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Herman RW, Clucas G, Younger J, Bates J, Robinson B, Reddy S, Stepanuk J, O'Brien K, Veeramah K, Lynch HJ. Whole genome sequencing reveals stepping-stone dispersal buffered against founder effects in a range expanding seabird. Mol Ecol 2024; 33:e17282. [PMID: 38299701 DOI: 10.1111/mec.17282] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Revised: 12/20/2023] [Accepted: 01/04/2024] [Indexed: 02/02/2024]
Abstract
Many species are shifting their ranges in response to climate-driven environmental changes, particularly in high-latitude regions. However, the patterns of dispersal and colonization during range shifting events are not always clear. Understanding how populations are connected through space and time can reveal how species navigate a changing environment. Here, we present a fine-scale population genomics study of gentoo penguins (Pygoscelis papua), a presumed site-faithful colonial nesting species that has increased in population size and expanded its range south along the Western Antarctic Peninsula. Using whole genome sequencing, we analysed 129 gentoo penguin individuals across 12 colonies located at or near the southern range edge. Through a detailed examination of fine-scale population structure, admixture, and population divergence, we inferred that gentoo penguins historically dispersed rapidly in a stepping-stone pattern from the South Shetland Islands leading to the colonization of Anvers Island, and then the adjacent mainland Western Antarctica Peninsula. Recent southward expansion along the Western Antarctic Peninsula also followed a stepping-stone dispersal pattern coupled with limited post-divergence gene flow from colonies on Anvers Island. Genetic diversity appeared to be maintained across colonies during the historical dispersal process, and range-edge populations are still growing. This suggests large numbers of migrants may provide a buffer against founder effects at the beginning of colonization events to maintain genetic diversity similar to that of the source populations before migration ceases post-divergence. These results coupled with a continued increase in effective population size since approximately 500-800 years ago distinguish gentoo penguins as a robust species that is highly adaptable and resilient to changing climate.
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Affiliation(s)
- Rachael W Herman
- Department of Ecology and Evolution, Stony Brook University, Stony Brook, New York, USA
| | - Gemma Clucas
- Cornell Lab of Ornithology, Cornell University, Ithaca, New York, USA
| | - Jane Younger
- Institute for Marine and Antarctic Studies, University of Tasmania, Hobart, Tasmania, Australia
| | - John Bates
- Negaunee Integrative Research Center, The Field Museum of Natural History, Chicago, Illinois, USA
| | - Bryce Robinson
- Cornell Lab of Ornithology, Cornell University, Ithaca, New York, USA
| | - Sushma Reddy
- Bell Museum of Natural History and Department of Fisheries, Wildlife and Conservation Biology, University of Minnesota, St. Paul, Minnesota, USA
| | - Julia Stepanuk
- Department of Ecology and Evolution, Stony Brook University, Stony Brook, New York, USA
| | - Katie O'Brien
- Milner Centre for Evolution, University of Bath, Bath, UK
| | - Krishna Veeramah
- Department of Ecology and Evolution, Stony Brook University, Stony Brook, New York, USA
| | - Heather J Lynch
- Department of Ecology and Evolution, Stony Brook University, Stony Brook, New York, USA
- Institute for Advanced Computational Sciences, Stony Brook University, Stony Brook, New York, USA
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Brisson‐Curadeau É, Elliott K, Bost C. Contrasting bottom-up effects of warming ocean on two king penguin populations. Glob Chang Biol 2023; 29:998-1008. [PMID: 36350299 PMCID: PMC10099393 DOI: 10.1111/gcb.16519] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Revised: 10/31/2022] [Accepted: 11/06/2022] [Indexed: 06/16/2023]
Abstract
Breeding success is often correlated with climate, but the underlying bottom-up mechanisms remain elusive-particularly in marine environments. Consequently, conservation plans of many species often consider climate change as a unilateral threat, ignoring that even nearby populations can show contradicting trends with climate. Better understanding the relationship between climate and environment at different scales can help us interpret local differences in population trends, ultimately providing better tools to evaluate the global response of a species to threats such as global warming. We studied a growing king penguin population nesting at Kerguelen island (Southern Indian Ocean), hosting one of the largest colonies in the world. We used a unique dataset of foraging, breeding success, and climate data spanning over 25 years to examine the links between climate, marine environment, and breeding success at this colony. The results were then compared to the neighboring population of Crozet, which experienced the steepest decline for this species over the past few decades. At Crozet, penguins experienced lower breeding success in warmer years due to productive currents shifting away from the colony, affecting foraging behavior during chick rearing. At Kerguelen, while chick mass and survival experienced extreme variation from year to year, the annual variation was not associated with the position of the currents, which varied very little compared to the situation in Crozet. Rather than being affected by prey distribution shifts, we found evidence that chick provisioning in Kerguelen might be influenced by prey abundance, which seem to rather increase in warmer conditions. Furthermore, warmer air temperature in winter increased chick survival rate, likely due to reduced thermoregulation cost. Investigating the mechanisms between climate and fitness allowed us to predict two different fates for these populations regarding ongoing global warming.
