Biofilm grazing in a higher vertebrate: the western sandpiper, Calidris mauri

Lengths of Stay and Stopover Strategies of Western Sandpipers During Migration at Two Sites in British Columbia, Canada

An accurate estimate of length of stay is necessary to derive passage population size for birds using a migration stopover site. In this study, we used VHF tags and a Motus automated telemetry array to estimate the length of stay of 385 Western Sandpipers (Calidris mauri) migrating through two stopover sites in British Columbia, Canada (Tofino and Fraser River Estuary) over the course of seven migration periods (three northward and four southward) from 2018 to 2021. The average length of stay of Western Sandpipers at the Tofino site on the west coast of Vancouver Island varied from 2 to 6 days and was shorter than the length of stay at the Fraser River Estuary, where the average length of stay varied from 4 to 8 days. At both sites, adult birds had shorter stopovers during southward migration, juvenile birds had longer stopovers compared to adults, and birds with lower mass at capture had longer stopovers. Morphology of adults and juveniles varied between the two sites. Birds captured at Tofino had shorter tarsi, as well as higher mass during southward migration compared to Western Sandpipers captured at the Fraser River Estuary. We also assessed prey availability at the two stopover sites, and we found that invertebrate density was greater in Tofino compared to the Fraser River Estuary during northward migration. Variation in minimum stopover length and morphology between sites suggests that individuals from different overwintering populations may use different routes along the west coast of North America. Western Sandpipers stopping at Tofino have a shorter length of stay during both migration periods and arrive heavier during southward migration, characteristics typical of "hop" migrants who travel shorter distances between stopover sites. Different stopover sites offer a unique set of site characteristics used by birds exhibiting varying migration strategies, highlighting the importance of conserving a diversity of migration stopover locations.

Bio-concentration of hazardous metals in migrant shorebirds in a key conservation reserve and adjoining areas on the west coast of India

Heavy metal pollution is a growing environmental concern as it causes the degradation of wetlands by affecting the organisms at different trophic levels. Shorebirds typically feed on benthic invertebrates including polychaete worms, crustaceans and molluscs. Thus, the assessment of bioconcentration of heavy metals in shorebirds provides an insight into the extent of bioaccumulation of these hazardous metals in the upper trophic levels. We studied the variation in the bioconcentration of hazardous heavy metals (chromium, lead and cadmium) in the faeces of 12 species of shorebirds (belonging to different foraging guilds including Endangered Great Knot, Vulnerable Grey Plover, Broad billed Sandpiper and Curlew Sandpiper and Near Threatened Eurasian Oystercatcher, Ruddy Turnstone and Dunlin) in relation to trends in their abundance over a period of five years (2019-2023). The study spanned over three different habitats (mudflats, mangroves and sand beaches) of Kadalundi Vallikkunnu Community Reserve (KVCR) and adjoining sand beaches, which are important wintering/ stop-over sites for the migrant shorebirds that provide abundant nutritional resources for the foraging shorebirds. We demonstrate that there has been a drastic increase in the heavy metal concentration in shorebird faeces from 2019 to 2023. Further, the findings indicate that predating and biofilm-grazing shorebirds in mangrove habitats, as well as small-bodied shorebirds in general are exposed to high levels of heavy metals. This study highlights that heavy metals in the coastal habitats are increasing and that there are potential risks from exposure to foraging shorebirds. Heavy metals have known adverse effects on shorebirds. Our study shows that reducing pollution and protecting community reserves alongside their surrounding habitats are crucial to combat biodiversity loss and maintain diversity in these areas.

Environmental health in the upper-middle Luján River basin from a multi-biomarker approach

The objectives of this study were to evaluate the ecophysiological state of the biota using a set of biomarkers in the upper-middle Luján River. To this aim, we collected adult Cnesterodon decemmaculatus fish, biofilm and water at three sampling sites in the upper-middle Luján River (S1: rural area, S2: Luján City and S3: urban area after passing Lujan City). For each site we determined physicochemical variables, heavy metal concentration in water, 19 biomarkers in fish (morphometric, histological, genotoxic, oxidative stress, metabolic and neurotoxic) and six biomarkers in biofilm (oxidative stress and extracellular enzyme). Additionally, we compared the responses of fish and biofilm with those of laboratory controls obtained from outdoor cultures. Our results indicated increased heavy metal concentration at all sites, mainly As and Cd, and decreased dissolved oxygen at S1 and S3. In fish, genotoxic biomarkers showed significant differences with respect to the control. The comet assay indicated damage in fish at the urbanized sites (S2 and S3) and an increased frequency of erythrocytes with nuclear aberrations at all sites. The CEA index (cellular energy allocation), calculated from the metabolic biomarkers and lipid concentration were significantly increased at S1. The gill damage evaluated histologically and with three indices indicated severe damage at all sites. Gills showed thickened primary and secondary lamellae and fusion of filaments at all sites, but a significant increase in mucous cells was only found at S1 and S3. Biofilm showed increased values of extracellular enzymes (β-glucosidase and alkaline phosphatase, lipid peroxidation and oxidative stress enzymes (i.e., catalase) at S3. These results are novel in that they incorporated laboratory controls allowing for comparisons with fish and biofilm from the field. They provided information on the status of a fish population and biofilm community, indicating the negative effect of river water deterioration on the tested organisms. Moreover, results showed what biomarkers were most sensitive for each biological sample.

Linking microphytobenthos distribution and mudflat geomorphology under varying sedimentary regimes using unoccupied aerial vehicle (UAV)-acquired multispectral reflectance and photogrammetry

