L, Carvalho MM, Rampim L, Sartorello L, Quigley H, Tortato FR, Hoogesteijn R, Crawshaw PG, Devlin AL, May Júnior JA, Powell GVN, Tobler MW, Carrillo-Percastegui SE, Payán E, Azevedo FCC, Concone HVB, Quiroga VA, Costa SA, Arrabal JP, Vanderhoeven E, Di Blanco YE, Lopes AMC, Ribeiro MC. Environmental and anthropogenic factors synergistically affect space use of jaguars. Curr Biol 2021; 31:3457-3466.e4. [PMID: 34237270 DOI: 10.1016/j.cub.2021.06.029] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2020] [Revised: 03/04/2021] [Accepted: 06/10/2021] [Indexed: 01/05/2023]
Abstract
Large terrestrial carnivores have undergone some of the largest population declines and range reductions of any species, which is of concern as they can have large effects on ecosystem dynamics and function.1-4 The jaguar (Panthera onca) is the apex predator throughout the majority of the Neotropics; however, its distribution has been reduced by >50% and it survives in increasingly isolated populations.5 Consequently, the range-wide management of the jaguar depends upon maintaining core populations connected through multi-national, transboundary cooperation, which requires understanding the movement ecology and space use of jaguars throughout their range.6-8 Using GPS telemetry data for 111 jaguars from 13 ecoregions within the four biomes that constitute the majority of jaguar habitat, we examined the landscape-level environmental and anthropogenic factors related to jaguar home range size and movement parameters. Home range size decreased with increasing net productivity and forest cover and increased with increasing road density. Speed decreased with increasing forest cover with no sexual differences, while males had more directional movements, but tortuosity in movements was not related to any landscape factors. We demonstrated a synergistic relationship between landscape-scale environmental and anthropogenic factors and jaguars' spatial needs, which has applications to the conservation strategy for the species throughout the Neotropics. Using large-scale collaboration, we overcame limitations from small sample sizes typical in large carnivore research to provide a mechanism to evaluate habitat quality for jaguars and an inferential modeling framework adaptable to the conservation of other large terrestrial carnivores.
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Affiliation(s)
- Jeffrey J Thompson
- Asociación Guyra Paraguay and CONACYT, Parque Ecológico Asunción Verde, Asunción, Paraguay; Insituto Saite, Asunción, Paraguay.
| | - Ronaldo G Morato
- Centro Nacional de Pesquisa e Conservação de Mamíferos Carnívoros, Instituto Chico Mendes de Conservação da Biodiversidade, Atibaia, SP 12952011, Brazil
| | - Bernardo B Niebuhr
- Centro Nacional de Pesquisa e Conservação de Mamíferos Carnívoros, Instituto Chico Mendes de Conservação da Biodiversidade, Atibaia, SP 12952011, Brazil; Instituto de Biociências, Universidade Estadual Paulista-UNESP, Departamento de Biodiversidade, Laboratório de Ecologia Espacial e Conservação LEEC, Rio Claro, SP 13506900, Brazil; Instituto Pró-Carnívoros, Atibaia, SP 12945010, Brazil; Department of Animal Nutrition and Management, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - Vanesa Bejarano Alegre
- Instituto de Biociências, Universidade Estadual Paulista-UNESP, Departamento de Biodiversidade, Laboratório de Ecologia Espacial e Conservação LEEC, Rio Claro, SP 13506900, Brazil
| | - Júlia Emi F Oshima
- Instituto de Biociências, Universidade Estadual Paulista-UNESP, Departamento de Biodiversidade, Laboratório de Ecologia Espacial e Conservação LEEC, Rio Claro, SP 13506900, Brazil
| | - Alan E de Barros
- Instituto de Biociências, Departamento de Ecologia, Universidade de São Paulo, Rua do Matão, Trav. 14, no. 321, Cidade Universitária, São Paulo, SP 05508-090, Brazil
| | - Agustín Paviolo
