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For: Sugawara T, Kaneko K. Chemophoresis as a driving force for intracellular organization: Theory and application to plasmid partitioning. Biophysics (Nagoya-shi) 2011;7:77-88. [PMID: 27857595 PMCID: PMC5036777 DOI: 10.2142/biophysics.7.77] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2011] [Accepted: 09/08/2011] [Indexed: 01/06/2023]  Open
Number Cited by Other Article(s)
1
Köhler R, Murray SM. Plasmid partitioning driven by collective migration of ParA between nucleoid lobes. Proc Natl Acad Sci U S A 2024;121:e2319205121. [PMID: 38652748 PMCID: PMC11067062 DOI: 10.1073/pnas.2319205121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Accepted: 03/27/2024] [Indexed: 04/25/2024]  Open
2
Ren Z, Takacs CN, Brandão HB, Jacobs-Wagner C, Wang X. Organization and replicon interactions within the highly segmented genome of Borrelia burgdorferi. PLoS Genet 2023;19:e1010857. [PMID: 37494383 PMCID: PMC10406323 DOI: 10.1371/journal.pgen.1010857] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2023] [Revised: 08/07/2023] [Accepted: 07/05/2023] [Indexed: 07/28/2023]  Open
3
Ren Z, Takacs CN, Brandão HB, Jacobs-Wagner C, Wang X. Organization and replicon interactions within the highly segmented genome of Borrelia burgdorferi. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.03.19.532819. [PMID: 37066390 PMCID: PMC10103936 DOI: 10.1101/2023.03.19.532819] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 04/22/2023]
4
Takacs CN, Wachter J, Xiang Y, Ren Z, Karaboja X, Scott M, Stoner MR, Irnov I, Jannetty N, Rosa PA, Wang X, Jacobs-Wagner C. Polyploidy, regular patterning of genome copies, and unusual control of DNA partitioning in the Lyme disease spirochete. Nat Commun 2022;13:7173. [PMID: 36450725 PMCID: PMC9712426 DOI: 10.1038/s41467-022-34876-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Accepted: 11/09/2022] [Indexed: 12/03/2022]  Open
5
Köhler R, Kaganovitch E, Murray SM. High-throughput imaging and quantitative analysis uncovers the nature of plasmid positioning by ParABS. eLife 2022;11:78743. [PMID: 36374535 PMCID: PMC9662831 DOI: 10.7554/elife.78743] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Accepted: 10/23/2022] [Indexed: 11/16/2022]  Open
6
Blanchard AT, Piranej S, Pan V, Salaita K. Adhesive Dynamics Simulations of Highly Polyvalent DNA Motors. J Phys Chem B 2022;126:7495-7509. [PMID: 36137248 DOI: 10.1021/acs.jpcb.2c01897] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
7
Volante A, Alonso JC, Mizuuchi K. Distinct architectural requirements for the parS centromeric sequence of the pSM19035 plasmid partition machinery. eLife 2022;11:79480. [PMID: 36062913 PMCID: PMC9499535 DOI: 10.7554/elife.79480] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Accepted: 09/02/2022] [Indexed: 11/29/2022]  Open
8
Sugawara T, Kaneko K. Chemophoresis engine: A general mechanism of ATPase-driven cargo transport. PLoS Comput Biol 2022;18:e1010324. [PMID: 35877681 PMCID: PMC9363008 DOI: 10.1371/journal.pcbi.1010324] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2021] [Revised: 08/09/2022] [Accepted: 06/23/2022] [Indexed: 11/18/2022]  Open
9
Hanauer C, Bergeler S, Frey E, Broedersz CP. Theory of Active Intracellular Transport by DNA Relaying. PHYSICAL REVIEW LETTERS 2021;127:138101. [PMID: 34623846 DOI: 10.1103/physrevlett.127.138101] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2021] [Accepted: 08/12/2021] [Indexed: 06/13/2023]
10
Taylor JA, Seol Y, Budhathoki J, Neuman KC, Mizuuchi K. CTP and parS coordinate ParB partition complex dynamics and ParA-ATPase activation for ParABS-mediated DNA partitioning. eLife 2021;10:65651. [PMID: 34286695 PMCID: PMC8357417 DOI: 10.7554/elife.65651] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Accepted: 07/20/2021] [Indexed: 11/13/2022]  Open
11
Taylor JA, Seol Y, Budhathoki J, Neuman KC, Mizuuchi K. CTP and parS coordinate ParB partition complex dynamics and ParA-ATPase activation for ParABS-mediated DNA partitioning. eLife 2021;10:65651. [PMID: 34286695 DOI: 10.1101/2021.01.24.427996] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Accepted: 07/20/2021] [Indexed: 05/25/2023]  Open
