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For: Charlesworth B. The role of background selection in shaping patterns of molecular evolution and variation: evidence from variability on the Drosophila X chromosome. Genetics 2012;191:233-46. [PMID: 22377629 DOI: 10.1534/genetics.111.138073] [Citation(s) in RCA: 94] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
Number Cited by Other Article(s)
1
Amin MR, Hasan M, DeGiorgio M. Digital Image Processing to Detect Adaptive Evolution. Mol Biol Evol 2024;41:msae242. [PMID: 39565932 PMCID: PMC11631197 DOI: 10.1093/molbev/msae242] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2024] [Revised: 10/28/2024] [Accepted: 11/13/2024] [Indexed: 11/22/2024]  Open
2
Gering E, Johnsson M, Theunissen D, Martin Cerezo ML, Steep A, Getty T, Henriksen R, Wright D. Signals of selection and ancestry in independently feral Gallus gallus populations. Mol Ecol 2024;33:e17336. [PMID: 38553993 DOI: 10.1111/mec.17336] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Revised: 03/15/2024] [Accepted: 03/20/2024] [Indexed: 10/18/2024]
3
Yazdi HP, Olito C, Kawakami T, Unneberg P, Schou MF, Cloete SWP, Hansson B, Cornwallis CK. The evolutionary maintenance of ancient recombining sex chromosomes in the ostrich. PLoS Genet 2023;19:e1010801. [PMID: 37390104 DOI: 10.1371/journal.pgen.1010801] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Accepted: 05/28/2023] [Indexed: 07/02/2023]  Open
4
Harris M, Garud NR. Enrichment of Hard Sweeps on the X Chromosome in Drosophila melanogaster. Mol Biol Evol 2022;40:6955808. [PMID: 36546413 PMCID: PMC9825254 DOI: 10.1093/molbev/msac268] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Revised: 11/11/2022] [Accepted: 12/05/2022] [Indexed: 12/24/2022]  Open
5
Parker DJ, Jaron KS, Dumas Z, Robinson‐Rechavi M, Schwander T. X chromosomes show relaxed selection and complete somatic dosage compensation across Timema stick insect species. J Evol Biol 2022;35:1734-1750. [PMID: 35933721 PMCID: PMC10087215 DOI: 10.1111/jeb.14075] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2022] [Revised: 05/06/2022] [Accepted: 07/14/2022] [Indexed: 11/29/2022]
6
Charlesworth B, Jensen JD. How Can We Resolve Lewontin's Paradox? Genome Biol Evol 2022;14:evac096. [PMID: 35738021 PMCID: PMC9305300 DOI: 10.1093/gbe/evac096] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/16/2022] [Indexed: 02/07/2023]  Open
7
DeGiorgio M, Szpiech ZA. A spatially aware likelihood test to detect sweeps from haplotype distributions. PLoS Genet 2022;18:e1010134. [PMID: 35404934 PMCID: PMC9022890 DOI: 10.1371/journal.pgen.1010134] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2021] [Revised: 04/21/2022] [Accepted: 03/04/2022] [Indexed: 01/13/2023]  Open
8
Bendall EE, Bagley RK, Sousa VC, Linnen CR. Faster-haplodiploid evolution under divergence-with-gene-flow: simulations and empirical data from pine-feeding hymenopterans. Mol Ecol 2022;31:2348-2366. [PMID: 35231148 DOI: 10.1111/mec.16410] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2021] [Revised: 02/10/2022] [Accepted: 02/21/2022] [Indexed: 11/28/2022]
9
Shared evolutionary trajectories of three independent neo-sex chromosomes in Drosophila. Genome Res 2021;31:2069-2079. [PMID: 34675069 PMCID: PMC8559708 DOI: 10.1101/gr.275503.121] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2021] [Accepted: 07/22/2021] [Indexed: 11/25/2022]
10
Boman J, Mugal CF, Backström N. The Effects of GC-Biased Gene Conversion on Patterns of Genetic Diversity among and across Butterfly Genomes. Genome Biol Evol 2021;13:evab064. [PMID: 33760095 PMCID: PMC8175052 DOI: 10.1093/gbe/evab064] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/22/2021] [Indexed: 12/28/2022]  Open
11
Hayes K, Barton HJ, Zeng K. A Study of Faster-Z Evolution in the Great Tit (Parus major). Genome Biol Evol 2021;12:210-222. [PMID: 32119100 PMCID: PMC7144363 DOI: 10.1093/gbe/evaa044] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/26/2020] [Indexed: 12/17/2022]  Open
12
Population Genomics on the Fly: Recent Advances in Drosophila. Methods Mol Biol 2021;2090:357-396. [PMID: 31975175 DOI: 10.1007/978-1-0716-0199-0_15] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
13