- Instituto de Biología Subtropical, Universidad Nacional de Misiones and CONICET, Puerto Iguazú, Misiones 3370, Argentina; Asociación Civil Centro de Investigaciones del Bosque Atlántico, Puerto Iguazú, Misiones 3370, Argentina
| | - J Antonio de la Torre
- Programa Jaguares de la Selva Maya, Bioconciencia A.C., Ciudad de México, México; School of Environmental and Geographical Sciences, University of Nottingham Malaysia, Jalan Broga, 43500 Semenyih, Selangor, Malaysia
| | - Fernando Lima
- Instituto de Biociências, Universidade Estadual Paulista-UNESP, Departamento de Biodiversidade, Laboratório de Ecologia Espacial e Conservação LEEC, Rio Claro, SP 13506900, Brazil; IPÊ-Instituto de Pesquisas Ecológicas, Nazaré Paulista, SP 12960000, Brazil
| | - Roy T McBride
- Faro Moro Eco Research, Estancia Faro Moro, Departamento de Boquerón, Paraguay
| | - Rogerio Cunha de Paula
- Centro Nacional de Pesquisa e Conservação de Mamíferos Carnívoros, Instituto Chico Mendes de Conservação da Biodiversidade, Atibaia, SP 12952011, Brazil
| | - Laury Cullen
- IPÊ-Instituto de Pesquisas Ecológicas, Nazaré Paulista, SP 12960000, Brazil
| | | | - Daniel L Z Kantek
- Estacao Ecológica Taiamã, Instituto Chico Mendes de Conservação da Biodiversidade, Cáceres, MT 78210625, Brazil
| | - Emiliano E Ramalho
- Instituto Pró-Carnívoros, Atibaia, SP 12945010, Brazil; Instituto de Desenvolvimento Sustentável Mamirauá, Tefé, AM 69553225, Brazil
| | - Louise Maranhão
- Instituto de Desenvolvimento Sustentável Mamirauá, Tefé, AM 69553225, Brazil
| | - Mario Haberfeld
- Associação Onçafari, Rua Ferreira de Araújo, 221, Cj.14, Sala 4, Pinheiros, São Paulo, SP 05428-000, Brazil; Panthera, 8 West 40th Street, 18th Floor, New York, NY 10018, USA; Instituto SOS Pantanal, R. Gutemberg, 328 Centro, Campo Grande, MS 79002-160, Brazil
| | - Denis A Sana
- Instituto Pró-Carnívoros, Atibaia, SP 12945010, Brazil; Programa de Pós-graduação em Biologia Animal, Instituto de Biociências, Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, RS 91501970, Brazil
| | - Rodrigo A Medellin
- Instituto de Ecología, Universidad Nacional Autónoma de México and CONACyT, Ciudad Universitaria, México D.F. 04318, México
| | - Eduardo Carrillo
- Instituto Internacional en Conservación y Manejo de Vida Silvestre, Universidad Nacional de Costa Rica, Heredia 1350-3000, Costa Rica
| | - Victor H Montalvo
- Instituto Internacional en Conservación y Manejo de Vida Silvestre, Universidad Nacional de Costa Rica, Heredia 1350-3000, Costa Rica; Department of Environmental Conservation, University of Massachusetts, Amherst, Amherst, MA 01003, USA
| | - Octavio Monroy-Vilchis
- Centro de Investigación en Ciencias Biológicas Aplicadas, Universidad Autónoma del Estado de México, Instituto Literario 100, Col. Centro C.P. 50000, Toluca, Estado de México
| | - Paula Cruz
- Instituto de Biología Subtropical, Universidad Nacional de Misiones and CONICET, Puerto Iguazú, Misiones 3370, Argentina; Asociación Civil Centro de Investigaciones del Bosque Atlántico, Puerto Iguazú, Misiones 3370, Argentina
| | | | - Giselle B Alves
- Instituto Onça Pintada, Mineiros, GO 75830000, Brazil; Instituto de Biologia, Laboratório de Ecologia de Mamíferos LEMA, Universidade Federal de Uberlândia, Uberlândia, MG 38408100, Brazil
| | | | - Ron Thompson
- Primero Conservation, Box 1588, Pinetop, AZ 85935, USA
| | - Carolina Sáenz-Bolaños
- Instituto Internacional en Conservación y Manejo de Vida Silvestre, Universidad Nacional de Costa Rica, Heredia 1350-3000, Costa Rica; Department of Environmental Conservation, University of Massachusetts, Amherst, Amherst, MA 01003, USA
| | - Juan Carlos Cruz
- Department of Environmental Conservation, University of Massachusetts, Amherst, Amherst, MA 01003, USA; Namá Conservation, Heredia 40101, Costa Rica
| | - Luis D Alfaro
