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Zeisler ZR, Love M, Rutishauser U, Stoll FM, Rudebeck PH. Consistent Hierarchies of Single-Neuron Timescales in Mice, Macaques, and Humans. J Neurosci 2025; 45:e2155242025. [PMID: 40180571 PMCID: PMC12060611 DOI: 10.1523/jneurosci.2155-24.2025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2024] [Revised: 03/12/2025] [Accepted: 03/21/2025] [Indexed: 04/05/2025] Open
Abstract
The intrinsic timescales of single neurons are thought to be hierarchically organized across the cortex, but whether hierarchical variation in timescales is a general brain organizing principle across mammalian species remains unclear. Here, we took a cross-species approach and estimated neuronal timescales of thousands of single neurons recorded across frontal cortex, amygdala, and hippocampus in mice, monkeys, and humans of both sexes using a task-agnostic method. We identify largely consistent hierarchies of timescales in frontal and limbic regions across species: hippocampus had the shortest timescale whereas anterior cingulate cortex had the longest. Within this scheme, variability across species was found, most notably in amygdala and orbitofrontal cortex. We show that variation in timescales is not simply related to differences in spiking statistics nor the result of cytoarchitectonic features such as cortical granularity. Thus, hierarchically organized timescales are a consistent organizing principle across species and appear to be related to a combination of intrinsic and extrinsic factors.
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Affiliation(s)
- Zachary R Zeisler
- Nash Family Department of Neuroscience, Lipschultz Center for Cognitive Neuroscience, and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, New York 10029
| | - Marques Love
- Nash Family Department of Neuroscience, Lipschultz Center for Cognitive Neuroscience, and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, New York 10029
| | - Ueli Rutishauser
- Department of Neurosurgery, Cedars-Sinai Medical Center, Los Angeles, California 90048
- Department of Neurology, Cedars-Sinai Medical Center, Los Angeles, California 90048
- Center for Neural Science and Medicine, Department of Biological Sciences, Cedars-Sinai Medical Center, Los Angeles, California 90048
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California 91125
| | - Frederic M Stoll
- Nash Family Department of Neuroscience, Lipschultz Center for Cognitive Neuroscience, and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, New York 10029
| | - Peter H Rudebeck
- Nash Family Department of Neuroscience, Lipschultz Center for Cognitive Neuroscience, and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, New York 10029
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2
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Cusinato R, Seiler A, Schindler K, Tzovara A. Sleep Modulates Neural Timescales and Spatiotemporal Integration in the Human Cortex. J Neurosci 2025; 45:e1845242025. [PMID: 39965931 PMCID: PMC11984084 DOI: 10.1523/jneurosci.1845-24.2025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2024] [Revised: 12/19/2024] [Accepted: 01/25/2025] [Indexed: 02/20/2025] Open
Abstract
Spontaneous neural dynamics manifest across multiple temporal and spatial scales, which are thought to be intrinsic to brain areas and exhibit hierarchical organization across the cortex. In wake, a hierarchy of timescales is thought to naturally emerge from microstructural properties, gene expression, and recurrent connections. A fundamental question is timescales' organization and changes in sleep, where physiological needs are different. Here, we describe two measures of neural timescales, obtained from broadband activity and gamma power, which display complementary properties. We leveraged intracranial electroencephalography in 106 human epilepsy patients (48 females) to characterize timescale changes from wake to sleep across the cortical hierarchy. We show that both broadband and gamma timescales are globally longer in sleep than in wake. While broadband timescales increase along the sensorimotor-association axis, gamma ones decrease. During sleep, slow waves can explain the increase of broadband and gamma timescales, but only broadband ones show a positive association with slow-wave density across the cortex. Finally, we characterize spatial correlations and their relationship with timescales as a proxy for spatiotemporal integration, finding high integration at long distances in wake for broadband and at short distances in sleep for gamma timescales. Our results suggest that mesoscopic neural populations possess different timescales that are shaped by anatomy and are modulated by the sleep/wake cycle.
