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Garcia--Van Smévoorde M, Piorkowski G, Emboulé L, Dos Santos G, Loraux C, Guyomard-Rabenirina S, Joannes MO, Fagour L, Najioullah F, Cabié A, de Lamballerie X, Vega-Rúa A, Césaire R, Calvez E. Phylogenetic Investigations of Dengue 2019-2021 Outbreak in Guadeloupe and Martinique Caribbean Islands. Pathogens 2023; 12:1182. [PMID: 37764990 PMCID: PMC10534936 DOI: 10.3390/pathogens12091182] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Revised: 09/14/2023] [Accepted: 09/15/2023] [Indexed: 09/29/2023] Open
Abstract
Dengue fever has been a public health problem in the Caribbean region since 1981, when it first reappeared in Cuba. In 1989, it was reported in Martinique and Guadeloupe (two French islands 200 km apart); since then, DENV has caused several epidemics locally. In 2019-2021, DENV-1, DENV-2, and DENV-3 were detected. Serotype distribution was differentiated, with DENV-2 and DENV-3 predominating in Guadeloupe and Martinique, respectively. Complete genome sequencing was carried out on 32 specimens, and phylogenic analysis identified the circulation of genotype V for DENV-1, cosmopolitan genotype for DENV-2, and genotype III for DENV-3. However, two distinct circulating groups were identified for DENV-1 and DENV-3, suggesting independent introductions. Overall, despite the context of the COVID-19 pandemic and the associated travel restrictions, these results confirm the active circulation of DENV and specific epidemiological features on each of the two islands. Such differences may be linked to the founder effect of the various introduction events, and to local factors such as the population immunity and the transmission capacity of the vectors. Further genomic and epidemiological characterization of DENV strains remains essential to understand how dengue spreads in each specific geographical context and to prevent future epidemics.
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Affiliation(s)
- Margot Garcia--Van Smévoorde
- Vector Control Research Laboratory, Transmission Reservoir and Pathogens Diversity Unit, Institut Pasteur de la Guadeloupe, Les Abymes 97139, Guadeloupe;
| | - Géraldine Piorkowski
- Unité des Virus Emergents (UVE), Aix-Marseille Univ-IRD 190-Inserm 1207, 13005 Marseille, France; (G.P.); (X.d.L.)
- National Reference Center for Arboviruses, National Institute of Health and Medical Research (Inserm), 13005 Marseille, France
- French Armed Forces Biomedical Research Institute (IRBA), 91220 Brétigny-sur-Orge, France
| | - Loic Emboulé
- Molecular Genetics and Inherited Red Blood Cell Diseases Laboratory, University Hospitals of Guadeloupe, Pointe-à-Pitre 97159, Guadeloupe;
| | - Georges Dos Santos
- Department of Virology, University Hospitals of Martinique, Fort-de-France, 97200 Martinique, France; (G.D.S.); (L.F.)
- Pathogenesis and Controle of Chronic and Emerging Infections, French National Blood Service (EFS), National Institute of Health and Medical Research (Inserm), University of Montpellier, 34000 Montpellier, France; (A.C.); (R.C.)
- University of Antilles, Pointe-à-Pitre 97110, Guadeloupe
| | - Cécile Loraux
- Department of Virology, University Hospitals of Guadeloupe, Pointe-à-Pitre 97159, Guadeloupe;
| | - Stéphanie Guyomard-Rabenirina
- Microbial Ecosystems Interaction Laboratory, Transmission Reservoir and Pathogens Diversity Unit, Institut Pasteur de la Guadeloupe, Les Abymes 97139, Guadeloupe;
| | - Marie-Odile Joannes
- Department of Hematology Immunology Histocompatibility, University Hospitals of Guadeloupe, Pointe-à-Pitre 97159, Guadeloupe;
| | - Laurence Fagour
- Department of Virology, University Hospitals of Martinique, Fort-de-France, 97200 Martinique, France; (G.D.S.); (L.F.)
| | - Fatiha Najioullah
- Department of Clinical Research and Innovation, University Hospitals of Martinique, Fort-de-France, 97200 Martinique, France;
| | - André Cabié
- Pathogenesis and Controle of Chronic and Emerging Infections, French National Blood Service (EFS), National Institute of Health and Medical Research (Inserm), University of Montpellier, 34000 Montpellier, France; (A.C.); (R.C.)
