Nitrification and denitrification rates of Everglades wetland soils along a phosphorus-impacted gradient

Implications of river reconnection on phosphorus cycling in coastal wetlands

Louisiana's coastal wetlands are experiencing some of the world's largest land loss rates. This problem is partly due to levees along the Mississippi River, isolating the river from the coastal basins. This disconnect prevents delivering of sediment and nutrients to the wetland-dominated coastal basins, where sediments would increase marsh accretion. Louisiana's Coastal Master Plan aims to reconnect the river with riparian areas through construction of a diversion. Baseline phosphorus (P) dynamics were determined before river reconnection and compared to an area with an unmanaged connection to the river. In Barataria Basin, the equilibrium P concentration (EPC) was lower in both the marsh (0.039 ± 0.015 mg L-1) and open water sediments (0.016 ± 0.008 mg L-1) than the concentration of soluble reactive phosphorus (SRP) in the Mississippi River (∼0.075 mg L-1). Additionally, total P was significantly higher in marsh soil (677 ± 183 mg P kg-1) compared to the open water sediments (503 ± 90 mg P kg-1). On average, the organic residual P fraction was the dominant individual P form, comprising 39 % (254 ± 78.2 mg P kg-1) of total phosphorus (TP) in marsh soil and 45 % (208 ± 65.9 mg P kg -1) of TP in open water sediments. The primary form of total P in the river sediment is the Fe/Al mineral fraction at 43 % (469 mg P kg -1). Consequently, river reconnection, the dominant form of soil P will shift to inorganic Fe/Al-bound P. This shift will likely increase the internal loading of P over time due to iron reduction, releasing newly deposited mineral-bound phosphorus into the water column In vegetated wetland areas, this river-sourced P can be taken up by algae and macrophytes, while in open water areas, there could be an increase in algal blooms in these newly river-reconnected coastal basins, changing the P dynamics.

Biogeochemical Cycles in Plant-Soil Systems: Significance for Agriculture, Interconnections, and Anthropogenic Disruptions

Biogeochemical cycles are fundamental to the functioning of plant-soil systems, driving the availability and transfer of essential nutrients (like carbon (C), nitrogen (N), phosphorus (P), and sulfur (S)) as well as beneficial elements (like silicon (Si)). These interconnected cycles regulate ecosystem productivity, biodiversity, and resilience, forming the basis of critical ecosystem services. This review explores the mechanisms and dynamics of biogeochemical C, N, P, S, and Si cycles, emphasizing their roles in nutrient/element cycling, plant growth, and soil health, especially in agricultural plant-soil systems. The coupling between these cycles, facilitated mainly by microbial communities, highlights the complexity of nutrient/element interactions and corresponding implications for ecosystem functioning and stability. Human activities including industrial agriculture, deforestation, and pollution disrupt the underlying natural processes leading to nutrient/element imbalances, soil degradation, and susceptibility to climate impacts. Technological advancements such as artificial intelligence, remote sensing, and real-time soil monitoring offer innovative solutions for studying and managing biogeochemical cycles. These tools enable precise nutrient/element management, identification of ecosystem vulnerabilities, and the development of sustainable practices. Despite significant progress, research gaps remain, particularly in understanding the interlinkages between biogeochemical cycles and their responses to global change. This review underscores the need for integrated approaches that combine interdisciplinary research, technological innovation, and sustainable land-use strategies to mitigate human-induced disruptions and enhance ecosystem resilience. By addressing these challenges, biogeochemical processes and corresponding critical ecosystem services can be safeguarded, ensuring the sustainability of plant-soil systems in the face of environmental change.

Rice-fish coculture without phosphorus addition improves paddy soil nitrogen availability by shaping ammonia-oxidizing archaea and bacteria in subtropical regions of South China

Rice-fish coculture (RFC), as a traditional agricultural strategy in China, can optimally utilize the scarce resource, especially in subtropical regions where phosphorus (P) deficiency limits agricultural production. However, ammonia-oxidizing archaea (AOA) and bacteria (AOB) are involved in the ammonia oxidation, but it remains uncertain whether their community compositions are related to the RFC combined with and without P addition that improves soil nitrogen (N) use efficiency. Here, a microcosm experiment was conducted to assess the impacts of RFC combined with and without inorganic P (0 and 50 mg P kg-1 as KH2PO4) addition on AOA and AOB community diversities, enzyme activities and N availability. The results showed that RFC significantly increased available N content without P addition compared with P addition. Moreover, RFC significantly increased urease activity and AOA shannon diversity, and reduced NAG activity and AOB shannon diversity without P addition, respectively. Higher diversity of AOA compared with that of AOB causes greater competition for resources and energy within their habitats, thereby resulting in lower network complexity. Our findings indicated that the abundances of AOA and AOB are influenced through the introduction of fish and/or P availability, of which AOB is linked to N availability. Overall, RFC could improve paddy soil N availability without P addition in subtropical region, which provides a scientific reference for promoting the practices that reduce N fertilizer application in RFC.

Rapid nitrification involving comammox and canonical Nitrospira at extreme pH in saline-alkaline lakes

Nitrite-oxidizing bacteria (NOB) catalyse the second nitrification step and are the main biological source of nitrate. The most diverse and widespread NOB genus is Nitrospira, which also contains complete ammonia oxidizers (comammox) that oxidize ammonia to nitrate. To date, little is known about the occurrence and biology of comammox and canonical nitrite oxidizing Nitrospira in extremely alkaline environments. Here, we studied the seasonal distribution and diversity, and the effect of short-term pH changes on comammox and canonical Nitrospira in sediments of two saline, highly alkaline lakes. We identified diverse canonical and comammox Nitrospira clade A-like phylotypes as the only detectable NOB during more than a year, suggesting their major importance for nitrification in these habitats. Gross nitrification rates measured in microcosm incubations were highest at pH 10 and considerably faster than reported for other natural, aquatic environments. Nitrification could be attributed to canonical and comammox Nitrospira and to Nitrososphaerales ammonia-oxidizing archaea. Furthermore, our data suggested that comammox Nitrospira contributed to ammonia oxidation at an extremely alkaline pH of 11. These results identify saline, highly alkaline lake sediments as environments of uniquely strong nitrification with novel comammox Nitrospira as key microbial players.