Charlesworth B. How Good Are Predictions of the Effects of Selective Sweeps on Levels of Neutral Diversity? Genetics 2020;216:1217-1238. [PMID: 33106248 PMCID: PMC7768247 DOI: 10.1534/genetics.120.303734] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2020] [Accepted: 10/22/2020] [Indexed: 11/18/2022]  Open
14
The Impact of Recessive Deleterious Variation on Signals of Adaptive Introgression in Human Populations. Genetics 2020;215:799-812. [PMID: 32487519 PMCID: PMC7337073 DOI: 10.1534/genetics.120.303081] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2020] [Accepted: 05/01/2020] [Indexed: 12/19/2022]  Open
15
The Temporal Dynamics of Background Selection in Nonequilibrium Populations. Genetics 2020;214:1019-1030. [PMID: 32071195 DOI: 10.1534/genetics.119.302892] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2019] [Accepted: 01/30/2020] [Indexed: 01/06/2023]  Open
16
Bhati M, Kadri NK, Crysnanto D, Pausch H. Assessing genomic diversity and signatures of selection in Original Braunvieh cattle using whole-genome sequencing data. BMC Genomics 2020;21:27. [PMID: 31914939 PMCID: PMC6950892 DOI: 10.1186/s12864-020-6446-y] [Citation(s) in RCA: 39] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2019] [Accepted: 12/31/2019] [Indexed: 02/07/2023]  Open
17
Matthey‐Doret R, Whitlock MC. Background selection andFST: Consequences for detecting local adaptation. Mol Ecol 2019;28:3902-3914. [DOI: 10.1111/mec.15197] [Citation(s) in RCA: 51] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2018] [Revised: 06/19/2019] [Accepted: 07/03/2019] [Indexed: 01/03/2023]
18
Booker TR, Keightley PD. Understanding the Factors That Shape Patterns of Nucleotide Diversity in the House Mouse Genome. Mol Biol Evol 2019;35:2971-2988. [PMID: 30295866 PMCID: PMC6278861 DOI: 10.1093/molbev/msy188] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
19
Zeng K, Jackson BC, Barton HJ. Methods for Estimating Demography and Detecting Between-Locus Differences in the Effective Population Size and Mutation Rate. Mol Biol Evol 2019;36:423-433. [PMID: 30428070 PMCID: PMC6409433 DOI: 10.1093/molbev/msy212] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
20
Ryman N, Laikre L, Hössjer O. Do estimates of contemporary effective population size tell us what we want to know? Mol Ecol 2019;28:1904-1918. [PMID: 30663828 PMCID: PMC6850010 DOI: 10.1111/mec.15027] [Citation(s) in RCA: 56] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2018] [Revised: 01/14/2019] [Accepted: 01/15/2019] [Indexed: 12/25/2022]
21
The Effects on Neutral Variability of Recurrent Selective Sweeps and Background Selection. Genetics 2019;212:287-303. [PMID: 30923166 DOI: 10.1534/genetics.119.301951] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2019] [Accepted: 03/19/2019] [Indexed: 12/11/2022]  Open
22
Pinharanda A, Rousselle M, Martin SH, Hanly JJ, Davey JW, Kumar S, Galtier N, Jiggins CD. Sexually dimorphic gene expression and transcriptome evolution provide mixed evidence for a fast-Z effect in Heliconius. J Evol Biol 2019;32:194-204. [PMID: 30523653 PMCID: PMC6850379 DOI: 10.1111/jeb.13410] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2018] [Revised: 11/06/2018] [Accepted: 11/27/2018] [Indexed: 12/30/2022]
23
Chen ZH, Zhang M, Lv FH, Ren X, Li WR, Liu MJ, Nam K, Bruford MW, Li MH. Contrasting Patterns of Genomic Diversity Reveal Accelerated Genetic Drift but Reduced Directional Selection on X-Chromosome in Wild and Domestic Sheep Species. Genome Biol Evol 2018;10:1282-1297. [PMID: 29790980 PMCID: PMC5963296 DOI: 10.1093/gbe/evy085] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/19/2018] [Indexed: 01/08/2023]  Open
24
Kono TJY, Lei L, Shih CH, Hoffman PJ, Morrell PL, Fay JC. Comparative Genomics Approaches Accurately Predict Deleterious Variants in Plants. G3 (BETHESDA, MD.) 2018;8:3321-3329. [PMID: 30139765 PMCID: PMC6169392 DOI: 10.1534/g3.118.200563] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/08/2018] [Accepted: 08/10/2018] [Indexed: 12/11/2022]
25
Presgraves DC. Evaluating genomic signatures of "the large X-effect" during complex speciation. Mol Ecol 2018;27:3822-3830. [PMID: 29940087 PMCID: PMC6705125 DOI: 10.1111/mec.14777] [Citation(s) in RCA: 74] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2018] [Revised: 05/31/2018] [Accepted: 06/07/2018] [Indexed: 12/16/2022]
26
