Expression of deep brain photoreceptors in the Pekin drake: a possible role in the maintenance of testicular function

Role of deep brain photoreceptors in regulation of daily and seasonal responses in birds

Birds exhibit an extraordinary morphological, physiological, and behavioral diversity that allows them to adapt to the diverse environments of our planet. To achieve this, they utilize different sensory structures. One of these structures is located in the deep brain and contains neurons with photopigments (Deep Brain Photoreceptors, DBP) that detect daily and seasonal changes in ambient light (photoperiod), allowing the individual to adjust and synchronize physiological processes with the environment. This DBPs detects and transmits light information to the hypothalamic-pituitary-gonadal axis, regulating the gonadal recrudescence/regression cycle and possibly daily responses in birds. This work reviews and discusses the state of the art about the presence and functionality of DBPs in a phylogenetic context, with a particular focus on annual reproductive responses and their little-known relationship with daily responses. Exceptions to the seasonal reproductive regulation mechanism, as observed in opportunistic bird species such as the eared dove, where food availability appears to drive the activity of the gonadal oscillator are also discussed. Finally, the possible neural pathways through which DBPs transmit photoperiodic information to the circadian system in birds are proposed.

The ventral premammillary nucleus at the interface of environmental cues and social behaviors

The survival of species heavily depends on social behaviors, which in turn rely on the ability to recognize conspecifics within an appropriate environmental context. These behaviors are regulated by the hypothalamus, which processes signals from both the external environment (such as food availability, photoperiod, and chemical cues from other animals) and the internal state (including sex, estrous cycle stage, nutritional status, and levels of stress). Understanding the brain circuits responsible for specific behaviors in experimental animals is a complex task given the intricate interactions between these factors and the diverse behavioral strategies employed by different species. In this review, we will critically evaluate recent studies focused on the ventral premammillary nucleus (PMv) and discuss findings that reveal the PMv as a key, yet sometimes overlooked, node in integrating external and internal environmental cues. We will examine its structural components, internal connectivity, humoral influences, and associated functions, demonstrating the PMv role in the neural regulation of neuroendocrine responses and social behaviors. While much of the existing research centers on rats and mice as model organisms, we will highlight relevant species differences and include a dedicated section for findings in other species.

Pulsed alternating wavelength system lighting does not negatively impact production or welfare but reduces dopamine activity and may improve bone growth in grow-out Pekin ducks: Effects of PAWS lighting on meat ducks

The production and welfare of Pekin ducks can be affected by the lighting type they are housed under. There is no standard lighting system in industry and little data evaluating effects of different light systems on duck production and welfare. Pulsed Alternating Wavelength System (PAWS) is a novel LED technology that delivers multiple wavelengths of light in pulsating patterns. This study aimed to determine the effects of PAWS on brain serotonin turnover and skeletal quality in ducks. Ducks housed under PAWS were hypothesized to have lower brain serotonin turnover and equal bone quality compared to those housed under control lights (fluorescent with digital ballasts, 4500K, ∼40 lux). Ducks were placed in floor pens under PAWS or control lighting (1200 ducks/pen, n = 4 pens/treatment) at day of hatch until processing at 30 days of age (DOA). Body weights and feed intake were monitored weekly. Brains, femurs, tibiae, and humeri were collected on days 7, 14, 21 and 29 (n = 6 ducks/age/lighting type). Brain serotonin and metabolites were measured. Bone length, width, breaking strength, and ash were determined. Serotonin data were analyzed using 2-way ANOVA for age and lighting treatment with a post-hoc Fisher's LSD test. Bone data were analyzed with independent t-tests between treatments within each age. Ducks housed under PAWS were heavier by 29 DOA than controls (P < 0.001) with no differences in feed conversion. Brain analyses revealed no differences in serotonin turnover between lighting types. Early interstitial growth of PAWS femur and tibia was increased (P < 0.05), and PAWS femurs had increased bone mineral content at 29 DOA (P = 0.001). At 29 DOA, the PAWS humeri were wider than controls (P = 0.025) and had increased geometrical bone mechanical properties (P < 0.003), but no differences in breaking stress were evident. Results suggest that PAWS may have benefits for production traits and skeletal quality, however, a complete understanding of the welfare effects need further study.