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Affiliation(s)
- Riccardo Cusinato
- Institute of Computer Science, University of Bern, Bern 3012, Switzerland
- Center for Experimental Neurology - Sleep Wake Epilepsy Center - NeuroTec, Department of Neurology, Inselspital Bern, University Hospital, University of Bern, Bern 3010, Switzerland
| | - Andrea Seiler
- Sleep-Wake-Epilepsy Center, Department of Neurology, Inselspital Bern, University Hospital, University of Bern, Bern 3010, Switzerland
| | - Kaspar Schindler
- Sleep-Wake-Epilepsy Center, Department of Neurology, Inselspital Bern, University Hospital, University of Bern, Bern 3010, Switzerland
| | - Athina Tzovara
- Institute of Computer Science, University of Bern, Bern 3012, Switzerland
- Center for Experimental Neurology - Sleep Wake Epilepsy Center - NeuroTec, Department of Neurology, Inselspital Bern, University Hospital, University of Bern, Bern 3010, Switzerland
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3
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Affan RO, Bright IM, Pemberton LN, Cruzado NA, Scott BB, Howard MW. Ramping dynamics in the frontal cortex unfold over multiple timescales during motor planning. J Neurophysiol 2025; 133:625-637. [PMID: 39819250 DOI: 10.1152/jn.00234.2024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2024] [Revised: 08/05/2024] [Accepted: 01/08/2025] [Indexed: 01/19/2025] Open
Abstract
Plans are formulated and refined throughout the period leading up to their execution, ensuring that the appropriate behaviors are enacted at the appropriate times. Although existing evidence suggests that memory circuits convey the passage of time through diverse neuronal responses, it remains unclear whether the neural circuits involved in planning exhibit analogous temporal dynamics. Using publicly available data, we analyzed how activity in the mouse frontal motor cortex evolves during motor planning. Individual neurons exhibited diverse ramping activity throughout a delay interval that preceded a planned movement. The collective activity of these neurons was useful for making temporal predictions that became increasingly precise as the movement time approached. This temporal diversity gave rise to a spectrum of encoding patterns, ranging from stable to dynamic representations of the upcoming movement. Our results indicate that ramping activity unfolds over multiple timescales during motor planning, suggesting a shared mechanism in the brain for processing temporal information related to both memories from the past and plans for the future. NEW & NOTEWORTHY Neuronal responses in the cortex are diverse, but the nature and functional consequences of this diversity remain ambiguous. We identified a specific pattern of temporal heterogeneity in the mouse frontal motor cortex, whereby the firing of different neurons ramps up at varying speeds before the execution of a movement. Our decoding analyses reveal that this heterogeneity in ramping dynamics enables precise and reliable encoding of movement plans and time across various timescales.
