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Rong Y, Zhang G, Ye W, Qi L, Hao X, Li X, Zhang W, Chao Y, Gu S. Uncovering the Effects and Molecular Mechanisms of Shaoyao Decoction Against Colorectal Cancer Using Network Pharmacology Analysis Coupled With Experimental Validation and Gut Microbiota Analysis. Cancer Med 2025; 14:e70813. [PMID: 40119640 PMCID: PMC11928771 DOI: 10.1002/cam4.70813] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2024] [Revised: 03/12/2025] [Accepted: 03/13/2025] [Indexed: 03/24/2025] Open
Abstract
BACKGROUND Chronic gut inflammation and dysbiosis contribute significantly to colorectal cancer (CRC) development. Shaoyao decoction (SYD) is a well-established Chinese medicine prescription. Besides ameliorating CRC via anti-inflammatory effects, SYD modulates gut microbiota (GM) to improve inflammatory responses in ulcerative colitis (UC). However, whether and how SYD suppresses CRC by regulating GM remains largely unknown. METHODS SD rats were orally administered SYD for 7 days to obtain medicated serum. We utilized liquid chromatography-mass spectrometry (LC-MS) analysis, GeneCards, DisGeNET, and SwissTargetPrediction databases to analyze blank and SYD-medicated rat serum, comparing the findings with those of SYD aqueous extract in previous studies to identify SYD circulating compounds/components with predictable target genes. Using network pharmacology, the potential active compounds and corresponding hub genes associated with modulating GM to suppress CRC were selected for molecular docking. In vivo experiments, a CRC transplantation tumor model was established in BALB/c mice using CT26 cells, with SYD gavage for 14 days. To investigate the mechanism of SYD-regulated GM against CRC, HE and IHC staining, Western blotting, and 16S rRNA sequencing were employed. RESULTS LC-MS identified 26 SYD compounds with computationally predicted target genes. Network pharmacology prioritized 13 compounds targeting 8 inflammation/immunity-related genes (IL-17/TNF pathways), validated by molecular docking. In vivo experiments, SYD dose-dependently suppressed tumor growth (p < 0.05, medium/high doses), as confirmed by HE staining and IHC analysis of Ki-67. Notably, SYD potentially delayed CRC liver metastasis and alleviated hepatic injury in tumor-bearing mice. Western blotting demonstrated SYD's inhibition of the IL-17/TNF/NF-κB axis, aligning with computational predictions. 16S rRNA sequencing revealed SYD-enriched Akkermansia and GM structural shifts, mechanistically linking microbiota remodeling to anti-tumor efficacy. CONCLUSIONS SYD combats CRC via dual modulation of IL-17/TNF/NF-κB signaling and GM ecosystems (e.g., Akkermansia enrichment). This microbiota-immune crosstalk positions SYD as a potential adjunct to conventional therapies, particularly for CRC patients with dysbiosis.
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Affiliation(s)
- Yaojun Rong
- Shenzhen Bao'an Traditional Chinese Medicine Hospital, Guangzhou University of Chinese MedicineShenzhenGuangdongChina
| | - Guiyu Zhang
- Shenzhen Bao'an Traditional Chinese Medicine Hospital, Guangzhou University of Chinese MedicineShenzhenGuangdongChina
| | - Wenhao Ye
- The Seventh Clinical Medical College of Guangzhou University of Chinese MedicineShenzhenGuangdongChina
| | - Linhua Qi
- Shenzhen Bao'an Traditional Chinese Medicine Hospital, Guangzhou University of Chinese MedicineShenzhenGuangdongChina
| | - Xiaojiang Hao
- Shenzhen Bao'an Traditional Chinese Medicine Hospital, Guangzhou University of Chinese MedicineShenzhenGuangdongChina
| | - Xiaolin Li
- Shenzhen Bao'an Traditional Chinese Medicine Hospital, Guangzhou University of Chinese MedicineShenzhenGuangdongChina
| | - Wuhong Zhang
- Shenzhen Bao'an Traditional Chinese Medicine Hospital, Guangzhou University of Chinese MedicineShenzhenGuangdongChina
| | - Yangfa Chao
- Shenzhen Bao'an Traditional Chinese Medicine Hospital, Guangzhou University of Chinese MedicineShenzhenGuangdongChina
| | - Shaodong Gu
- Shenzhen Bao'an Traditional Chinese Medicine Hospital, Guangzhou University of Chinese MedicineShenzhenGuangdongChina
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Davila-Piñón P, Pedrido T, Díez-Martín AI, Herrero J, Puga M, Rivas L, Sánchez E, Zarraquiños S, Pin N, Vega P, Soto S, Remedios D, Domínguez-Carbajales R, Fdez-Riverola F, Nogueira-Rodríguez A, Glez-Peña D, Reboiro-Jato M, López-Fernández H, Cubiella J. PolyDeep Advance 1: Clinical Validation of a Computer-Aided Detection System for Colorectal Polyp Detection with a Second Observer Design. Diagnostics (Basel) 2025; 15:458. [PMID: 40002609 PMCID: PMC11854325 DOI: 10.3390/diagnostics15040458] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2024] [Revised: 02/05/2025] [Accepted: 02/11/2025] [Indexed: 02/27/2025] Open
Abstract
Background: PolyDeep is a computer-aided detection and characterization system that has demonstrated a high diagnostic yield for in vitro detection of colorectal polyps. Our objective is to compare the diagnostic performance of expert endoscopists and PolyDeep for colorectal polyp detection. Methods: PolyDeep Advance 1 (NCT05514301) is an unicentric diagnostic test study with a second observer design. Endoscopists performed colonoscopy blinded to PolyDeep's detection results. The main endpoint was the sensitivity for colorectal polyp (adenoma, serrated or hyperplastic lesion) detection. The secondary endpoints were the diagnostic performance for diminutive lesions (≤5 mm), neoplasia (adenoma, serrated lesion) and adenoma detection. Results: We included 205 patients (55.1% male, 63.0 ± 6.2 years of age) referred to colonoscopy (positive faecal immunochemical occult blood test = 60.5%, surveillance colonoscopy = 39.5%). We excluded eight patients due to incomplete colonoscopy. Endoscopists detected 384 lesions, of which 39 were not detected by PolyDeep. In contrast, PolyDeep predicted 410 possible additional lesions, 26 of these predictions confirmed by endoscopists as lesions, resulting in a potential 6.8% detection increase with respect to the 384 lesions detected by the endoscopists. In total, 410 lesions were detected, 20 were not retrieved, five were colorectal adenocarcinoma, 343 were colorectal polyps (231 adenomas, 39 serrated and 73 hyperplastic polyps), 42 were normal mucosa and 289 were ≤5 mm. We did not find statistically significant differences between endoscopists and PolyDeep for colorectal polyp detection (Sensitivity = 94.2%, 91.5%, p = 0.2; Specificity = 9.5%, 14.3%, p = 0.7), diminutive lesions (Sensitivity = 92.3%, 89.5%, p = 0.4; Specificity = 9.8%, 14.6%, p = 0.7), neoplasia (Sensitivity = 95.2%, 92.9%, p = 0.3; Specificity = 9.6%, 13.9%, p = 0.4) and adenoma detection (Sensitivity = 94.4%, 92.6%, p = 0.5; Specificity = 7.2%, 11.8%, p = 0.2). Conclusions: Expert endoscopists and PolyDeep have similar diagnostic performance for colorectal polyp detection.