Microphytobenthic (MPB) biofilms play significant roles in the ecology of coastal mudflats, including provision of essential food resources to shorebird species. In these ecosystems, water-divergence structures like jetties and causeways can drastically alter sedimentation patterns and mudflat topography, yet their effects on MPB biofilm biomass and distribution are poorly understood. Here, we used a combination of unoccupied aerial vehicle (UAV) technologies, photogrammetric processing, and sediment field samples to compare biofilm and mudflat characteristics between areas of the Fraser River Estuary with varying sedimentary regimes and shorebird use. Our aims were to: (1) demonstrate the use of fine spatial resolution UAV-acquired multispectral imagery (cm2) with extensive spatial coverage (>km2) and a co-alignment photogrammetric processing techniques to survey MPB biofilm and mudflat topography at spatial scales and detail relevant to foraging shorebirds; and, (2) investigate the effects of water-divergence structures on mudflat elevation and microtopography, as well as MPB biofilm biomass, distribution, and spatial patterning. From a technical perspective, co-alignment allowed us to analyze aligned and continuous fine-resolution elevation models and orthomosaics for large areas of the estuary, while the normalized difference vegetation index was a good predictor of sediment chlorophyll-a (R2 = 0.9). Using these data products, we found that mudflats in close proximity to water-divergence structures have cross-shore profiles characteristic of low sediment supply as well as decreased microtopographic variability. At disturbed sites, elevation and microtopography had a weaker influence on biofilm biomass compared to intact estuarine ecosystem sites. Analysis of biofilm patch showed that sites either had a relatively small number of large, contiguous patches, or a large number of smaller, isolated patches; however, less disturbed sites did not necessarily have larger biofilm patches than more disturbed sites. We conclude that UAV-acquired multispectral imagery and co-alignment-based workflow are promising new tools for ecologists to map, monitor, and understand MPB biofilm dynamics in ecologically sensitive estuaries.

Heavy metals in wetlands of southwestern India: from sediments through invertebrates to migratory shorebirds

Heavy metal pollution in Indian wetlands is rising due to industrial, agricultural and urban development activities. Shorebirds occupy upper trophic levels and are therefore especially vulnerable to heavy metal pollution. We evaluated the concentration of heavy metals (zinc, copper, cobalt, chromium, lead and cadmium) in 22 common species of migrant shorebirds (220 shorebird dropping samples) with diverse foraging behaviors, in their different prey (55 prey samples) and in the sediments (90 sediment samples) in different habitat types (mudflats, mangroves and sand beaches) between 2019 and 2021. Further, we analyzed a total of 10 biofilm samples from mudflats and mangroves. We detected relatively low concentrations of heavy metals in the sediments (Zn concentration range: 9.11-40.91 mg/kg; Cu: 5.74-21.38 mg/kg; Co: 2.00-4.04 mg/kg; Cr: 4.05-41.03 mg/kg; Pb: 1.02-7.19 mg/kg; Cd: 0.56-4.35 mg/kg). However, we measured relatively high concentrations of heavy metals in invertebrate prey species (Zn concentration range: 84.72-224.74 mg/kg; Cu: 26.63-170.36 mg/kg; Co: 13.98-14.42 mg/kg; Cr: 14.78-98.16 mg/kg; Pb: 18.95-157.29 mg/kg; Cd: 9.33-60.56 mg/kg). In addition, we found high concentrations of heavy metals in shorebird droppings (Zn concentration range: 41.33-58.8 mg/kg; Cu: 31.42-52.11 mg/kg; Co: 36.34-55.68 mg/kg; Cr: 52.3-68.21 mg/kg; Pb: 25.94-43.13 mg/kg; Cd: 5.53-16.4 mg/kg). It is evident that concentration of heavy metals increased successively moving from sediment to prey to shorebird species, likely through trophic transfer. The biofilm samples contained very high concentrations of Cr, Pb and Cd (22.64, 28.09 and 18.46 mg/kg respectively) which could be harmful to biofilm grazing shorebirds. Since bioaccumulation of heavy metals entail risks in living species, we suggest that increasing concentrations may detrimentally affect physiological processes in invertebrates and shorebirds. There is an urgent need to identify the sources of pollution and to reduce the discharge of heavy metals and other pollutants into coastal and inland wetlands.

The exploitation of biofilm by migrant western sandpipers (Calidrismauri)

Assessing the quality of migratory shorebird stopover sites requires good measures of food availability. We developed simple methods to measure biofilm grazing by migrant western sandpipers (Calidris mauri), a species for which biofilm is an important dietary component. We used a field-portable chlorofluorometer to measure the density of chlorophyll-a (Chl-a) in surficial biofilms on Roberts Bank, a large intertidal mudflat in British Columbia, Canada, during northward migration. Chl-a density begins at a low level during each diurnal emersion period, and increases steadily during emersion at 4.1 mg m^-2 h^-1 for a total of ∼24.6 mg m^-2 over a typical 6 h emersion period and ∼41 mg m^-2 over a 10 h emersion period. Western sandpipers grazed at 1.35-1.45 mg Chl-a m^-2 min^-1, thus biofilm production supports 17.6 min m^-2 of grazing time during a 6 h low tide period and 29.3 min m^-2 during a 10 h period. During peak northward migration, the average grazing intensity of western sandpipers over an intertidal emersion period was 3.3-6.4 min m^-2, suggesting that biofilm accumulation was 2.7-8.8 fold greater than the amount consumed. We found Chl-a density was highest (∼65 mg per m²) within 40 m of the shoreline. Grazing intensity was lowest close to shore, where predation risk from falcon attacks is highest. Grazing intensity peaked at 240 m and then declined, lowering Chl-a density at greater distances to a uniform level of ∼54 mg m^-2. These results indicate that interactions between biofilm production and sandpiper grazing underlie spatio-temporal patterns in biofilm abundance on Roberts Bank.

Long chain fatty acids analysis of intertidal biofilm by direct injection liquid chromatography time of flight mass spectrometry

The critical importance of mono- and polyunsaturated fatty acids (FAs) in a variety of biological functions, including animal nutrition and as an environmental stress monitor, is well recognized. However, while methods exist for monitoring of fatty acids, few are specific either to the profile of a microphytobenthos matrix or practical in application to multiple, diverse intertidal biofilm sample sets. In the current study, a sensitive liquid chromatography (LC) quadrupole time of flight mass spectrometry (QTOF) method was developed for the quantitative analysis of 31 FAs specific to intertidal biofilm, a thin mucilaginous layer of microalgae, bacteria, and other organisms on the surface of coastal mudflats, which provide a rich source of FAs for migratory birds. Preliminary screening of diverse biofilm samples collected from shorebird feeding grounds highlighted eight saturated (SFA), seven monounsaturated (MUFA), and sixteen polyunsaturated FAs (PUFA) that were selected for analysis. Improved method detection limits in the range 0.3-2.6 ngmL^-1 were achieved, excepting for stearic acid at 10.6 ngmL^-1. These excellent results were obtained without use of complex sample extraction and clean-up procedures undertaken by other published methods. An alkaline matrix of dilute aqueous ammonium hydroxide with methanol was shown to be selective for extraction and stability of the more hydrophilic fatty acid components. The direct injection method showed excellent precision and accuracy both during validation and application to hundreds of real-world intertidal biofilm samples from the Fraser River estuary (British Columbia, Canada) and other areas of the region frequented by shoreline birds.