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Affiliation(s)
- Rifqi O Affan
- Graduate Program in Neuroscience, Boston University, Boston, Massachusetts, United States
| | - Ian M Bright
- Department of Psychological and Brain Sciences, Boston University, Boston, Massachusetts, United States
| | - Luke N Pemberton
- Department of Psychological and Brain Sciences, Boston University, Boston, Massachusetts, United States
| | - Nathanael A Cruzado
- Department of Psychological and Brain Sciences, Boston University, Boston, Massachusetts, United States
| | - Benjamin B Scott
- Department of Psychological and Brain Sciences, Boston University, Boston, Massachusetts, United States
| | - Marc W Howard
- Department of Psychological and Brain Sciences, Boston University, Boston, Massachusetts, United States
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Song M, Shin EJ, Seo H, Soltani A, Steinmetz NA, Lee D, Jung MW, Paik SB. Hierarchical gradients of multiple timescales in the mammalian forebrain. Proc Natl Acad Sci U S A 2024; 121:e2415695121. [PMID: 39671181 DOI: 10.1073/pnas.2415695121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2024] [Accepted: 11/14/2024] [Indexed: 12/14/2024] Open
Abstract
Many anatomical and physiological features of cortical circuits, ranging from the biophysical properties of synapses to the connectivity patterns among different neuron types, exhibit consistent variation along the hierarchical axis from sensory to association areas. Notably, the temporal correlation of neural activity at rest, known as the intrinsic timescale, increases systematically along this hierarchy in both primates and rodents, analogous to the increasing scale and complexity of spatial receptive fields. However, how the timescales for task-related activity vary across brain regions and whether their hierarchical organization appears consistently across different mammalian species remain unexplored. Here, we show that both the intrinsic timescale and those of task-related activity follow a similar hierarchical gradient in the cortices of monkeys, rats, and mice. We also found that these timescales covary similarly in both the cortex and basal ganglia, whereas the timescales of thalamic activity are shorter than cortical timescales and do not conform to the hierarchical order predicted by their cortical projections. These results suggest that the hierarchical gradient of cortical timescales might represent a universal feature of intracortical circuits in the mammalian brain.
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Affiliation(s)
- Min Song
- Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology, Daejeon 34141, Republic of Korea
| | - Eun Ju Shin
- Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 34141, Republic of Korea
- Center for Synaptic Brain Dysfunctions, Institute for Basic Science, Daejeon 34141, Republic of Korea
| | - Hyojung Seo
- Department of Psychiatry, Yale University, New Haven, CT 06520
| | - Alireza Soltani
- Department of Psychological and Brain Sciences, Dartmouth College, Hanover, NH 03755
| | - Nicholas A Steinmetz
- Department of Neurobiology and Biophysics, University of Washington, Seattle, WA 98195
| | - Daeyeol Lee
- Zanvyl Krieger Mind/Brain Institute, Johns Hopkins University, Baltimore, MD 21218
- Kavli Discovery Neuroscience Institute, Johns Hopkins University, Baltimore, MD 21218
- Department of Psychological and Brain Sciences, Johns Hopkins University, Baltimore, MD 21218
- Department of Neuroscience, Johns Hopkins University, Baltimore, MD 21218
| | - Min Whan Jung
- Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 34141, Republic of Korea
- Center for Synaptic Brain Dysfunctions, Institute for Basic Science, Daejeon 34141, Republic of Korea
| | - Se-Bum Paik
- Department of Brain and Cognitive Sciences, Korea Advanced Institute of Science and Technology, Daejeon 34141, Republic of Korea
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Zeisler ZR, Love M, Rutishauser U, Stoll FM, Rudebeck PH. Consistent hierarchies of single-neuron timescales in mice, macaques and humans. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.10.30.621133. [PMID: 39553955 PMCID: PMC11565977 DOI: 10.1101/2024.10.30.621133] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/19/2024]
Abstract
The intrinsic timescales of single neurons are thought to be hierarchically organized across the cortex. This conclusion, however, is primarily based on analyses of neural responses from macaques. Whether hierarchical variation in timescales is a general brain organizing principle across mammals remains unclear. Here we took a cross-species approach and estimated neuronal timescales of thousands of single neurons recorded across multiple areas in mice, monkeys, and humans using a task-agnostic method. We identify largely consistent hierarchies of timescales in frontal and limbic regions across species: hippocampus had the shortest timescale whereas anterior cingulate cortex had the longest. Within this scheme, variability across species was found, most notably in amygdala and orbitofrontal cortex. We show that variation in timescales is not simply related to differences in spiking statistics nor the result of cytoarchitectonic features such as cortical granularity. Thus, hierarchically organized timescales are a consistent organizing principle across species and appear to be related to a combination of intrinsic and extrinsic factors.