- University of Antilles, Pointe-à-Pitre 97110, Guadeloupe
- Department of Infectious and Tropical Diseases, University Hospitals of Martinique, Fort-de-France, 97200 Martinique, France
| | - Xavier de Lamballerie
- Unité des Virus Emergents (UVE), Aix-Marseille Univ-IRD 190-Inserm 1207, 13005 Marseille, France; (G.P.); (X.d.L.)
- National Reference Center for Arboviruses, National Institute of Health and Medical Research (Inserm), 13005 Marseille, France
| | - Anubis Vega-Rúa
- Vector Control Research Laboratory, Transmission Reservoir and Pathogens Diversity Unit, Institut Pasteur de la Guadeloupe, Les Abymes 97139, Guadeloupe;
| | - Raymond Césaire
- Pathogenesis and Controle of Chronic and Emerging Infections, French National Blood Service (EFS), National Institute of Health and Medical Research (Inserm), University of Montpellier, 34000 Montpellier, France; (A.C.); (R.C.)
- University of Antilles, Pointe-à-Pitre 97110, Guadeloupe
- Department of Virology, University Hospitals of Guadeloupe, Pointe-à-Pitre 97159, Guadeloupe;
| | - Elodie Calvez
- Vector Control Research Laboratory, Transmission Reservoir and Pathogens Diversity Unit, Institut Pasteur de la Guadeloupe, Les Abymes 97139, Guadeloupe;
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Silva ETCD, Olinda RA, Pachá AS, Costa AO, Brito AL, Pedraza DF. Análise espacial da distribuição dos casos de dengue e sua relação com fatores socioambientais no estado da Paraíba, Brasil, 2007-2016. SAÚDE EM DEBATE 2020. [DOI: 10.1590/0103-1104202012514] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
RESUMO A dengue é um grave problema de saúde pública, principalmente em países que apresentam condições socioambientais propícias para o desenvolvimento e proliferação do seu agente transmissor. Este estudo teve como objetivo analisar a distribuição espacial da incidência da dengue no estado da Paraíba entre 2007 e 2016, avaliando a existência de dependência geográfica e sua relação com fatores socioeconômicos e ambientais. Estudo ecológico, tendo com unidade de análise os 223 municípios do estado. Utilizaram-se o Índice de Moran global e local e a estatística c de Geary para avaliar a autocorrelação espacial da dengue e a associação com variáveis socioambientais. As análises foram realizadas por meio do software estatístico R Core Team versão 3.3.2. Ao analisar a distribuição de casos de dengue nos municípios da Paraíba, pode-se identificar que a doença vem avançando e acometendo maior número de cidades a cada ano. A doença esteve presente em todos as cidades analisadas, o que demonstrou a necessidade de implementar ações de prevenção da doença em todo o estado. Mediante esta pesquisa, ficou claro que a dengue, no estado da Paraíba, não é determinada por fator único e isolado, mas sim, pela combinação de vários fatores do contexto socioeconômico e ambiental.
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Ramos-Castañeda J, Barreto dos Santos F, Martínez-Vega R, Galvão de Araujo JM, Joint G, Sarti E. Dengue in Latin America: Systematic Review of Molecular Epidemiological Trends. PLoS Negl Trop Dis 2017; 11:e0005224. [PMID: 28068335 PMCID: PMC5221820 DOI: 10.1371/journal.pntd.0005224] [Citation(s) in RCA: 61] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2016] [Accepted: 12/01/2016] [Indexed: 01/02/2023] Open
Abstract
Dengue, the predominant arthropod-borne viral disease affecting humans, is caused by one of four distinct serotypes (DENV-1, -2, -3 or -4). A literature analysis and review was undertaken to describe the molecular epidemiological trends in dengue disease and the knowledge generated in specific molecular topics in Latin America, including the Caribbean islands, from 2000 to 2013 in the context of regional trends in order to identify gaps in molecular epidemiological knowledge and future research needs. Searches of literature published between 1 January 2000 and 30 November 2013 were conducted using specific search strategies for each electronic database that was reviewed. A total of 396 relevant citations were identified, 57 of which fulfilled the inclusion criteria. All four dengue virus serotypes were present and co-circulated in many countries over the review period (with the predominance of individual serotypes varying by country and year). The number of countries in which more than one serotype circulated steadily increased during the period under review. Molecular epidemiology data were found for Argentina, Bolivia, Brazil, the Caribbean region, Colombia, Ecuador, Mexico and Central America, Paraguay, Peru and Venezuela. Distinct lineages with different dynamics were found in each country, with co-existence, extinction and replacement of lineages occurring over the review period. Despite some gaps in the literature limiting the possibility for comparison, our review has described the molecular epidemiological trends of dengue infection. However, several gaps in molecular epidemiological information across Latin America and the Caribbean were identified that provide avenues for future research; in particular, sequence determination of the dengue virus genome is important for more precise phylogenetic classification and correlation with clinical outcome and disease severity. The wide distribution of the mosquito vector and the co-circulation of multiple dengue virus serotypes has led to increases in the incidence of dengue in the Americas, where it is a major public health concern. Identifying molecular epidemiological trends may help to identify the reasons for the re-emergence of dengue across Latin America and the Caribbean, and, in turn, enable disease control and management. We conducted this review using well defined methods to search for and identify relevant research according to predetermined inclusion criteria. The objective was to obtain a clearer understanding of changes occurring within dengue serotypes that have resulted in substantial genetic diversity and the emergence of endemic and epidemic strains in different parts of the region. There remain fundamental gaps in our understanding of the epidemiological and evolutionary dynamics of dengue and its relation with disease, and it is not possible to correlate accurately spatial or temporal trends in disease epidemiology, disease severity, or the genetic diversity of DENV. It is important to maintain comprehensive epidemiological surveillance throughout the region (including sequencing of viral strains) to detect new DENV lineages and to understand the regional patterns of DENV dissemination.