Alterations in hydrological variables and substrate qualities and its impacts on a critical conservation reserve in the southwest coast of India

The present study investigated the long-term fluctuation in the hydrological and substrate variables at different habitats of Kadalundi-Vallikkunnu Community Reserve (KVCR) over the last decade. We hypothesize that natural impact represented by climate change and long-term impact from anthropogenic activities including industrialization and intensified agricultural practices have a direct effect on the natural hydrological cycle and the quality of coastal shores and thus can be a reason for coastal habitat and wildlife degradation. Results indicate a significant degradation in nutrient and organic matter concentration in the sediment and dramatic increase in nutrient concentration, salinity, temperature, and pH in the water. Sediment and water degradation can be one of the important factors affecting the structural quality and biodiversity of the region. Therefore, having long-term monitoring data can be useful to plan and design management and conservation strategies to protect local biodiversity and ecosystem.

Using stable isotope (δ13C, δ15N) values from feces and breath to infer shorebird diets

The use of stable isotopes of carbon (δ13C) and nitrogen (δ15N) from feces and breath offers potential as non-destructive tools to assess diets and nutrition. How stable isotope values derived from breath and feces compare with those from commonly used tissues, such as blood fractions and liver, remains uncertain, including understanding the metabolic routing of dietary nutrients. Here, we measured δ13C and δ15N from feces and δ13C of breath from captive Red-necked Stints (Calidris ruficollis) and 26 species of wild-caught migratory shorebirds (n = 259 individuals) and compared them against isotopic values from blood and feathers. For captive birds fed either cereal- or fish-based diets, differences in δ13C between feces and lipid-free diet were small, - 0.2 ± 0.5‰ and 0.1 ± 0.3‰, respectively, and differences in δ15N, - 0.7 ± 0.5‰ and - 0.5 ± 0.5‰, respectively. Hence, δ13C and δ15N values from feces can serve as proxies for ingested proteinaceous tissues and non-soluble carbohydrates because isotopic discrimination can be considered negligible. Stable isotope values in plasma and feces were strongly correlated in wild-caught shorebirds, indicating feces can be used to infer assimilated macronutrients. Breath δ13C was 1.6 ± 0.8‰ to 5.6 ± 1.2‰ lower than bulk food sources, and breath C derived from lipids was estimated at 47.5% (cereal) to 96.1% (fish), likely underlining the importance of dietary lipids for metabolism. The findings validate the use of stable isotope values of feces and breath in isotopic assays to better understand the dietary needs of shorebirds.

Length of stay and departure strategies of Semipalmated Sandpipers (Calidris pusilla) during post-breeding migration in the upper Bay of Fundy, Canada

The Bay of Fundy, Canada is a critical staging area for Semipalmated Sandpipers (Calidris pusilla) during post-breeding migration. Recent range-wide population declines and changes in diet and migratory timing in the Bay of Fundy prompted a re-examination of staging ecology, including length of stay (last estimated in 1981), which is used in calculating migratory population estimates. We used radio-telemetry and the Motus Wildlife Tracking System to estimate individual length of stay and departure conditions for 159 Semipalmated Sandpipers in 2013 and 2014. Using tracking data we compared two estimation methods, minimum length of stay and mark-recapture modelling. Using minimum length of stay, the mean length of stay was approximately 21 days, an increase from the previous estimate of 15 days. Mark-recapture models suggested a much longer staging period that is inconsistent with other data. Sandpipers captured early in the staging period stayed longer on average than those captured later. Departures from the staging area were correlated with north-westerly winds, moderate to high wind speeds and low but rising atmospheric pressures. We suggest that Semipalmated Sandpipers in the Bay of Fundy are not operating on a time-selected migration schedule and instead wait for favourable weather conditions to depart, which occur more often later in the migratory period. Population trends in the Bay of Fundy should be re-evaluated in light of the increased length of stay.

Biofilm and invertebrate consumption by western sandpipers (Calidris mauri) and dunlin (Calidris alpina) during spring migratory stopover: insights from tissue and breath CO2 isotopic (δ 13C, δ 15N) analyses

Shorebirds use key migratory stopover habitats in spring and fall where body proteins are replenished and lipids stored as fuel for the remaining journey. The Fraser River estuary, British Columbia, Canada, is a critical spring stopover site for hundreds of thousands of migrating western sandpiper, Calidris mauri, and dunlin, Calidris alpina. Intertidal biofilm in spring is an important nutritional source for western sandpiper, with previous isotopic research predicting 45-59% of total diet and 50% of total energy needs. However, these studies relied on isotopic mixing models that did not consider metabolic routing of key dietary macromolecules. Complexity arises due to the mixed macromolecular composition of biofilm that is difficult to characterize isotopically. We expanded on these earlier findings by considering a protein pathway from diet to the body protein pool represented by liver tissue, using a Bayesian mixing model based on δ ¹³C and δ ¹⁵N. We used δ ¹³C measurements of adipose tissue and breath CO₂ to provide an estimate of the carbohydrate and protein δ ¹³C values of microphytobenthos and used these derived values to better inform the isotopic mixing models. Our results reinforce earlier estimates of the importance of biofilm to staging shorebirds in predicting that assimilated nutrients from biofilm contribute ~35% of the protein budgets for staging western sandpipers (n = 13) and dunlin (n = 11) and at least 41% of the energy budget of western sandpiper (n = 69). Dunlin's ingestion of biofilm appeared higher than anticipated given their expected reliance on invertebrate prey compared to western sandpiper, a biofilm specialist. Isotopic analyses of bulk tissues that consider metabolic routing and that make use of breath CO₂ and adipose lipid assays can provide new insights into avian physiology. We advocate further isotopic research to better understand biofilm use by migratory shorebirds in general and as a critical requirement for more effective conservation.