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Affiliation(s)
- Zachary R. Zeisler
- Nash Family Department of Neuroscience, Lipschultz Center for Cognitive Neuroscience, and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, New York, NY 10029
| | - Marques Love
- Nash Family Department of Neuroscience, Lipschultz Center for Cognitive Neuroscience, and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, New York, NY 10029
| | - Ueli Rutishauser
- Department of Neurosurgery, Cedars-Sinai Medical Center, Los Angeles, CA 90048
- Department of Neurology, Cedars-Sinai Medical Center, Los Angeles, CA 90048
- Center for Neural Science and Medicine, Department of Biological Sciences, Cedars-Sinai Medical Center, Los Angeles, CA 90048
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125
| | - Frederic M. Stoll
- Nash Family Department of Neuroscience, Lipschultz Center for Cognitive Neuroscience, and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, New York, NY 10029
| | - Peter H. Rudebeck
- Nash Family Department of Neuroscience, Lipschultz Center for Cognitive Neuroscience, and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, New York, NY 10029
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Azaele S, Maritan A. Generalized Dynamical Mean Field Theory for Non-Gaussian Interactions. PHYSICAL REVIEW LETTERS 2024; 133:127401. [PMID: 39373406 DOI: 10.1103/physrevlett.133.127401] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Revised: 07/06/2024] [Accepted: 08/06/2024] [Indexed: 10/08/2024]
Abstract
We present a generalized dynamical mean field theory for studying the effects of non-Gaussian quenched noise in a general set of dynamical systems. We apply the framework to the generalized Lotka-Volterra equations, a central model in theoretical ecology, where species interactions are fixed over time and heterogeneous. Our results show that the new mean field equations have solutions that depend on all cumulants of the distribution of species interactions. We obtain an analytic solution when the interaction couplings are α-stable distributed and find a relationship between the abundance distribution of species and the statistics of microscopic interactions. In the case of sparse interactions, which we investigate analytically, we establish a simple relationship between the distribution of interactions and the one of population densities.
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Affiliation(s)
- Sandro Azaele
- Department of Physics and Astronomy "G. Galilei," Laboratory of Interdisciplinary Physics, University of Padova, Padova, Italy; INFN, Sezione di Padova, via Marzolo 8, 35131 Padova, Italy; and National Biodiversity Future Center, Piazza Marina 61, 90133 Palermo, Italy
| | - Amos Maritan
- Department of Physics and Astronomy "G. Galilei," Laboratory of Interdisciplinary Physics, University of Padova, Padova, Italy; INFN, Sezione di Padova, via Marzolo 8, 35131 Padova, Italy; and National Biodiversity Future Center, Piazza Marina 61, 90133 Palermo, Italy
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Cao R, Bright IM, Howard MW. Ramping cells in the rodent medial prefrontal cortex encode time to past and future events via real Laplace transform. Proc Natl Acad Sci U S A 2024; 121:e2404169121. [PMID: 39254998 PMCID: PMC11420195 DOI: 10.1073/pnas.2404169121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Accepted: 08/05/2024] [Indexed: 09/11/2024] Open
Abstract
In interval reproduction tasks, animals must remember the event starting the interval and anticipate the time of the planned response to terminate the interval. The interval reproduction task thus allows for studying both memory for the past and anticipation of the future. We analyzed previously published recordings from the rodent medial prefrontal cortex [J. Henke et al., eLife10, e71612 (2021)] during an interval reproduction task and identified two cell groups by modeling their temporal receptive fields using hierarchical Bayesian models. The firing in the "past cells" group peaked at the start of the interval and relaxed exponentially back to baseline. The firing in the "future cells" group increased exponentially and peaked right before the planned action at the end of the interval. Contrary to the previous assumption that timing information in the brain has one or two time scales for a given interval, we found strong evidence for a continuous distribution of the exponential rate constants for both past and future cell populations. The real Laplace transformation of time predicts exponential firing with a continuous distribution of rate constants across the population. Therefore, the firing pattern of the past cells can be identified with the Laplace transform of time since the past event while the firing pattern of the future cells can be identified with the Laplace transform of time until the planned future event.