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Grants
- DPI2017-87494-R MICIU/AEI/10.13039/501100011033 ERDF A way of making Europe
- PDC2021-121644-I00 by MICIU/AEI/10.13039/501100011033 European Union NextGenerationEU/PRTR
- PI21/01771 Instituto de Salud Carlos III, Madrid, Spain
- CD22/00087 Instituto de Salud Carlos III, Madrid, Spain
- INT22/00009 Instituto de Salud Carlos III, Madrid, Spain
- FI22/00203 Instituto de Salud Carlos III, Madrid, Spain
- ED431G 2019/06 Consellería de Educación, Universidades e Formación Profesional (Xunta de Galicia)
- ED431C 2022/03-GRC Consellería de Educación, Universidades e Formación Profesional (Xunta de Galicia)
- ED481B-2023-005 Consellería de Educación, Universidades e Formación Profesional (Xunta de Galicia)
- ED431G 2019/06 ERDF A way of making Europe
- ED431C 2022/03-GRC ERDF A way of making Europe
- ED481B-2023-005 ERDF A way of making Europe
- 2022 Grant of Oncology-Tamarite- Spanish Association of Gastroenterology
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Affiliation(s)
- Pedro Davila-Piñón
- Research Group in Gastrointestinal Oncology Ourense (REGGIOu), Hospital Universitario de Ourense, 32005 Ourense, Spain; (P.D.-P.); (T.P.); (A.I.D.-M.)
- Fundación Pública Galega de Investigación Biomédica Galicia Sur, Hospital Universitario de Ourense, SERGAS, 32005 Ourense, Spain
| | - Teresa Pedrido
- Research Group in Gastrointestinal Oncology Ourense (REGGIOu), Hospital Universitario de Ourense, 32005 Ourense, Spain; (P.D.-P.); (T.P.); (A.I.D.-M.)
| | - Astrid Irene Díez-Martín
- Research Group in Gastrointestinal Oncology Ourense (REGGIOu), Hospital Universitario de Ourense, 32005 Ourense, Spain; (P.D.-P.); (T.P.); (A.I.D.-M.)
- Fundación Pública Galega de Investigación Biomédica Galicia Sur, Hospital Universitario de Ourense, SERGAS, 32005 Ourense, Spain
| | - Jesús Herrero
- Department of Gastroenterology, Hospital Universitario de Ourense, Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBEREHD), 32005 Ourense, Spain; (J.H.); (M.P.); (L.R.); (E.S.); (S.Z.); (N.P.); (P.V.); (S.S.); (D.R.)
| | - Manuel Puga
- Department of Gastroenterology, Hospital Universitario de Ourense, Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBEREHD), 32005 Ourense, Spain; (J.H.); (M.P.); (L.R.); (E.S.); (S.Z.); (N.P.); (P.V.); (S.S.); (D.R.)
| | - Laura Rivas
- Department of Gastroenterology, Hospital Universitario de Ourense, Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBEREHD), 32005 Ourense, Spain; (J.H.); (M.P.); (L.R.); (E.S.); (S.Z.); (N.P.); (P.V.); (S.S.); (D.R.)
| | - Eloy Sánchez
- Department of Gastroenterology, Hospital Universitario de Ourense, Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBEREHD), 32005 Ourense, Spain; (J.H.); (M.P.); (L.R.); (E.S.); (S.Z.); (N.P.); (P.V.); (S.S.); (D.R.)
| | - Sara Zarraquiños
- Department of Gastroenterology, Hospital Universitario de Ourense, Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBEREHD), 32005 Ourense, Spain; (J.H.); (M.P.); (L.R.); (E.S.); (S.Z.); (N.P.); (P.V.); (S.S.); (D.R.)
| | - Noel Pin
- Department of Gastroenterology, Hospital Universitario de Ourense, Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBEREHD), 32005 Ourense, Spain; (J.H.); (M.P.); (L.R.); (E.S.); (S.Z.); (N.P.); (P.V.); (S.S.); (D.R.)
| | - Pablo Vega
- Department of Gastroenterology, Hospital Universitario de Ourense, Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBEREHD), 32005 Ourense, Spain; (J.H.); (M.P.); (L.R.); (E.S.); (S.Z.); (N.P.); (P.V.); (S.S.); (D.R.)
| | - Santiago Soto
- Department of Gastroenterology, Hospital Universitario de Ourense, Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBEREHD), 32005 Ourense, Spain; (J.H.); (M.P.); (L.R.); (E.S.); (S.Z.); (N.P.); (P.V.); (S.S.); (D.R.)
| | - David Remedios
- Department of Gastroenterology, Hospital Universitario de Ourense, Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBEREHD), 32005 Ourense, Spain; (J.H.); (M.P.); (L.R.); (E.S.); (S.Z.); (N.P.); (P.V.); (S.S.); (D.R.)
| | | | - Florentino Fdez-Riverola
- Department of Computer Science, Escuela Superior de Ingenieria Informática (ESEI), CINBIO, University of Vigo, 32004 Ourense, Spain; (F.F.-R.); (A.N.-R.); (D.G.-P.); (M.R.-J.)
- Next Generation Computer Systems Group (SING) Research Group, Galicia Sur Health Research Institute (IIS Galicia Sur), 32004 Ourense, Spain
| | - Alba Nogueira-Rodríguez
- Department of Computer Science, Escuela Superior de Ingenieria Informática (ESEI), CINBIO, University of Vigo, 32004 Ourense, Spain; (F.F.-R.); (A.N.-R.); (D.G.-P.); (M.R.-J.)
- Next Generation Computer Systems Group (SING) Research Group, Galicia Sur Health Research Institute (IIS Galicia Sur), 32004 Ourense, Spain
- Instituto de Investigação e Inovação em Saúde (i3S), Universidade do Porto, Rua Alfredo Allen 208, 4200-135 Porto, Portugal
| | - Daniel Glez-Peña
- Department of Computer Science, Escuela Superior de Ingenieria Informática (ESEI), CINBIO, University of Vigo, 32004 Ourense, Spain; (F.F.-R.); (A.N.-R.); (D.G.-P.); (M.R.-J.)
- Next Generation Computer Systems Group (SING) Research Group, Galicia Sur Health Research Institute (IIS Galicia Sur), 32004 Ourense, Spain
| | - Miguel Reboiro-Jato
- Department of Computer Science, Escuela Superior de Ingenieria Informática (ESEI), CINBIO, University of Vigo, 32004 Ourense, Spain; (F.F.-R.); (A.N.-R.); (D.G.-P.); (M.R.-J.)
- Next Generation Computer Systems Group (SING) Research Group, Galicia Sur Health Research Institute (IIS Galicia Sur), 32004 Ourense, Spain
| | - Hugo López-Fernández
- Department of Computer Science, Escuela Superior de Ingenieria Informática (ESEI), CINBIO, University of Vigo, 32004 Ourense, Spain; (F.F.-R.); (A.N.-R.); (D.G.-P.); (M.R.-J.)
- Next Generation Computer Systems Group (SING) Research Group, Galicia Sur Health Research Institute (IIS Galicia Sur), 32004 Ourense, Spain
| | - Joaquín Cubiella
- Research Group in Gastrointestinal Oncology Ourense (REGGIOu), Hospital Universitario de Ourense, 32005 Ourense, Spain; (P.D.-P.); (T.P.); (A.I.D.-M.)
- Department of Gastroenterology, Hospital Universitario de Ourense, Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBEREHD), 32005 Ourense, Spain; (J.H.); (M.P.); (L.R.); (E.S.); (S.Z.); (N.P.); (P.V.); (S.S.); (D.R.)
