Accumulation and distribution pattern of macro- and microelements and trace elements in Vitis vinifera L. cv. Chardonnay berries

Transcriptomic and metabolomic integration as a resource in grapevine to study fruit metabolite quality traits

Transcriptomics and metabolomics are methodologies being increasingly chosen to perform molecular studies in grapevine (Vitis vinifera L.), focusing either on plant and fruit development or on interaction with abiotic or biotic factors. Currently, the integration of these approaches has become of utmost relevance when studying key plant physiological and metabolic processes. The results from these analyses can undoubtedly be incorporated in breeding programs whereby genes associated with better fruit quality (e.g., those enhancing the accumulation of health-promoting compounds) or with stress resistance (e.g., those regulating beneficial responses to environmental transition) can be used as selection markers in crop improvement programs. Despite the vast amount of data being generated, integrative transcriptome/metabolome meta-analyses (i.e., the joint analysis of several studies) have not yet been fully accomplished in this species, mainly due to particular specificities of metabolomic studies, such as differences in data acquisition (i.e., different compounds being investigated), unappropriated and unstandardized metadata, or simply no deposition of data in public repositories. These meta-analyses require a high computational capacity for data mining a priori, but they also need appropriate tools to explore and visualize the integrated results. This perspective article explores the universe of omics studies conducted in V. vinifera, focusing on fruit-transcriptome and metabolome analyses as leading approaches to understand berry physiology, secondary metabolism, and quality. Moreover, we show how omics data can be integrated in a simple format and offered to the research community as a web resource, giving the chance to inspect potential gene-to-gene and gene-to-metabolite relationships that can later be tested in hypothesis-driven research. In the frame of the activities promoted by the COST Action CA17111 INTEGRAPE, we present the first grapevine transcriptomic and metabolomic integrated database (TransMetaDb) developed within the Vitis Visualization (VitViz) platform (https://tomsbiolab.com/vitviz). This tool also enables the user to conduct and explore meta-analyses utilizing different experiments, therefore hopefully motivating the community to generate Findable, Accessible, Interoperable and Reusable (F.A.I.R.) data to be included in the future.

Occurrence of some rare earth elements in vineyard soils under semiarid Mediterranean environment

A comprehensive investigation has been carried out into the concentrations of a range of REEs (neodymium Nd, cerium Ce, lanthanum La, yttrium Y, scandium Sc) in soils of vineyards belonging to the protected denomination of origin (PDO) Valdepeñas (Central Spain). The mean concentrations (expressed in mg kg^-1) are Ce 70.6, Nd 32.9, La 36.2, Y 21.6, and Sc 13.7 in surface horizons (Ap), while in subsurface horizons (Bt or Bw and some Ck), the values are Ce 67.6, Nd 31.8, La 34.4, Y 19.6, and Sc 13.9. The relative abundance in these soils is Ce > La > Nd > Y > Sc in both the surface and subsurface horizons. These values are close to, or slightly higher than, the regional levels but similar to national and global averages, although relatively high values have been detected at certain sampling points. Another aim was to explain the spatial variations in these elements within the territory under study. It was found that the spatial variations are due to the nature of the parent materials and the pedogenetic processes, although the sparse spatial distribution patterns with prominent anomalies are interpreted arising from anthropogenic sources (fertilization). However, these anomalies did not present any environmental risk in the studied zone.

The distribution of Rare Earth Elements discriminates the growth substrate of Vitis vinifera L

Sustainable agricultural, food-related strategies and geographic traceability require understanding of the plant physiological response to stress potentially generated by contaminated soils. Here, we have investigated the effect of contaminated substrate on growth of Vitis vinifera L. plants analysing the distribution of full Rare Earth Elements (REE) spectra in different parts of the plant. Experiments were carried out using pristine plants growing in a handmade substrate (blank experiment) and in REE artificially-enriched soil (spiked experiment). Our results show that both plant mass and REE amount in leaves are not influenced by the substrate enrichment while roots are by one-order of magnitude enriched for three-orders of magnitude enhancement of the soil substrate. This clearly indicates that soil contamination does not significantly influence the REE amount in the aerial parts. However, the spectra of REE normalized changes when the soil is enriched. We found that Light-REE (from La to Gd) are by more than one order of magnitude enriched compared to Heavy-REE (from Tb to Lu plus Y) in spiked experiment showing the specific response of Vitis vinifera L. to the stress generated by soil contamination. We propose that REE distribution spectra is a marker of Vitis vinifera L. substrate of growth and providing a new tool for tracing the geographical origin of agri-food products.