Quantifying seasonal variations in microphytobenthos biomass on estuarine tidal flats using Sentinel-1/2 data

Quantifying temporal and spatial changes in microphytobenthos (MPB) biomass is critical for understanding its ecological function in estuarine food web networks and carbon flows. However, tidal fluctuations and the complex composition of coastal sediment limit remote sensing applications for estimating MPB biomass seasonal variations in estuarine tidal flats. We integrated radar Sentinel-1 (S1) and optical Sentinel-2 (S2) remote sensing data to quantify the temporal and spatial variability in MPB biomass in the Changjiang estuary, China. Pixels of water bodies on the tidal flats were removed by dynamic threshold segmentation of the water index with the combined S1 and S2 data, and salt marsh pixels were masked with the first red-edge band in the S2 data. We used the continuum-removed spectral absorption depth feature to construct a regression model for estimating MPB biomass with a regression coefficient of 0.81. The results showed that spectral absorption continuum removal methods using broadband multispectral data for MPB estimation are a promising alternative to hyperspectral narrowband ratio operation. Compared with the widely used normalized difference vegetation index (NDVI), the scaled absorption depth feature was more stable for MPB estimation under a changeable sediment background. The produced seasonal map showed that the high biomass levels of the MPB in the study area are not limited to one season and one site, with an annual mean biomass of 14.39 mg chlorophyll a (Chl-a)·m^-2 and 71% confirmed accuracy. The highest biomass levels occurred in summer in the supratidal zone (19.51 mg Chl-a·m^-2) and in spring in the intertidal zone (17.10 mg Chl-a·m^-2) in the Changjiang estuary. The relative shore height, derived from the tidal range here, is an important variable that shapes the MPB spatial distribution. This study demonstrates the potential of integrating high-spatial-resolution (10 m) S1 and S2 data for future large-scale estimation of intertidal MPB.

Sandpipers go with the flow: Correlations between estuarine conditions and shorebird abundance at an important stopover on the Pacific Flyway

Estuaries of major rivers provide important stopover habitat for migratory birds throughout the world. These estuaries experience large amounts of freshwater inputs from spring runoff. Understanding how freshwater inputs affect food supply for migrating birds, and how birds respond to these changes will be essential for effective conservation of critical estuarine habitats. We estimated trends over time in counts of Western Sandpiper (Calidris mauri) and Pacific Dunlin (Calidris alpina pacifica) during northward migration on the Fraser River estuary, British Columbia, Canada, where shorebirds feed extensively on intertidal biofilm and invertebrates. We also examined whether counts were correlated with a suite of environmental variables related to local conditions (precipitation, temperature, wind speed and direction, solar radiation, tidal amplitude, and discharge rates from the Fraser River) during a total of 540 surveys from 1991 to 2019. Counts of Western Sandpiper declined ~54% (-2.0% per annum) over the entire study period, and 23% from 2009 to 2019 (-0.9% per annum). Counts of Pacific Dunlin did not show a statistically significant change over the study period. Counts of shorebirds were lower when discharge from the Fraser River was high, which we propose results from a complex interaction between the abrupt changes in salinity and the estuarine food web related to the quantity or quality of intertidal biofilm. Counts were also higher when tidal amplitude was lower (neap tides), potentially related to longer exposure times of the mudflats than during spring tides. Effects of wind are likely related to birds delaying departure from the stopover site during unfavorable wind conditions. The negative trend in migrating Western Sandpipers is consistent with declines in nonbreeding areas as observed in Christmas Bird Counts. Understanding causes of population change in migratory shorebirds highlights the need for research on mechanistic pathways in which freshwater inputs affect food resources at estuarine stopovers.

Age- and sex-related dietary specialization facilitate seasonal resource partitioning in a migratory shorebird

Dietary specialization is common in animals and has important implications for individual fitness, inter- and intraspecific competition, and the adaptive potential of a species. Diet composition can be influenced by age- and sex-related factors including an individual's morphology, social status, and acquired skills; however, specialization may only be necessary when competition is intensified by high population densities or increased energetic demands.To better understand the role of age- and sex-related dietary specialization in facilitating seasonal resource partitioning, we inferred the contribution of biofilm, microphytobenthos, and benthic invertebrates to the diets of western sandpipers (Calidris mauri) from different demographic groups during mid-winter (January/February) and at the onset of the breeding migration (April) using stable isotope mixing models. Western sandpipers are sexually dimorphic with females having significantly greater body mass and bill length than males.Diet composition differed between seasons and among demographic groups. In winter, prey consumption was similar among demographic groups, but, in spring, diet composition differed with bill length and body mass explaining 31% of the total variation in diet composition. Epifaunal invertebrates made up a greater proportion of the diet in males which had lesser mass and shorter bills than females. Consumption of Polychaeta increased with increasing bill length and was greatest in adult females. In contrast, consumption of microphytobenthos, thought to be an important food source for migrating sandpipers, increased with decreasing bill length and was greatest in juvenile males.Our results provide the first evidence that age- and sex-related dietary specialization in western sandpipers facilitate seasonal resource partitioning that could reduce competition during spring at the onset of the breeding migration.Our study underscores the importance of examining resource partitioning throughout the annual cycle to inform fitness and demographic models and facilitate conservation efforts.

Lateral carbon fluxes and CO2 evasion from a subtropical mangrove-seagrass-coral continuum

Mangrove, seagrass, and coral habitats often lie adjacent to each other in the tropics and subtropics. Lateral carbon fluxes and their consecutive effects on CO₂ dynamics and air-water fluxes along the ecosystem continuum are often overlooked. We measured the partial pressure of CO₂ in water and associated biogeochemical parameters with a high temporal resolution and estimated air-water CO₂ fluxes along the ecosystem continuum. Their lateral fluxes were estimated by using a biogeochemical mass-balance model. The results showed that the waters surrounding mangrove, seagrass, and coral habitats acted as a strong, moderate, and weak source of atmospheric CO_2, respectively. The mangrove zone acted as a net source for TAlk, DIC, and DOC, but as a net sink for POC. The contribution of riverine and mangrove-derived OM was substantially high in mangrove sediment, indicating that net transport of POC towards the coastal sea was suppressed by the sediment trapping function of mangroves. The seagrass zone acted as a net source of all carbon forms and TAlk, whereas the coral zone acted as a net sink of TAlk, DIC, and DOC. The lateral transport of carbon from mangroves and rivers offset atmospheric CO₂ uptake in the seagrass zone. DOC degradation might increase DIC, and other biogeochemical processes facilitate the functioning of the coral zone as a DOC sink. However, as a result of DIC uptake by autotrophs, mainly in the coral zone, the whole ecosystem continuum was a net sink of DIC and atmospheric CO₂ evasion was lowered. We conclude that lateral transport of riverine and mangrove-derived DIC, TAlk, and DOC affect CO₂ dynamics and air-water fluxes in seagrass and coral ecosystems. Thus, studies of lateral carbon fluxes at local and regional scales can improve global carbon budget estimates.