- Instituto Internacional en Conservación y Manejo de Vida Silvestre, Universidad Nacional de Costa Rica, Heredia 1350-3000, Costa Rica
| | - Isabel Hagnauer
- Rescate Animal Zooave, Fundación Restauración de la Naturaleza, Apdo 1327-4050, Alajuela, Costa Rica
| | | | - Alexandre Vogliotti
- Universidade Federal da Integração Latino-Americana, Instituto Latino-Americano de Ciências da Vida e da Natureza, Foz do Iguaçu, PR 85851970, Brazil
| | | | - Selma S Miyazaki
- Estacao Ecológica Taiamã, Instituto Chico Mendes de Conservação da Biodiversidade, Cáceres, MT 78210625, Brazil
| | - Gediendson R Araujo
- Universidade Federal de Mato Grosso do Sul, Faculdade de Medicina Veterinária e Zootecnia, Campo Grande, MS 79070-900, Brasil; Instituto Onças do Rio Negro, Fazenda Barranco Alto, Aquidauana, MS 79208000, Brazil
| | - Leanes Cruz da Silva
- Instituto Onças do Rio Negro, Fazenda Barranco Alto, Aquidauana, MS 79208000, Brazil; Departamento de Medicina Veterinária, Universidade Federal de Viçosa, Viçosa, MG 36570, Brazil
| | - Lucas Leuzinger
- Instituto Onças do Rio Negro, Fazenda Barranco Alto, Aquidauana, MS 79208000, Brazil
| | - Marina M Carvalho
- Instituto de Defesa e Preservação dos Felídeos Brasileiros, Corumbá de Goiás, GO 72960000, Brazil
| | - Lilian Rampim
- Associação Onçafari, Rua Ferreira de Araújo, 221, Cj.14, Sala 4, Pinheiros, São Paulo, SP 05428-000, Brazil
| | - Leonardo Sartorello
- Associação Onçafari, Rua Ferreira de Araújo, 221, Cj.14, Sala 4, Pinheiros, São Paulo, SP 05428-000, Brazil
| | - Howard Quigley
- Panthera, 8 West 40th Street, 18th Floor, New York, NY 10018, USA
| | | | | | - Peter G Crawshaw
- Centro Nacional de Pesquisa e Conservação de Mamíferos Carnívoros, Instituto Chico Mendes de Conservação da Biodiversidade, Atibaia, SP 12952011, Brazil
| | - Allison L Devlin
- Panthera, 8 West 40th Street, 18th Floor, New York, NY 10018, USA; SUNY College of Environmental Science & Forestry, Syracuse, NY 13210, USA; Wildlife Biology Program, W.A. Franke College of Forestry & Conservation, University of Montana, Missoula, MT 59812, USA
| | - Joares A May Júnior
- Instituto Pró-Carnívoros, Atibaia, SP 12945010, Brazil; Associação Onçafari, Rua Ferreira de Araújo, 221, Cj.14, Sala 4, Pinheiros, São Paulo, SP 05428-000, Brazil; Panthera, 8 West 40th Street, 18th Floor, New York, NY 10018, USA; Universidade do Sul de Santa Catarina, Tubarão, SC 88704-900, Brazil
| | - George V N Powell
- Wildlife Protection Solutions, 2501 Welton Street, Denver, CO 80205, USA
| | - Mathias W Tobler
- San Diego Zoo Global, Institute for Conservation Research, 15600 San Pasqual Valley Road, Escondido, CA 92027, USA
| | - Samia E Carrillo-Percastegui
- San Diego Zoo Global, Institute for Conservation Research, 15600 San Pasqual Valley Road, Escondido, CA 92027, USA
| | - Estebán Payán
- Panthera, 8 West 40th Street, 18th Floor, New York, NY 10018, USA
| | - Fernando C C Azevedo
- Instituto Pró-Carnívoros, Atibaia, SP 12945010, Brazil; Universidade Federal de São João del Rei, Departamento de Ciências Naturais, São João del Rei, MG 36301160, Brazil
| | - Henrique V B Concone
- Instituto Pró-Carnívoros, Atibaia, SP 12945010, Brazil; Laboratório de Ecologia, Manejo e Conservação de Fauna Silvestre, Programa de Pós-Graduação Interunidades em Ecologia Aplicada, Universidade de São Paulo ESALQ/CENA, Piracicaba, SP 13418-900, Brazil
| | - Verónica A Quiroga
- Asociación Civil Centro de Investigaciones del Bosque Atlántico, Puerto Iguazú, Misiones 3370, Argentina; Universidad Nacional de Córdoba, Facultad de Ciencias Exactas, Físicas y Naturales, Centro de Zoología Aplicada, Córdoba, Argentina; Consejo Nacional de Investigaciones Científicas y Técnicas CONICET, Instituto de Diversidad y Ecología Animal IDEA, Córdoba, Argentina
| | - Sebastián A Costa