The influence of the winemaking process on the elemental composition of the Marselan red wine

BACKGROUND

The elemental profile of the Marselan wine cycle was studied with a single ion-beam technique, namely particle-induced X-ray emission (PIXE). Samples were collected from all of the major stages involved in the wine cycle, including soil, vine plant, grape, and different stages of wine processing.

RESULTS

The results show the influence of field practices on the elemental composition of leaves, branches, grapes, and soil. Mechanisms of element precipitation and elimination from the wine were identified through the changes in the elemental concentrations measured during the post-harvesting processes. The concentrations of some elements, such as Al, Si, K, and Ni, did not vary for grapes collected at different maturation stages. On the other hand, changes in the concentrations of Si, Cl, Ca, Cu, and K were observed right after the maceration and pressing processes in young wine. Finally, the reduction in the Cu concentration during the last stages of the wine cycle is related to its precipitation in the storage tanks.

CONCLUSIONS

It was found that field practices and winemaking processes played distinct roles in the elemental composition of grapes and wine from different preparation stages. Moreover, PIXE proved to be a suitable analytical tool for the analysis of the whole wine cycle because it handles solid and liquid samples in a clean and straightforward manner. © 2019 Society of Chemical Industry.

Trace elements in berries collected near upgraders and open pit mines in the Athabasca Bituminous Sands Region (ABSR): Distinguishing atmospheric dust deposition from plant uptake

There are ongoing concerns regarding environmental emissions of trace elements (TEs) from bitumen mining and upgrading in the Athabasca Bituminous Sands Region (ABSR). Depending on their physical and chemical forms, elevated concentrations of potentially toxic TEs in berries could pose a health risk to local indigenous communities because native fruits are an important part of their traditional diet. The objective of this study was to distinguish between aerial deposition of TEs versus plant uptake, in cranberries, lingonberries, and blueberries growing in the ABSR. The concentrations of TEs were determined using ICP-MS in the metal-free, ultraclean SWAMP lab at the University of Alberta. The spatial variation in abundance of conservative, lithophile elements such as Y in berries resembles the published map of dust deposition rates obtained using Sphagnum moss. The presence of dust particles on the surface of the berries near open pit mines and upgraders was confirmed using SEM. Elements which show strong, positive correlation with Y include Al, Cr, Pb, U, and V; these are supplied mainly by dust. Elements which are largely independent of Y concentrations include Ba, Cd, Cu, Mn, Mo, Ni, Rb, Sr, and Zn; these are obtained primarily by plant uptake from soil. The concentrations of elements associated with dust were considerably reduced after washing with water, but the elements independent of dust inputs were unaffected. Elements which are supplied almost exclusively by dust (e.g. Y) are more abundant in berries from the ABS region (2 to 24 times), compared to berries from remote locations.

Current Perspective on Arsenic in Wines: Analysis, Speciation, and Changes in Composition during Production

Arsenic, a naturally occurring metalloid found in certain foods, exists in various redox states and as inorganic and organic species, each with varying levels of toxicity. International regulatory bodies have imposed allowable maximums for total arsenic in wine ranging between 100 and 200 μg/L. Typical commercial wine levels are within these limits. However, a better understanding of viticultural and enological practices impacting total arsenic and arsenic species in grapes and wines is needed to ensure levels remain low. This perspective discusses current information on factors impacting the arsenic content of grapes and wines and the analytical approaches for monitoring inorganic and organic species.

Innovative isotopic method to evaluate bioaccumulation of As and MTEs in Vitis vinifera

