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Pirani RM, Arias CF, Charles K, Chung AK, Curlis JD, Nicholson DJ, Vargas M, Cox CL, McMillan WO, Logan ML. A high-quality genome for the slender anole (Anolis apletophallus): an emerging model for field studies of tropical ecology and evolution. G3 (Bethesda) 2023; 14:jkad248. [PMID: 37875105 PMCID: PMC10755174 DOI: 10.1093/g3journal/jkad248] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2023] [Revised: 01/22/2023] [Accepted: 10/05/2023] [Indexed: 10/26/2023]
Abstract
The slender anole, Anolis apletophallus, is a small arboreal lizard of the rainforest understory of central and eastern Panama. This species has been the subject of numerous ecological and evolutionary studies over the past 60 years as a result of attributes that make it especially amenable to field and laboratory science. Slender anoles are highly abundant, short-lived (nearly 100% annual turnover), easy to manipulate in both the lab and field, and are ubiquitous in the forests surrounding the Smithsonian Tropical Research Institute in Panama, where researchers have access to high-quality laboratory facilities. Here, we present a high-quality genome for the slender anole, which is an important new resource for studying this model species. We assembled and annotated the slender anole genome by combining 3 technologies: Oxford Nanopore, 10× Genomics Linked-Reads, and Dovetail Omni-C. We compared this genome with the recently published brown anole (Anolis sagrei) and the canonical green anole (Anolis carolinensis) genomes. Our genome is the first assembled for an Anolis lizard from mainland Central or South America, the regions that host the majority of diversity in the genus. This new reference genome is one of the most complete genomes of any anole assembled to date and should facilitate deeper studies of slender anole evolution, as well as broader scale comparative genomic studies of both mainland and island species. In turn, such studies will further our understanding of the well-known adaptive radiation of Anolis lizards.
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Affiliation(s)
- Renata M Pirani
- Department of Biology, University of Nevada Reno, Reno, NV 89557, USA
- Smithsonian Tropical Research Institute, Panama City 0843-03092, Panama
| | - Carlos F Arias
- Smithsonian Tropical Research Institute, Panama City 0843-03092, Panama
- Data Science Lab, Office of the Chief Information Officer, Smithsonian Institution, Washington, DC 20013, USA
| | - Kristin Charles
- Department of Biology, University of Nevada Reno, Reno, NV 89557, USA
| | - Albert K Chung
- Smithsonian Tropical Research Institute, Panama City 0843-03092, Panama
- Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544-2016, USA
| | - John David Curlis
- Smithsonian Tropical Research Institute, Panama City 0843-03092, Panama
- Department of Ecology and Evolution, University of Michigan, Ann Arbor, MI 48109-1085, USA
| | - Daniel J Nicholson
- Smithsonian Tropical Research Institute, Panama City 0843-03092, Panama
- University of Texas, Arlington, TX 76019, USA
| | - Marta Vargas
- Smithsonian Tropical Research Institute, Panama City 0843-03092, Panama
| | - Christian L Cox
- Smithsonian Tropical Research Institute, Panama City 0843-03092, Panama
- Department of Biological Sciences and Institute of Environment, Florida International University, Miami, FL 33199, USA
| | - W Owen McMillan
- Smithsonian Tropical Research Institute, Panama City 0843-03092, Panama
| | - Michael L Logan
- Department of Biology, University of Nevada Reno, Reno, NV 89557, USA
- Smithsonian Tropical Research Institute, Panama City 0843-03092, Panama
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Telford SR. Redescription of Haemoproteus mesnili (Apicomplexa: Plasmodiidae) and its meronts, with description of a second haemosporidian parasite of African cobras. J Parasitol 2007; 93:673-9. [PMID: 17626363 DOI: 10.1645/ge-3582.1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
Haemoproteus mesnili (Bouet 1909) Wenyon 1926 is redescribed from the spitting cobra, Naja nigricollis nigricollis, of Tanzania. Mature gametocytes in the acute phase of infection averaged 17.7 X 7.3 jim, with LW 128.1 jim-, and L:W ratio 2.52. Nuclei were visible in both sexes. Both sexes were heavily pigmented, with 31-62 black granules dispersed in macrogametocytes; 20-46 granules were often clumped or concentrated near ends of microgametocytes. The halteridial form was present in 28% of active-phase gametocytes, but in only 8% of those in chronic phase. A few large, possibly first generation, meronts were present in cardiac muscle; uninucleate parasites within parasitophorous vacuoles in splenic cells produced small rounded or ovoid meronts, 12.2 x 9.6 microm, with 12-16 deeply basophilic, square-to-rectangular cytomeres. Meronts with 17-32 cytomeres were 16.9 x 11.9 microm. Meronts, 20 x 16 to 26 x 22 microm, contained 51-57 cytomeres. Mature meronts were ovoid, 13.7 x 11.5 microm, with many rounded merozoites. Haemoproteus balli n. sp, found in an Egyptian cobra, Naja haje haje of Kenya, differs from H. mesnili in average gametocyte dimensions, 10.8 x 7.7 microm; LW, 83.2 microm2; L/W ratio, 1.42; absence of halteridial forms; sparse pigmentation (3-10 granules); and presence of a broad peripheral band, apparently chromatin, along one side of microgametocytes.
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Affiliation(s)
- Sam R Telford
- The Florida Museum of Natural History, University of Florida, Gainesville, Florida 32611, USA.