Elemental Stoichiometry (C, N, P) of Soil in the Wetland Critical Zone of Dongting Lake, China: Understanding Soil C, N and P Status at Greater Depth

Earth’s critical zone is defined as a plant–soil–water system, which covers a wide area and has a large vertical thickness, but the soil elemental stoichiometry characteristics of the critical zone at different depths are still unclear. In this study, the spatial distribution of soil carbon (C), nitrogen (N) and phosphorus (P) in the critical zone of a typical wetland in Dongting Lake, China, and their ecological chemometric characteristics were analyzed. The results indicated that: (1) the average C, N and P contents were 18.05, 0.86 and 0.52 g/kg, respectively, with a decreasing trend from the surface to the deeper layers. The soil is relatively rich in C and P, while N is the main element limiting plant growth and development. (2) The mean values of soil C/N, N/P and C/P were 21.1, 1.7 and 35.4 respectively, with the C/N ratio and C/P ratio showing a trend of increasing and then decreasing in the vertical direction and reaching a maximum at a depth of 2–5 m below ground. (3) According to the correlation results, C, N and P in soils are coupled and influenced by each other (p < 0.001), and pH, infiltration coefficient and human activities are closely related to the spatial distribution of C, N and P. (4) Stable Redfield ratios (1:1.6:35.4) may exist in lake wetland soils, and future studies should be conducted for complete systems of the same type of wetlands. The results of the study will provide a theoretical basis for the sustainable development and scientific management of lake wetlands.

Restoration impacts on rates of denitrification and greenhouse gas fluxes from tropical coastal wetlands

Forested coastal wetlands are globally important systems sequestering carbon and intercepting nitrogen pollution from nutrient-rich river systems. Coastal wetlands that have suffered extensive disturbance are the target of comprehensive restoration efforts. Accurate assessment of restoration success requires detailed mechanistic understanding of wetland soil biogeochemical functioning across restoration chrono-sequences, which remains poorly understood for these sparsely investigated systems. This study investigated denitrification and greenhouse gas fluxes in mangrove and Melaleuca forest soils of Vietnam, using the ¹⁵N-Gas flux method. Denitrification-derived N₂O was significantly higher from Melaleuca than mangrove forest soils, despite higher potential rates of total denitrification in the mangrove forest soils (8.1 ng N g^-1 h^-1) than the Melaleuca soils (6.8 ng N g^-1 h^-1). Potential N₂O and CO₂ emissions were significantly higher from the Melaleuca soils than from the mangrove soils. Disturbance and subsequent recovery had no significant effect on N biogeochemistry except with respect to the denitrification product ratio in the mangrove sites, which was highest from the youngest mangrove site. Potential CO₂ and CH₄ fluxes were significantly affected by restoration in the mangrove soils. The lowest potential CO₂ emissions were observed in the mid-age plantation and potential CH₄ fluxes decreased in the older forests. The mangrove system, therefore, may remove excess N and improve water quality with low greenhouse gas emissions, whereas in Melaleucas, increased N₂O and CO₂ emissions also occur. These emissions are likely balanced by higher carbon stocks observed in the Melaleuca soils. These mechanistic insights highlight the importance of ecosystem restoration for pollution attenuation and reduction of greenhouse gas emissions from coastal wetlands. Restoration efforts should continue to focus on increasing wetland area and function, which will benefit local communities with improved water quality and potential for income generation under future carbon trading.

Effects of Water Depth and Phosphorus Availability on Nitrogen Removal in Agricultural Wetlands

Excess nitrogen (N) from agricultural runoff is a cause of pollution in aquatic ecosystems. Created free water surface (FWS) wetlands can be used as buffering systems to lower the impacts of nutrients from agricultural runoff. The purpose of this paper was to evaluate critical factors for N removal in FWS wetlands receiving high nitrate (NO3−) loads from agriculture. The study was performed in 12 experimental FWS wetlands in southern Sweden, receiving drainage water from an agricultural field area. The effects of water depth (mean depth of 0.4 m and 0.6 m, respectively) and phosphorus (P) availability (with or without additional P load) were investigated from July to October. The experiment was performed in a two-way design, with three wetlands of each combination of depth and P availability. The effects of P availability on the removal of NO3− and total N were strongly significant, with higher absolute N removal rates per wetland area (g m−2 day−1) as well as temperature-adjusted first-order area-based removal rate coefficients (Kat) in wetlands with external P addition compared to wetlands with no addition. Further, higher N removal in deep compared to shallow wetlands was indicated by statistically significant differences in Kat. The results show that low P availability may limit N removal in wetlands receiving agricultural drainage water. Furthermore, the results support that not only wetland area but also wetland volume may be important for N removal. The results have implications for the planning, location, and design of created wetlands in agricultural areas.