- Instituto de Biología Subtropical, Universidad Nacional de Misiones and CONICET, Puerto Iguazú, Misiones 3370, Argentina; Asociación Civil Centro de Investigaciones del Bosque Atlántico, Puerto Iguazú, Misiones 3370, Argentina
| | - Juan P Arrabal
- Asociación Civil Centro de Investigaciones del Bosque Atlántico, Puerto Iguazú, Misiones 3370, Argentina; Instituto Nacional de Medicina Tropical ANLIS, Ministerio de Salud de la Nación, Puerto Iguazú, Misiones 3370, Argentina
| | - Ezequiel Vanderhoeven
- Asociación Civil Centro de Investigaciones del Bosque Atlántico, Puerto Iguazú, Misiones 3370, Argentina; Instituto Nacional de Medicina Tropical ANLIS, Ministerio de Salud de la Nación, Puerto Iguazú, Misiones 3370, Argentina
| | - Yamil E Di Blanco
- Instituto de Biología Subtropical, Universidad Nacional de Misiones and CONICET, Puerto Iguazú, Misiones 3370, Argentina; Asociación Civil Centro de Investigaciones del Bosque Atlántico, Puerto Iguazú, Misiones 3370, Argentina
| | - Alexandre M C Lopes
- Instituto de Pesquisa e Conservação de Tamanduás do Brasil, Parnaíba, PI 64200025, Brazil
| | - Milton Cezar Ribeiro
- Instituto de Biociências, Universidade Estadual Paulista-UNESP, Departamento de Biodiversidade, Laboratório de Ecologia Espacial e Conservação LEEC, Rio Claro, SP 13506900, Brazil
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Duľa M, Bojda M, Chabanne DBH, Drengubiak P, Hrdý Ľ, Krojerová-Prokešová J, Kubala J, Labuda J, Marčáková L, Oliveira T, Smolko P, Váňa M, Kutal M. Multi-seasonal systematic camera-trapping reveals fluctuating densities and high turnover rates of Carpathian lynx on the western edge of its native range. Sci Rep 2021; 11:9236. [PMID: 33927232 PMCID: PMC8085240 DOI: 10.1038/s41598-021-88348-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Accepted: 04/09/2021] [Indexed: 11/09/2022] Open
Abstract
Camera-trapping and capture-recapture models are the most widely used tools for estimating densities of wild felids that have unique coat patterns, such as Eurasian lynx. However, studies dealing with this species are predominantly on a short-term basis and our knowledge of temporal trends and population persistence is still scarce. By using systematic camera-trapping and spatial capture-recapture models, we estimated lynx densities and evaluated density fluctuations, apparent survival, transition rate and individual's turnover during five consecutive seasons at three different sites situated in the Czech-Slovak-Polish borderland at the periphery of the Western Carpathians. Our density estimates vary between 0.26 and 1.85 lynx/100 km2 suitable habitat and represent the lowest and the highest lynx densities reported from the Carpathians. We recorded 1.5-4.1-fold changes in asynchronous fluctuated densities among all study sites and seasons. Furthermore, we detected high individual's turnover (on average 46.3 ± 8.06% in all independent lynx and 37.6 ± 4.22% in adults) as well as low persistence of adults (only 3 out of 29 individuals detected in all seasons). The overall apparent survival rate was 0.63 ± 0.055 and overall transition rate between sites was 0.03 ± 0.019. Transition rate of males was significantly higher than in females, suggesting male-biased dispersal and female philopatry. Fluctuating densities and high turnover rates, in combination with documented lynx mortality, indicate that the population in our region faces several human-induced mortalities, such as poaching or lynx-vehicle collisions. These factors might restrict population growth and limit the dispersion of lynx to other subsequent areas, thus undermining the favourable conservation status of the Carpathian population. Moreover, our study demonstrates that long-term camera-trapping surveys are needed for evaluation of population trends and for reliable estimates of demographic parameters of wild territorial felids, and can be further used for establishing successful management and conservation measures.