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Affiliation(s)
- Rui Cao
- Department of Psychological and Brain Sciences, Boston University, Boston, MA02215
| | - Ian M. Bright
- Department of Psychological and Brain Sciences, Boston University, Boston, MA02215
| | - Marc W. Howard
- Department of Psychological and Brain Sciences, Boston University, Boston, MA02215
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8
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Chen X, Bialek W. Searching for long timescales without fine tuning. Phys Rev E 2024; 110:034407. [PMID: 39425360 DOI: 10.1103/physreve.110.034407] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2020] [Accepted: 09/03/2024] [Indexed: 10/21/2024]
Abstract
Animal behavior occurs on timescales much longer than the response times of individual neurons. In many cases, it is plausible that these long timescales emerge from the recurrent dynamics of electrical activity in networks of neurons. In linear models, timescales are set by the eigenvalues of a dynamical matrix whose elements measure the strengths of synaptic connections between neurons. It is not clear to what extent these matrix elements need to be tuned to generate long timescales; in some cases, one needs not just a single long timescale but a whole range. Starting from the simplest case of random symmetric connections, we combine maximum entropy and random matrix theory methods to construct ensembles of networks, exploring the constraints required for long timescales to become generic. We argue that a single long timescale can emerge generically from realistic constraints, but a full spectrum of slow modes requires more tuning. Langevin dynamics that generates patterns of synaptic connections drawn from these ensembles involves a combination of Hebbian learning and activity-dependent synaptic scaling.
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Affiliation(s)
- Xiaowen Chen
- Joseph Henry Laboratories of Physics, and Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544, USA
- Laboratoire de Physique de l'Ecole Normale Supérieure, ENS, PSL Université, CNRS, Sorbonne Université, Université Paris Cité, F-75005 Paris, France
| | - William Bialek
- Joseph Henry Laboratories of Physics, and Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544, USA
- Initiative for the Theoretical Sciences, The Graduate Center, City University of New York, 365 Fifth Avenue, New York, New York 10016, USA
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9
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Affan RO, Bright IM, Pemberton LN, Cruzado NA, Scott BB, Howard MW. Ramping Dynamics in the Frontal Cortex Unfold Over Multiple Timescales During Motor Planning. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.02.05.578819. [PMID: 38370792 PMCID: PMC10871223 DOI: 10.1101/2024.02.05.578819] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/20/2024]
Abstract
Plans are formulated and refined over the period leading to their execution, ensuring that the appropriate behavior is enacted at just the right time. While existing evidence suggests that memory circuits convey the passage of time through diverse neuronal responses, it remains unclear whether the neural circuits involved in planning behavior exhibit analogous temporal dynamics. Using publicly available data, we analyzed how activity in the frontal motor cortex evolves during motor planning. Individual neurons exhibited diverse ramping activity throughout a delay interval that preceded a planned movement. The collective activity of these neurons was useful for making temporal predictions that became increasingly precise as the movement time approached. This temporal diversity gave rise to a spectrum of encoding patterns, ranging from stable to dynamic representations of the upcoming movement. Our results indicate that neural activity unfolds over multiple timescales during motor planning, suggesting a shared mechanism in the brain for processing temporal information related to both past memories and future plans.
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Affiliation(s)
- R O Affan
- Graduate Program in Neuroscience, Boston University, Boston, MA
| | - I M Bright
- Department of Psychological and Brain Sciences, Boston University, Boston, MA 02215
| | - L N Pemberton
- Department of Psychological and Brain Sciences, Boston University, Boston, MA 02215
| | - N A Cruzado
- Graduate Program in Neuroscience, Boston University, Boston, MA
| | - B B Scott
- Department of Psychological and Brain Sciences, Boston University, Boston, MA 02215
| | - M W Howard
- Department of Psychological and Brain Sciences, Boston University, Boston, MA 02215
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