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Affiliation(s)
- José Ramos-Castañeda
- Instituto Nacional de Salud Publica, Centro de Investigaciones sobre Enfermedades Infecciosas, Morelos, Mexico
| | - Flavia Barreto dos Santos
- Laboratório de Imunologia Viral, Instituto Oswaldo Cruz/ Fundação Oswaldo Cruz, Rio de Janeiro, Brazil
| | | | - Josélio Maria Galvão de Araujo
- Laboratório de Biologia Molecular de Doenças Infecciosas e do Câncer, Departamento de Microbiologia e Parasitologia; Instituto de Medicina Tropical do Rio Grande do Norte; Universidade Federal do Rio Grande do Norte, Natal, Brazil
| | - Graham Joint
- Synercom Ltd, Macclesfield, Cheshire, United Kingdom
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Vazeille M, Gaborit P, Mousson L, Girod R, Failloux AB. Competitive advantage of a dengue 4 virus when co-infecting the mosquito Aedes aegypti with a dengue 1 virus. BMC Infect Dis 2016; 16:318. [PMID: 27390932 PMCID: PMC4939008 DOI: 10.1186/s12879-016-1666-0] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2015] [Accepted: 06/14/2016] [Indexed: 01/30/2023] Open
Abstract
Background Dengue viruses (DENV) are comprised in four related serotypes (DENV-1 to 4) and are critically important arboviral pathogens affecting human populations in the tropics. South American countries have seen the reemergence of DENV since the 1970’s associated with the progressive re-infestation by the mosquito vector, Aedes aegypti. In French Guiana, DENV is now endemic with the co-circulation of different serotypes resulting in viral epidemics. Between 2009 and 2010, a predominant serotype change occurred from DENV-1 to DENV-4 suggesting a competitive displacement. The aim of the present study was to evaluate the potential role of the mosquito in the selection of the new epidemic serotype. Methods To test this hypothesis of competitive displacement of one serotype by another in the mosquito vector, we performed mono- and co-infections of local Ae. aegypti collected during the inter-epidemic period with both viral autochthonous epidemic serotypes and compared infection, dissemination and transmission rates. We performed oral artificial infections of F1 populations in BSL-3 conditions and analyzed infection, dissemination and transmission rates. Results When two populations of Ae. aegypti from French Guiana were infected with either serotype, no significant differences in dissemination and transmission were observed between DENV-1 and DENV-4. However, in co-infection experiments, a strong competitive advantage for DENV-4 was seen at the midgut level leading to a much higher dissemination of this serotype. Furthermore only DENV-4 was present in Ae. aegypti saliva and therefore able to be transmitted. Conclusions In an endemic context, mosquito vectors may be infected by several DENV serotypes. Our results suggest a possible competition between serotypes at the midgut level in co-infected mosquitoes leading to a drastically different transmission potential and, in this case, favoring the competitive displacement of DENV-1 by DENV-4. This phenomenon was observed despite a similar replicative fitness in mono-infections conditions.