Support for the Dominance Theory in Drosophila Transcriptomes. Genetics 2018;210:703-718. [PMID: 30131345 PMCID: PMC6216581 DOI: 10.1534/genetics.118.301229] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2018] [Accepted: 08/10/2018] [Indexed: 12/14/2022]  Open
27
Gaut BS, Seymour DK, Liu Q, Zhou Y. Demography and its effects on genomic variation in crop domestication. NATURE PLANTS 2018;4:512-520. [PMID: 30061748 DOI: 10.1038/s41477-018-0210-1] [Citation(s) in RCA: 132] [Impact Index Per Article: 18.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2018] [Revised: 06/13/2018] [Accepted: 06/27/2018] [Indexed: 05/20/2023]
28
Alachiotis N, Pavlidis P. RAiSD detects positive selection based on multiple signatures of a selective sweep and SNP vectors. Commun Biol 2018;1:79. [PMID: 30271960 PMCID: PMC6123745 DOI: 10.1038/s42003-018-0085-8] [Citation(s) in RCA: 79] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2017] [Accepted: 06/05/2018] [Indexed: 12/16/2022]  Open
29
Comeron JM. Background selection as null hypothesis in population genomics: insights and challenges from Drosophila studies. Philos Trans R Soc Lond B Biol Sci 2018;372:rstb.2016.0471. [PMID: 29109230 PMCID: PMC5698629 DOI: 10.1098/rstb.2016.0471] [Citation(s) in RCA: 73] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/04/2017] [Indexed: 12/11/2022]  Open
30
Llopart A. Faster‐X evolution of gene expression is driven by recessive adaptive cis ‐regulatory variation in Drosophila. Mol Ecol 2018;27:3811-3821. [DOI: 10.1111/mec.14708] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2017] [Revised: 03/28/2018] [Accepted: 04/05/2018] [Indexed: 12/30/2022]
31
A Comparison of Selective Pressures in Plant X-Linked and Autosomal Genes. Genes (Basel) 2018;9:genes9050234. [PMID: 29751495 PMCID: PMC5977174 DOI: 10.3390/genes9050234] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2018] [Revised: 04/23/2018] [Accepted: 04/26/2018] [Indexed: 01/30/2023]  Open
32
Van Belleghem SM, Baquero M, Papa R, Salazar C, McMillan WO, Counterman BA, Jiggins CD, Martin SH. Patterns of Z chromosome divergence among Heliconius species highlight the importance of historical demography. Mol Ecol 2018;27:3852-3872. [PMID: 29569384 PMCID: PMC6151167 DOI: 10.1111/mec.14560] [Citation(s) in RCA: 43] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2017] [Revised: 02/14/2018] [Accepted: 02/20/2018] [Indexed: 12/31/2022]
33
Delmore KE, Lugo Ramos JS, Van Doren BM, Lundberg M, Bensch S, Irwin DE, Liedvogel M. Comparative analysis examining patterns of genomic differentiation across multiple episodes of population divergence in birds. Evol Lett 2018;2:76-87. [PMID: 30283666 PMCID: PMC6121856 DOI: 10.1002/evl3.46] [Citation(s) in RCA: 42] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2017] [Revised: 02/09/2018] [Accepted: 02/12/2018] [Indexed: 12/14/2022]  Open
34
Charlesworth B, Campos JL, Jackson BC. Faster-X evolution: Theory and evidence from Drosophila. Mol Ecol 2018;27:3753-3771. [PMID: 29431881 DOI: 10.1111/mec.14534] [Citation(s) in RCA: 68] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2017] [Revised: 01/31/2018] [Accepted: 02/06/2018] [Indexed: 12/13/2022]
35
Detecting positive selection in the genome. BMC Biol 2017;15:98. [PMID: 29084517 PMCID: PMC5662103 DOI: 10.1186/s12915-017-0434-y] [Citation(s) in RCA: 74] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]  Open
36
Jackson BC, Campos JL, Haddrill PR, Charlesworth B, Zeng K. Variation in the Intensity of Selection on Codon Bias over Time Causes Contrasting Patterns of Base Composition Evolution in Drosophila. Genome Biol Evol 2017;9:102-123. [PMID: 28082609 PMCID: PMC5381600 DOI: 10.1093/gbe/evw291] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/07/2016] [Indexed: 12/11/2022]  Open
37
Schou MF, Loeschcke V, Bechsgaard J, Schlötterer C, Kristensen TN. Unexpected high genetic diversity in small populations suggests maintenance by associative overdominance. Mol Ecol 2017;26:6510-6523. [PMID: 28746770 DOI: 10.1111/mec.14262] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2017] [Revised: 06/23/2017] [Accepted: 06/28/2017] [Indexed: 12/17/2022]
38