12
Blanchard AT. Burnt bridge ratchet motor force scales linearly with polyvalency: a computational study. SOFT MATTER 2021;17:6056-6062. [PMID: 34151336 DOI: 10.1039/d1sm00676b] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
13
Subramanian S, Murray SM. Pattern selection in reaction diffusion systems. Phys Rev E 2021;103:012215. [PMID: 33601645 DOI: 10.1103/physreve.103.012215] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Accepted: 01/07/2021] [Indexed: 11/07/2022]
14
Physical Views on ParABS-Mediated DNA Segregation. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2020;1267:45-58. [PMID: 32894476 DOI: 10.1007/978-3-030-46886-6_3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
15
Kisner JR, Kuwada NJ. Nucleoid-mediated positioning and transport in bacteria. Curr Genet 2019;66:279-291. [PMID: 31691024 DOI: 10.1007/s00294-019-01041-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2019] [Revised: 10/21/2019] [Accepted: 10/23/2019] [Indexed: 12/28/2022]
16
Ramm B, Heermann T, Schwille P. The E. coli MinCDE system in the regulation of protein patterns and gradients. Cell Mol Life Sci 2019;76:4245-4273. [PMID: 31317204 PMCID: PMC6803595 DOI: 10.1007/s00018-019-03218-x] [Citation(s) in RCA: 68] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2019] [Revised: 06/27/2019] [Accepted: 07/02/2019] [Indexed: 12/22/2022]
17
Mura F, Gradziuk G, Broedersz CP. Mesoscopic non-equilibrium measures can reveal intrinsic features of the active driving. SOFT MATTER 2019;15:8067-8076. [PMID: 31576897 DOI: 10.1039/c9sm01169b] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
18
Blanchard AT, Bazrafshan AS, Yi J, Eisman JT, Yehl KM, Bian T, Mugler A, Salaita K. Highly Polyvalent DNA Motors Generate 100+ pN of Force via Autochemophoresis. NANO LETTERS 2019;19:6977-6986. [PMID: 31402671 DOI: 10.1021/acs.nanolett.9b02311] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
19
Weber PM, Moessel F, Paredes GF, Viehboeck T, Vischer NO, Bulgheresi S. A Bidimensional Segregation Mode Maintains Symbiont Chromosome Orientation toward Its Host. Curr Biol 2019;29:3018-3028.e4. [DOI: 10.1016/j.cub.2019.07.064] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2019] [Revised: 06/24/2019] [Accepted: 07/22/2019] [Indexed: 11/24/2022]
20
Hofmann A, Mäkelä J, Sherratt DJ, Heermann D, Murray SM. Self-organised segregation of bacterial chromosomal origins. eLife 2019;8:e46564. [PMID: 31397672 PMCID: PMC6701925 DOI: 10.7554/elife.46564] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Accepted: 08/09/2019] [Indexed: 01/12/2023]  Open
21
Halatek J, Brauns F, Frey E. Self-organization principles of intracellular pattern formation. Philos Trans R Soc Lond B Biol Sci 2019;373:rstb.2017.0107. [PMID: 29632261 PMCID: PMC5904295 DOI: 10.1098/rstb.2017.0107] [Citation(s) in RCA: 86] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/09/2018] [Indexed: 11/13/2022]  Open
22
Hürtgen D, Murray SM, Mascarenhas J, Sourjik V. DNA Segregation in Natural and Synthetic Minimal Systems. ACTA ACUST UNITED AC 2019;3:e1800316. [DOI: 10.1002/adbi.201800316] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2018] [Revised: 01/18/2019] [Indexed: 11/08/2022]
23
Subcellular Organization: A Critical Feature of Bacterial Cell Replication. Cell 2019. [PMID: 29522747 DOI: 10.1016/j.cell.2018.01.014] [Citation(s) in RCA: 111] [Impact Index Per Article: 18.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
24
Murray SM, Howard M. Center Finding in E. coli and the Role of Mathematical Modeling: Past, Present and Future. J Mol Biol 2019;431:928-938. [PMID: 30664868 DOI: 10.1016/j.jmb.2019.01.017] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2018] [Revised: 01/09/2019] [Accepted: 01/14/2019] [Indexed: 10/27/2022]
25
Bergeler S, Frey E. Regulation of Pom cluster dynamics in Myxococcus xanthus. PLoS Comput Biol 2018;14:e1006358. [PMID: 30102692 PMCID: PMC6107250 DOI: 10.1371/journal.pcbi.1006358] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2018] [Revised: 08/23/2018] [Accepted: 07/11/2018] [Indexed: 11/18/2022]  Open