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Affiliation(s)
- Marie Vazeille
- Institut Pasteur, Department of Virology, Arboviruses and Insect Vectors, 25 rue du Dr Roux, 75724, Paris Cedex 15, France
| | - Pascal Gaborit
- Medical Entomology Unit, Institut Pasteur of French Guiana, Cayenne, French Guiana
| | - Laurence Mousson
- Institut Pasteur, Department of Virology, Arboviruses and Insect Vectors, 25 rue du Dr Roux, 75724, Paris Cedex 15, France
| | - Romain Girod
- Medical Entomology Unit, Institut Pasteur of French Guiana, Cayenne, French Guiana
| | - Anna-Bella Failloux
- Institut Pasteur, Department of Virology, Arboviruses and Insect Vectors, 25 rue du Dr Roux, 75724, Paris Cedex 15, France.
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L'Azou M, Taurel AF, Flamand C, Quénel P. Recent epidemiological trends of dengue in the French territories of the Americas (2000-2012): a systematic literature review. PLoS Negl Trop Dis 2014; 8:e3235. [PMID: 25375627 PMCID: PMC4222734 DOI: 10.1371/journal.pntd.0003235] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2014] [Accepted: 09/03/2014] [Indexed: 12/11/2022] Open
Abstract
UNLABELLED Dengue is a public health concern across the globe, and an escalating problem in the Americas. As part of a wider programme (covering Latin America and South East Asia) to characterize the epidemiology of dengue in dengue endemic areas, we undertook a systematic literature review to assess epidemiological trends (incidence, timing and duration of outbreaks/epidemics, age and sex distribution, serotype distribution, seroprevalence and disease severity) for dengue across the French Territories of the Americas (FTA), in French Guiana, Guadeloupe, Martinique, Saint Martin and Saint Barthélemy between 2000 and 2012 (CRD42012002341: http://www.crd.york.ac.uk/prospero/display_record.asp?ID=CRD42012002341). Of 413 relevant data sources identified, 45 were eligible for inclusion. A large proportion of the available data were from national surveillance reports, and 12 publications were from peer-reviewed journals. During the review period, 3-5 epidemics were identified in each of the island territories and French Guiana, and epidemics were often associated with a shift in the predominant circulating dengue virus serotype. Substantial gaps in epidemiological knowledge were identified. In particular, information regarding dengue virus genotype distribution, seroprevalence and age distribution of dengue were lacking. Additionally, much of the available data were from epidemic years; data from inter-epidemic periods were sparse. Nevertheless, the available epidemiological data showed that dengue is endemic across the FTA and suggest an evolution towards hyperendemicity, highlighting the need to continue the efforts with the existing surveillance programmes to assist in planning an effective vaccination programme once a dengue vaccine is deployed. PROTOCOL REGISTRATION PROSPERO CRD42012002341.
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Affiliation(s)
- Maïna L'Azou
- Global Epidemiology Department, Sanofi Pasteur, Lyon, France
| | | | - Claude Flamand
- Institut Pasteur in French Guiana, Cayenne, French Guiana
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Lima MDRQ, Nogueira RMR, Filippis AMBD, Nunes PCG, Sousa CSD, Silva MHD, Santos FBD. A simple heat dissociation method increases significantly the ELISA detection sensitivity of the nonstructural-1 glycoprotein in patients infected with DENV type-4. J Virol Methods 2014; 204:105-8. [DOI: 10.1016/j.jviromet.2014.02.031] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2013] [Revised: 02/18/2014] [Accepted: 02/21/2014] [Indexed: 12/14/2022]
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Thomas L, Najioullah F, Besnier F, Valentino R, Césaire R, Rosine J, Césaire JRR, Cabié A. Clinical presentation of dengue by serotype and year of epidemic in Martinique. Am J Trop Med Hyg 2014; 91:138-45. [PMID: 24865681 DOI: 10.4269/ajtmh.13-0595] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
During the last decade Martinique experienced four dengue epidemics, each characterized by the predominance of 1 or 2 serotypes. In this retrospective database analysis, we investigated the relationship between dengue serotype and disease severity. Data on dengue were collected from 715 patients (male/female ratio 0.87), 14 to 91 years of age (median 35 years) examined in the adult emergency department between 2005 and 2010. In this series, DENV-4 infections more frequently had a milder clinical presentation. The DENV-2 infections were most often secondary infections admitted at the critical phase of dengue illness with signs of plasma leakage. The DENV-1 infections were disabling, particularly in females, and most often led to disease of intermediate severity, without overt plasma leakage. These data were consistent with there being differences in virulence between serotypes, regardless of the host's immune status. However, secondary DENV-2 infections showed an increased risk of plasma leakage.