Ravinet M, Faria R, Butlin RK, Galindo J, Bierne N, Rafajlović M, Noor MAF, Mehlig B, Westram AM. Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow. J Evol Biol 2017;30:1450-1477. [DOI: 10.1111/jeb.13047] [Citation(s) in RCA: 306] [Impact Index Per Article: 38.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2016] [Revised: 01/31/2017] [Accepted: 02/01/2017] [Indexed: 12/14/2022]
39
Samuk K, Owens GL, Delmore KE, Miller SE, Rennison DJ, Schluter D. Gene flow and selection interact to promote adaptive divergence in regions of low recombination. Mol Ecol 2017;26:4378-4390. [DOI: 10.1111/mec.14226] [Citation(s) in RCA: 101] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2017] [Revised: 06/02/2017] [Accepted: 06/13/2017] [Indexed: 12/11/2022]
40
Estimating the parameters of background selection and selective sweeps in Drosophila in the presence of gene conversion. Proc Natl Acad Sci U S A 2017;114:E4762-E4771. [PMID: 28559322 DOI: 10.1073/pnas.1619434114] [Citation(s) in RCA: 42] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]  Open
41
Lasne C, Sgrò CM, Connallon T. The Relative Contributions of the X Chromosome and Autosomes to Local Adaptation. Genetics 2017;205:1285-1304. [PMID: 28064164 PMCID: PMC5340339 DOI: 10.1534/genetics.116.194670] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2016] [Accepted: 12/25/2016] [Indexed: 01/07/2023]  Open
42
Bagley RK, Sousa VC, Niemiller ML, Linnen CR. History, geography and host use shape genomewide patterns of genetic variation in the redheaded pine sawfly ( Neodiprion lecontei ). Mol Ecol 2017;26:1022-1044. [DOI: 10.1111/mec.13972] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2015] [Revised: 11/10/2016] [Accepted: 12/01/2016] [Indexed: 01/03/2023]
43
Charlesworth et al. on Background Selection and Neutral Diversity. Genetics 2017;204:829-832. [PMID: 28114095 DOI: 10.1534/genetics.116.196170] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
44
Pinharanda A, Martin SH, Barker SL, Davey JW, Jiggins CD. The comparative landscape of duplications in Heliconius melpomene and Heliconius cydno. Heredity (Edinb) 2017;118:78-87. [PMID: 27925618 PMCID: PMC5176112 DOI: 10.1038/hdy.2016.107] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2016] [Revised: 08/24/2016] [Accepted: 08/25/2016] [Indexed: 01/01/2023]  Open
45
Accelerated pseudogenization on the neo-X chromosome in Drosophila miranda. Nat Commun 2016;7:13659. [PMID: 27897175 PMCID: PMC5141340 DOI: 10.1038/ncomms13659] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2016] [Accepted: 10/20/2016] [Indexed: 12/22/2022]  Open
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Rousselle M, Faivre N, Ballenghien M, Galtier N, Nabholz B. Hemizygosity Enhances Purifying Selection: Lack of Fast-Z Evolution in Two Satyrine Butterflies. Genome Biol Evol 2016;8:3108-3119. [PMID: 27590089 PMCID: PMC5174731 DOI: 10.1093/gbe/evw214] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
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Estimating the Effective Population Size from Temporal Allele Frequency Changes in Experimental Evolution. Genetics 2016;204:723-735. [PMID: 27542959 PMCID: PMC5068858 DOI: 10.1534/genetics.116.191197] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2016] [Accepted: 07/30/2016] [Indexed: 01/22/2023]  Open
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Phung TN, Huber CD, Lohmueller KE. Determining the Effect of Natural Selection on Linked Neutral Divergence across Species. PLoS Genet 2016;12:e1006199. [PMID: 27508305 PMCID: PMC4980041 DOI: 10.1371/journal.pgen.1006199] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2015] [Accepted: 06/25/2016] [Indexed: 11/18/2022]  Open
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Elyashiv E, Sattath S, Hu TT, Strutsovsky A, McVicker G, Andolfatto P, Coop G, Sella G. A Genomic Map of the Effects of Linked Selection in Drosophila. PLoS Genet 2016;12:e1006130. [PMID: 27536991 PMCID: PMC4990265 DOI: 10.1371/journal.pgen.1006130] [Citation(s) in RCA: 93] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2015] [Accepted: 05/26/2016] [Indexed: 01/23/2023]  Open
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Determinants of genetic diversity. Nat Rev Genet 2016;17:422-33. [PMID: 27265362 DOI: 10.1038/nrg.2016.58] [Citation(s) in RCA: 424] [Impact Index Per Article: 47.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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