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Affiliation(s)
- Émile Brisson‐Curadeau
- Natural Resource SciencesMcGill UniversityQuebecSainte‐Anne‐de‐BellevueCanada
- UMR 7372‐CNRSCentre d'Études Biologiques de Chizé, La Rochelle UniversityVilliers‐en‐BoisFrance
| | - Kyle Elliott
- Natural Resource SciencesMcGill UniversityQuebecSainte‐Anne‐de‐BellevueCanada
| | - Charles‐André Bost
- UMR 7372‐CNRSCentre d'Études Biologiques de Chizé, La Rochelle UniversityVilliers‐en‐BoisFrance
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Lee JR, Waterman MJ, Shaw JD, Bergstrom DM, Lynch HJ, Wall DH, Robinson SA. Islands in the ice: Potential impacts of habitat transformation on Antarctic biodiversity. Glob Chang Biol 2022; 28:5865-5880. [PMID: 35795907 PMCID: PMC9542894 DOI: 10.1111/gcb.16331] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Accepted: 06/15/2022] [Indexed: 05/04/2023]
Abstract
Antarctic biodiversity faces an unknown future with a changing climate. Most terrestrial biota is restricted to limited patches of ice-free land in a sea of ice, where they are adapted to the continent's extreme cold and wind and exploit microhabitats of suitable conditions. As temperatures rise, ice-free areas are predicted to expand, more rapidly in some areas than others. There is high uncertainty as to how species' distributions, physiology, abundance, and survivorship will be affected as their habitats transform. Here we use current knowledge to propose hypotheses that ice-free area expansion (i) will increase habitat availability, though the quality of habitat will vary; (ii) will increase structural connectivity, although not necessarily increase opportunities for species establishment; (iii) combined with milder climates will increase likelihood of non-native species establishment, but may also lengthen activity windows for all species; and (iv) will benefit some species and not others, possibly resulting in increased homogeneity of biodiversity. We anticipate considerable spatial, temporal, and taxonomic variation in species responses, and a heightened need for interdisciplinary research to understand the factors associated with ecosystem resilience under future scenarios. Such research will help identify at-risk species or vulnerable localities and is crucial for informing environmental management and policymaking into the future.
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Affiliation(s)
- Jasmine R. Lee
- British Antarctic SurveyNERCCambridgeUK
- Securing Antarctica's Environmental Future, School of Biology and Environmental ScienceQueensland University of TechnologyBrisbaneQLDAustralia
| | - Melinda J. Waterman
- Securing Antarctica's Environmental Future, School of Earth, Atmospheric and Life SciencesUniversity of WollongongWollongongNew South WalesAustralia
| | - Justine D. Shaw
- Securing Antarctica's Environmental Future, School of Biology and Environmental ScienceQueensland University of TechnologyBrisbaneQLDAustralia
| | - Dana M. Bergstrom
- Australian Antarctic Division, Department of AgricultureWater and the EnvironmentKingstonTASAustralia
- Global Challenges ProgramUniversity of WollongongWollongongNew South WalesAustralia
| | - Heather J. Lynch
- Department of Ecology and EvolutionStony Brook UniversityStony BrookNew YorkUSA
| | - Diana H. Wall
- Department of Biology and School of Global Environmental SustainabilityColorado State UniversityFort CollinsColoradoUSA
| | - Sharon A. Robinson
- Securing Antarctica's Environmental Future, School of Earth, Atmospheric and Life SciencesUniversity of WollongongWollongongNew South WalesAustralia
- Global Challenges ProgramUniversity of WollongongWollongongNew South WalesAustralia
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Kristan AK, Maiti K, Mcmahon KW, Dance MA, Polito MJ. Biological and geochemical proxies in sediment cores reveal shifts in marine predator population dynamics relative to historic anthropogenic exploitation and recent climate change at South Georgia Island sub-Antarctic. Polar Biol. [DOI: 10.1007/s00300-022-03067-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
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Pütz K, Gherardi-Fuentes C, García-Borboroglu P, Godoy C, Flagg M, Pedrana J, Vianna JA, Simeone A, Lüthi B. Exceptional foraging plasticity in King Penguins (Aptenodytes patagonicus) from a recently established breeding site in Tierra del Fuego, Chile. Glob Ecol Conserv 2021. [DOI: 10.1016/j.gecco.2021.e01669] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022] Open