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Affiliation(s)
- Laurent Thomas
- Emergency and Intensive Care Department, University Hospital, Fort-de-France, Martinique; Laboratory of Virology and Immunology, University Hospital, Fort-de-France, Martinique; Regional office (Cire) of the French Institute for Public Health Surveillance, Fort-de-France, Martinique; Department of Infectious and Tropical Diseases and CIC-EC (Inserm CIE 802), University Hospital, Fort-de-France, Martinique
| | - Fatiha Najioullah
- Emergency and Intensive Care Department, University Hospital, Fort-de-France, Martinique; Laboratory of Virology and Immunology, University Hospital, Fort-de-France, Martinique; Regional office (Cire) of the French Institute for Public Health Surveillance, Fort-de-France, Martinique; Department of Infectious and Tropical Diseases and CIC-EC (Inserm CIE 802), University Hospital, Fort-de-France, Martinique
| | - François Besnier
- Emergency and Intensive Care Department, University Hospital, Fort-de-France, Martinique; Laboratory of Virology and Immunology, University Hospital, Fort-de-France, Martinique; Regional office (Cire) of the French Institute for Public Health Surveillance, Fort-de-France, Martinique; Department of Infectious and Tropical Diseases and CIC-EC (Inserm CIE 802), University Hospital, Fort-de-France, Martinique
| | - Ruddy Valentino
- Emergency and Intensive Care Department, University Hospital, Fort-de-France, Martinique; Laboratory of Virology and Immunology, University Hospital, Fort-de-France, Martinique; Regional office (Cire) of the French Institute for Public Health Surveillance, Fort-de-France, Martinique; Department of Infectious and Tropical Diseases and CIC-EC (Inserm CIE 802), University Hospital, Fort-de-France, Martinique
| | | | | | - Jacques Rosine Raymond Césaire
- Emergency and Intensive Care Department, University Hospital, Fort-de-France, Martinique; Laboratory of Virology and Immunology, University Hospital, Fort-de-France, Martinique; Regional office (Cire) of the French Institute for Public Health Surveillance, Fort-de-France, Martinique; Department of Infectious and Tropical Diseases and CIC-EC (Inserm CIE 802), University Hospital, Fort-de-France, Martinique
| | - André Cabié
- Emergency and Intensive Care Department, University Hospital, Fort-de-France, Martinique; Laboratory of Virology and Immunology, University Hospital, Fort-de-France, Martinique; Regional office (Cire) of the French Institute for Public Health Surveillance, Fort-de-France, Martinique; Department of Infectious and Tropical Diseases and CIC-EC (Inserm CIE 802), University Hospital, Fort-de-France, Martinique
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Yamashita A, Sasaki T, Kurosu T, Yasunaga T, Ikuta K. Origin and distribution of divergent dengue virus: novel database construction and phylogenetic analyses. Future Virol 2013. [DOI: 10.2217/fvl.13.99] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Dengue virus (DENV), a mosquito-borne agent that exists as four serotypes (DENV-1–4), induces dengue illness. DENV has a positive-sense, ssRNA genome of approximately 11 kb that encodes a capsid protein, a premembrane protein and an envelope glycoprotein, in addition to seven nonstructural proteins. These individual genes show sequence variations that can be analyzed phylogenetically to yield several genotypes within each serotype. Here, the sequences of individual DENV genes were collected and used to construct a novel DENV database. This database was then used to characterize the evolution of individual genotypes in several countries. Interestingly, the database provided evidence for recombination between two or three different genotypes to yield new genotypes. This novel database will be available on the internet and is expected to be highly useful for dengue genetic studies, including phylogenetic analyses.