Gut microbiome is affected by inter-sexual and inter-seasonal variation in diet for thick-billed murres (Uria lomvia)

The role of the gut microbiome is increasingly being recognized by health scientists and veterinarians, yet its role in wild animals remains understudied. Variations in the gut microbiome could be the result of differential diets among individuals, such as variation between sexes, across seasons, or across reproductive stages. We evaluated the hypothesis that diet alters the avian gut microbiome using stable isotope analysis (SIA) and 16S rRNA gene sequencing. We present the first description of the thick-billed murre (Uria lomvia) fecal microbiome. The murre microbiome was dominated by bacteria from the genus Catellicoccus, ubiquitous in the guts of many seabirds. Microbiome variation was explained by murre diet in terms of proportion of littoral carbon, trophic position, and sulfur isotopes, especially for the classes Actinobacteria, Bacilli, Bacteroidia, Clostridia, Alphaproteobacteria, and Gammaproteobacteria. We also observed differences in the abundance of bacterial genera such as Catellicoccus and Cetobacterium between sexes and reproductive stages. These results are in accordance with behavioural observations of changes in diet between sexes and across the reproductive season. We concluded that the observed variation in the gut microbiome may be caused by individual prey specialization and may also be reinforced by sexual and reproductive stage differences in diet.

Contrasted impact of two macrofaunal species (Hediste diversicolor and Scrobicularia plana) on microphytobenthos spatial distribution and photosynthetic activity at microscale

Microphytobenthos is most often the primary source of carbon for coastal soft-sediment communities, especially in intertidal and shallow subtidal environments. The influence of benthic macrofaunal organisms on microphytobenthic biomass, spatial distribution and photosynthetic capacities is not only resulting from their feeding intensity but also indirectly from their bioturbation activity, which regulates nutrient fluxes and sediment mixing. This study compares the impact of two species (Hediste diversicolor and Scrobicularia plana) that dominate macrofaunal communities in estuarine intertidal mudflats on microphytobenthic biomass and photosynthetic activity. Imaging-PAM fluorescence was used to non-invasively map the development of microphytobenthic biomass and to assess its spatial extent. Our results showed that, due to intense deposit feeding, Scrobicularia plana quickly limited microphytobenthos growth and photosynthetic activity, even at low density (<250 ind m^-2). In contrast, the negative impact of Hediste diversicolor on microphytobenthos development due to direct consumption was very low. Thereby, the stimulation of nutrient fluxes at the sediment-water interface resulting from bioirrigation seems to enhance microphytobenthos growth and photosynthesis.

Composition and Drivers of Gut Microbial Communities in Arctic-Breeding Shorebirds

Gut microbiota can have important effects on host health, but explanatory factors and pathways that determine gut microbial composition can differ among host lineages. In mammals, host phylogeny is one of the main drivers of gut microbiota, a result of vertical transfer of microbiota during birth. In birds, it is less clear what the drivers might be, but both phylogeny and environmental factors may play a role. We investigated host and environmental factors that underlie variation in gut microbiota composition in eight species of migratory shorebirds. We characterized bacterial communities from 375 fecal samples collected from adults of eight shorebird species captured at a network of nine breeding sites in the Arctic and sub-Arctic ecoregions of North America, by sequencing the V4 region of the bacterial 16S ribosomal RNA gene. Firmicutes (55.4%), Proteobacteria (13.8%), Fusobacteria (10.2%), and Bacteroidetes (8.1%) dominated the gut microbiota of adult shorebirds. Breeding location was the main driver of variation in gut microbiota of breeding shorebirds (R² = 11.6%), followed by shorebird host species (R² = 1.8%), and sampling year (R² = 0.9%), but most variation remained unexplained. Site variation resulted from differences in the core bacterial taxa, whereas rare, low-abundance bacteria drove host species variation. Our study is the first to highlight a greater importance of local environment than phylogeny as a driver of gut microbiota composition in wild, migratory birds under natural conditions.

Biotransport of metallic trace elements from marine to terrestrial ecosystems by seabirds

Physical systems, such as currents and winds, have traditionally been considered responsible for transporting contaminants. Although evidence is mounting that animals play a role in this process through their movements, we still know little about how such contaminant biotransport occurs and the extent of effects at deposition sites. In the present study, we address this question by studying how rhinoceros auklets (Cerorhinca monocerata), a seabird that occurs in immense colonies (∼300 000 pairs at our study site, Teuri Island), affect contaminant levels at their colony and at nearby sites. More specifically, we hypothesize that contaminants are transported and deposited by seabirds at their colony and that these contaminants are passed on locally to the terrestrial ecosystem. To test this hypothesis, we analyzed the concentration of 9 heavy metal and metalloids, as well as δ¹³ C and δ¹⁵ N stable isotopes, in bird tissues, plants, and soil, both within and outside of the colony. The results show that rhinoceros auklets transport marine-derived mercury (Hg), possibly from their wintering location, and deposit Hg via their feces at their breeding site, thereby contaminating plants and soils within the breeding colony. The present study confirms not only that animals can transport contaminants from marine to terrestrial ecosystems, potentially over unexpectedly long distances, but also that bird tissues contribute locally to plant contamination. Environ Toxicol Chem 2019;38:106-114. © 2018 SETAC.

Gut microbiota of a long-distance migrant demonstrates resistance against environmental microbe incursions

Migratory animals encounter suites of novel microbes as they move between disparate sites during their migrations, and are frequently implicated in the global spread of pathogens. Although wild animals have been shown to source a proportion of their gut microbiota from their environment, the susceptibility of migrants to enteric infections may be dependent upon the capacity of their gut microbiota to resist incorporating encountered microbes. To evaluate migrants' susceptibility to microbial invasion, we determined the extent of microbial sourcing from the foraging environment and examined how this influenced gut microbiota dynamics over time and space in a migratory shorebird, the Red-necked stint Calidris ruficollis. Contrary to previous studies on wild, nonmigratory hosts, we found that stint on their nonbreeding grounds obtained very little of their microbiota from their environment, with most individuals sourcing only 0.1% of gut microbes from foraging sediment. This microbial resistance was reflected at the population level by only weak compositional differences between stint flocks occupying ecologically distinct sites, and by our finding that stint that had recently migrated 10,000 km did not differ in diversity or taxonomy from those that had inhabited the same site for a full year. However, recent migrants had much greater abundances of the genus Corynebacterium, suggesting a potential microbial response to either migration or exposure to a novel environment. We conclude that the gut microbiota of stint is largely resistant to invasion from ingested microbes and that this may have implications for their susceptibility to enteric infections during migration.