Three different seasonally expressed opsins are present in the brain of the Eared Dove, an opportunist breeder

Birds living at high latitudes perceive the photoperiod through deep-brain photoreceptors (DBP) located in deep-brain neurons. During long photoperiods the information transmitted by these photoreceptors increases the activity of the hypothalamic-pituitary-gonadal (HPG) axis, leading to gonadal development. The presence of photopigments such as VA-Opsin, Opn4, Opn5 and Opn2 in brain areas implicated in reproductive behaviors has been firmly established in several avian species with seasonal breeding, whereas their existence in opportunistic breeding birds remains unconfirmed. The Eared Dove is an urban and peri-urban dove that breeds throughout the year. Males of this species do not exhibit the typical gonadal regression/recrudescence cycle, thus posing the question of what occurs upstream of the HPG axis. We addressed this issue by first studying the presence of diverse opsins located in DBP in the brains of Eared Dove males and whether these photopigments changed their expression throughout the year. We carried out an immunohistochemistry analysis on three different opsins: Opn2 (rhodopsin), Opn3 and Opn5. Our results demonstrate the discrete neuroanatomical distribution of these opsins in the brain of Eared Dove males and strongly indicate different seasonal expressions. In the anterior region of the hypothalamus, Opn2-positive cells were detected throughout the year. By contrast, Opn5 was found to be strongly and seasonally expressed during winter in the anterior and the hypothalamic region. Opn3 was also found to be significantly and seasonally expressed during winter in the hypothalamic region. We thus demonstrate for the first time that males of the Eared Dove, have three different deep-brain opsin-expressing photoreceptors with differential location/distribution in the anterior and hypothalamic region and differential seasonality. The persistence of Opn2 and the strong seasonal expression of nonvisual photopigments Opn3 and Opn5 in two areas of the avian brain, which are associated with reproduction, could be the primary distinction between seasonal and opportunistic breeders.

Photoperiodic physiology of summer breeding birds and a search for the role of eye

Photoperiod regulation of gonadal cycles is well studied and documented in both birds and mammals. Change in photoperiod is considered as the most effective and important cue to time the initiation of the annual physiological cycles in birds. Approaching of long days (as observed in summer months), signal long-day breeding birds to initiation reproduction and other related functions. Birds and other non-mammalian vertebrates use the extraocular photoreceptors which may be present in the mediobasal hypothalamus (MBH) or associated regions to measure the photoperiodic time and so are different from mammals where only the eyes are lone photoreceptive organs. The downstream signaling involves thyroid responsive genes playing a crucial role in mediating photoperiodic signals in both birds and mammals. Role of eyes in the avian seasonal cycle has been a questionable issue with evidences both favoring and negating any role. We propose that morphological as well as physiological data argue that retinal photoreceptors can participate in gonadal cycle, at least in the quail and duck. The present review details the studies of photoneuroendocrine control of gonadal axis in birds and review evidences to decipher the role eyes in photoperiodic mediated physiologies in birds.

Endocrine and molecular regulation mechanisms of follicular development and egg-laying in quails under different photoperiods

Photoperiod is a key environmental factor in regulating bird reproduction and induces neuroendocrine changes through the hypothalamic-pituitary-gonadal (HPG) axis. OPN5, as a deep-brain photoreceptor, transmits light signals to regulate follicular development through TSH-DIO2/DIO3. However, the mechanism among OPN5, TSH-DIO2/DIO3, and VIP/PRL in the HPG axis underlying the photoperiodic regulation of bird reproduction is unclear. In this study, 72 laying quails with 8-week-old were randomly divided into the long-day (LD) group [16 light (L): 8 dark (D)] and the short-day (SD) group (8 L:16 D), and then samples were collected on d 1, d 11, d 22, and d 36 of the experiment. The results showed that compared with the LD group, the SD group significantly inhibited follicular development (P < 0.05), decreased the P4, E2, LH, and PRL in serum (P < 0.05), downregulated the expression of GnRHR, VIP, PRL, OPN5, DIO2, and LHβ (P < 0.05), reduced the expression of GnRH and TSHβ (P > 0.05), and promoted DIO3, GnIH gene expression (P < 0.01). The short photoperiod downregulates OPN5, TSHβ, and DIO2 and upregulates DIO3 expression to regulate the GnRH/GnIH system. The downregulation of GnRHR and upregulation of GnIH resulted in a decrease in LH secretion, which withdrew the gonadotropic effects on ovarian follicles development. Slow down of follicular development and egg laying may also arise from lack of PRL potentiation to small follicle development under short days.