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Al‐Qudimat AR, Fares ZE, Elaarag M, Osman M, Al‐Zoubi RM, Aboumarzouk OM. Advancing Medical Research Through Artificial Intelligence: Progressive and Transformative Strategies: A Literature Review. Health Sci Rep 2025; 8:e70200. [PMID: 39980823 PMCID: PMC11839394 DOI: 10.1002/hsr2.70200] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2023] [Revised: 07/23/2024] [Accepted: 10/28/2024] [Indexed: 02/22/2025] Open
Abstract
Background and Aims Artificial intelligence (AI) has become integral to medical research, impacting various aspects such as data analysis, writing assistance, and publishing. This paper explores the multifaceted influence of AI on the process of writing medical research papers, encompassing data analysis, ethical considerations, writing assistance, and publishing efficiency. Methods The review was conducted following the PRISMA guidelines; a comprehensive search was performed in Scopus, PubMed, EMBASE, and MEDLINE databases for research publications on artificial intelligence in medical research published up to October 2023. Results AI facilitates the writing process by generating drafts, offering grammar and style suggestions, and enhancing manuscript quality through advanced models like ChatGPT. Ethical concerns regarding content ownership and potential biases in AI-generated content underscore the need for collaborative efforts among researchers, publishers, and AI creators to establish ethical standards. Moreover, AI significantly influences data analysis in healthcare, optimizing outcomes and patient care, particularly in fields such as obstetrics and gynecology and pharmaceutical research. The application of AI in publishing, ranging from peer review to manuscript quality control and journal matching, underscores its potential to streamline and enhance the entire research and publication process. Overall, while AI presents substantial benefits, ongoing research, and ethical guidelines are essential for its responsible integration into the evolving landscape of medical research and publishing. Conclusion The integration of AI in medical research has revolutionized efficiency and innovation, impacting data analysis, writing assistance, publishing, and others. While AI tools offer significant benefits, ethical considerations such as biases and content ownership must be addressed. Ongoing research and collaborative efforts are crucial to ensure responsible and transparent AI implementation in the dynamic landscape of medical research and publishing.
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Affiliation(s)
- Ahmad R. Al‐Qudimat
- Department of Surgery, Hamad Medical CorporationSurgical Research SectionDohaQatar
- Department of Public Health, College of Health Sciences, QU‐HealthQatar UniversityDohaQatar
| | - Zainab E. Fares
- Department of Surgery, Hamad Medical CorporationSurgical Research SectionDohaQatar
| | - Mai Elaarag
- Department of Surgery, Hamad Medical CorporationSurgical Research SectionDohaQatar
| | - Maha Osman
- Department of Public Health, College of Health Sciences, QU‐HealthQatar UniversityDohaQatar
| | - Raed M. Al‐Zoubi
- Department of Surgery, Hamad Medical CorporationSurgical Research SectionDohaQatar
- Department of Biomedical Sciences, College of Health Sciences, QU‐HealthQatar UniversityDohaQatar
- Department of Chemistry, College of ScienceJordan University of Science and TechnologyIrbidJordan
| | - Omar M. Aboumarzouk
- Department of Surgery, Hamad Medical CorporationSurgical Research SectionDohaQatar
- School of Medicine, Dentistry and NursingThe University of GlasgowGlasgowUK
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Saha S, Ghosh S, Ghosh S, Nandi S, Nayak A. Unraveling the complexities of colorectal cancer and its promising therapies - An updated review. Int Immunopharmacol 2024; 143:113325. [PMID: 39405944 DOI: 10.1016/j.intimp.2024.113325] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2024] [Revised: 10/01/2024] [Accepted: 10/02/2024] [Indexed: 10/30/2024]
Abstract
Colorectal cancer (CRC) continues to be a global health concern, necessitating further research into its complex biology and innovative treatment approaches. The etiology, pathogenesis, diagnosis, and treatment of colorectal cancer are summarized in this thorough review along with recent developments. The multifactorial nature of colorectal cancer is examined, including genetic predispositions, environmental factors, and lifestyle decisions. The focus is on deciphering the complex interactions between signaling pathways such as Wnt/β-catenin, MAPK, TGF-β as well as PI3K/AKT that participate in the onset, growth, and metastasis of CRC. There is a discussion of various diagnostic modalities that span from traditional colonoscopy to sophisticated molecular techniques like liquid biopsy and radiomics, emphasizing their functions in early identification, prognostication, and treatment stratification. The potential of artificial intelligence as well as machine learning algorithms in improving accuracy as well as efficiency in colorectal cancer diagnosis and management is also explored. Regarding therapy, the review provides a thorough overview of well-known treatments like radiation, chemotherapy, and surgery as well as delves into the newly-emerging areas of targeted therapies as well as immunotherapies. Immune checkpoint inhibitors as well as other molecularly targeted treatments, such as anti-epidermal growth factor receptor (anti-EGFR) as well as anti-vascular endothelial growth factor (anti-VEGF) monoclonal antibodies, show promise in improving the prognosis of colorectal cancer patients, in particular, those suffering from metastatic disease. This review focuses on giving readers a thorough understanding of colorectal cancer by considering its complexities, the present status of treatment, and potential future paths for therapeutic interventions. Through unraveling the intricate web of this disease, we can develop a more tailored and effective approach to treating CRC.
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Affiliation(s)
- Sayan Saha
- Guru Nanak Institute of Pharmaceutical Science and Technology, 157/F, Nilgunj Rd, Sahid Colony, Panihati, Kolkata, West Bengal 700114, India
| | - Shreya Ghosh
- Guru Nanak Institute of Pharmaceutical Science and Technology, 157/F, Nilgunj Rd, Sahid Colony, Panihati, Kolkata, West Bengal 700114, India
| | - Suman Ghosh
- Guru Nanak Institute of Pharmaceutical Science and Technology, 157/F, Nilgunj Rd, Sahid Colony, Panihati, Kolkata, West Bengal 700114, India
| | - Sumit Nandi
- Department of Pharmacology, Gupta College of Technological Sciences, Asansol, West Bengal 713301, India
| | - Aditi Nayak
- Guru Nanak Institute of Pharmaceutical Science and Technology, 157/F, Nilgunj Rd, Sahid Colony, Panihati, Kolkata, West Bengal 700114, India.
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Xu Z, Miao Y, Chen G, Liu S, Chen H. GLGFormer: Global Local Guidance Network for Mucosal Lesion Segmentation in Gastrointestinal Endoscopy Images. JOURNAL OF IMAGING INFORMATICS IN MEDICINE 2024; 37:2983-2995. [PMID: 38940891 PMCID: PMC11612111 DOI: 10.1007/s10278-024-01162-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2024] [Revised: 05/05/2024] [Accepted: 06/03/2024] [Indexed: 06/29/2024]
Abstract
Automatic mucosal lesion segmentation is a critical component in computer-aided clinical support systems for endoscopic image analysis. Image segmentation networks currently rely mainly on convolutional neural networks (CNNs) and Transformers, which have demonstrated strong performance in various applications. However, they cannot cope with blurred lesion boundaries and lesions of different scales in gastrointestinal endoscopy images. To address these challenges, we propose a new Transformer-based network, named GLGFormer, for the task of mucosal lesion segmentation. Specifically, we design the global guidance module to guide single-scale features patch-wise, enabling them to incorporate global information from the global map without information loss. Furthermore, a partial decoder is employed to fuse these enhanced single-scale features, achieving single-scale to multi-scale enhancement. Additionally, the local guidance module is designed to refocus attention on the neighboring patch, thus enhancing local features and refining lesion boundary segmentation. We conduct experiments on a private atrophic gastritis segmentation dataset and four public gastrointestinal polyp segmentation datasets. Compared to the current lesion segmentation networks, our proposed GLGFormer demonstrates outstanding learning and generalization capabilities. On the public dataset ClinicDB, GLGFormer achieved a mean intersection over union (mIoU) of 91.0% and a mean dice coefficient (mDice) of 95.0%. On the private dataset Gastritis-Seg, GLGFormer achieved an mIoU of 90.6% and an mDice of 94.6%.