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Affiliation(s)
- Martin Duľa
- Department of Forest Ecology, Faculty of Forestry and Wood Technology, Mendel University in Brno, Zemědělská 1, 613 00, Brno, Czech Republic. .,Friends of the Earth Czech Republic, Olomouc Branch, Dolní náměstí 38, 779 00, Olomouc, Czech Republic.
| | - Michal Bojda
- Department of Forest Ecology, Faculty of Forestry and Wood Technology, Mendel University in Brno, Zemědělská 1, 613 00, Brno, Czech Republic.,Friends of the Earth Czech Republic, Olomouc Branch, Dolní náměstí 38, 779 00, Olomouc, Czech Republic
| | - Delphine B H Chabanne
- Centre for Sustainable Aquatic Ecosystems, Harry Butler Institute, Murdoch University, Murdoch, WA, Australia.,Evolutionary Genetics Group, Department of Anthropology, University of Zurich, Zurich, Switzerland
| | - Peter Drengubiak
- Kysuce Protected Landscape Area Administration, State Nature Conservancy of the Slovak Republic, U Tomali č. 1511, 022 01, Čadca, Slovakia
| | - Ľuboslav Hrdý
- Friends of the Earth Czech Republic, Olomouc Branch, Dolní náměstí 38, 779 00, Olomouc, Czech Republic
| | - Jarmila Krojerová-Prokešová
- Institute of Vertebrate Biology of the Czech Academy of Sciences, Květná 8, 603 65, Brno, Czech Republic.,Department of Zoology, Fisheries, Hydrobiology and Apiculture, Faculty of AgriSciences, Mendel University in Brno, Zemědělská 1, 613 00, Brno, Czech Republic
| | - Jakub Kubala
- Department of Applied Zoology and Wildlife Management, Faculty of Forestry, Technical University in Zvolen, T. G. Masaryka 24, 960 01, Zvolen, Slovakia.,DIANA - Carpathian Wildlife Research, Mládežnícka 47, 974 04, Banská Bystrica, Slovakia
| | - Jiří Labuda
- Department of Forest Ecology, Faculty of Forestry and Wood Technology, Mendel University in Brno, Zemědělská 1, 613 00, Brno, Czech Republic.,Friends of the Earth Czech Republic, Olomouc Branch, Dolní náměstí 38, 779 00, Olomouc, Czech Republic
| | - Leona Marčáková
- Friends of the Earth Czech Republic, Olomouc Branch, Dolní náměstí 38, 779 00, Olomouc, Czech Republic
| | - Teresa Oliveira
- Department of Forestry and Renewable Forest Resources, Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, 1000, Ljubljana, Slovenia
| | - Peter Smolko
- Department of Applied Zoology and Wildlife Management, Faculty of Forestry, Technical University in Zvolen, T. G. Masaryka 24, 960 01, Zvolen, Slovakia.,DIANA - Carpathian Wildlife Research, Mládežnícka 47, 974 04, Banská Bystrica, Slovakia
| | - Martin Váňa
- Friends of the Earth Czech Republic, Olomouc Branch, Dolní náměstí 38, 779 00, Olomouc, Czech Republic
| | - Miroslav Kutal
- Department of Forest Ecology, Faculty of Forestry and Wood Technology, Mendel University in Brno, Zemědělská 1, 613 00, Brno, Czech Republic.,Friends of the Earth Czech Republic, Olomouc Branch, Dolní náměstí 38, 779 00, Olomouc, Czech Republic
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Hardouin M, Searle CE, Strampelli P, Smit J, Dickman A, Lobora AL, Rowcliffe JM. Density responses of lesser-studied carnivores to habitat and management strategies in southern Tanzania's Ruaha-Rungwa landscape. PLoS One 2021; 16:e0242293. [PMID: 33784297 PMCID: PMC8009394 DOI: 10.1371/journal.pone.0242293] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2020] [Accepted: 03/16/2021] [Indexed: 11/19/2022] Open
Abstract
Compared to emblematic large carnivores, most species of the order Carnivora receive little conservation attention despite increasing anthropogenic pressure and poor understanding of their status across much of their range. We employed systematic camera trapping and spatially explicit capture-recapture modelling to estimate variation in population density of serval, striped hyaena and aardwolf across the mixed-use Ruaha-Rungwa landscape in southern Tanzania. We selected three sites representative of different habitat types, management strategies, and levels of anthropogenic pressure: Ruaha National Park’s core tourist area, dominated by Acacia-Commiphora bushlands and thickets; the Park’s miombo woodland; and the neighbouring community-run MBOMIPA Wildlife Management Area, also covered in Acacia-Commiphora. The Park’s miombo woodlands supported a higher serval density (5.56 [Standard