Continuous exposure to red light induces photorefractoriness in broiler breeder pullets

The management of body weight (BW) in broiler breeder pullets is critical to offset the negative correlation between their growth potential and reproductive success. Therefore, a precision feeding system was developed to allocate feed individually based on real-time BW in more frequent, smaller portions. However, this system requires access beyond the 8 h daylength of the rearing period. Since green and red spectra have been shown to stimulate growth and sexual maturation, respectively, this study aimed to evaluate the impact of continuous supplemental illumination of feeders with monochromatic wavelengths on sexual maturation. Furthermore, the best combination of supplemental and daytime lighting for optimizing the pullet-to-hen transition period was investigated. This study contained a 2 × 4 × 2 factorial arrangement, with 2 daytime lights (dtRED and dtGREEN; n = 2 rooms), 4 supplemental lights (sBLUE, sGREEN, sRED, and sCON; n = 12 pens), and 2 supplemental intensities (High and Low). At 3 wk of age (woa), 480 female Ross 708 chicks were randomly distributed across treatments (n = 10/pen). All birds were feed restricted per management guidelines and maintained under 8 h of dtRED or dtGREEN. Birds were photostimulated at 20 woa with 14L:10D. All birds were weighed weekly, with age at first egg (AFE) and production rate calculated weekly per pen. Birds under sRED were heavier than all other treatments from 27 woa to the end of the study (P < 0.001; 30 woa), resulting in hens that were over 400-g heavier. This resulted from a delayed AFE and lower production rate under sRED, with higher intensity further hindering reproductive performance (P < 0.001). Interestingly, despite the inhibitory effect of continuous red lighting (sRED) on reproduction, dtRED resulted in a 3.15% higher rate of lay than dtGREEN. Therefore, this study suggests that while red light remains superior at stimulating reproduction, continuous red supplemental lighting results in photorefractoriness. Thus, we recommend green light in PF systems.

Light receptors in the avian brain and seasonal reproduction

Detection and transduction of photic cues by nonvisual photoreceptors, located in the deep brain, is a critical component of timing seasonal reproduction in birds. However, the precise identity of the photoreceptors responsible for detection of salient photic cues remains uncertain and debated. Here I review of the existing evidence for each of the three candidate photoreceptive opsins: Vertebrate Ancient Opsin, Melanopsin, and Neuropsin, including localization, action spectrum, and data from experimental manipulation of opsin expression. These findings are compared to an updated list of key criteria established in the literature as a litmus for classifying an opsin as the "breeding photoreceptor." Integrating evidence for each of the candidate photoreceptors with respect to these criteria reveals support for all three opsins in regulation of seasonal reproduction. Taken together these findings strongly suggest that transduction of seasonal photoperiodic information involves the activity of multiple photoreceptor types and populations functioning in concert. This review also highlights the need to shift attention from simply identifying "the breeding photoreceptor" to a more integrative approach aiming to parse the contribution of specific photoreceptor populations within the brain.

Seasonality in tropical birds

The survival of offspring depends on environmental conditions. Many organisms have evolved with seasonality, characterized as initiation-termination-reinitiation of several physiological processes (i.e., body fattening, molt, plumage coloration, reproduction, etc). It is an adaptation for the survival of many species. Predominantly seasonal breeders use photoperiod as the most reliable environmental cue to adapt to seasonal changes but supplementary factors like temperature and food are synergistically involved in seasonal processes. Studies from diverse vertebrate systems have contributed to understanding the mechanism involved in seasonal reproduction at the molecular and endocrine levels. Long-day induced thyrotropin (thyroid-stimulating hormone) released from the pars tuberalis of the pituitary gland triggers local thyroid hormone activation within the mediobasal hypothalamus. This locally produced thyroid hormone, T3, regulates seasonal gonadotropin-releasing hormone secretion. Most of the bird species studied are seasonal in reproduction and linked behavior and, therefore, need to adjust reproductive decisions to environmental fluctuations. Reproductive strategies of the temperate zone breeders are well-documented, but less is known about tropical birds' reproduction and factors stimulating the annual breeding strategies. Here, we address seasonality in tropical birds with reference to seasonal reproduction and the various environmental factors influencing seasonal breeding.

Effect of pre-hatch incubator lights on the ontogeny of CNS opsins and photoreceptors in the Pekin duck

•

Incubated eggs with and without light had no effect on post-hatch production.

•

Light does not influence the ontogeny of retinal rod and cone photoreceptors.

•

Brain OPN4 mRNA is increased the later stages of embryonic development.