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Affiliation(s)
- Akifumi Yamashita
- Research Institute for Microbial Diseases, Osaka University, Suita, Osaka 565-0871, Japan
- National Institute of Infectious Diseases, Tokyo 162-8640, Japan
| | - Tadahiro Sasaki
- Research Institute for Microbial Diseases, Osaka University, Suita, Osaka 565-0871, Japan
| | - Takeshi Kurosu
- Research Institute for Microbial Diseases, Osaka University, Suita, Osaka 565-0871, Japan
| | - Teruo Yasunaga
- Research Institute for Microbial Diseases, Osaka University, Suita, Osaka 565-0871, Japan
| | - Kazuyoshi Ikuta
- Research Institute for Microbial Diseases, Osaka University, Suita, Osaka 565-0871, Japan
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Nunes MRT, Faria NR, Vasconcelos HB, Medeiros DBDA, Silva de Lima CP, Carvalho VL, Pinto da Silva EV, Cardoso JF, Sousa EC, Nunes KNB, Rodrigues SG, Abecasis AB, Suchard MA, Lemey P, Vasconcelos PFDC. Phylogeography of dengue virus serotype 4, Brazil, 2010-2011. Emerg Infect Dis 2013; 18:1858-64. [PMID: 23092706 PMCID: PMC3559147 DOI: 10.3201/eid1811.120217] [Citation(s) in RCA: 66] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Abstract
Multiple origins indicate this serotype was introduced in several episodes. Dengue virus serotype 4 (DENV-4) reemerged in Roraima State, Brazil, 28 years after it was last detected in the country in 1982. To study the origin and evolution of this reemergence, full-length sequences were obtained for 16 DENV-4 isolates from northern (Roraima, Amazonas, Pará States) and northeastern (Bahia State) Brazil during the 2010 and 2011 dengue virus seasons and for an isolate from the 1982 epidemic in Roraima. Spatiotemporal dynamics of DENV-4 introductions in Brazil were applied to envelope genes and full genomes by using Bayesian phylogeographic analyses. An introduction of genotype I into Brazil from Southeast Asia was confirmed, and full genome phylogeographic analyses revealed multiple introductions of DENV-4 genotype II in Brazil, providing evidence for >3 introductions of this genotype within the last decade: 2 from Venezuela to Roraima and 1 from Colombia to Amazonas. The phylogeographic analysis of full genome data has demonstrated the origins of DENV-4 throughout Brazil.
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Temporao JG, Penna GO, Carmo EH, Coelho GE, do Socorro Silva Azevedo R, Teixeira Nunes MR, da Costa Vasconcelos PF. Dengue virus serotype 4, Roraima State, Brazil. Emerg Infect Dis 2011; 17:938-40. [PMID: 21529421 PMCID: PMC3321786 DOI: 10.3201/eid1705.101681] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
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Chen R, Vasilakis N. Dengue--quo tu et quo vadis? Viruses 2011; 3:1562-608. [PMID: 21994796 PMCID: PMC3187692 DOI: 10.3390/v3091562] [Citation(s) in RCA: 176] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2011] [Revised: 08/12/2011] [Accepted: 08/12/2011] [Indexed: 02/08/2023] Open
Abstract
Dengue viruses (DENV) are by far the most important arboviral pathogens in the tropics around the world, putting at risk of infection nearly a third of the global human population. DENV are members of the genus Flavivirus in the Family Flaviviridae and comprise four antigenically distinct serotypes (DENV-1-4). Although they share almost identical epidemiological features, they are genetically distinct. Phylogenetic analyses have revealed valuable insights into the origins, epidemiology and the forces that shape DENV evolution in nature. In this review, we examine the current status of DENV evolution, including but not limited to rates of evolution, selection pressures, population sizes and evolutionary constraints, and we discuss how these factors influence transmission, pathogenesis and emergence.
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Affiliation(s)
- Rubing Chen
- Department of Pathology, University of Texas Medical Branch, 301 University Blvd, Galveston, TX 77555, USA; E-Mail:
| | - Nikos Vasilakis
- Department of Pathology, University of Texas Medical Branch, 301 University Blvd, Galveston, TX 77555, USA; E-Mail:
- Center for Biodefense and Emerging Infectious Diseases, University of Texas Medical Branch, 301 University Blvd, Galveston, TX 77555, USA
- Institute for Human Infection and Immunity, University of Texas Medical Branch, 301 University Blvd, Galveston, TX 77555, USA
- Center for Tropical Diseases, University of Texas Medical Branch, 301 University Blvd, Galveston, TX 77555, USA
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Forshey BM, Morrison AC, Cruz C, Rocha C, Vilcarromero S, Guevara C, Camacho DE, Alava A, Madrid C, Beingolea L, Suarez V, Comach G, Kochel TJ. Dengue virus serotype 4, northeastern Peru, 2008. Emerg Infect Dis 2010; 15:1815-8. [PMID: 19891873 PMCID: PMC2857240 DOI: 10.3201/eid1511.090663] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
In 2008, dengue virus serotype 4 (DENV-4) emerged in northeastern Peru, causing a large outbreak and displacing DENV-3, which had predominated for the previous 6 years. Phylogenetic analysis of 2008 and 2009 isolates support their inclusion into DENV-4 genotype II, forming a lineage distinct from strains that had previously circulated in the region.