Error = ±2.45] individuals per 100 km2) than either the core tourist area (3.45 [±1.04] individuals per 100 km2) or the Wildlife Management Area (2.08 [±0.74] individuals per 100 km2). Taken together, precipitation, the abundance of apex predators, and the level of anthropogenic pressure likely drive such variation. Striped hyaena were detected only in the Wildlife Management Area and at low density (1.36 [±0.50] individuals per 100 km2), potentially due to the location of the surveyed sites at the edge of the species’ global range, high densities of sympatric competitors, and anthropogenic edge effects. Finally, aardwolf were captured in both the Park’s core tourist area and the Wildlife Management Area, with a higher density in the Wildlife Management Area (13.25 [±2.48] versus 9.19 [±1.66] individuals per 100 km2), possibly as a result of lower intraguild predation and late fire outbreaks in the area surveyed. By shedding light on three understudied African carnivore species, this study highlights the importance of miombo woodland conservation and community-managed conservation, as well as the value of by-catch camera trap data to improve ecological knowledge of lesser-studied carnivores.
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Affiliation(s)
- Marie Hardouin
- Faculty of Natural Sciences, Imperial College London, Ascot, United Kingdom
- * E-mail:
| | - Charlotte E. Searle
- Wildlife Conservation Research Unit, Department of Zoology, The Recanati-Kaplan Centre, Tubney, United Kingdom
| | - Paolo Strampelli
- Wildlife Conservation Research Unit, Department of Zoology, The Recanati-Kaplan Centre, Tubney, United Kingdom
| | - Josephine Smit
- Southern Tanzania Elephant Program, Iringa, Tanzania
- Department of Psychology, University of Stirling, Stirling, United Kingdom
| | - Amy Dickman
- Wildlife Conservation Research Unit, Department of Zoology, The Recanati-Kaplan Centre, Tubney, United Kingdom
| | | | - J. Marcus Rowcliffe
- Faculty of Natural Sciences, Imperial College London, Ascot, United Kingdom
- Institute of Zoology, Zoological Society of London, London, United Kingdom
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21
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Harmsen BJ, Saville N, Foster RJ. Long-term monitoring of margays (Leopardus wiedii): Implications for understanding low detection rates. PLoS One 2021; 16:e0247536. [PMID: 33647057 PMCID: PMC7920358 DOI: 10.1371/journal.pone.0247536] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2020] [Accepted: 02/08/2021] [Indexed: 11/19/2022] Open
Abstract
Population assessments of wide-ranging, cryptic, terrestrial mammals rely on camera trap surveys. While camera trapping is a powerful method of detecting presence, it is difficult distinguishing rarity from low detection rate. The margay (Leopardus wiedii) is an example of a species considered rare based on its low detection rates across its range. Although margays have a wide distribution, detection rates with camera traps are universally low; consequently, the species is listed as Near Threatened. Our 12-year camera trap study of margays in protected broadleaf forest in Belize suggests that while margays have low detection rate, they do not seem to be rare, rather that they are difficult to detect with camera traps. We detected a maximum of 187 individuals, all with few or no recaptures over the years (mean = 2.0 captures/individual ± SD 2.1), with two-thirds of individuals detected only once. The few individuals that were recaptured across years exhibited long tenures up to 9 years and were at least 10 years old at their final detection. We detected multiple individuals of both sexes at the same locations during the same survey, suggesting overlapping ranges with non-exclusive territories, providing further evidence of a high-density population. By studying the sparse annual datasets across multiple years, we found evidence of an abundant margay population in the forest of the Cockscomb Basin, which might have been deemed low density and rare, if studied in the short term. We encourage more long-term camera trap studies to assess population status of semi-arboreal carnivore species that have hitherto been considered rare based on low detection rates.