The Pekin duck is a valuable agricultural commodity globally and in the United States. Pekin ducks are seasonal breeders; they are sensitive to light and thus, research on the neuroendocrine and behavioral responses are needed to maximize production and to improve their welfare. There is compelling evidence that specific wavelengths of light may adversely alter the growth and welfare of meat (grow out) ducks. However, despite a birds’ dependence upon light, in commercial poultry hatcheries, incubators almost exclusively hold eggs in the dark. Therefore, our objective was to determine the effects of lighting on the expression of retina photoreceptors (RPs) and deep brain photoreceptors (DBPs) during duck embryological development. Two groups of ducks were raised with and without light over 21 d from egg laying, embryonic day 0. Brain and retinal tissues were collected at embryonic days 3, 7, 11, 16, and 21 of a 24 d incubation period. qRT-PCR was performed on RPs (OPN1LW, OPN2SW, OPN1SW, MAFA, RHO, and RBP3) and the DBP OPN4M from retinal and brain samples, respectively. We find that the presence and absence of light during pre-hatch incubation, had no influence on the expression of any retinal photoreceptor. However, a late embryological increase in DBP OPN4M expression was observed. Taken together, the impact of light during pre-hatch incubation does not impact the overall post-hatch production. However, future directions should explore how OPN4M pre-hatch activation impacts Pekin duck post-hatch development and growth.

Sex differences in glucocorticoid responses to shipping stress in Pekin ducks

Some concerns have been raised recently about the assay of corticosterone vs. cortisol in poultry species. Thus, we tested the hypothesis that ducks secrete both glucocorticoids. First, we validated two commercially ELISA kits for the two glucocorticoids by first charcoal stripping duck serum in order to remove all steroid hormones. We ran serial dilutions of spiked, charcoal-stripped serum on kits of opposite glucocorticoid as well as a serial dilution using the respective ELISA buffer of the opposite assay kit. We found that the glucocorticoid standard curve in duck serum matched the respective curve in that kit's own buffer. However, when the opposite hormone was run in each kit in both duck serum or ELISA buffer, a near zero slope was obtained. Second, we further validated the presence of both glucocorticoids using mass spectrometry. Third, we tested the hypothesis that exogenous ACTH would stimulate the release of both corticosterone and cortisol. And, fourth, we tested the hypothesis that each glucocorticoid would have different serum levels in response to shipping stress. To test this hypothesis, we collected serum from 10 drakes and 10 hens from 2 flocks (N = 20 per time point per sex): 24 h prior to shipping, at shipping as ducks were walked off the truck, 24 h after shipping, and 1 wk after shipping. Data were analyzed by 2-way repeated measures ANOVA. Surprisingly, we also observed a sex difference in both glucocorticoid levels in that hens showed higher (P < 0.01) serum levels than did drakes at all-time points in response to either ACTH or transportation. Finally, no differences were observed in either glucocorticoid levels associated with shipping in either sex. The fact that both glucocorticoids are released in measurable amounts lends to the possibility that they may be differentially regulated, or at least there is a sex difference in the neural pathways associated with glucocorticoid release in ducks. Although corticosterone is the likely predominate glucocorticoid in ducks, serious attention should be given to the role of cortisol in poultry. Further consideration of sex, age, and timing of blood collection to stressor needs to be considered when assessing glucocorticoid levels in any avian species.

Effects of lighting regimes on performance, pineal melanopsin expression and melatonin content in native laying hens aged from 19 to 34 weeks

Melanopsin, a key light sensitive pigment, plays an important role in the regulation of bio-rhythm and photo-adaptation in poultry. This study aimed to investigate the effects of different lighting regimes on performance, pineal melanopsin expression and melatonin content in a native chicken, Beijing You Chicken (BYC) aged from 19 to 34 wk. A total of 900 nineteen-wk-old BYC female chicken having no significant body weight differences were randomly allocated to 3 groups with 3 replicates each, 100 birds each replicate, reared in individually lit floor pens with separate outdoor areas. Three different lighting regimes were used, including continuous 16 h (16L:8D, 6:00–22:00) for group 1, intermittent 16 h (12L:2D:4L:6D, 6:00–18:00, 20:00–24:00) for group 2, and continuous 12 h (12L:12D, 6:00–18:00) for group 3, respectively. The performance was measured for 19 to 34 wk. Serum melatonin (Mel), prolactin (Prl), luteinizing hormone (LH), and 17-beta estradiol (E2) contents were measured at 24 wk, 29 wk, and 34 wk of age, the relative expression of pineal melanopsin gene (Opn4 mRNA) was measured on 1 d at 9:00, 13:00, 17:00, 21:00, 1:00, and 5:00 at 29 wk of age, and at the end of 29 wk and 34 wk. The results showed that the egg mass, egg-laying rate, and feed egg ratio of BYC were not affected by lighting regimes for 19 to 34 wk (P > 0.05), except for the average feed intake (AFI) (P < 0.05). The AFI in the 12L:12D group was significantly higher than that in the 16L:8D group (P < 0.05), but had no difference with that in the 12L:2D:4L:6D group. The pineal Opn4 mRNA level was significantly upregulated in the 12L:2D:4L:6D group and downregulated in the 12L:12D group when compared with 16L:8D group at 29 and 34 wks of age (P < 0.05). The Mel content in the 16L:8D group was lower than that in the other 2 groups at 29 wk of age (P < 0.05), there was no difference in Mel content between 16L:8D group and 12L:2D:4L:6D group at 34 wk of age (P > 0.05). The present study suggested that the pineal melanopsin expression of the birds in the intermittent 16 h lighting group was higher than in the continuous 16 h and 12 h lighting group, and a significant negative correlation was found between melanopsin expression and Mel content at 34 wk of age, which may interact to promote the photo-adaptation of the native chicken and affect the future laying performance.