The transfer of metal and metalloid trace elements (MTEs) from contaminated soil to grapevines is a major issue for grape consumption and for the associated health risks. Based on an isotopic approach, we shed light on the concept of MTE bioavailability. The bioavailable fractions are identified by using the Sr-isotope ratio as a proxy for MTEs. This allows us to differentiate three soil reservoirs: the 'current available fraction' in soil water, the 'reserve available fraction' stored in mineral phases of the soil fractions, and the 'non-available fraction'. The reserve available fraction, representing 10 to 60% of bulk soil depending on the MTE, includes the exchangeable, carbonates, humic substance and oxides fractions. The ⁸⁷Sr/⁸⁶Sr isotopic signatures of grape berries and vine leaves show an additional source of MTEs, which is imported by foliar uptake and can contribute up to 10% of the MTEs in leaves. In addition, root-uptake and translocation rates show high accumulation rates of Co, Sn and Cu, and low ones for As, Sb, Zn and Cd. A daily intake between 1 and 3 kg of (dry grapes) would reach the benchmark dose level for a 0.5% (BMDL_0.5). While such a daily intake of grapes is unreasonable, consumption of other local vegetables and fruit would contribute to the daily intake. Hence, a chronic arsenic exposure is of great concern for human health in mining areas. We outline the importance of geochemical tracers, such as Sr isotopes, when determining the transfer and translocation of MTEs in plants. Our method presents a high-precision evaluation of the bioavailability and bioaccumulation of MTEs, and a better understanding of these processes in plants, thus leading to a better assessment of the environmental risk on human health.

Mineral Composition through Soil-Wine System of Portuguese Vineyards and Its Potential for Wine Traceability

The control of geographic origin is one of a highest priority issue regarding traceability and wine authenticity. The current study aimed to examine whether elemental composition can be used for the discrimination of wines according to geographical origin, taking into account the effects of soil, winemaking process, and year of production. The elemental composition of soils, grapes, musts, and wines from three DO (Designations of Origin) and for two vintage years was determined by using the ICP-MS semi-quantitative method, followed by multivariate statistical analysis. The elemental composition of soils varied according to geological formations, and for some elements, the variation due to soil provenance was also observed in musts and wines. Li, Mn, Sr and rare-earth elements (REE) allowed wine discrimination according to vineyard. Results evidenced the influence of winemaking processes and of vintage year on the wine’s elemental composition. The mineral composition pattern is transferred through the soil-wine system, and differences observed for soils are reflected in grape musts and wines, but not for all elements. Results suggest that winemaking processes and vintage year should be taken into account for the use of elemental composition as a tool for wine traceability. Therefore, understanding the evolution of mineral pattern composition from soil to wine, and how it is influenced by the climatic year, is indispensable for traceability purposes.

Chemical elements as fingerprints of geographical origin in cultivars of Vitis vinifera L. raised on the same SO4 rootstock

The uptake of major and trace elements in grapevine (Vitis vinifera L.) can be influenced by soil, climate, geographic origin, and rootstock type. Rootstocks were mainly selected to resist phylloxera and for specific tolerance to lime, mineral uptake, drought, and salinity. The relationship among concentrations of major, trace, and rare earth elements was studied in soil and leaves from two Italian grapevine cultivars, "Cabernet Sauvignon" and "Corvina," employed to produce renowned controlled designation of origin (DOC) wines. The cultivars were raised on the same rootstock SO4 in two different areas of the Veneto Region (Northern Italy). The elements were studied by X-ray fluorescence and inductively coupled plasma mass spectrometry, and data were elaborated by non-parametric tests and multivariate linear discrimination analysis. The related index of bioaccumulation was calculated to define the specific assimilation of the elements from soil to leaves. A statistically significant correspondence between soil and leaf samples was observed for Mg, Sm, V, and Zr. The results allowed to discriminate soil and leaf samples of the two cultivars according to geographical provenance, possibly providing geochemical markers (fingerprints) useful against fraudulent use of DOC wine labels.

Matrix Extension and Multilaboratory Validation of Arsenic Speciation Method EAM §4.10 to Include Wine

A multilaboratory validation (MLV) was performed to extend the U.S. Food and Drug Administration's (FDA) analytical method Elemental Analysis Manual (EAM) §4.10, High Performance Liquid Chromatography-Inductively Coupled Plasma-Mass Spectrometric Determination of Four Arsenic Species in Fruit Juice, to include wine. Several method modifications were examined to optimize the method for the analysis of dimethylarsinic acid, monomethylarsonic acid, arsenate (AsV), and arsenite (AsIII) in various wine matrices with a range of ethanol concentrations by liquid chromatography-inductively coupled plasma-mass spectrometry. The optimized method was used for the analysis of five wines of different classifications (red, white, sparkling, rosé, and fortified) by three laboratories. Additionally, the samples were fortified in duplicate at levels of approximately 5, 10, and 30 μg kg^-1 and analyzed by each participating laboratory. The combined average fortification recoveries of dimethylarsinic acid, monomethylarsonic acid, and inorganic arsenic (iAs the sum of AsV and AsIII) in these samples were 101, 100, and 100%, respectively. To further demonstrate the method, 46 additional wine samples were analyzed. The total As levels of all the wines analyzed in this study were between 1.0 and 38.2 μg kg^-1. The overall average mass balance based on the sum of the species recovered from the chromatographic separation compared to the total As measured was 89% with a range of 51-135%. In the 51 analyzed samples, iAs accounted for an average of 91% of the sum of the species with a range of 37-100%.