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Affiliation(s)
- Zhiyang Xu
- Engineering Research Center of Intelligent Control for Underground Space, Ministry of Education, School of Information and Control Engineering, Advanced Robotics Research Center, China University of Mining and Technology, Xuzhou, Jiangsu, 221116, P. R. China
| | - Yanzi Miao
- Engineering Research Center of Intelligent Control for Underground Space, Ministry of Education, School of Information and Control Engineering, Advanced Robotics Research Center, China University of Mining and Technology, Xuzhou, Jiangsu, 221116, P. R. China.
| | - Guangxia Chen
- Department of Gastroenterology, Xuzhou Municipal Hospital Affiliated to Xuzhou Medical University, Xuzhou, Jiangsu, 221002, P. R. China
| | - Shiyu Liu
- Department of Gastroenterology, Xuzhou Municipal Hospital Affiliated to Xuzhou Medical University, Xuzhou, Jiangsu, 221002, P. R. China
| | - Hu Chen
- The First Clinical Medical School of Xuzhou Medical University, Xuzhou, Jiangsu, 221002, P. R. China
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Liu W, Qu A, Yuan J, Wang L, Chen J, Zhang X, Wang H, Han Z, Li Y. Colorectal cancer histopathology image analysis: A comparative study of prognostic values of automatically extracted morphometric nuclear features in multispectral and red-blue-green imagery. Histol Histopathol 2024; 39:1303-1316. [PMID: 38343355 DOI: 10.14670/hh-18-715] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/22/2024]
Abstract
OBJECTIVES Multispectral imaging (MSI) has been utilized to predict the prognosis of colorectal cancer (CRC) patients, however, our understanding of the prognostic value of nuclear morphological parameters of bright-field MSI in CRC is still limited. This study was designed to compare the efficiency of MSI and standard red-green-blue (RGB) images in predicting the prognosis of CRC. METHODS We compared the efficiency of MS and conventional RGB images on the quantitative assessment of hematoxylin-eosin (HE) stained histopathology images. A pipeline was developed using a pixel-wise support vector machine (SVM) classifier for gland-stroma segmentation, and a marker-controlled watershed algorithm was used for nuclei segmentation. The correlation between extracted morphological parameters and the five-year disease-free survival (5-DFS) was analyzed. RESULTS Forty-seven nuclear morphological parameters were extracted in total. Based on Kaplan-Meier analysis, eight features derived from MS images and seven featured derived from RGB images were significantly associated with 5-DFS, respectively. Compared with RGB images, MSI showed higher accuracy, precision, and Dice index in nuclei segmentation. Multivariate analysis indicated that both integrated parameters 1 (factors negatively correlated with CRC prognosis including nuclear number, circularity, eccentricity, major axis length) and 2 (factors positively correlated with CRC prognosis including nuclear average area, area perimeter, total area/total perimeter ratio, average area/perimeter ratio) in MS images were independent prognostic factors of 5-DFS, in contrast with only integrated parameter 1 (P<0.001) in RGB images. More importantly, the quantification of HE-stained MS images displayed higher accuracy in predicting 5-DFS compared with RGB images (76.9% vs 70.9%). CONCLUSIONS Quantitative evaluation of HE-stained MS images could yield more information and better predictive performance for CRC prognosis than conventional RGB images, thereby contributing to precision oncology.
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Affiliation(s)
- Wenlou Liu
- Department of Oncology, Affiliated Hospital of Xuzhou Medical University, Xuzhou, China
| | - Aiping Qu
- School of Computer, University of South China, Hengyang, China
| | - Jingping Yuan
- Department of Pathology, Renmin Hospital of Wuhan University, Wuhan, China
| | - Linwei Wang
- Department of Oncology, Zhongnan Hospital of Wuhan University, Wuhan, China
| | - Jiamei Chen
- Department of Oncology, Renmin Hospital of Wuhan University, Wuhan, China
| | - Xiuli Zhang
- Department of Radiology, Affiliated Hospital of Xuzhou Medical University, Xuzhou, China
| | - Hongmei Wang
- Department of Oncology, Affiliated Hospital of Xuzhou Medical University, Xuzhou, China
| | - Zhengxiang Han
- Department of Oncology, Affiliated Hospital of Xuzhou Medical University, Xuzhou, China.
| | - Yan Li
- Department of Cancer Surgery, Beijing Tsinghua Changgung Hospital, Tsinghua University, Beijing, China.
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Qi SY, Zhang SJ, Lin LL, Li YR, Chen JG, Ni YC, Du X, Zhang J, Ge P, Liu GH, Wu JY, Lin S, Gong M, Lin JW, Chen LF, He LL, Lin D. Quantifying attention in children with intellectual and developmental disabilities through multicenter electrooculogram signal analysis. Sci Rep 2024; 14:22186. [PMID: 39333619 PMCID: PMC11437286 DOI: 10.1038/s41598-024-70304-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2024] [Accepted: 08/14/2024] [Indexed: 09/29/2024] Open
Abstract
In a multicenter case-control investigation, we assessed the efficacy of the Electrooculogram Signal Analysis (EOG-SA) method, which integrates attention-related visual evocation, electrooculography, and nonlinear analysis, for distinguishing between intellectual and developmental disabilities (IDD) and typical development (TD) in children. Analyzing 127 participants (63 IDD, 64 TD), we applied nonlinear dynamics for feature extraction. Results indicated EOG-SA's capability to distinguish IDD, with higher template thresholds and Correlation Dimension values correlating with clinical severity. The template threshold proved a robust indicator, with higher values denoting severe IDD. Discriminative metrics showed areas under the curve of 0.91 (template threshold) and 0.85/0.91 (D2), with sensitivities and specificities of 77.6%/95.9% and 93.5%/71.0%, respectively. EOG-SA emerges as a promising tool, offering interpretable neural biomarkers for early and nuanced diagnosis of IDD.