Fatty acid composition and concentration of alternative food of Semipalmated Sandpipers (Calidris pusilla) in the upper Bay of Fundy, Canada

Semipalmated Sandpipers (Calidris pusilla (L., 1766)) that migrate through the upper Bay of Fundy, Canada, depend on a rich food supply to fuel their continued migration. Although past studies have reported a diet dominated by the amphipod Corophium volutator (Pallas, 1766), an animal rich in n–3 polyunsaturated fatty acids (PUFAs), recent evidence suggests that sandpiper diets are broad. This is beneficial in that it allows Semipalmated Sandpipers to respond to a changing food base, but quality of food is also important. PUFAs are important in providing the energy required by migrating birds and may play a role in migratory preparation. We assessed fatty acid (FA) concentrations and proportions in three common food items. We found that polychaetes should adequately meet the needs of migrating sandpipers in terms of FA composition. Concentrations of FAs in biofilm were low, but proportionally, n–3 PUFAs were well represented, particularly in biofilm collected in Shepody Bay, where it forms a substantial part of the sandpiper diet. Therefore, provided that birds can consume a sufficient volume of biofilm, it is also probably a suitable source of essential FAs. Our results suggest that Semipalmated Sandpipers in the Bay of Fundy can meet their FA needs with a variety of dietary options.

Accumulation of Trace Metal Elements (Cu, Zn, Cd, and Pb) in Surface Sediment via Decomposed Seagrass Leaves: A Mesocosm Experiment Using Zostera marina L

Accumulation of Cu, Zn, Cd, and Pb in the sediment of seagrass ecosystems was examined using mesocosm experiments containing Zostera marina (eelgrass) and reference pools. Lead was approximately 20-fold higher in the surface sediment in the eelgrass pool than in eelgrass leaves and epiphytes on the eelgrass leaves, whereas zinc and cadmium were significantly lower in the surface sediment than in the leaves, with intermediate concentrations in epiphytes. Copper concentrations were similar in both the surface sediment and leaves but significantly lower in epiphytes. Carbon and nitrogen contents increased significantly with increasing δ13C in surface sediments of both the eelgrass and reference pools. Copper, Zn, Cd, and Pb also increased significantly with increasing δ13C in the surface sediment in the eelgrass pool but not in the reference pool. By decomposition of eelgrass leaves with epiphytes, which was examined in the eelgrass pool, copper and lead concentrations increased more than 2-fold and approximately a 10-fold, whereas zinc and cadmium concentrations decreased. The high copper and lead concentrations in the surface sediment result from accumulation in decomposed, shed leaves, whereas zinc and cadmium remobilized from decomposed shed leaves but may remain at higher concentrations in the leaves than in the original sediments. The results of our mesocosm study demonstrate that whether the accumulation or remobilization of trace metals during the decomposition of seagrass leaves is trace metal dependent, and that the decomposed seagrass leaves can cause copper and lead accumulation in sediments in seagrass ecosystems.

Prey type and foraging ecology of Sanderlings Calidris alba in different climate zones: are tropical areas more favourable than temperate sites?

Sanderlings (Calidris alba) are long-distance migratory shorebirds with a non-breeding range that spans temperate and tropical coastal habitats. Breeding in the High Arctic combined with non-breeding seasons in the tropics necessitate long migrations, which are energetically demanding. On an annual basis, the higher energy expenditures during migration might pay off if food availability in the tropics is higher than at temperate latitudes. We compared foraging behaviour of birds at a north temperate and a tropical non-breeding site in the Netherlands and Ghana, respectively. In both cases the birds used similar habitats (open beaches), and experienced similar periods of daylight, which enabled us to compare food abundance and availability, and behavioural time budgets and food intake. During the non-breeding season, Sanderlings in the Netherlands spent 79% of their day foraging; in Ghana birds spent only 38% of the daytime period foraging and the largest proportion of their time resting (58%). The main prey item in the Netherlands was the soft-bodied polychaete Scolelepis squamata, while Sanderlings in Ghana fed almost exclusively on the bivalve Donax pulchellus, which they swallowed whole and crushed internally. Average availability of polychaete worms in the Netherlands was 7.4 g ash free dry mass (AFDM) m⁻², which was one tenth of the 77.1 g AFDM m⁻² estimated for the beach in Ghana. In the tropical environment of Ghana the Sanderlings combined relatively low energy requirements with high prey intake rates (1.64 mg opposed to 0.13 mg AFDM s⁻¹ for Ghana and the Netherlands respectively). Although this may suggest that the Ghana beaches are the most favourable environment, processing the hard-shelled bivalve (D. pulchellus) which is the staple food could be costly. The large amount of daytime spent resting in Ghana may be indicative of the time needed to process the shell fragments, rather than indicate rest.

Effects of organic pollution on biological communities of marine biofilm on hard substrata

We examined the effect of organic enrichment on diatom and bacterial assemblages of marine epilithic biofilms on two locations in the Mediterranean, one situated in Spain and the other in Greece. Total organic carbon, total organic nitrogen, stable isotopes (δ(13)C and δ(15)N) and chlorophyll a indicated significant incorporation of organic wastes, increased primary production and trophic niche modifications on the biofilms close to the organic enrichment source. In Spain, where the organic load was higher than in Greece, diatom and, to some extent, bacterial assemblages varied following the organic enrichment gradient. The taxonomic richness of diatom and bacterial communities was not influenced by organic enrichment. Classical community parameters showed consistent patterns to organic pollution in both locations, whereas community assemblages were only influenced when organic pollution was greatest. The successional patterns of these communities were similar to other epilithic communities. The modification of community assemblages induced by organic pollution may affect ecological functions.