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Abstract
Haemocystidium lygodactyli n. sp. parasitizes Lygodactylus capensis grotei (Gekkonidae) in Tanzania. Mature gametocytes in acute phase of infection average 16.3 x 5.7 microm (11-20 x 4-9.5 microm), with LW 93.0 (62-140 microm2) and L/W ratio 2.94 (1.2-3.9). Gametocytes usually lateral, lateropolar, or halteridial in position. There was no significant sexual dimorphism in gametocyte dimensions. Nuclei discrete in both sexes at maturity, with a rounded nucleolus usually present in microgametocytes. In chronic infection, gametocytes were 18.1 x 8.7 microm (8-25 x 5-11 microm), with LW 156.8 microm2 (80-250) and L/W 2.16 (1.1-3.6). When gametocytes from the chronic infection were compared with the same sex in acute infection, length did not differ, but differences were present between the same sex in each comparison of width, LW, and L/W. Macrogametocytes and microgametocytes in chronic phase were broader, larger, and less elongate and most commonly halteridial. Meronts were found only in endothelium and connective tissue of lung. Elongate to oval in shape, the larger meronts filled with nuclei were 12.2 x 6.9 microm (10.0 x 5.0-16.0 x 9.0), with LW 50-144 microm2 (85.1). In 1 initial infection followed for 49 days, apparently mature gametocytes appeared by day 28 postcapture. Binucleate parasites were present from day 14 throughout the course of infection, with their frequency increasing from 5% of immature parasites to 34% of mature gametocytes. Binucleate mature gametocytes were found in 1 other infection, where 14% had 2 nuclei. Sex ratio varied from 51 to 63% in favor of macrogametocytes.
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Affiliation(s)
- Sam R Telford
- The Florida Museum of Natural History, University of Florida, Gainesville, Florida 32611, USA.
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Telford SR, Wozniak EJ, Butler JF. Haemogregarine specificity in two communities of Florida snakes, with descriptions of six new species of Hepatozoon (Apicomplexa: Hepatozoidae) and a possible species of Haemogregarina (Apicomplexa: Haemogregarinidae). J Parasitol 2001; 87:890-905. [PMID: 11534655 DOI: 10.1645/0022-3395(2001)087[0890:hsitco]2.0.co;2] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
Five species of snakes in Florida, from Palm Beach County in the south and Alachua County 450 km to the north, occur in similar habitat but have distinctive Hepatozoon species characteristic of each host species. In Palm Beach County, Diadophis punctatus is host to Hepatozoon punctatus n. sp., Thamnophis sauritus sackenii to Hepatozoon sauritus n. sp., and Nerodia fasciata pictiventris to Hepatozoon pictiventris n. sp. In Alachua County, N. fasciata pictiventris is parasitized by Hepatozoon fasciatae n. sp., Seminatrix p. pygaea by Hepatozoon seminatrici n. sp., and Thamnophis s. sirtalis by Hepatozoon sirtalis n. sp. Each Hepatozoon sp. has distinctive gamonts and sporogonic characters and, in the 4 species where known, meronts. Nerodia floridana is host to Haemogregarina floridana n. sp. in both localities, with generic identification tentative, based upon presence of erythrocytic meronts. The presence of sporocysts in the proboscis of 31% of Aedes aegypti infected by H. pictiventris is the first report of infective stages of a reptilian Hepatozoon species within the mouthparts of a dipteran vector. This study suggests that in Florida, at least, the diversity of the Hepatozoon community not only equals but probably exceeds the diversity of the snake communities present, and that host specificity in nature may be much greater than that postulated from previous studies.
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Affiliation(s)
- S R Telford
- The Florida Museum of Natural History, University of Florida, Gainesville 32611, USA
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Telford SR. Additional Fallisia spp. (Apicomplexa: Plasmodiidae) of Neotropical lizards. Syst Parasitol 1998. [DOI: 10.1023/a:1006008301011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Abstract
Phanerozoites of Plasmodium sasai parasitised virtually all tissues of Takydromus tachydromoides infected by inoculation of blood, and persisted until each lizard died, 2-296 days postinoculation. At 4 days postinoculation, phanerozoites were larger than at 2 and 6 days; many were observed rupturing, suggesing a maturation time of approximately 4 days. The proliferation of phanerozoites decreased after 2 months postinoculation, but small phanerozoites were still present at 296 days. A few encysted phanerozoites (chronozoites) appeared at 2 days postinoculation, but from 75 days comprised over half of parasites present in most tissues. Some differences in mean size and shape were evident among various organs. Phanerozoites occurred in connective tissue and endothelium in all organs, but were most plentiful in the heart in every infection, often occurring in clusters of > 30 schizonts, with up to 105 found in single sections at 4 days. Phanerozoites did not parasitise reticular cells of the spleen and bone marrow, in contrast to Plasmodium mexicanum as described in unnatural host species. Little difference was seen between two strains of P. sasai in its natural host T. tachydromoides and a strain isolated from Takydromus smaragdinus.
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Affiliation(s)
- S R Telford
- Florida Museum of Natural History, University of Florida, Gainesville 32611, USA.
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Telford SR. A review of the trypanosomes from lizards of the family Iguanidae (sensu lato), including the descriptions of five new species, and an evaluation of the effect of host difference upon taxonomic characters of saurian trypanosomes. Syst Parasitol 1996. [DOI: 10.1007/bf00009388] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Telford SR. Two new species of Haemocystidium Castellani & Willey (Apicomplexa: Plasmodiidae) from Pakistani lizards, and the support their meronts provide for the validity of the genus. Syst Parasitol 1996; 34:197-214. [DOI: 10.1007/bf00009387] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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