Centennial Review: History and husbandry recommendations for raising Pekin ducks in research or commercial production

By some accounts, ducks were domesticated between 400 and 10,000 yr ago and have been a growing portion of the poultry industry for decades. Ducks specifically, and waterfowl in general, have unique health, housing, nutrition and welfare concerns compared to their galliform counterparts. Although there have been many research publications in regards to health, nutrition, behavior, and welfare of ducks there have been very few reviews to provide an overview of these numerous studies, and only one text has attempted to review all aspects of the duck industry, from breeders to meat ducks. This review covers incubation, hatching, housing, welfare, nutrition, and euthanasia and highlights the needs for additional research at all levels of duck production. The purpose of this review is to provide guidelines to raise and house ducks for research as specifically related to industry practices.

Ontogeny of OPN4, OPN5, GnRH and GnIH mRNA Expression in the Posthatch Male and Female Pekin Duck (Anas platyrhynchos domesticus) Suggests OPN4 May Have Additional Functions beyond Reproduction

The hypothalamic-pituitary-gonadal axis (HPG) is known to be regulated by daylength through the deep brain photoreceptor (DBP) system. The post-hatch ontogeny is not known for any of the DBPs. We set out to determine the ontogeny of OPN4 and OPN5 gene expression relative to GnRH and GnIH using qRT-PCR. Brains and serum were collected from five drakes and five hens on the day of hatching (Day 0) and again at 2, 4, 6, 10, 14, 19, 25 and 31 weeks of age and analyzed by qRT-PCR. Hen and drake serum was assayed for circulating levels of estradiol and testosterone, respectively. Data were analyzed between sexes over time using a repeated measures two-way ANOVA. Interestingly, the results show that on the day of hatching (Day 0), ducks showed adult-like levels of relative OPN4, but not OPN5, gene expression. During week 10, DBP levels increased, achieving highest relative expression levels at week 19 that maintained through week 31, typically peak fertility in ducks. GnRH mRNA levels increased following the DBP expression at the onset of puberty, and gonadal steroids increased after GnRH at week 14 while estradiol preceded testosterone. GnIH mRNA levels did not appreciably change during the time course of this experiment. These observations suggest that OPN4 may be active during the peri-hatch period and may have physiological roles beyond puberty and fertility.

Exposure to Artificial Light at Night and the Consequences for Flora, Fauna, and Ecosystems

The present review draws together wide-ranging studies performed over the last decades that catalogue the effects of artificial-light-at-night (ALAN) upon living species and their environment. We provide an overview of the tremendous variety of light-detection strategies which have evolved in living organisms - unicellular, plants and animals, covering chloroplasts (plants), and the plethora of ocular and extra-ocular organs (animals). We describe the visual pigments which permit photo-detection, paying attention to their spectral characteristics, which extend from the ultraviolet into infrared. We discuss how organisms use light information in a way crucial for their development, growth and survival: phototropism, phototaxis, photoperiodism, and synchronization of circadian clocks. These aspects are treated in depth, as their perturbation underlies much of the disruptive effects of ALAN. The review goes into detail on circadian networks in living organisms, since these fundamental features are of critical importance in regulating the interface between environment and body. Especially, hormonal synthesis and secretion are often under circadian and circannual control, hence perturbation of the clock will lead to hormonal imbalance. The review addresses how the ubiquitous introduction of light-emitting diode technology may exacerbate, or in some cases reduce, the generalized ever-increasing light pollution. Numerous examples are given of how widespread exposure to ALAN is perturbing many aspects of plant and animal behaviour and survival: foraging, orientation, migration, seasonal reproduction, colonization and more. We examine the potential problems at the level of individual species and populations and extend the debate to the consequences for ecosystems. We stress, through a few examples, the synergistic harmful effects resulting from the impacts of ALAN combined with other anthropogenic pressures, which often impact the neuroendocrine loops in vertebrates. The article concludes by debating how these anthropogenic changes could be mitigated by more reasonable use of available technology - for example by restricting illumination to more essential areas and hours, directing lighting to avoid wasteful radiation and selecting spectral emissions, to reduce impact on circadian clocks. We end by discussing how society should take into account the potentially major consequences that ALAN has on the natural world and the repercussions for ongoing human health and welfare.