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Affiliation(s)
- Brett M Forshey
- US Naval Medical Research Center Detachment, Lima and Iquitos, Peru
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de Thoisy B, Lacoste V, Germain A, Muñoz-Jordán J, Colón C, Mauffrey JF, Delaval M, Catzeflis F, Kazanji M, Matheus S, Dussart P, Morvan J, Setién AA, Deparis X, Lavergne A. Dengue infection in neotropical forest mammals. Vector Borne Zoonotic Dis 2009; 9:157-70. [PMID: 18945183 DOI: 10.1089/vbz.2007.0280] [Citation(s) in RCA: 68] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
In South America, dengue is the arbovirus-transmitted disease with the highest incidence. Unlike other arboviruses, wild mammals have no confirmed role in the cycle of dengue in the neotropics, although serological studies have suggested a possible secondary amplification cycle involving mammals other than nonhuman primates. In French Guiana, where all four serotypes (DENV-1, DENV-2, DENV-3, DENV-4) are present, the disease is endemic with outbreak events. To determine whether wild mammals can be infected by DENV, rodents, marsupials, and bats were captured over several periods, from 2001 to 2007, at two sites. The first location is a secondary forest surrounded by an urban area where dengue is endemic. The second location is a forest edge site where the disease has not yet emerged. A total of 10,000 trap-nights were performed and 616 mammals were captured. RNAs representing the four DENV serotypes were detected at both sites by reverse-transcriptase polymerase chain reaction in the livers and/or sera of 92 mammals belonging to 14 out of 32 species distributed among all the orders investigated: Rodentia (33 positive/146 tested), Marsupialia (40/318), and Chiroptera (19/152). Sequence analyses of a portion of the capsid and premembrane junction revealed that mammal strains of DENV-1, DENV-2, DENV-3, and DENV-4 had only 92.6%, 89%, 95%, and 95.8% identity, respectively, with strains circulating in the human population during the same periods. Regarding DENV-2, strains related (99% identity) to those responsible for an epidemic event in humans in French Guiana concurrent to the capture sessions were also evidenced, suggesting that wild mammals in edge habitats can be infected by circulating human strains. Our results demonstrate, for the first time, that neotropical wild mammals can be infected with dengue virus. The question of whether mammals maintain DENV in enzootic cycles and can play a role in its reemergence in human populations remains to be answered.
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Affiliation(s)
- Benoît de Thoisy
- Laboratoire des Interactions Virus-Hôtes, Institut Pasteur de la Guyane, Cayenne, French Guiana
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de Melo FL, Romano CM, Zanotto PMDA. Introduction of dengue virus 4 (DENV-4) genotype I into Brazil from Asia? PLoS Negl Trop Dis 2009; 3:e390. [PMID: 19399169 PMCID: PMC2669502 DOI: 10.1371/journal.pntd.0000390] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Affiliation(s)
- Fernando Lucas de Melo
- LEMB, Department of Microbiology, Institute of Biomedical Science, University of São Paulo, São Paulo, São Paulo, Brazil
| | - Camila Malta Romano
- LEMB, Department of Microbiology, Institute of Biomedical Science, University of São Paulo, São Paulo, São Paulo, Brazil
| | - Paolo Marinho de Andrade Zanotto
- LEMB, Department of Microbiology, Institute of Biomedical Science, University of São Paulo, São Paulo, São Paulo, Brazil
- * E-mail:
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Meynard JB, Ardillon V, Venturin C, Ravachol F, Basurko C, Matheus S, Gaborit P, Grenier C, Dussart P, Quénel P. First description of a dengue fever outbreak in the interior of French Guiana, February 2006. Eur J Public Health 2009; 19:183-8. [PMID: 19221023 DOI: 10.1093/eurpub/ckn137] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
BACKGROUND A dengue fever outbreak occurred in the interior of French Guiana from November 2005 onwards. An investigation, with epidemiological, entomological and public health inputs, was initiated. Its objectives were to confirm the outbreak, to describe the emergence of dengue fever in the High Maroni area and to initiate a specific public health response. METHODS The investigation was conducted in Maripasoula in February 2006, the biggest community in that part of the country. Definition criteria were used for suspected, probable and confirmed cases of dengue fever. An entomological evaluation for larvae and adult mosquitoes was carried out. Some personal and collective vector control measures were set up by the vector control team. RESULTS This survey identified 127 suspected dengue fever cases, whereas the epidemiological surveillance system detected only six probable and confirmed cases from the same place and for the same period. The proportion of dengue fever was higher in those people who had not travelled (23.5%) than within the population that had travelled (15.3%) in the three previous months (P = 0.01). Larvae of Stegomyia aegypti were found throughout the town, and adults were captured in 90.9% of the houses. CONCLUSION This is the first time that a dengue fever outbreak has been described beyond the coastal region of this French overseas Department.