The denitrification potential of eroding wetlands in Barataria Bay, LA, USA: Implications for river reconnection

Expressions of eutrophication have led to increased stress on coastal ecosystems around the world. The nitrogen (N) removal potential of coastal wetland ecosystems is important due to increased loading of N to the coast. In Louisiana, there is rapid coastal wetland loss due primarily to the presence of river levees, which have isolated the coastal basins, and a high relative sea level rise. Ecosystem managers are planning to construct the Mid-Barataria sediment diversion which will reconnect the Mississippi River with Barataria Basin to build new wetlands and nourish existing marsh. The sediment diversion will deliver large amounts of nitrate into the surface waters of Barataria Bay. This research sought to quantify the nitrate removal potential of three bay zones; vegetated marsh, submerged peat fringe, and bay-bottom muddy estuarine sediment in intact soil cores incubated with a 2 mg L^-1 N-NO₃ water column. We noted: i) The areal nitrate reduction rates for the marsh, fringe, and estuary zones were 29.29 ± 3.28, 18.83 ± 1.31, and 10.83 ± 0.62 mg N m^-2 day^-1, respectively; ii) the majority (~93%) of NO₃ was converted to N₂O, indicating denitrification was the major NO₃ reduction pathway; iii) the submerged, eroded marsh soils (peat fringe zone) will play a large role in nitrate reduction due to increased contact time with the surface water. These findings can inform the predictive numerical models produced and utilized by ecosystem managers to better quantitatively understand how the coastal basin will respond to nutrient loading from river reconnection. In a broader context, the current relative sea level rise in coastal Louisiana is within the range of eustatic sea level rise that most stable coastlines will experience within the next 65-85 years. Therefore, these findings can serve as an example of potential future impacts to coastal wetland systems, globally, within the next century.

Role of organic carbon, nitrate and ferrous iron on the partitioning between denitrification and DNRA in constructed stormwater urban wetlands

Denitrification (DNF) and dissimilatory nitrate reduction to ammonium (DNRA) are two competing nitrate reduction pathways that remove or recycle nitrogen, respectively. However, factors controlling the partitioning between these two pathways are manifold and our understanding of these factors is critical for the management of N loads in constructed wetlands. An important factor that controls DNRA in an aquatic ecosystem is the electron donor, commonly organic carbon (OC) or alternatively ferrous iron and sulfide. In this study, we investigated the role of natural organic carbon (NOC) and acetate at different OC/NO₃^- ratios and ferrous iron on the partitioning between DNF and DNRA using the ¹⁵N-tracer method in slurries from four constructed stormwater urban wetlands in Melbourne, Australia. The carbon and nitrate experiments revealed that DNF dominated at all OC/NO₃^- ratios. The higher DNF and DNRA rates observed after the addition of NOC indicates that nitrate reduction was enhanced more by NOC than acetate. Moreover, addition of NOC in slurries stimulated DNRA more than DNF. Interestingly, slurries amended with Fe²⁺ showed that Fe²⁺ had significant control on the balance between DNF and DNRA. From two out of four wetlands, a significant increase in DNRA rates (p < .05) at the cost of DNF in the presence of available Fe²⁺ suggests DNRA is coupled to Fe²⁺ oxidation. Rates of DNRA increased 1.5-3.5 times in the Fe²⁺ treatment compared to the control. Overall, our study provides direct evidence that DNRA is linked to Fe²⁺ oxidation in some wetland sediments and highlights the role of Fe²⁺ in controlling the partitioning between removal (DNF) and recycling (DNRA) of bioavailable N in stormwater urban constructed wetlands. In our study we also measured anammox and found that it was always <0.05% of total nitrate reduction in these sediments.

Differential Sensitivity of Wetland-Derived Nitrogen Cycling Microorganisms to Copper Nanoparticles

Metallic nanoparticles (NPs), the most abundant nanomaterials in consumer and industrial products, are the most probable class to enter the environment. In this study, wetland-derived microcosms were incubated with copper nanoparticles (Cu-NP) and ionic CuCl₂ to investigate acute (10 days) and chronic (100 days) exposure towards nitrogen cycling microorganisms. The microbial ecology of wetlands play a crucial role in balancing nitrogen in pristine environments as well as in areas impacted by high nutrient loads (e.g., at wastewater effluent discharges). Gene abundance and expression changes were monitored using the GeoChip 5.0 high throughput functional gene microarray and metatranscriptomic shotgun sequencing (RNA-seq), respectively. After 10 days, the Cu-NP impacted microbial communities experienced structural shifts within microorganisms associated with dissimilatory nitrogen reduction accompanied by lower nitrate removal as compared to the unexposed controls. By day 100, these differences were largely resolved and nitrate removal was similar to the unexposed control. Furthermore, the Cu-NP exposed microcosms tolerated copper and were more resilient and adaptive than the unexposed controls based on the abundance and expression of other functions, including electron transfer, metal homeostasis, and stress response. These findings suggest sudden influxes of Cu-NPs into wetland systems may impair nitrogen removal initially, but long-term microbial shifts and functional redundancy would promote the net flux of total nitrogen out of the wetlands.

Methanogens Are Major Contributors to Nitrogen Fixation in Soils of the Florida Everglades

The objective of this study was to investigate the interaction of the nitrogen (N) cycle with methane production in the Florida Everglades, a large freshwater wetland. This study provides an initial analysis of the distribution and expression of N-cycling genes in Water Conservation Area 2A (WCA-2A), a section of the marsh that underwent phosphorus (P) loading for many years due to runoff from upstream agricultural activities. The elevated P resulted in increased primary productivity and an N limitation in P-enriched areas. Results from quantitative real-time PCR (qPCR) analyses indicated that the N cycle in WCA-2A was dominated by nifH and nirK/S, with an increasing trend in copy numbers in P-impacted sites. Many nifH sequences (6 to 44% of the total) and nifH transcript sequences (2 to 49%) clustered with the methanogenic Euryarchaeota, in stark contrast to the proportion of core gene sequences representing Archaea (≤0.27% of SSU rRNA genes) for the WCA-2A microbiota. Notably, archaeal nifH gene transcripts were detected at all sites and comprised a significant proportion of total nifH transcripts obtained from the unimpacted site, indicating that methanogens are actively fixing N₂ Laboratory incubations with soils taken from WCA-2A produced nifH transcripts with the production of methane from H₂ plus CO₂ and acetate as electron donors and carbon sources. Methanogenic N₂ fixation is likely to be an important, although largely unrecognized, route through which fixed nitrogen enters the anoxic soils of the Everglades and may have significant relevance regarding methane production in wetlands.IMPORTANCE Wetlands are the most important natural sources of the greenhouse gas methane, and much of that methane emanates from (sub)tropical peatlands. Primary productivity in these peatlands is frequently limited by the availability of nitrogen or phosphorus; however, the response to nutrient limitations of microbial communities that control biogeochemical cycling critical to ecosystem function may be complex and may be associated with a range of processes, including methane production. We show that many, if not most, of the methanogens in the peatlands of the Florida Everglades possess the nifH gene and actively express it for N₂ fixation coupled with methanogenesis. These findings indicate that archaeal N₂ fixation would play crucial role in methane emissions and overall N cycle in subtropical wetlands suffering N limitation.