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Affiliation(s)
- Shi-Yi Qi
- Department of Acupuncture and Tuina, Fujian University of Traditional Chinese Medicine, Fuzhou, Fujian Province, China
| | - Si-Jia Zhang
- Department of Acupuncture and Tuina, Fujian University of Traditional Chinese Medicine, Fuzhou, Fujian Province, China
- Tongxiang Hospital of Traditional Chinese Medicine, Tongxiang, Zhejiang Province, China
| | - Li-Li Lin
- Department of Acupuncture and Tuina, Fujian University of Traditional Chinese Medicine, Fuzhou, Fujian Province, China
- Institute of Acupuncture and Meridian, Fujian Academy of Chinese Medical Sciences, Fuzhou, Fujian Province, China
| | - Yu-Rong Li
- Department of Electrical Engineering and Automation, Fuzhou University, Fuzhou, Fujian Province, China
| | - Jian-Guo Chen
- Department of Electrical Engineering and Automation, Fuzhou University, Fuzhou, Fujian Province, China
| | - You-Cong Ni
- School of Computer and Cyberspace Security, Fujian Normal University, Fuzhou, Fujian Province, China
| | - Xin Du
- School of Computer and Cyberspace Security, Fujian Normal University, Fuzhou, Fujian Province, China
| | - Jie Zhang
- Department of Rehabilitation, The Affiliated People's Hospital of Fujian University of Traditional Chinese Medicine, Fuzhou, Fujian Province, China
| | - Pin Ge
- Fujian Maternity and Child Health Hospital, Fuzhou, Fujian Province, China
| | - Gui-Hua Liu
- Fujian Maternity and Child Health Hospital, Fuzhou, Fujian Province, China
| | - Jiang-Yun Wu
- Department of Rehabilitation, The Third People's Hospital Affiliated to Fujian University of Traditional Chinese Medicine, Fuzhou, Fujian Province, China
- College of Rehabilitation Medicine, Fujian University of Traditional Chinese Medicine, Fuzhou, Fujian Province, China
| | - Shen Lin
- Fujian Maternity and Child Health Hospital, Fuzhou, Fujian Province, China
| | - Meng Gong
- Department of Acupuncture and Tuina, Fujian University of Traditional Chinese Medicine, Fuzhou, Fujian Province, China
| | - Jin-Wen Lin
- Department of Acupuncture and Tuina, Fujian University of Traditional Chinese Medicine, Fuzhou, Fujian Province, China
| | - Lan-Fang Chen
- Department of Rehabilitation, The Third People's Hospital Affiliated to Fujian University of Traditional Chinese Medicine, Fuzhou, Fujian Province, China
| | - Ling-Ling He
- Department of Acupuncture and Tuina, Fujian University of Traditional Chinese Medicine, Fuzhou, Fujian Province, China
| | - Dong Lin
- Department of Acupuncture and Tuina, Fujian University of Traditional Chinese Medicine, Fuzhou, Fujian Province, China.
- Department of Rehabilitation, The Third People's Hospital Affiliated to Fujian University of Traditional Chinese Medicine, Fuzhou, Fujian Province, China.
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潘 兴, 童 珂, 鄢 成, 罗 金, 杨 华, 丁 菊. [Research progress on colorectal cancer identification based on convolutional neural network]. SHENG WU YI XUE GONG CHENG XUE ZA ZHI = JOURNAL OF BIOMEDICAL ENGINEERING = SHENGWU YIXUE GONGCHENGXUE ZAZHI 2024; 41:854-860. [PMID: 39218614 PMCID: PMC11366468 DOI: 10.7507/1001-5515.202310027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Revised: 05/24/2024] [Indexed: 09/04/2024]
Abstract
Colorectal cancer (CRC) is a common malignant tumor that seriously threatens human health. CRC presents a formidable challenge in terms of accurate identification due to its indistinct boundaries. With the widespread adoption of convolutional neural networks (CNNs) in image processing, leveraging CNNs for automatic classification and segmentation holds immense potential for enhancing the efficiency of colorectal cancer recognition and reducing treatment costs. This paper explores the imperative necessity for applying CNNs in clinical diagnosis of CRC. It provides an elaborate overview on research advancements pertaining to CNNs and their improved models in CRC classification and segmentation. Furthermore, this work summarizes the ideas and common methods for optimizing network performance and discusses the challenges faced by CNNs as well as future development trends in their application towards CRC classification and segmentation, thereby promoting their utilization within clinical diagnosis.
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Affiliation(s)
- 兴亮 潘
- 四川轻化工大学 自动化与信息工程学院(四川自贡 643000)The School of Automation and Information Engineering, Sichuan University of Science and Engineering, Zigong, Sichuan 643000, P. R. China
- 四川轻化工大学 人工智能四川省重点实验室(四川自贡 643000)The Artificial Intelligence Key Laboratory of Sichuan Province, Sichuan University of Science and Engineering, Zigong, Sichuan 643000, P. R. China
| | - 珂 童
- 四川轻化工大学 自动化与信息工程学院(四川自贡 643000)The School of Automation and Information Engineering, Sichuan University of Science and Engineering, Zigong, Sichuan 643000, P. R. China
- 四川轻化工大学 人工智能四川省重点实验室(四川自贡 643000)The Artificial Intelligence Key Laboratory of Sichuan Province, Sichuan University of Science and Engineering, Zigong, Sichuan 643000, P. R. China
| | - 成东 鄢
- 四川轻化工大学 自动化与信息工程学院(四川自贡 643000)The School of Automation and Information Engineering, Sichuan University of Science and Engineering, Zigong, Sichuan 643000, P. R. China
- 四川轻化工大学 人工智能四川省重点实验室(四川自贡 643000)The Artificial Intelligence Key Laboratory of Sichuan Province, Sichuan University of Science and Engineering, Zigong, Sichuan 643000, P. R. China
| | - 金龙 罗
- 四川轻化工大学 自动化与信息工程学院(四川自贡 643000)The School of Automation and Information Engineering, Sichuan University of Science and Engineering, Zigong, Sichuan 643000, P. R. China
| | - 华 杨
- 四川轻化工大学 自动化与信息工程学院(四川自贡 643000)The School of Automation and Information Engineering, Sichuan University of Science and Engineering, Zigong, Sichuan 643000, P. R. China
| | - 菊容 丁
- 四川轻化工大学 自动化与信息工程学院(四川自贡 643000)The School of Automation and Information Engineering, Sichuan University of Science and Engineering, Zigong, Sichuan 643000, P. R. China
- 四川轻化工大学 人工智能四川省重点实验室(四川自贡 643000)The Artificial Intelligence Key Laboratory of Sichuan Province, Sichuan University of Science and Engineering, Zigong, Sichuan 643000, P. R. China
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Zhang J, Zhang J, Jin J, Jiang X, Yang L, Fan S, Zhang Q, Chi M. Artificial intelligence applied in cardiovascular disease: a bibliometric and visual analysis. Front Cardiovasc Med 2024; 11:1323918. [PMID: 38433757 PMCID: PMC10904648 DOI: 10.3389/fcvm.2024.1323918] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Accepted: 01/19/2024] [Indexed: 03/05/2024] Open
Abstract
Background With the rapid development of technology, artificial intelligence (AI) has been widely used in the diagnosis and prognosis prediction of a variety of diseases, including cardiovascular disease. Facts have proved that AI has broad application prospects in rapid and accurate diagnosis. Objective This study mainly summarizes the research on the application of AI in the field of cardiovascular disease through bibliometric analysis and explores possible future research hotpots. Methods The articles and reviews regarding application of AI in cardiovascular disease between 2000 and 2023 were selected from Web of Science Core Collection on 30 December 2023. Microsoft Excel 2019 was applied to analyze the targeted variables. VOSviewer (version 1.6.16), Citespace (version 6.2.R2), and a widely used online bibliometric platform were used to conduct co-authorship, co-citation, and co-occurrence analysis of countries, institutions, authors, references, and keywords in this field. Results A total of 4,611 articles were selected in this study. AI-related research on cardiovascular disease increased exponentially in recent years, of which the USA was the most productive country with 1,360 publications, and had close cooperation with many countries. The most productive institutions and researchers were the Cedar sinai medical center and Acharya, Ur. However, the cooperation among most institutions or researchers was not close even if the high research outputs. Circulation is the journal with the largest number of publications in this field. The most important keywords are "classification", "diagnosis", and "risk". Meanwhile, the current research hotpots were "late gadolinium enhancement" and "carotid ultrasound". Conclusions AI has broad application prospects in cardiovascular disease, and a growing number of scholars are devoted to AI-related research on cardiovascular disease. Cardiovascular imaging techniques and the selection of appropriate algorithms represent the most extensively studied areas, and a considerable boost in these areas is predicted in the coming years.