Photoperiodic effect on the testicular transcriptome in broiler roosters

Information about the effects of photoperiod on the testicular transcriptome of broiler roosters is limited. The aim of the present study was to explore the effect of different photoperiodic regimes on gene expression in the testes of broiler breeder roosters. One hundred and twenty Arbor Acres broiler breeder roosters aged 20 weeks were assigned to one of three groups (n = 40) and subjected to different photoperiodic regimes: control (CTR; 12.5 L:11.5 D), short day (SD; 8 L:16 D) and long day (LD; 16 L:8 D). After 4 weeks, the testes of 10 randomly selected birds from each group were dissected, sliced and haematoxylin-eosin stained. The testicular transcriptome of roosters from the SD and LD groups was determined by RNA sequencing (RNA-Seq), and the results were confirmed using quantitative real-time PCR. The seminiferous tubule area and sperm count increased significantly with the prolongation of photoperiod (p < .01). Additionally, the RNA-Seq results indicated that 387 genes were upregulated and 1,052 genes were downregulated in the LD group compared with those in the SD group. Several crucial genes involved in rooster testicular development and reproduction were also screened, including heat shock proteins 90, extracellular regulated protein kinases 1, phosphatidylinositol 3-kinase, adenosine 5'-monophosphate -activated protein kinase, BCL-6 and Smad3. The differentially expressed genes were enriched in the mammalian targets of rapamycin (mTOR), forkhead box (FoxO), transforming growth factor beta (TGF-β) and insulin signalling pathway. In conclusion, a 16 hr photoperiod for 4 weeks increased the seminiferous tubule duct area and promoted spermatogenesis in the rooster's testicles, and the mTOR, FoxO, TGF-β and insulin signalling pathways may be involved.

The quail genome: insights into social behaviour, seasonal biology and infectious disease response

BACKGROUND

The Japanese quail (Coturnix japonica) is a popular domestic poultry species and an increasingly significant model species in avian developmental, behavioural and disease research.

RESULTS

We have produced a high-quality quail genome sequence, spanning 0.93 Gb assigned to 33 chromosomes. In terms of contiguity, assembly statistics, gene content and chromosomal organisation, the quail genome shows high similarity to the chicken genome. We demonstrate the utility of this genome through three diverse applications. First, we identify selection signatures and candidate genes associated with social behaviour in the quail genome, an important agricultural and domestication trait. Second, we investigate the effects and interaction of photoperiod and temperature on the transcriptome of the quail medial basal hypothalamus, revealing key mechanisms of photoperiodism. Finally, we investigate the response of quail to H5N1 influenza infection. In quail lung, many critical immune genes and pathways were downregulated after H5N1 infection, and this may be key to the susceptibility of quail to H5N1.

CONCLUSIONS

We have produced a high-quality genome of the quail which will facilitate further studies into diverse research questions using the quail as a model avian species.

A Comparative Perspective on Extra-retinal Photoreception

Ubiquitous in non-mammalian vertebrates, extra-retinal photoreceptors (ERPs) have been linked to an array of physiological, metabolic, behavioral, and morphological changes. However, the mechanisms and functional roles of ERPs remain one of the enduring questions of modern biology. In this review article, we use a comparative framework to identify conserved roles and distributions of ERPs, highlighting knowledge gaps. We conclude that ERP research can be divided into two largely unconnected categories: (i) identification and localization of photoreceptors and (ii) linkage of non-retinal light reception to behavioral and physiological processes, particularly endocrine systems. However, the emergence of novel gene editing and silencing techniques is enabling the unification of ERP research by allowing the bridging of this divide.