Nitrification in a soil-aquifer treatment system: comparison of potential nitrification and concentration profiles in the vadose zone

The oxidation of ammonium in the vadose zone of soil aquifer systems is discussed and examined by detailed analysis of the depth profiles of dissolved oxygen, nitrate and ammonium concentrations in the vadose zone of a soil-aquifer treatment (SAT) system of a municipal wastewater treatment system of the Tel Aviv metropolitan area. Nitrification kinetics and ammonium adsorption capacity studies show that neither the nitrification rate nor the ammonium adsorption capacity controls the capacity of the Shafdan SAT system for ammonium removal. Evaluation of the ammonium adsorption capacity of the soil reveals that under ideal conditions, a depth of less than 50 cm is sufficient to adsorb all the ammonium supplied in a flooding cycle. In-field studies show that all the ammonium is concentrated within the first 80 cm of the vadose zone. A depth profile of the Potential Nitrification (P.N), a measure of the local amount and activity of nitrifiers, is presented for the first time in the vadose zone of a SAT system showing that there are sufficient nitrifiers to oxidize all the ammonia that is supplied in a flooding cycle within less than 2 h, under optimal microbiological conditions based on the existing nitrifiers and their spatial distribution. The biodegradation rate in the field corresponds to first order ammonium conversion with a kinetic coefficient of 8.0 ± 0.2 d^-1. Accordingly, the average measured rate was 8.6 ± 5.8 mg NH₄⁺-N per kg per d for in-field tests, which can be compared to the average P.N, with a value of 34.5 ± 16.8 mg NH₄⁺-N per kg per d. The results suggest that a SAT design, taking into account full ammonium removal capacity, is feasible and can rely on the evaluation of the ammonium adsorption capacity in the SAT soil, the ammonium input and the P.N of the equilibrated target soil under conditions simulating the operation of the infiltrating basins.

Comparison of heterotrophic and autotrophic denitrification processes for treating nitrate-contaminated surface water

The goal of this study was to compare the nitrogen removal rate, effluent algal growth potential (AGP), nitrous oxide (N₂O) emissions and global warming potential (GWP) between two laboratory-scale bioreactors: the autotrophic denitrification biofilter (ADBF) and heterotrophic denitrification biofilter (HDBF) for treating nitrate-contaminated surface water. The comparative study of nitrogen removal rate between ADBF and HDBF was conducted by a long-term experiment, and the comparative study of the effluent AGP, N₂O emissions and GWP between ADBF and HDBF were carried out by the corresponding batch tests. The results show that the heterotrophic and autotrophic denitrification rates were close to each other. Besides, the AGP of the ADBF effluent was 2.08 times lower than that of the HDBF effluent, while the N₂O concentration in off-gas emitted from HDBF was 6-8 times higher than that from ADBF. The higher N₂O-N emission rate of HDBF was mainly responsible for the higher GWP of HDBF than that of ADBF. Furthermore, with a novel light-weight filtration media (NLWFM) for filtration, the autotrophic denitrification (ADN) process combined with biofilter process would be the optimal denitrification process for nitrogen removal from nitrate-contaminated surface water. The study also provided a systematic method for evaluation of biological nitrogen removal (BNR) process.

Surfactant-Modified Soil Amendments Reduce Nitrogen and Phosphorus Leaching in a Sand-Based Rootzone

United States Golf Association putting greens are susceptible to nitrogen (N) and phosphorus (P) leaching. Inorganic soil amendments are used to increase moisture and nutrient retention and may influence N and P leaching. This study was conducted to determine whether N and P leaching could be reduced using soil amendments and surfactant-modified soil amendments. Treatments included a control (sand), sand-peat, zeolite, calcined clay, hexadecyltrimethylammonium-zeolite, and hexadecyltrimethylammonium-calcined clay. Lysimeters were filled with a 30-cm rootzone layer of sand-peat (85:15 by volume), below which a 5-cm treatment layer of amendments was placed. A solution of NO-N, NH-N, and orthophosphate-P (2300, 2480, and 4400 μg mL, respectively) was injected at the top of each lysimeter, and leachate was collected using an autocollector set to collect a 10-mL sample every min until four pore volumes were collected. Uncoated amendments, sand, and peat had no influence on NO-N retention, whereas hexadecyltrimethylammonium-coated amendments reduced NO-N leaching to below detectable limits. Both coated and uncoated amendments reduced NH-N leaching, with zeolite reducing NH-N leached to near zero regardless of hexadecyltrimethylammonium coating. Pure sand resulted in a 13% reduction of applied orthophosphate-P leaching, whereas peat contributed to orthophosphate-P leaching. Surfactant-modified amendments reduced orthophosphate-P leaching by as much as 97%. Surfactant-modified soil amendments can reduce NO-N, NH-N, and orthophosphate-P leaching and, thus, may be a viable option for removing leached N and P before they enter surface or ground waters.