Mercury levels in common (Actitis hypoleucos) and green (Tringa ochropus) sandpipers from west-central Iran

Mercury concentrations were examined in the liver, kidneys, and tail and breast feathers of common and green sandpipers from Zayanderud Dam in west-central Iran. The aim was to provide indirect information about habitat contamination. Tail feathers of both species had higher mercury levels compared to other tissues. Moreover, tissues of common sandpipers had significantly higher mercury concentrations compared to tissues of green sandpipers. Male specimens of both species had higher values of mercury compared to females. The pattern of larger body size-higher mercury body burden was not completely true in the current study. Smaller and shorter common sandpipers had higher mercury concentrations compared to taller and heavier green sandpipers. At the intraspecific level, body weight was positively correlated with mercury concentrations in tissues of common sandpipers. Based on the data presented here, it appears that these sandpipers, especially common sandpipers, are at potential risk from the toxic effects of mercury.

Biofilm consumption and variable diet composition of western sandpipers (Calidris mauri) during migratory stopover

Many shorebird species undertake long-distance migrations punctuated by brief stays at food-rich, estuarine stopover locations. Understanding use of these food resources helps guide conservation and responsible development decisions. We determined the extent and degree to which Western Sandpiper (Calidris mauri) utilized biofilm as a food resource across a large and variable stopover location during northward (spring) migration. We investigated the spatial heterogeneity in diet composition, to determine whether shorebirds were consistently feeding on biofilm or whether diet varied between naturally and anthropogenically delineated sites. We used stable isotope analysis to estimate that biofilm conservatively comprised 22% to 53% of Western Sandpiper droppings across all sampling sites and that prey composition differed significantly between areas within the stopover location. Widespread biofilm consumption demonstrates the importance of biofilm as a dietary component. Variable diet composition suggests that habitat heterogeneity may be an important component of high quality stopover locations in the context of “state-dependant trade-offs” of Western Sandpiper population sub-groups. Future management decisions must consider and address potential impacts on the biofilm community throughout a stopover location, as single site studies of diet composition may not be adequate to develop effective management strategies for entire stopover sites.

Dietary compositions and their seasonal shifts in Japanese resident birds, estimated from the analysis of volunteer monitoring data

Determining the composition of a bird’s diet and its seasonal shifts are fundamental for understanding the ecology and ecological functions of a species. Various methods have been used to estimate the dietary compositions of birds, which have their own advantages and disadvantages. In this study, we examined the possibility of using long-term volunteer monitoring data as the source of dietary information for 15 resident bird species in Kanagawa Prefecture, Japan. The data were collected from field observations reported by volunteers of regional naturalist groups. Based on these monitoring data, we calculated the monthly dietary composition of each bird species directly, and we also estimated unidentified items within the reported foraging episodes using Bayesian models that contained additional information regarding foraging locations. Next, to examine the validity of the estimated dietary compositions, we compared them with the dietary information for focal birds based on stomach analysis methods, collected from past literatures. The dietary trends estimated from the monitoring data were largely consistent with the general food habits determined from the previous studies of focal birds. Thus, the estimates based on the volunteer monitoring data successfully detected noticeable seasonal shifts in many of the birds from plant materials to animal diets during spring—summer. Comparisons with stomach analysis data supported the qualitative validity of the monitoring-based dietary information and the effectiveness of the Bayesian models for improving the estimates. This comparison suggests that one advantage of using monitoring data is its ability to detect dietary items such as fleshy fruits, flower nectar, and vertebrates. These results emphasize the potential importance of observation data collecting and mining by citizens, especially free descriptive observation data, for use in bird ecology studies.

Trace elements in Pacific Dunlin (Calidris alpina pacifica): patterns of accumulation and concentrations in kidneys and feathers

Trace element concentrations were measured in Pacific Dunlin (Calidris alpina pacifica) to identify factors that influence accumulation and to assess toxicity risks. We report concentrations of cadmium, copper, and zinc in kidneys as well as copper, lead, mercury, selenium and zinc in feathers. Relationships between element concentrations and Dunlin age, sex, bill length, habitat preference, trophic level, and sample group were investigated with regression analyses. Stable isotope ratios of carbon and nitrogen in Dunlin muscle tissue were used to determine habitat preference and trophic level, respectively. Cadmium concentrations in kidneys were significantly related to habitat preference: [Cd] in estuarine foragers >[Cd] in terrestrial foragers. Cadmium accumulation was age-dependent as concentrations increased significantly within 10 months of hatch dates but not afterward. Concentrations of cadmium and zinc in kidneys as well as lead and mercury in feathers were below those known to cause deleterious effects in birds. In contrast, selenium concentrations in feathers (range: 2.1-14.0 µg/g) were often at levels associated with toxicity risks (>5 µg/g). Toxicity thresholds are not available for copper in kidneys or copper and zinc in feathers; however, measured concentrations of these elements were within documented ranges for sandpipers. Future studies should assess potential impacts of selenium on embryonic development in Dunlin and other sandpipers. Risk assessments would yield more conclusive results for all elements if impacts under ecologically relevant stresses (e.g. development in the wild, migration, predation) were better understood.

Concentration and partitioning of metals in intertidal biofilms: implications for metal bioavailability to shorebirds

We compared zinc, copper and cadmium concentrations and the operationally defined geochemical partitioning of the three metals in sediments enriched with biofilm versus sediments without obvious biofilm present (reference) sampled from five locations within the Fraser River Delta, British Columbia, Canada. Two-way ANOVA's with site and biofilm (enriched or reference) as the two factors were applied to determine if metal concentrations or the partitioning of the metal was dependent on the two factors. Sediment enriched in biofilm contained greater amounts of aqua regia extracted zinc and copper and tended to have greater amounts of reducible cadmium as compared to reference sediments. By contrast, reference sediments had greater concentrations of easily reducible copper suggesting differences in speciation between the two sediment types. Greater concentrations of reducible cadmium within biofilm may provide a route of contaminant exposure to shorebirds whose diet is dependent on biofilm.