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de Lavaissiere M, D’Ortenzio E, Dussart P, Fontanella JM, Djossou F, Carme B, Marchou B. Febrile illness at the emergency department of Cayenne Hospital, French Guiana. Trans R Soc Trop Med Hyg 2008; 102:1055-7. [DOI: 10.1016/j.trstmh.2008.06.011] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2008] [Revised: 06/09/2008] [Accepted: 06/13/2008] [Indexed: 11/29/2022] Open
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Meynard JB, Chaudet H, Texier G, Ardillon V, Ravachol F, Deparis X, Jefferson H, Dussart P, Morvan J, Boutin JP. Value of syndromic surveillance within the Armed Forces for early warning during a dengue fever outbreak in French Guiana in 2006. BMC Med Inform Decis Mak 2008; 8:29. [PMID: 18597694 PMCID: PMC2459153 DOI: 10.1186/1472-6947-8-29] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2007] [Accepted: 07/02/2008] [Indexed: 12/04/2022] Open
Abstract
Background A dengue fever outbreak occured in French Guiana in 2006. The objectives were to study the value of a syndromic surveillance system set up within the armed forces, compared to the traditional clinical surveillance system during this outbreak, to highlight issues involved in comparing military and civilian surveillance systems and to discuss the interest of syndromic surveillance for public health response. Methods Military syndromic surveillance allows the surveillance of suspected dengue fever cases among the 3,000 armed forces personnel. Within the same population, clinical surveillance uses several definition criteria for dengue fever cases, depending on the epidemiological situation. Civilian laboratory surveillance allows the surveillance of biologically confirmed cases, within the 200,000 inhabitants. Results It was shown that syndromic surveillance detected the dengue fever outbreak several weeks before clinical surveillance, allowing quick and effective enhancement of vector control within the armed forces. Syndromic surveillance was also found to have detected the outbreak before civilian laboratory surveillance. Conclusion Military syndromic surveillance allowed an early warning for this outbreak to be issued, enabling a quicker public health response by the armed forces. Civilian surveillance system has since introduced syndromic surveillance as part of its surveillance strategy. This should enable quicker public health responses in the future.
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Regato M, Recarey R, Moratorio G, de Mora D, Garcia-Aguirre L, Gónzalez M, Mosquera C, Alava A, Fajardo A, Alvarez M, D' Andrea L, Dubra A, Martínez M, Khan B, Cristina J. Phylogenetic analysis of the NS5 gene of dengue viruses isolated in Ecuador. Virus Res 2007; 132:197-200. [PMID: 18063164 DOI: 10.1016/j.virusres.2007.10.012] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2007] [Revised: 10/10/2007] [Accepted: 10/17/2007] [Indexed: 11/18/2022]
Abstract
Dengue virus (DENV) is a member of the genus Flavivirus of the family Flaviviridae. DENV causes a wide range of diseases in humans, from the acute febrile illness dengue fever (DF) to life-threatening dengue hemorrhagic fever/dengue shock syndrome (DHF/DSS). There is not knowledge of the genetic relations among DENV circulating in Ecuador. Given the emerging behaviour of DENV, a single tube RT-PCR assay using a pair of consensus primers to target the NS5 coding region has been recently validated for rapid detection of flaviviruses. In order to gain insight into the degree of genetic variation of DENV strains isolated in Ecuador, DENV NS5 sequences from 23 patients were obtained by direct sequencing of PCR fragments using the mentioned one step RT-PCR assay. Phylogenetic analysis carried out using the 23 Ecuadorian DENV NS5 sequences, as well as 56 comparable sequences from DENV strains isolated elsewhere, revealed a close genetic relation among Ecuadorian strains and DENV isolates of Caribbean origin. The use of partial NS5 gene sequences may represent a useful alternative for a rapid phylogenetic analysis of DENV outbreaks.
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Affiliation(s)
- Mary Regato
- Instituto Nacional de Higiene y Medicina Tropical Leopoldo Inquieta Perez, Julian Coronel 905 y Esmeraldas, Guayaquil, Ecuador
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