Negative effects of excessive soil phosphorus on floristic quality in Ohio wetlands

Excessive soil nutrients, often from agricultural runoff, have been shown to negatively impact some aspects of wetland plant communities. We measured plant-available phosphorus (Mehlich-3: MeP) in soil samples, and assessed the vascular plant community and habitat degradation at 27 emergent and 13 forested wetlands in Ohio, USA. We tested two hypotheses: (1) that an index of vegetation biological integrity based on floristic quality was lower in wetlands with higher concentrations of MeP in the soil, and (2) that higher concentrations of MeP occurred in wetlands with more habitat degradation (i.e., lower quality), as estimated by a rapid assessment method. Hypothesis (1) was supported for emergent, but not for forested wetlands. Hypothesis (2) was marginally supported (P=0.09) for emergent, but not supported for forested wetlands. The results indicate that the effect of concentration of phosphorus in wetland soils and the quality of plant species assemblages in wetlands is more complex than shown in site-specific studies and may depend in part on degree of disturbance in the surrounding watershed and dominant wetland vegetation type. Woody plants in forested wetlands are typically longer lived than herbaceous species in the understory and emergent wetlands, and may persist despite high inputs of phosphorus. Further, the forested wetlands were typically surrounded by a wide band of forest vegetation, which may provide a barrier against sedimentation and the associated phosphorus inputs to the wetland interior. Our results indicate that inferences about soil nutrient conditions made from rapid assessment methods for assessing wetland habitat condition may not be reliable.

Impacts of Long-Term Irrigation of Domestic Treated Wastewater on Soil Biogeochemistry and Bacterial Community Structure

Freshwater scarcity and regulations on wastewater disposal have necessitated the reuse of treated wastewater (TWW) for soil irrigation, which has several environmental and economic benefits. However, TWW irrigation can cause nutrient loading to the receiving environments. We assessed bacterial community structure and associated biogeochemical changes in soil plots irrigated with nitrate-rich TWW (referred to as pivots) for periods ranging from 13 to 30 years. Soil cores (0 to 40 cm) were collected in summer and winter from five irrigated pivots and three adjacently located nonirrigated plots. Total bacterial and denitrifier gene abundances were estimated by quantitative PCR (qPCR), and community structure was assessed by 454 massively parallel tag sequencing (MPTS) of small-subunit (SSU) rRNA genes along with terminal restriction fragment length polymorphism (T-RFLP) analysis of nirK, nirS, and nosZ functional genes responsible for denitrification of the TWW-associated nitrate. Soil physicochemical analyses showed that, regardless of the seasons, pH and moisture contents (MC) were higher in the irrigated (IR) pivots than in the nonirrigated (NIR) plots; organic matter (OM) and microbial biomass carbon (MBC) were higher as a function of season but not of irrigation treatment. MPTS analysis showed that TWW loading resulted in the following: (i) an increase in the relative abundance of Proteobacteria, especially Betaproteobacteria and Gammaproteobacteria; (ii) a decrease in the relative abundance of Actinobacteria; (iii) shifts in the communities of acidobacterial groups, along with a shift in the nirK and nirS denitrifier guilds as shown by T-RFLP analysis. Additionally, bacterial biomass estimated by genus/group-specific real-time qPCR analyses revealed that higher numbers of total bacteria, Acidobacteria, Actinobacteria, Alphaproteobacteria, and the nirS denitrifier guilds were present in the IR pivots than in the NIR plots. Identification of the nirK-containing microbiota as a proxy for the denitrifier community indicated that bacteria belonged to alphaproteobacteria from the Rhizobiaceae family within the agroecosystem studied. Multivariate statistical analyses further confirmed some of the above soil physicochemical and bacterial community structure changes as a function of long-term TWW application within this agroecosystem.

Projecting changes in Everglades soil biogeochemistry for carbon and other key elements, to possible 2060 climate and hydrologic scenarios

Based on previously published studies of elemental cycling in Everglades soils, we projected how soil biogeochemistry, specifically carbon, nitrogen, phosphorus, sulfur, and mercury might respond to climate change scenarios projected for 2060 by the South Florida Water Management Model. Water budgets and stage hydrographs from this model with future scenarios of a 10% increased or decreased rainfall, a 1.5 °C rise in temperature and associated increase in evapotranspiration (ET) and a 0.5 m rise in sea level were used to predict resulting effects on soil biogeochemistry. Precipitation is a much stronger driver of soil biogeochemical processes than temperature, because of links among water cover, redox conditions, and organic carbon accumulation in soils. Under the 10% reduced rainfall scenario, large portions of the Everglades will experience dry down, organic soil oxidation, and shifts in soil redox that may dramatically alter biogeochemical processes. Lowering organic soil surface elevation may make portions of the Everglades more vulnerable to sea level rise. The 10% increased rainfall scenario, while potentially increasing phosphorus, sulfur, and mercury loading to the ecosystem, would maintain organic soil integrity and redox conditions conducive to normal wetland biogeochemical element cycling. Effects of increased ET will be similar to those of decreased precipitation. Temperature increases would have the effect of increasing microbial processes driving biogeochemical element cycling, but the effect would be much less than that of precipitation. The combined effects of decreased rainfall and increased ET suggest catastrophic losses in carbon- and organic-associated elements throughout the peat-based Everglades.

Effects of dispersant used for oil spill remediation on nitrogen cycling in Louisiana coastal salt marsh soil

On April 20, 2010, the BP Deepwater Horizon (DWH) offshore oil platform experienced an explosion which triggered the largest marine oil spill in US history. Approximately 7.9 million liters of dispersant, Corexit EC9500A, was used during the spill between May 15th and July 12th. Marsh soil samples were collected from an unimpacted marsh site proximal to coastal areas that suffered light to heavy oiling for a laboratory evaluation to determine the effect of Corexit on the wetland soil microbial biomass as well as N-mineralization and denitrification rates. Microbial biomass nitrogen (N) values were below detection for the 1:10, 1:100 and 1:1000 Corexit:wet soil treatments. The potentially mineralizable N (PMN) rate correlated with microbial biomass with significantly lower rates for the 1:10 and 1:100 Corexit:wet soil additions. Potential denitrification rates for Corexit:wet soil ratios after immediate dispersant exposure were below detection for the 1:10 treatment, while the 1:100 was 7.6±2.7% of the control and the 1:1000 was 33±4.3% of the control. The 1:10000 treatment was not significantly different from the control. Denitrification rates measured after 2 weeks exposure to the surfactant found the 1:10 treatment still below detection limit and the 1:100 ratio was 12±2.6% of the control. Results from this lab study suggest that chemical dispersants have the potential to negatively affect the wetland soil microbial biomass and resultant microbial activity. Consequences of exposure led to reductions in several important microbial-regulated ecosystem services including water quality improvement (denitrification) and ecosystem primary productivity (N-mineralization). Future studies should investigate the longer-term impacts of dispersant exposure on the microbial consortia to determine if microbial activity recovers over time.

