Plant Secondary Metabolites—Missing Pieces in the Soil Organic Matter Puzzle of Boreal Forests

Ericoid shrubs shape fungal communities and suppress organic matter decomposition in boreal forests

Mycorrhizal fungi associated with boreal trees and ericaceous shrubs are central actors in organic matter (OM) accumulation through their belowground carbon allocation, their potential capacity to mine organic matter for nitrogen (N) and their ability to suppress saprotrophs. Yet, interactions between co-occurring ectomycorrhizal fungi (EMF), ericoid mycorrhizal fungi (ERI), and saprotrophs are poorly understood. We used a long-term (19 yr) plant functional group manipulation experiment with removals of tree roots, ericaceous shrubs and mosses and analysed the responses of different fungal guilds (assessed by metabarcoding) and their interactions in relation to OM quality (assessed by mid-infrared spectroscopy and nuclear magnetic resonance) and decomposition (litter mesh-bags) across a 5000-yr post-fire boreal forest chronosequence. We found that the removal of ericaceous shrubs and associated ERI changed the composition of EMF communities, with larger effects occurring at earlier stages of the chronosequence. Removal of shrubs was associated with enhanced N availability, litter decomposition and enrichment of the recalcitrant OM fraction. We conclude that increasing abundance of slow-growing ericaceous shrubs and the associated fungi contributes to increasing nutrient limitation, impaired decomposition and progressive OM accumulation in boreal forests, particularly towards later successional stages. These results are indicative of the contrasting roles of EMF and ERI in regulating belowground OM storage.

Legacies of invertebrate exclusion and tree secondary metabolites control fungal communities in dead wood

During decomposition of organic matter, microbial communities may follow different successional trajectories depending on the initial environment and colonizers. The timing and order of the species arrival (assembly history) can lead to divergent communities through priority effects. We explored how assembly history and resource quality affected fungal communities and decay rate of decomposing wood, 1.5 and 4.5 years after tree felling. Additionally, we investigated the effect of invertebrate exclusion during the first two summers. We measured initial resource quality of bark and wood of aspen (Populus tremula) logs and surveyed the fungal communities by DNA metabarcoding at different times during succession. We found that gradients in fungal community composition were related to resource quality and discuss how this may reflect different fungal life history strategies. As with previous studies, the initial amount of bark tannins was negatively correlated with wood decomposition rate over 4.5 years. The initial fungal community explained variation in community composition after 1.5, but not 4.5 years, of succession. Although the assembly history of initial colonizers may cause alternate trajectories in successional communities, our results indicate that the communities may converge with the arrival of secondary colonizers. We also identified a strong legacy of invertebrate exclusion on fungal communities, even after 4.5 years of succession, thereby adding crucial knowledge on the importance of invertebrates in affecting fungal community development. By measuring and manipulating aspects of assembly history and resource quality that have rarely been studied, we expand our understanding of the complexity of fungal community dynamics.

How do boreal forest soils store carbon?

Boreal forests store a globally significant pool of carbon (C), mainly in tree biomass and soil organic matter (SOM). Although crucial for future climate change predictions, the mechanisms underlying C stabilization are not well understood. Here, recently discovered mechanisms behind SOM stabilization, their level of understanding, interrelations, and future directions in the field are provided. A recently unraveled mechanism behind C stabilization via interaction of root-derived tannins with fungal necromass emphasizing fungal necromass chemistry is brought forth. The long-lasting dogma of the stability of SOM on minerals is challenged and the newest insights from the field of soil fauna and their influence on SOM stabilization are provided. In conclusion, mechanisms unraveled during the last decade are crucial steps forward to draw a holistic view of the main drivers of SOM stabilization.

Surplus Carbon Drives Allocation and Plant-Soil Interactions

Plant growth is usually constrained by the availability of nutrients, water, or temperature, rather than photosynthetic carbon (C) fixation. Under these conditions leaf growth is curtailed more than C fixation, and the surplus photosynthates are exported from the leaf. In plants limited by nitrogen (N) or phosphorus (P), photosynthates are converted into sugars and secondary metabolites. Some surplus C is translocated to roots and released as root exudates or transferred to root-associated microorganisms. Surplus C is also produced under low moisture availability, low temperature, and high atmospheric CO₂ concentrations, with similar below-ground effects. Many interactions among above- and below-ground ecosystem components can be parsimoniously explained by the production, distribution, and release of surplus C under conditions that limit plant growth.

Secondary metabolites and anti-microbial/anti-oxidant profiles in Ocimum spp.: Role of soil physico-chemical characteristics as eliciting factors

Ocimum has long been used as a medicinal plant, although little information is available about its bioactive ingredients, and the influence of soil properties on modulation of secondary metabolites in Ocimum has yet to be ascertained. In this study, we present a thorough survey of all potential metabolic compounds in O. sanctum and O. basilicum. In both species, certain compounds (e.g., quercetin, kaempferol, catechin, and S-adenosyl homocysteine) were detected coincidently. In the case of O. basilicum, other vital phenolic acids (e.g., ursolic, vanilic, coumaric, and syringic acids) were identified. The aqueous extracts (AEs) of Ocimum recorded decrease of 6-94% in the proliferation of pathogenic bacteria (e.g., Listeria monocytogenes, Staphylococcus sp., Salmonella sp., and Bacillus sp.). The AEs also showed effective antioxidant activity by reducing free radicals by a factor of 1.04-1.13. Root-zone soil samples of both Ocimum spp. were collected from strategic locations with varying levels of key soil attributes (e.g., soil organic carbon (SOC), microbial biomass carbon (MBC), urease, and phosphatase). At high levels of SOC, MBC, and soil enzymes, the bioactivity of Ocimum spp. was observed to be promoted, especially with respect to secondary metabolite expression, anti-pathogenic activity, and anti-oxidant properties. As such, the findings of strong correlations between secondary metabolite concentrations and bioactivity attributes in Ocimum suggest the potent role of soil quality in eliciting the production of secondary metabolite in association with bioactivity in Ocimum spp.

Plant Secondary Compounds in Soil and Their Role in Belowground Species Interactions

Knowledge of the effect of plant secondary compounds (PSCs) on belowground interactions in the more diffuse community of species living outside the rhizosphere is sparse compared with what we know about how PSCs affect aboveground interactions. We illustrate here that PSCs from foliar tissue, root exudates, and leaf litter effectively influence such belowground plant-plant, plant-microorganism, and plant-soil invertebrate interactions. Climatic factors can induce PSC production and select for different plant chemical types. Therefore, climate change can alter both quantitative and qualitative PSC production, and how these compounds move in the soil. This can change the soil chemical environment, with cascading effects on both the ecology and evolution of belowground species interactions and, ultimately, soil functioning.

Mechanisms of Carbon Sequestration in Highly Organic Ecosystems - Importance of Chemical Ecology

Organic matter decomposition plays a major role in the cycling of carbon (C) and nutrients in terrestrial ecosystems across the globe. Climate change accelerates the decomposition rate to potentially increase the release of greenhouse gases and further enhance global warming in the future. However, fractions of organic matter vary in turnover times and parts are stabilized in soils for longer time periods (C sequestration). Overall, a better understanding of the mechanisms underlying C sequestration is needed for the development of effective mitigation policies to reduce land-based production of greenhouse gases. Known mechanisms of C sequestration include the recalcitrance of C input, interactions with soil minerals, aggregate formation, as well as its regulation via abiotic factors. In this Minireview, we discuss the mechanisms behind C sequestration including the recently emerging significance of biochemical interactions between organic matter inputs that lead to C stabilization.