Rare earth elements distribution in grapevine varieties grown on volcanic soils: an example from Mount Etna (Sicily, Italy)

A geochemical and statistical approach has allowed identifying in rare earth elements (REEs) absorption a good fingerprinting mark for determining the territoriality and the provenance of Vitis vinifera L. in the district of Mount Etna (southern Italy). Our aim is to define the REEs distribution in different parts of the plants which grow in the same volcanic soil and under the same climate conditions, and therefore to assess whether REEs distribution may reflect the composition of the provenance soil or if plants can selectively absorb REEs in order to recognize the fingerprint in the Etna Volcano soils as well as the REEs pattern characteristic of each cultivar of V. vinifera L. The characteristic pattern of REEs has been determined by ICP-MS analyses in the soils and in the selected grapevine varieties for all the following parts: leaves, seeds, juice, skin, and berries. These geochemical criteria, together with the multivariate statistical analysis of the principal component analysis (PCA) and of the linear discriminant analysis (LDA) that can be summarized with the box plot, suggest that leaves mostly absorb REEs than the other parts of the plant. This work investigates the various parts of the plant in order to verify if each grape variety presents a characteristic geochemical pattern in the absorption of REEs in relationship with the geochemical features of the soil so to highlight the individual compositional fingerprint. Based on REE patterns, our study is a useful tool that allows characterizing the differences among the grape varieties and lays the foundation for the use of REEs in the geographic origin of the Mount Etna wine district.

Distribution of YLOID in soil-grapevine system (Vitis vinifera L.) as tool for geographical characterization of agro-food products. A two years case study on different grafting combinations

The knowledge of a chemistry relationship between the soil and the agricultural products is an important tool for the quality assessment of food. We studied YLOID (Y, La and lanthanoids), recognized as very useful tracers due their coherent and predictable behavior, to trace and evaluate their distribution from soil to the grape in Vitis vinifera L. Because much of the world's viticulture is based on grafting, and rootstocks have proved affect vine growth, yield, fruit and wine quality, we carried out experimental trials to analyse the YLOID distribution of two different red cultivars, grafted onto six different rootstocks, on the same soil. The YLOID amounts, the relationship Heavy vs Light YLOID and the pattern of YLOID were calculated. The results showed that the different grafting combinations were not able to induce significant differences in YLOID uptake from the soil maintaining the same fingerprint (with the exception of Eu).

Geochemical characterization of elements in Vitis vinifera cv. Negroamaro grape berries grown under different soil managements

The present geochemical study concerns the impact of viticultural practices in the chemical composition of the grape cultivar "Negroamaro" in Apulia, a southern Italian region renowned for its quality wine. Three types of soil management (SM), two cover cropping with different mixtures, and a soil tillage were considered. For each SM, the vines were irrigated according to two irrigation levels. Chemical composition of soil and of berries of Vitis vinifera cultivar "Negroamaro" were analyzed by X-ray fluorescence, inductively coupled plasma-mass spectrometry and multivariate statistics (linear discrimination analysis). In detail, we investigated major and trace elements behavior in the soil according to irrigation levels, the related index of bioaccumulation (BA) and the relationship between trace element concentration and soil management in "Negroamaro" grapes. The results indicate that soil management affects the mobility of major and trace elements. A specific assimilation of these elements in grapes from vines grown under different soil management was confirmed by BA. Multivariate statistics allowed to associate the vines to the type of soil management. This geochemical characterization of elements could be useful to develop fingerprints of vines of the cultivar "Negroamaro" according to soil management and geographical origin.