Denitrification potential and its correlation to physico-chemical and biological characteristics of saline wetland soils in semi-arid regions

Denitrification is an important pathway of NO(3)(-) removal depending on wetland soil characteristics. Most studies on denitrification have been conducted in the freshwater wetlands and coastal marshes, but little information is available on how soil and environmental factors affect denitrification of saline wetlands in semi-arid regions. We conducted a correlative study on denitrification potential in relation to the physico-chemical and biological characteristics. Composite soil samples of different depths were collected from different halophyte communities along a saline-impact gradient around Wuliangsuhai Lake, i.e. Comm. Salicornia europaea (CSE), Comm. Suaeda glauca (CSG), Comm. Kalidium foliatum (CKF) and Comm. Sophora alopecuroides (CSA). The CSA soil profile showed the fastest denitrification kinetics and tended to yield the largest amount of N(2)O, followed by the CKF, CSG and CSE. The mean of potential denitrification rates was the highest across all depths of the CSA soil profile, followed by the CKF, CSG, and CSE. Principal component analysis indicated that exchangeable sodium percentage was a key factor to denitrification potential, apart from organic carbon, nitrate and denitrifying bacteria. The results could have significant implication in integrated assessment and management of salined wetlands for treating nutrient-rich return water from farmland, industrial wastewater and domestic sewage in the diverted trunk drain used for the lakeshore restoration.

Nitrate flux into the sediments of a shallow oligohaline estuary during large flood pulses of Mississippi River water

Lake Pontchartrain is a large, oligohaline estuary located in coastal Louisiana that receives episodic diversions of nitrogen-rich Mississippi River water via the Bonnet Carré Spillway to alleviate flood threats to the city of New Orleans. These events may be linked to expressions of eutrophication, and it is therefore important to investigate pathways of nitrate (NO) loss. Nitrate flux into the sediments of Lake Pontchartrain was investigated using two independent methods: (i) simulating high NO flood events under aerobic and anaerobic incubations in intact sediment cores collected during 2010 and (ii) in situ field measurements of the vertical profiles of dissolved inorganic nitrogen species at the sediment-water interface during the 2011 Bonnet Carré Spillway opening. Mean rates of NO flux into sediments based on mass transfer in intact cores collected in 2010 and in situ porewater measurements in 2011 were -17.4 and -1.4 mg NO-N m d, respectively, for water column NO concentrations observed in situ in 2011. During the laboratory incubations, there was no significant difference in NO flux between oxygen treatments. We estimate that NO flux into sediments accounted for up to 3.1% (309 Mg NO-N) of water column NO loss during the 2008 Bonnet Carré Spillway event. Sediment characteristics, field measurements, and results from the laboratory experiment suggest that denitrification is the primary pathway for NO reduction. Even though there is significant NO reduction occurring in Lake Pontchartrain sediments during Mississippi River diversion events, this pathway of NO loss from the water column plays a relatively minor role in the transformation of the very large amount of NO received during these times.

Assessing nitrification and denitrification in a paddy soil with different water dynamics and applied liquid cattle waste using the ¹⁵N isotopic technique

Using livestock wastewater for rice production in paddy fields can remove nitrogen and supplement the use of chemical fertilizers. However, paddy fields have complicated water dynamics owing to varying characteristics and would influence nitrogen removal through nitrification followed by denitrification. Quantification of nitrification and denitrification is of great importance in assessing the influence of water dynamics on nitrogen removal in paddy fields. In this study, nitrification and nitrate reduction rates with different water dynamics after liquid cattle waste application were evaluated, and the in situ denitrification rate was determined directly using the (15)N isotopic technique in a laboratory experiment. A significant linear regression correlation between nitrification and the nitrate reduction rate was observed and showed different regression coefficients under different water dynamics. The regression coefficient in the continuously flooded paddy soil was higher than in the drained-reflooded paddy soil, suggesting that nitrate would be consumed faster in the flooded paddy soil. However, nitrification was limited and the maximum rate was only 13.3 μg Ng(-1)day(-1) in the flooded paddy soil with rice plants, which limited the supply of nitrate. In contrast, the drained-reflooded paddy soil had an enhanced nitrification rate up to 56.8 μg Ng(-1)day(-1), which was four times higher than the flooded paddy soil and further stimulated nitrate reduction rates. Correspondingly, the in situ denitrification rates determined directly in the drained-reflooded paddy soil ranged from 5 to 1035 mg Nm(-2)day(-1), which was higher than the continuously flooded paddy soil (from 5 to 318 mg Nm(-2)day(-1)) during the vegetation period. The nitrogen removal through denitrification accounted for 38.9% and 9.9% of applied nitrogen in the drained-reflooded paddy soil and continuously flooded paddy soil, respectively.