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Affiliation(s)
- Jirong Zhang
- Graduate School, Heilongjiang University of Chinese Medicine, Harbin, Heilongjiang, China
| | - Jimei Zhang
- College of Public Health, The University of Sydney, NSW, Sydney, Australia
| | - Juan Jin
- The First Department of Cardiovascular, First Affiliated Hospital of Heilongjiang University of Chinese Medicine, Harbin, HL, China
| | - Xicheng Jiang
- College of basic medicine, Heilongjiang University of Chinese Medicine, Harbin, HL, China
| | - Linlin Yang
- Cardiovascular Disease Branch, Dalian Second People's Hospital, Dalian, LN, China
| | - Shiqi Fan
- Harbin hospital of traditional Chinese medicine, Harbin, HL, China
| | - Qiao Zhang
- School of Pharmacy, Harbin University of Commerce, Harbin, HL, China
| | - Ming Chi
- Graduate School, Heilongjiang University of Chinese Medicine, Harbin, Heilongjiang, China
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Lei J, Huang Y, Chen Y, Xia L, Yi B. The effect of the re-segmentation method on improving the performance of rectal cancer image segmentation models. Technol Health Care 2024; 32:1629-1640. [PMID: 38517809 DOI: 10.3233/thc-230690] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/24/2024]
Abstract
BACKGROUND Rapid and accurate segmentation of tumor regions from rectal cancer images can better understand the patientâs lesions and surrounding tissues, providing more effective auxiliary diagnostic information. However, cutting rectal tumors with deep learning still cannot be compared with manual segmentation, and a major obstacle to cutting rectal tumors with deep learning is the lack of high-quality data sets. OBJECTIVE We propose to use our Re-segmentation Method to manually correct the model segmentation area and put it into training and training ideas. The data set has been made publicly available. Methods: A total of 354 rectal cancer CT images and 308 rectal region images labeled by experts from Jiangxi Cancer Hospital were included in the data set. Six network architectures are used to train the data set, and the region predicted by the model is manually revised and then put into training to improve the ability of model segmentation and then perform performance measurement. RESULTS In this study, we use the Resegmentation Method for various popular network architectures. CONCLUSION By comparing the evaluation indicators before and after using the Re-segmentation Method, we prove that our proposed Re-segmentation Method can further improve the performance of the rectal cancer image segmentation model.
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Affiliation(s)
- Jie Lei
- School of Software, Nanchang University, Nanchang, Jiangxi, China
- School of Software, Nanchang University, Nanchang, Jiangxi, China
| | - YiJun Huang
- School of Software, Nanchang University, Nanchang, Jiangxi, China
- School of Software, Nanchang University, Nanchang, Jiangxi, China
| | - YangLin Chen
- Jiangxi Cancer Hospital, Nanchang, Jiangxi, China
- School of Software, Nanchang University, Nanchang, Jiangxi, China
| | - Linglin Xia
- School of Software, Nanchang University, Nanchang, Jiangxi, China
| | - Bo Yi
- Jiangxi Cancer Hospital, Nanchang, Jiangxi, China
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11
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Suma KG, Sunitha G, Galety MG. SCRNN. ADVANCES IN SYSTEMS ANALYSIS, SOFTWARE ENGINEERING, AND HIGH PERFORMANCE COMPUTING 2023:276-294. [DOI: 10.4018/978-1-6684-8531-6.ch014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2025]
Abstract
Colorectal cancer holds a prominent place on the global health landscape. Its early detection is crucial for successful patient outcomes. Histological analysis of tissue samples plays an indispensable role in diagnosing and classifying colorectal cancer. Accurate classification is paramount, as it influences the choice of treatment and patient prognosis. This chapter investigates the statistics surrounding colorectal cancer, its vital role in the healthcare sector, and the transformative potential of artificial intelligence in automating its diagnosis. This chapter proposes a ShuffleNetV2-CRNN (SCRNN), a novel deep learning architecture designed for colorectal cancer classification from histological images. SCRNN combines the efficiency of ShuffleNetV2 for feature extraction with the context-awareness of a convolutional-recurrent neural network for precise classification. SCRNN is evaluated against chosen deep models – Simple CNN, vGG16, ResNet-18, and MobileNet. Experimental results demonstrate appreciable performance of SCRNN across a diverse range of tissue types.
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Lu N, Guan X, Zhu J, Li Y, Zhang J. A Contrast-Enhanced CT-Based Deep Learning System for Preoperative Prediction of Colorectal Cancer Staging and RAS Mutation. Cancers (Basel) 2023; 15:4497. [PMID: 37760468 PMCID: PMC10526233 DOI: 10.3390/cancers15184497] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Revised: 09/04/2023] [Accepted: 09/08/2023] [Indexed: 09/29/2023] Open
Abstract
PURPOSE This study aimed to build a deep learning system using enhanced computed tomography (CT) portal-phase images for predicting colorectal cancer patients' preoperative staging and RAS gene mutation status. METHODS The contrast-enhanced CT image dataset comprises the CT portal-phase images from a retrospective cohort of 231 colorectal cancer patients. The deep learning system was developed via migration learning for colorectal cancer detection, staging, and RAS gene mutation status prediction. This study used pre-trained Yolov7, vision transformer (VIT), swin transformer (SWT), EfficientNetV2, and ConvNeXt. 4620, and contrast-enhanced CT images and annotated tumor bounding boxes were included in the tumor identification and staging dataset. A total of 19,700 contrast-enhanced CT images comprise the RAS gene mutation status prediction dataset. RESULTS In the validation cohort, the Yolov7-based detection model detected and staged tumors with a mean accuracy precision (IoU = 0.5) (mAP_0.5) of 0.98. The area under the receiver operating characteristic curve (AUC) in the test set and validation set for the VIT-based prediction model in predicting the mutation status of the RAS genes was 0.9591 and 0.9554, respectively. The detection network and prediction network of the deep learning system demonstrated great performance in explaining contrast-enhanced CT images. CONCLUSION In this study, a deep learning system was created based on the foundation of contrast-enhanced CT portal-phase imaging to preoperatively predict the stage and RAS mutation status of colorectal cancer patients. This system will help clinicians choose the best treatment option to increase colorectal cancer patients' chances of survival and quality of life.
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Affiliation(s)
- Na Lu
- Department of General Surgery, The Second Affiliated Hospital of Nanjing Medical University, No. 121, Jiangjiayuan Road, Nanjing 210011, China (X.G.)
| | - Xiao Guan
- Department of General Surgery, The Second Affiliated Hospital of Nanjing Medical University, No. 121, Jiangjiayuan Road, Nanjing 210011, China (X.G.)
| | - Jianguo Zhu
- Department of Radiology, The Second Affiliated Hospital of Nanjing Medical University, Nanjing 210011, China;
| | - Yuan Li
- Key Laboratory of Modern Toxicology, Ministry of Education, School of Public Health, Nanjing Medical University, Nanjing 211166, China;
| | - Jianping Zhang
- Department of General Surgery, The Second Affiliated Hospital of Nanjing Medical University, No. 121, Jiangjiayuan Road, Nanjing 210011, China (X.G.)