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Strycker N, Borowicz A, Wethington M, Forrest S, Shah V, Liu Y, Singh H, Lynch HJ. Fifty-year change in penguin abundance on Elephant Island, South Shetland Islands, Antarctica: results of the 2019–20 census. Polar Biol 2020. [DOI: 10.1007/s00300-020-02774-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Borowicz A, Forrest S, Wethington M, Strycker N, Lynch HJ. Presence of King penguins (Aptenodytes patagonicus) on Elephant Island provides further evidence of range expansion. Polar Biol 2020; 43:2117-20. [DOI: 10.1007/s00300-020-02760-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Barbraud C, Delord K, Bost CA, Chaigne A, Marteau C, Weimerskirch H. Population trends of penguins in the French Southern Territories. Polar Biol 2020; 43:835-50. [DOI: 10.1007/s00300-020-02691-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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Foley CM, Fagan WF, Lynch HJ. Correcting for within-season demographic turnover to estimate the island-wide population of King Penguins (Aptenodytes patagonicus) on South Georgia. Polar Biol 2020; 43:251-62. [DOI: 10.1007/s00300-020-02627-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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10
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Foley CM, Lynch HJ. A method to estimate pre-exploitation population size. Conserv Biol 2020; 34:256-265. [PMID: 31460682 DOI: 10.1111/cobi.13416] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2018] [Revised: 03/15/2019] [Accepted: 07/03/2019] [Indexed: 06/10/2023]
Abstract
Antarctic fur seals (Arctocephalus gazella) were commercially exploited on the subantarctic island of South Georgia for over 100 years and nearly driven to extinction. Since the cessation of harvesting, however, their populations have rebounded, and they are now often considered a nuisance species whose impact on the terrestrial landscape should be mitigated. Any evaluation of their current population requires the context provided by their historic, pre-exploitation abundance, lest ecologists fall prey to shifting baseline syndrome in which their perspective on current abundance is compared only with an altered state resulting from past anthropogenic disturbance. Estimating pre-exploitation abundance is critical to defining species recovery and setting recovery targets, both of which are needed for the International Union for the Conservation of Nature's recent efforts to develop a green list of recovering species. To address this issue, we reconstructed the South Georgia fur seal harvest from 1786 to 1908 from ship logbooks and other historical records and interpolated missing harvest data as necessary with a generalized linear model fit to the historical record. Using an approximate Bayesian computation framework, harvest data, and a stochastic age-structured population model, we estimated the pre-exploitation abundance of Antarctic fur seals on South Georgia was 2.5 million females (95% CI 1.5-3.5 million). This estimate is similar to recent abundance estimates, and suggests current populations, and the ecological consequences of so many fur seals on the island, may be similar to conditions prior to human harvest. Although the historic archive on the fur sealing era is unavoidably patchy, the use of archival records is essential for reconstructing the past and, correspondingly, to understanding the present. Article impact statement: Defining species recovery requires an understanding of baseline population state, which can be estimated through statistical methods.
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Affiliation(s)
- Catherine M Foley
- Hawai'i Institute of Marine Biology, University of Hawai'i at Mānoa, P.O. Box 1346, Kāne'ohe, HI 96744, USA
| | - Heather J Lynch
- Department of Ecology and Evolution, Stony Brook University, 650 Life Sciences Building, Stony Brook, NY, 11794, U.S.A
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Poncet S, Wolfaardt AC, Barbraud C, Reyes-Arriagada R, Black A, Powell RB, Phillips RA. The distribution, abundance, status and global importance of giant petrels (Macronectes giganteus and M. halli) breeding at South Georgia. Polar Biol 2019. [DOI: 10.1007/s00300-019-02608-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
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