Effects of salinity on the microbial removal of nitrate under varying nitrogen inputs within the marshland upwelling system

The marshland upwelling system (MUS) utilizes the natural properties of wetland soils to treat domestic wastewater injected into the marsh subsurface as the wastewater moves upwards and outwards from the injection site. The system is different from coarse media based wetland treatment systems common in Europe, though it relies on the same principles. A laboratory study was designed to simulate field conditions in order to investigate and quantify the removal of nitrogen from the wastewater by pumping wastewater into the bottom of cores and observing the changes as the wastewater moved upward to the surface. Two nitrogen treatments (100 mg NH(4)-N L(-1) and 80 mg NH(4)-N L(-1)/20 mg NO(3)-N L(-1)) and two salinities (2 and 20‰) for each N treatment were studied. Dissolved organic carbon (DOC) demonstrated a removal efficiency of 90%, while NO(3)-N had a removal efficiency of > 99% throughout the 84 days of the study. Higher salinity had a temporary, significant lower removal of DOC, while nitrate removal was high and consistent over time. Microbial biomass C (MBC) and denitrification enzyme activity (DEA) were measured to determine the role of microbial processes within the MUS. Wastewater introduction increased microbial growth at the column surface, which led to increases in denitrification/nitrification coupling and net N loss, as estimated by DEA. Salinity and organic matter were found to have significant negative and positive impacts, respectively, on DEA rates and MBC. An understanding of the impacts of salinity on specific microbially-mediated N transformations is critical for improving the efficiency of the MUS in coastal environments to determine the long-term sustainability.

Ammonia oxidation, denitrification and dissimilatory nitrate reduction to ammonium in two US Great Basin hot springs with abundant ammonia-oxidizing archaea

Many thermophiles catalyse free energy-yielding redox reactions involving nitrogenous compounds; however, little is known about these processes in natural thermal environments. Rates of ammonia oxidation, denitrification and dissimilatory nitrate reduction to ammonium (DNRA) were measured in source water and sediments of two ≈ 80°C springs in the US Great Basin. Ammonia oxidation and denitrification occurred mainly in sediments. Ammonia oxidation rates measured using (15)N-NO(3)(-) pool dilution ranged from 5.5 ± 0.8 to 8.6 ± 0.9 nmol N g(-1) h(-1) and were unaffected or only mildly stimulated by amendment with NH(4) Cl. Denitrification rates measured using acetylene block ranged from 15.8 ± 0.7 to 51 ± 12 nmol N g(-1) h(-1) and were stimulated by amendment with NO(3)(-) and complex organic compounds. The DNRA rate in one spring sediment measured using an (15)N-NO(3)(-) tracer was 315 ± 48 nmol N g(-1) h(-1). Both springs harboured distinct planktonic and sediment microbial communities. Close relatives of the autotrophic, ammonia-oxidizing archaeon 'Candidatus Nitrosocaldus yellowstonii' represented the most abundant OTU in both spring sediments by 16S rRNA gene pyrotag analysis. Quantitative PCR (qPCR) indicated that 'Ca. N. yellowstonii'amoA and 16S rRNA genes were present at 3.5-3.9 × 10(8) and 6.4-9.0 × 10(8) copies g(-1) sediment. Potential denitrifiers included members of the Aquificales and Thermales. Thermus spp. comprised <1% of 16S rRNA gene pyrotags in both sediments and qPCR for T. thermophilus narG revealed sediment populations of 1.3-1.7 × 10(6) copies g(-1) sediment. These data indicate a highly active nitrogen cycle (N-cycle) in these springs and suggest that ammonia oxidation may be a major source of energy fuelling primary production.

Alum application to improve water quality in a municipal wastewater treatment wetland

Nutrient removal in treatment wetlands declines during winter months due to temperature. A 3-mo (wintertime) mesocosm study was conducted to determine the effectiveness of alum in immobilizing P as well as other nutrients during this period of reduced treatment efficiency. Eighteen mesocosms, triplicate alum, and three controls or no alum were established with either Typha spp., Schoenoplectus californicus, or SAV (Najas guadalupensis-dominated). Alum was delivered by timer at a rate of 0.81 g Al m(-2) d(-1) and parameters measured included: pH, soluble reactive phosphorus (SRP), total phosphorus (TP), dissolved organic carbon (DOC), dissolved inorganic nitrogen (DIN), total kjeldahl nitrogen (TKN), and soluble aluminum (Al). Alum-treated mesocosms had significantly lower pH values (8.1) than controls (8.8), but well within the elevated pH range for aluminum toxicity. Alum significantly reduced all measured water column nutrients with the exception of ammonium N, which remained unaffected, and particulate P, which increased. This study demonstrated that seasonal low-dosage alum application to different vegetation communities in a treatment wetland can significantly improve treatment efficiencies for SRP (87 vs. 58%) and TP (62 vs. 44%) but also increase DOC (19 vs. 0%) and TKN (12 vs. -3%) removal capacity to a lesser degree. Alum applications within close proximity of the treatment wetland effluent points should be implemented with caution due to the production of alum floc-bound P which could potentially affect discharge permit compliance for total suspended solids or total P.

The short-term effects of prescribed burning on biomass removal and the release of nitrogen and phosphorus in a treatment wetland

Nutrient removal by constructed wetlands can decline over time due to the accumulation of organic matter. A prescribed burn is one of many management strategies used to remove detritus in macrophyte-dominated systems. We quantified the short-term effects on effluent water quality and the amount of aboveground detritus removed from a prescribed burn event. Surface water outflow concentrations were approximately three times higher for P and 1.5 times higher for total Kjeldhal nitrogen (TKN) following the burn event when compared to the control. The length of time over which the fire effect was significant (P < 0.05), 3 d for TKN and up to 23 d for P fractions. Over time, the concentration of soluble reactive phosphorus (SRP) in the effluent decreased, but was compensated with increases in dissolved organic phosphorus (DOP) and particulate phosphorus (PP), such that net total P remained the same. Total aboveground biomass decreased by 68.5% as a result of the burn, however, much of the live vegetation was converted to standing dead material. These results demonstrate that a prescribed burn can significantly decrease the amount of senescent organic matter in a constructed wetland. However, short-term nutrient releases following the burn could increase effluent nutrient concentrations. Therefore, management strategies should include hydraulically isolating the burned area immediately following the burn event to prevent nutrient export.