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Hou J, Zhao R, Gronsbell J, Lin Y, Bonzel CL, Zeng Q, Zhang S, Beaulieu-Jones BK, Weber GM, Jemielita T, Wan SS, Hong C, Cai T, Wen J, Ayakulangara Panickan V, Liaw KL, Liao K, Cai T. Generate Analysis-Ready Data for Real-world Evidence: Tutorial for Harnessing Electronic Health Records With Advanced Informatic Technologies. J Med Internet Res 2023; 25:e45662. [PMID: 37227772 PMCID: PMC10251230 DOI: 10.2196/45662] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Revised: 03/31/2023] [Accepted: 04/05/2023] [Indexed: 05/26/2023] Open
Abstract
Although randomized controlled trials (RCTs) are the gold standard for establishing the efficacy and safety of a medical treatment, real-world evidence (RWE) generated from real-world data has been vital in postapproval monitoring and is being promoted for the regulatory process of experimental therapies. An emerging source of real-world data is electronic health records (EHRs), which contain detailed information on patient care in both structured (eg, diagnosis codes) and unstructured (eg, clinical notes and images) forms. Despite the granularity of the data available in EHRs, the critical variables required to reliably assess the relationship between a treatment and clinical outcome are challenging to extract. To address this fundamental challenge and accelerate the reliable use of EHRs for RWE, we introduce an integrated data curation and modeling pipeline consisting of 4 modules that leverage recent advances in natural language processing, computational phenotyping, and causal modeling techniques with noisy data. Module 1 consists of techniques for data harmonization. We use natural language processing to recognize clinical variables from RCT design documents and map the extracted variables to EHR features with description matching and knowledge networks. Module 2 then develops techniques for cohort construction using advanced phenotyping algorithms to both identify patients with diseases of interest and define the treatment arms. Module 3 introduces methods for variable curation, including a list of existing tools to extract baseline variables from different sources (eg, codified, free text, and medical imaging) and end points of various types (eg, death, binary, temporal, and numerical). Finally, module 4 presents validation and robust modeling methods, and we propose a strategy to create gold-standard labels for EHR variables of interest to validate data curation quality and perform subsequent causal modeling for RWE. In addition to the workflow proposed in our pipeline, we also develop a reporting guideline for RWE that covers the necessary information to facilitate transparent reporting and reproducibility of results. Moreover, our pipeline is highly data driven, enhancing study data with a rich variety of publicly available information and knowledge sources. We also showcase our pipeline and provide guidance on the deployment of relevant tools by revisiting the emulation of the Clinical Outcomes of Surgical Therapy Study Group Trial on laparoscopy-assisted colectomy versus open colectomy in patients with early-stage colon cancer. We also draw on existing literature on EHR emulation of RCTs together with our own studies with the Mass General Brigham EHR.
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Affiliation(s)
- Jue Hou
- Division of Biostatistics, School of Public Health, University of Minnesota, Minneapolis, MN, United States
| | - Rachel Zhao
- Department of Medicine, University of British Columbia, Vancouver, BC, Canada
| | - Jessica Gronsbell
- Department of Statistical Sciences, University of Toronto, Toronto, ON, Canada
| | - Yucong Lin
- Institute of Engineering Medicine, Beijing Institute of Technology, Beijing, China
| | - Clara-Lea Bonzel
- Department of Biomedical Informatics, Harvard Medical School, Boston, MA, United States
| | - Qingyi Zeng
- Division of Biostatistics, School of Public Health, University of Minnesota, Minneapolis, MN, United States
| | - Sinian Zhang
- School of Statistics, Renmin University of China, Bejing, China
| | | | - Griffin M Weber
- Department of Biomedical Informatics, Harvard Medical School, Boston, MA, United States
| | | | | | - Chuan Hong
- Department of Biostatistics & Bioinformatics, Duke University, Durham, NC, United States
| | - Tianrun Cai
- Department of Biomedical Informatics, Harvard Medical School, Boston, MA, United States
| | - Jun Wen
- Department of Biomedical Informatics, Harvard Medical School, Boston, MA, United States
| | | | | | - Katherine Liao
- Department of Biomedical Informatics, Harvard Medical School, Boston, MA, United States
- Division of Rheumatology, Inflammation, and Immunity, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, United States
| | - Tianxi Cai
- Department of Biomedical Informatics, Harvard Medical School, Boston, MA, United States
- Department of Biostatistics, Harvard TH Chan School of Public Health, Boston, MA, United States
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14
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Cabral BP, Braga LAM, Syed-Abdul S, Mota FB. Future of Artificial Intelligence Applications in Cancer Care: A Global Cross-Sectional Survey of Researchers. Curr Oncol 2023; 30:3432-3446. [PMID: 36975473 PMCID: PMC10047823 DOI: 10.3390/curroncol30030260] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Revised: 03/07/2023] [Accepted: 03/11/2023] [Indexed: 03/18/2023] Open
Abstract
Cancer significantly contributes to global mortality, with 9.3 million annual deaths. To alleviate this burden, the utilization of artificial intelligence (AI) applications has been proposed in various domains of oncology. However, the potential applications of AI and the barriers to its widespread adoption remain unclear. This study aimed to address this gap by conducting a cross-sectional, global, web-based survey of over 1000 AI and cancer researchers. The results indicated that most respondents believed AI would positively impact cancer grading and classification, follow-up services, and diagnostic accuracy. Despite these benefits, several limitations were identified, including difficulties incorporating AI into clinical practice and the lack of standardization in cancer health data. These limitations pose significant challenges, particularly regarding testing, validation, certification, and auditing AI algorithms and systems. The results of this study provide valuable insights for informed decision-making for stakeholders involved in AI and cancer research and development, including individual researchers and research funding agencies.
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Affiliation(s)
| | - Luiza Amara Maciel Braga
- Laboratory of Cellular Communication, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro 21040-360, Brazil
| | - Shabbir Syed-Abdul
- Graduate Institute of Biomedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan
- School of Gerontology and Long-Term Care, College of Nursing, Taipei Medical University, Taipei 110, Taiwan
| | - Fabio Batista Mota
- Laboratory of Cellular Communication, Oswaldo Cruz Institute, Oswaldo Cruz Foundation, Rio de Janeiro 21040-360, Brazil
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15
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Yin Z, Yao C, Zhang L, Qi S. Application of artificial intelligence in diagnosis and treatment of colorectal cancer: A novel Prospect. Front Med (Lausanne) 2023; 10:1128084. [PMID: 36968824 PMCID: PMC10030915 DOI: 10.3389/fmed.2023.1128084] [Citation(s) in RCA: 28] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Accepted: 02/13/2023] [Indexed: 03/29/2023] Open
Abstract
In the past few decades, according to the rapid development of information technology, artificial intelligence (AI) has also made significant progress in the medical field. Colorectal cancer (CRC) is the third most diagnosed cancer worldwide, and its incidence and mortality rates are increasing yearly, especially in developing countries. This article reviews the latest progress in AI in diagnosing and treating CRC based on a systematic collection of previous literature. Most CRCs transform from polyp mutations. The computer-aided detection systems can significantly improve the polyp and adenoma detection rate by early colonoscopy screening, thereby lowering the possibility of mutating into CRC. Machine learning and bioinformatics analysis can help screen and identify more CRC biomarkers to provide the basis for non-invasive screening. The Convolutional neural networks can assist in reading histopathologic tissue images, reducing the experience difference among doctors. Various studies have shown that AI-based high-level auxiliary diagnostic systems can significantly improve the readability of medical images and help clinicians make more accurate diagnostic and therapeutic decisions. Moreover, Robotic surgery systems such as da Vinci have been more and more commonly used to treat CRC patients, according to their precise operating performance. The application of AI in neoadjuvant chemoradiotherapy has further improved the treatment and efficacy evaluation of CRC. In addition, AI represented by deep learning in gene sequencing research offers a new treatment option. All of these things have seen that AI has a promising prospect in the era of precision medicine.