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Affiliation(s)
- Bart J. Harmsen
- Panthera, New York, New York, United States of America
- Environmental Research Institute, University of Belize, Belmopan, Belize
- * E-mail:
| | - Nicola Saville
- Panthera, New York, New York, United States of America
- Environmental Research Institute, University of Belize, Belmopan, Belize
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Foster RJ, Harmsen BJ, Urbina YL, Wooldridge RL, Doncaster CP, Quigley H, Figueroa OA. Jaguar ( Panthera onca) density and tenure in a critical biological corridor. J Mammal 2020; 101:1622-1637. [PMID: 33505226 PMCID: PMC7816682 DOI: 10.1093/jmammal/gyaa134] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2019] [Accepted: 10/02/2020] [Indexed: 11/26/2022] Open
Abstract
We estimated jaguar density and tenure, and investigated ranging behavior, using camera traps across the Maya Forest Corridor, a human-influenced landscape in central Belize that forms the only remaining connection for jaguar populations inhabiting two regional forest blocks: the Selva Maya and the Maya Mountain Massif. Jaguars were ubiquitous across the study area. Similar to the neighboring Selva Maya, mean density ranged from 1.5 to 3.1 jaguars per 100 km2, estimated by spatial capture-recapture models. Cameras detected almost twice as many males as females, probably reflecting detection bias, and males ranged more widely than females within the camera grid. Both sexes crossed two major rivers, while highway crossings were rare and male-biased, raising concern that the highway could prevent female movement if traffic increases. Jaguars were more transient where the landscape was fragmented with settlements and agriculture than in contiguous forest. Compared with jaguars in the protected forests of the Maya Mountains, jaguars in central Belize displayed a lower potential for investment in intraspecific communication, indicative of a lower quality landscape; however, we did detect mating behavior and juveniles. Tenure of individuals was shorter than in the protected forests, with a higher turnover rate for males than females. At least three-quarters of reported jaguar deaths caused by people were male jaguars, and the majority was retaliation for livestock predation. Jaguars seem relatively tolerant to the human-influenced landscape of central Belize. However, intensification of game hunting and lethal control of predators would threaten population persistence, while increased highway traffic and clear-cutting riparian forest would severely limit the corridor function. Our results show that the viability of the corridor, and thus the long-term survival of jaguar populations in this region, will depend on appropriate land-use planning, nonlethal control of livestock predators, enforcement of game hunting regulations, and wildlife-friendly features in future road developments.
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Affiliation(s)
- R J Foster
- Panthera, New York, NY, USA
- School of Biological Sciences, University of Southampton, Southampton, United Kingdom
- Environmental Research Institute, University of Belize, Belmopan, Belize
| | - B J Harmsen
- Panthera, New York, NY, USA
- School of Biological Sciences, University of Southampton, Southampton, United Kingdom
- Environmental Research Institute, University of Belize, Belmopan, Belize
- Government of Belize, Market Square, Belmopan, Belize
| | - Y L Urbina
- Panthera, New York, NY, USA
- Environmental Research Institute, University of Belize, Belmopan, Belize
| | - R L Wooldridge
- Panthera, New York, NY, USA
- Environmental Research Institute, University of Belize, Belmopan, Belize
| | - C P Doncaster
- School of Biological Sciences, University of Southampton, Southampton, United Kingdom
| | | | - O A Figueroa
- Government of Belize, Market Square, Belmopan, Belize
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