Genetic and functional variation in denitrifier populations along a short-term restoration chronosequence

Complete removal of plants and soil to exposed bedrock, in order to eradicate the Hole-in-the-Donut (HID) region of the Everglades National Park, FL, of exotic invasive plants, presented the opportunity to monitor the redevelopment of soil and the associated microbial communities along a short-term restoration chronosequence. Sampling plots were established for sites restored in 1989, 1997, 2000, 2001, and 2003. The goal of this study was to characterize the activity and diversity of denitrifying bacterial populations in developing HID soils in an effort to understand changes in nitrogen (N) cycling during short-term primary succession. Denitrifying enzyme activity (DEA) was detected in soils from all sites, indicating a potential for N loss via denitrification. However, no correlation between DEA and time since disturbance was observed. Diversity of bacterial denitrifiers in soils was characterized by sequence analysis of nitrite reductase genes (nirK and nirS) in DNA extracts from soils ranging in nitrate concentrations from 1.8 to 7.8 mg kg(-1). High levels of diversity were observed in both nirK and nirS clone libraries. Statistical analyses of clone libraries suggest a different response of nirS- and nirK-type denitrifiers to factors associated with soil redevelopment. nirS populations demonstrated a linear pattern of succession, with individual lineages represented at each site, while multiple levels of analysis suggest nirK populations respond in a grouped pattern. These findings suggest that nirK communities are more sensitive than nirS communities to environmental gradients in these soils.

Soil biogeochemical characteristics influenced by alum application in a municipal wastewater treatment wetland

Constructed treatment wetlands are a relatively low-cost alternative used for tertiary treatment of wastewater. Phosphorus (P) removal capacity of these wetlands may decline, however, as P is released from the accrued organic soils. Little research has been done on methods to restore the treatment capacity of aging constructed wetlands. One possibility is the seasonal addition of alum during periods of low productivity and nutrient removal. Our 3-mo mesocosm study investigated the effectiveness of alum in immobilizing P during periods of reduced treatment efficiency, as well as the effects on soil biogeochemistry. Eighteen mesocosms were established, triplicate experimental and control units for Typha sp., Schoenoplectus californicus, and submerged aquatic vegetation (SAV) (Najas guadalupensis dominated). Alum was slowly dripped to the water column of the experimental units at a rate of 0.91 g Al m(-2) d(-1) and water quality parameters were monitored. Soil cores were collected at experiment initiation and completion and sectioned into 0- to 5- and 5- to 10-cm intervals for characterization. The alum floc remained in the 0- to 5-cm surface soil, however, soil pH and microbial parameters were impacted throughout the upper 10 cm with the lowest pH found in the Typha treatment. Plant type did not impact most biogeochemical parameters; however, data were more variable in the SAV mesocosms. Amorphous Al was greater in the surface soil of alum-treated mesocosms, inversely correlated with soil pH and microbial biomass P in both soil layers. Microbial activity was also suppressed in the surface soil of alum-treated mesocosms. This research suggests alum may significantly affect the biogeochemistry of treatment wetlands and needs further investigation.

Increased soil stable nitrogen isotopic ratio following phosphorus enrichment: historical patterns and tests of two hypotheses in a phosphorus-limited wetland

We used a P enrichment gradient in the Everglades to investigate patterns of the stable N isotopic ratio (delta(15)N) in peat profiles as an indicator of historic eutrophication of this wetland. We also tested two hypotheses to explain the effects of P on increased delta(15)N of organic matter including: (1) increased N mineralization/N loss, and (2) reduced isotopic discrimination during macrophyte N uptake. Spatial patterns of delta(15)N in surface litter and soil (0-10 cm) mimic those of the aboveground macrophytes (Typha domingensis Pers. and Cladium jamaicense Crantz). Peat profiles also show increased delta(15)N in the peat accumulated in areas near the historic P discharges since the early 1960s. The increased delta(15)N of bulk peat correlated well with both measured increases in soil total P and the historical beginning of nutrient discharges into this wetland. In 15-day bottle incubations of soil, added P had no effect on the delta(15)N of NH (4) (+) and significantly increased the delta(15)N of water-extractable organic N. Measurements of surface soils collected during a field mesocosm experiment also revealed no significant effect of P on delta(15)N even after 5 years of P addition. In contrast, delta(15)N of leaf and root tissues of hydroponically grown Typha and Cladium were shown to increase up to 12 per thousand when grown at elevated levels of P and fixed levels of N (as NH (4) (+) ). The magnitude of changes in delta(15)N resulting from altered discrimination during N uptake is significant compared with other mechanisms affecting plant delta(15)N, and suggests that this may be the dominant mechanism affecting delta(15)N of organic matter following P enrichment. The results of this study have implications for the interpretation of delta(15)N as an indicator of shifts in relative N limitation in wetland ecosystems, and also stress the importance of experimental validation in interpreting delta(15)N patterns.

Effects of sedimentation on soil nutrient dynamics in riparian forests

The influence of sedimentation rates on biogeochemistry of riparian forests was studied near ephemeral streams at Fort Benning, GA. Upper reaches of seven ephemeral streams had received varying rates of sedimentation stemming from erosion along unpaved roadways at the military installation. Two reference catchments were also included in the study. Decomposition of foliar litter, microbial C and N, N mineralization, and arthropod populations were compared within and among catchments. Rates of sedimentation over the past 25 yr ranged from 0 in references to 4.0 cm yr(-1). Decomposition rates declined exponentially with sedimentation rates as low as 0.20 to 0.32 cm yr(-1) and appeared to reach an equilibrium at a sedimentation rate of 0.5 cm yr(-1). Nitrogen mineralization and microbial C and N followed the same trend. Sedimentation had no discernible effect on arthropod populations. These data suggest that biogeochemical cycles may be altered by sedimentation rates that commonly occur in some floodplain forests.