26
Walter JC, Dorignac J, Lorman V, Rech J, Bouet JY, Nollmann M, Palmeri J, Parmeggiani A, Geniet F. Surfing on Protein Waves: Proteophoresis as a Mechanism for Bacterial Genome Partitioning. PHYSICAL REVIEW LETTERS 2017;119:028101. [PMID: 28753349 DOI: 10.1103/physrevlett.119.028101] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2016] [Indexed: 05/11/2023]
27
Hu L, Vecchiarelli AG, Mizuuchi K, Neuman KC, Liu J. Brownian ratchet mechanisms of ParA-mediated partitioning. Plasmid 2017;92:12-16. [PMID: 28529035 PMCID: PMC5568458 DOI: 10.1016/j.plasmid.2017.05.002] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2017] [Revised: 05/16/2017] [Accepted: 05/17/2017] [Indexed: 11/16/2022]
28
Hu L, Vecchiarelli AG, Mizuuchi K, Neuman KC, Liu J. Brownian Ratchet Mechanism for Faithful Segregation of Low-Copy-Number Plasmids. Biophys J 2017;112:1489-1502. [PMID: 28402891 PMCID: PMC5390091 DOI: 10.1016/j.bpj.2017.02.039] [Citation(s) in RCA: 49] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2016] [Revised: 02/19/2017] [Accepted: 02/28/2017] [Indexed: 11/16/2022]  Open
29
Surovtsev IV, Campos M, Jacobs-Wagner C. DNA-relay mechanism is sufficient to explain ParA-dependent intracellular transport and patterning of single and multiple cargos. Proc Natl Acad Sci U S A 2016;113:E7268-E7276. [PMID: 27799522 PMCID: PMC5135302 DOI: 10.1073/pnas.1616118113] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
30
Banigan EJ, Marko JF. Self-propulsion and interactions of catalytic particles in a chemically active medium. Phys Rev E 2016;93:012611. [PMID: 26871126 DOI: 10.1103/physreve.93.012611] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2015] [Indexed: 11/07/2022]
31
Jindal L, Emberly E. Operational Principles for the Dynamics of the In Vitro ParA-ParB System. PLoS Comput Biol 2015;11:e1004651. [PMID: 26670738 PMCID: PMC4699459 DOI: 10.1371/journal.pcbi.1004651] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2015] [Accepted: 11/10/2015] [Indexed: 11/18/2022]  Open
32
Directed and persistent movement arises from mechanochemistry of the ParA/ParB system. Proc Natl Acad Sci U S A 2015;112:E7055-64. [PMID: 26647183 DOI: 10.1073/pnas.1505147112] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
33
Vecchiarelli AG, Seol Y, Neuman KC, Mizuuchi K. A moving ParA gradient on the nucleoid directs subcellular cargo transport via a chemophoresis force. BIOARCHITECTURE 2015;4:154-9. [PMID: 25759913 PMCID: PMC4914017 DOI: 10.4161/19490992.2014.987581] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
34
Lampo TJ, Kuwada NJ, Wiggins PA, Spakowitz AJ. Physical modeling of chromosome segregation in escherichia coli reveals impact of force and DNA relaxation. Biophys J 2015;108:146-53. [PMID: 25564861 DOI: 10.1016/j.bpj.2014.10.074] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2014] [Revised: 10/15/2014] [Accepted: 10/23/2014] [Indexed: 12/20/2022]  Open
35
Ietswaart R, Szardenings F, Gerdes K, Howard M. Competing ParA structures space bacterial plasmids equally over the nucleoid. PLoS Comput Biol 2014;10:e1004009. [PMID: 25521716 PMCID: PMC4270457 DOI: 10.1371/journal.pcbi.1004009] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2014] [Accepted: 10/28/2014] [Indexed: 11/18/2022]  Open
36
Lim HC, Surovtsev IV, Beltran BG, Huang F, Bewersdorf J, Jacobs-Wagner C. Evidence for a DNA-relay mechanism in ParABS-mediated chromosome segregation. eLife 2014;3:e02758. [PMID: 24859756 PMCID: PMC4067530 DOI: 10.7554/elife.02758] [Citation(s) in RCA: 158] [Impact Index Per Article: 14.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2014] [Accepted: 05/16/2014] [Indexed: 12/12/2022]  Open
37
A propagating ATPase gradient drives transport of surface-confined cellular cargo. Proc Natl Acad Sci U S A 2014;111:4880-5. [PMID: 24567408 DOI: 10.1073/pnas.1401025111] [Citation(s) in RCA: 129] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
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