The long and the short of it: no dietary specialisation between male and female western sandpipers despite strong bill size dimorphism

Many bird species show spatial or habitat segregation of the sexes during the non-breeding season. One potential ecological explanation is that differences in bill morphology favour foraging niche specialisation and segregation. Western sandpipers Calidris mauri have pronounced bill size dimorphism, with female bills averaging 15% longer than those of males. The sexes differ in foraging behaviour and exhibit partial latitudinal segregation during the non-breeding season, with males predominant in the north and females in the south. Niche specialisation at a local scale might account for this broad geographic pattern, and we investigated whether longer-billed females and shorter-billed males occupy different foraging niches at 16 sites across the non-breeding range. We used stable-nitrogen (δ(15)N) isotope analysis of whole blood to test for dietary specialisation according to bill length and sex. Stable-nitrogen isotope ratios increase with trophic level. We predicted that δ(15)N values would increase with bill length and would be higher for females, which use a greater proportion of foraging behaviour that targets higher-trophic level prey. We used stable-carbon (δ(13)C) isotope analysis to test for habitat segregation according to bill length and sex. Stable-carbon isotope ratios vary between marine- and freshwater-influenced habitats. We predicted that δ(13)C values would differ between males and females if the sexes segregate between habitat types. Using a model selection approach, we found little support for a relationship between δ(15)N and either bill length or sex. There was some indication, however, that more marine δ(13)C values occur with shorter bill lengths. Our findings provide little evidence that male and female western sandpipers exhibit dietary specialisation as a function of their bill size, but indicate that the sexes may segregate in different habitats according to bill length at some non-breeding sites. Potential ecological factors underlying habitat segregation between sexes include differences in preferred habitat type and predation risk.

Key features of intertidal food webs that support migratory shorebirds

The migratory shorebirds of the East Atlantic flyway land in huge numbers during a migratory stopover or wintering on the French Atlantic coast. The Brouage bare mudflat (Marennes-Oléron Bay, NE Atlantic) is one of the major stopover sites in France. The particular structure and function of a food web affects the efficiency of carbon transfer. The structure and functioning of the Brouage food web is crucial for the conservation of species landing within this area because it provides sufficient food, which allows shorebirds to reach the north of Europe where they nest. The aim of this study was to describe and understand which food web characteristics support nutritional needs of birds. Two food-web models were constructed, based on in situ measurements that were made in February 2008 (the presence of birds) and July 2008 (absence of birds). To complete the models, allometric relationships and additional data from the literature were used. The missing flow values of the food web models were estimated by Monte Carlo Markov Chain--Linear Inverse Modelling. The flow solutions obtained were used to calculate the ecological network analysis indices, which estimate the emergent properties of the functioning of a food-web. The total activities of the Brouage ecosystem in February and July are significantly different. The specialisation of the trophic links within the ecosystem does not appear to differ between the two models. In spite of a large export of carbon from the primary producer and detritus in winter, the higher recycling leads to a similar retention of carbon for the two seasons. It can be concluded that in February, the higher activity of the ecosystem coupled with a higher cycling and a mean internal organization, ensure the sufficient feeding of the migratory shorebirds.

Social foragers adopt a riskier foraging mode in the centre of their groups

Foraging in groups provides many benefits that are not necessarily experienced the same way by all individuals. I explore the possibility that foraging mode, the way individuals exploit resources, varies as a function of spatial position in the group, reflecting commonly occurring spatial differences in predation risk. I show that semipalmated sandpipers (Calidris pusilla), a social foraging avian species, tended to adopt a riskier foraging mode in the central, more protected areas of their groups. Central birds effectively used the more peripheral group members as sentinels, allowing them to exploit a wider range of resources within the same group at the same time. This finding provides a novel benefit of living in groups, which may have a broad relevance given that social foraging species often exploit a large array of resources.

Variation in diet of Semipalmated Sandpipers (Calidris pusilla) during stopover in the upper Bay of Fundy, Canada

Semipalmated Sandpipers ( Calidris pusilla (L., 1766)) use the upper Bay of Fundy, Canada, as a critical stopover site during their annual fall migration to wintering grounds in South America. While in the area, they feed extensively on mudflat invertebrates. Historically the amphipod Corophium volutator (Pallas, 1766) has been thought to make up the majority of their diet. However, we have recently observed flexibility in foraging behaviour and prey selection by sandpipers. The extent of this flexibility and the current diet composition is unknown. To address these knowledge gaps, we assessed Semipalmated Sandpiper diets using stable isotope analyses of blood plasma and available prey items. Data were collected in two arms of the Bay of Fundy during summer 2009 and 2010. Diets fluctuated between years and sites, but in all cases the diet was much more diverse than previously thought. Polychaetes and biofilm made substantial contributions, and C. volutator was still present in the diet, but at much reduced levels than previously noted. This previously unrecognized inclusion of biofilm in the diet is consistent with recent observations of other calidrid shorebirds. Based on measures of prey availability, there is little evidence of preference for C. volutator.

Variable and complex food web structures revealed by exploring missing trophic links between birds and biofilm

Food webs are comprised of a network of trophic interactions and are essential to elucidating ecosystem processes and functions. However, the presence of unknown, but critical networks hampers understanding of complex and dynamic food webs in nature. Here, we empirically demonstrate a missing link, both critical and variable, by revealing that direct predator-prey relationships between shorebirds and biofilm are widespread and mediated by multiple ecological and evolutionary determinants. Food source mixing models and energy budget estimates indicate that the strength of the missing linkage is dependent on predator traits (body mass and foraging action rate) and the environment that determines food density. Morphological analyses, showing that smaller bodied species possess more developed feeding apparatus to consume biofilm, suggest that the linkage is also phylogenetically dependent and affords a compelling re-interpretation of niche differentiation. We contend that exploring missing links is a necessity for revealing true network structure and dynamics.

Biofilm responses to marine fish farm wastes

The changes in the biofilm community due to organic matter enrichment, eutrophication and metal contamination derived from fish farming were studied. The biofilm biomass, polysaccharide content, trophic niche and element accumulation were quantified along an environmental gradient of fish farm wastes in two seasons. Biofilm structure and trophic diversity was influenced by seasonality as well as by the fish farm waste load. Fish farming enhanced the accumulation of organic carbon, nutrients, selenium and metals by the biofilm community. The accumulation pattern of these elements was similar regardless of the structure and trophic niche of the community. This suggests that the biofilm communities can be considered a reliable tool for assessing dissolved aquaculture wastes. Due to the ubiquity of biofilms and its wide range of consumers, its role as a sink of dissolved wastes may have important implications for the transfer of aquaculture wastes to higher trophic levels in coastal systems.