Importance of soil and vineyard management in the determination of grapevine mineral composition

The spatial variability of the mineral composition of grapevines in production vineyards along the east Adriatic coast was determined and compared between conventional and sustainable vineyard management. Cluster analysis shows a high level of spatial variability even within the individual locations. Factor analysis reveals three factors with strong loading for the macronutrients K and P and the micronutrient Mn, which explain 67% of the total variance in the mineral composition. Here, 26% to 34% of the variance of these three elements can be explained by abiotic and biotic soil parameters, with soil concentrations of K, Fe and Cu, organic matter content, and vesicular colonisation showing the strongest effects on the mineral composition of the grapevines. In addition, analysis of the mineral composition data shows significant differences between differently managed vineyards, with increased bioaccumulation of P and K in sustainable vineyards, while Zn bioaccumulation was increased in conventional vineyards. Our data confirm the importance of soil and vineyard management in the concept of terroir, and demonstrate the effects of sustainable management practices on the mineral nutrition of grapevines that result from modified nutrient availability related to changes in the abiotic and biotic characteristics of the soil.

Geochemical behaviour of rare earths in Vitis vinifera grafted onto different rootstocks and growing on several soils

The geochemical behaviour of lanthanides and yttrium (Rare Earth Elements, REEs) has been investigated mainly in geological systems where these elements represent the best proxies of processes involving the occurrence of an interface between different media. This behaviour is assessed according to features recorded in sequences of REE concentrations along the REE series normalised with respect to a reference material. In this study, the geochemical behaviour of REE was investigated in different parts of Vitis vinifera specimens grown off-soil, on soils of different nature and grafted onto several rootstocks in order to evaluate effects induced by these changes. The results indicated that roots are the plant organs where REEs are preferentially concentrated, in particular elements from Sm to Ho (middle REE, MREE) whereas Eu enrichments occur in aerial parts. The geochemical behaviour of REE suggests that MREE enrichments in roots are due to preferential MREE interactions with biological membranes or to surface complexation with newly formed phosphates. Eu-positive anomalies suggest that Eu(3+) can form stable organic complexes in place of Ca(2+) in several biological processes in xylem fluids. The possibility that Eu mobility in these fluids can be enhanced by its reductive speciation as Eu(2+) cannot be ruled out. The assessment of the geochemical behaviour of REE according to the theory of the Tetrad Effect carried out confirms that REEs coming from soil are scavenged onto root tissues or mineral surfaces whereas their behaviour in aerial parts of V. vinifera is driven by dissolved complexation.

Arsenic present in the soil-vine-wine chain in vineyards situated in an old mining area in Trentino, Italy

The present study follows arsenic (As) transfer through the chain of soil-vine-leaves-grapes-wine to assess the possible risk of arsenic intake related to consuming grapes and wines produced in 10 vineyards located in a mining area rich in this element. The results are compared with date from 18 uncontaminated areas. In the soil, the content of As extracted with acqua regia and that extracted with ammonium acetate, were analyzed. Leaves and berries were analyzed after washing with acidified aqueous solution and acid mineralization in a closed vessel, whereas wines were simply diluted before analysis. All analyses were performed using an inductively coupled plasma mass-spectrometer. The aqua regia extractable As concentration in soil ranged from 3.7 to 283 mg/kg, whereas available As varied from 18 to 639 µg/kg, and As total concentration ranged from 16.3 to 579 µg/kg dry weight in leaves and from <0.1 to 36.8 µg/kg dry weight in grapes. Arsenic levels in wines were always below 1.62 µg/L, with higher concentration in red wines than in white wines. Significant and positive correlations between the As concentrations in soils, leaves, and berries are highlighted, with the samples collected near the mining area having significantly higher values. Nevertheless, As levels in wines were always well below the limit (200 µg/L) suggested by the International Organization of Vine and Wine.

Analytical characterization of wine and its precursors by capillary electrophoresis

The accurate determination of marker chemical species in grape, musts, and wines presents a unique analytical challenge with high impact on diverse areas of knowledge such as health, plant physiology, and economy. Capillary electromigration techniques have emerged as a powerful tool, allowing the separation and identification of highly polar compounds that cannot be easily separated by traditional HPLC methods, providing complementary information and permitting the simultaneous analysis of analytes with different nature in a single run. The main advantage of CE over traditional methods for wine analysis is that in most cases samples require no treatment other than filtration. The purpose of this article is to present a revision on capillary electromigration methods applied to the analysis of wine and its precursors over the last decade. The current state of the art of the topic is evaluated, with special emphasis on the natural compounds that have allowed wine to be considered as a functional food. The most representative revised compounds are phenolic compounds, amino acids, proteins, elemental species, mycotoxins, and organic acids. Finally, a discussion on future trends of the role of capillary electrophoresis in the field of analytical characterization of wines for routine analysis, wine classification, as well as multidisciplinary aspects of the so-called "from soil to glass" chain is presented.