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Affiliation(s)
- Zugang Yin
- Department of General Surgery, The First Affiliated Hospital of Dalian Medical University, Dalian, China
| | - Chenhui Yao
- Department of General Surgery, The First Affiliated Hospital of Dalian Medical University, Dalian, China
| | - Limin Zhang
- Department of Respiratory, The First Affiliated Hospital of Dalian Medical University, Dalian, China
| | - Shaohua Qi
- Institute of Laboratory Animal Science, Chinese Academy of Medical Sciences and Comparative Medicine Center, Peking Union Medical College, Beijing, China
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Mansur A, Saleem Z, Elhakim T, Daye D. Role of artificial intelligence in risk prediction, prognostication, and therapy response assessment in colorectal cancer: current state and future directions. Front Oncol 2023; 13:1065402. [PMID: 36761957 PMCID: PMC9905815 DOI: 10.3389/fonc.2023.1065402] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2022] [Accepted: 01/09/2023] [Indexed: 01/26/2023] Open
Abstract
Artificial Intelligence (AI) is a branch of computer science that utilizes optimization, probabilistic and statistical approaches to analyze and make predictions based on a vast amount of data. In recent years, AI has revolutionized the field of oncology and spearheaded novel approaches in the management of various cancers, including colorectal cancer (CRC). Notably, the applications of AI to diagnose, prognosticate, and predict response to therapy in CRC, is gaining traction and proving to be promising. There have also been several advancements in AI technologies to help predict metastases in CRC and in Computer-Aided Detection (CAD) Systems to improve miss rates for colorectal neoplasia. This article provides a comprehensive review of the role of AI in predicting risk, prognosis, and response to therapies among patients with CRC.
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Affiliation(s)
- Arian Mansur
- Harvard Medical School, Boston, MA, United States
| | | | - Tarig Elhakim
- Department of Radiology, Massachusetts General Hospital, Boston, MA, United States
| | - Dania Daye
- Department of Radiology, Massachusetts General Hospital, Boston, MA, United States
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17
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Nakanishi R, Morooka K, Omori K, Toyota S, Tanaka Y, Hasuda H, Koga N, Nonaka K, Hu Q, Nakaji Y, Nakanoko T, Ando K, Ota M, Kimura Y, Oki E, Oda Y, Yoshizumi T. Artificial Intelligence-Based Prediction of Recurrence after Curative Resection for Colorectal Cancer from Digital Pathological Images. Ann Surg Oncol 2022; 30:3506-3514. [PMID: 36512260 DOI: 10.1245/s10434-022-12926-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Accepted: 10/19/2022] [Indexed: 12/15/2022]
Abstract
BACKGROUND To develop an artificial intelligence-based model to predict recurrence after curative resection for stage I-III colorectal cancer from digitized pathological slides. PATIENTS AND METHODS In this retrospective study, 471 consecutive patients who underwent curative resection for stage I-III colorectal cancer at our institution from 2004 to 2015 were enrolled, and 512 randomly selected tiles from digitally scanned images of hematoxylin and eosin-stained tumor tissue sections were used to train a convolutional neural network. Five-fold cross-validation was used to validate the model. The association between recurrence and the model's output scores were analyzed in the test cohorts. RESULTS The area under the receiver operating characteristic curve of the cross-validation was 0.7245 [95% confidence interval (CI) 0.6707-0.7783; P < 0.0001]. The score successfully classified patients into those with better and worse recurrence free survival (P < 0.0001). Multivariate analysis revealed that a high score was significantly associated with worse recurrence free survival [odds ratio (OR) 1.857; 95% CI 1.248-2.805; P = 0.0021], which was independent from other predictive factors: male sex (P = 0.0238), rectal cancer (P = 0.0396), preoperative abnormal carcinoembryonic antigen (CEA) level (P = 0.0216), pathological T3/T4 stage (P = 0.0162), and pathological positive lymph node metastasis (P < 0.0001). CONCLUSIONS The artificial intelligence-based prediction model discriminated patients with a high risk of recurrence. This approach could help decision-makers consider the benefits of adjuvant chemotherapy.
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18
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Ding Q, Sun Y, Zhang J, Yao Y, Huang D, Jiang Y. Utility and specificity of plasma heat shock protein 90 alpha, CEA, and CA199 as the diagnostic test in colorectal cancer liver metastasis. J Gastrointest Oncol 2022; 13:2497-2504. [PMID: 36388698 PMCID: PMC9660089 DOI: 10.21037/jgo-22-797] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Accepted: 09/22/2022] [Indexed: 07/28/2023] Open
Abstract
BACKGROUND Plasma heat shock protein 90 alpha (Hsp90α) has been suggested as a novel biomarker for the diagnosis and prognosis of cancer. Carcinoembryonic antigen (CEA) and carbohydrate antigen199 (CA199) are traditional tumor biomarkers for colorectal cancer (CRC). Previous studies have shown that Hsp90α and the combination of Hsp90α and CEA are optimal biomarkers for CRC at an early stage. However, research on the use of Hsp90α alone or in combination with CEA and/or CA199 in diagnosing CRC development, particularly liver metastasis, is limited. This study sought to investigate the value of Hsp90α alone or in combination with CEA/CA199 in diagnosing CRC liver metastasis. METHODS The clinical data of 472 CRC patients were retrospectively analyzed, which were confirmed by clinical manifestations and a histopathological examination associated with an imaging diagnosis. The levels of Hsp90α, and CEA, and CA199 were assessed by enzyme-linked immunoassays and electrochemiluminescence immunoassays. Liver metastasis was diagnosed by imaging or pathology of the liver. Logistic regression models were used to analyze associations between Hsp90α, CEA, and CA199, and liver metastasis in CRC. The areas under the curves (AUCs) were used to compare the utility of Hsp90α, CEA, and CA199 in the diagnosis of CRC liver metastasis (CRLM). Additionally, we compared the diagnostic utility of the models, including the Hsp90α plus 1 of the other serum markers, and a combination of the 3 serum makers. RESULTS The plasma levels of Hsp90α, CEA, and CA199 were positively associated with a higher risk of CRLM [odds ratios (OR) ranging from 1.36-2.72]. The AUCs of CEA, CA199, and Hsp90α for CRLM were 0.80, 0.69, and 0.55, respectively. The AUCs for the combination of Hsp90α and CEA, combination of Hsp90α and CA199, combinations of Hsp90α, CEA, and CA199 were 0.75, 0.66, 0.76, respectively. The combination of Hsp90α, CEA, and CA199 did not improve the diagnostic utility for liver metastasis in CRC. CONCLUSIONS The level of Hsp90α was elevated in CRC and was associated with CRLM. Thus, the Hsp90α is a potential biomarker for CRLM. CEA has the largest diagnostic utility for CRLM. Adding Hsp90α to CEA/CA199 did not improve their diagnostic utility for CRLM.
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Affiliation(s)
- Qi Ding
- Department of Medical Oncology, The First Affiliated Hospital of University of Science and Technology of China (USTC), Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China
| | - Yubei Sun
- Department of Medical Oncology, The First Affiliated Hospital of University of Science and Technology of China (USTC), Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China
| | - Jinguo Zhang
- Department of Medical Oncology, The First Affiliated Hospital of University of Science and Technology of China (USTC), Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China
| | - Yiwei Yao
- Department of Medical Oncology, The First Affiliated Hospital of University of Science and Technology of China (USTC), Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China
| | - Dabing Huang
- Department of Medical Oncology, The First Affiliated Hospital of University of Science and Technology of China (USTC), Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China
| | - Yan Jiang
- Department of Gynecology Oncology, Anhui Provincial Cancer Hospital, West Branch of the First Affiliated Hospital of University of Science and Technology of China (USTC), Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, China
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