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Shimizu K, Nishi M, Sakate Y, Kawanami H, Bito T, Arima J, Leria L, Maldonado M. Silica-associated proteins from hexactinellid sponges support an alternative evolutionary scenario for biomineralization in Porifera. Nat Commun 2024; 15:181. [PMID: 38185711 PMCID: PMC10772126 DOI: 10.1038/s41467-023-44226-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Accepted: 12/04/2023] [Indexed: 01/09/2024] Open
Abstract
Metazoans use silicon traces but rarely develop extensive silica skeletons, except for the early-diverging lineage of sponges. The mechanisms underlying metazoan silicification remain incompletely understood, despite significant biotechnological and evolutionary implications. Here, the characterization of two proteins identified from hexactinellid sponge silica, hexaxilin and perisilin, supports that the three classes of siliceous sponges (Hexactinellida, Demospongiae, and Homoscleromorpha) use independent protein machineries to build their skeletons, which become non-homologous structures. Hexaxilin forms the axial filament to intracellularly pattern the main symmetry of the skeletal parts, while perisilin appears to operate in their thickening, guiding extracellular deposition of peripheral silica, as does glassin, a previously characterized hexactinellid silicifying protein. Distant hexaxilin homologs occur in some bilaterians with siliceous parts, suggesting putative conserved silicifying activity along metazoan evolution. The findings also support that ancestral Porifera were non-skeletonized, acquiring silica skeletons only after diverging into major classes, what reconciles molecular-clock dating and the fossil record.
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Affiliation(s)
- Katsuhiko Shimizu
- Platform for Community-based Research and Education, Tottori University, 4-101, Koyama-cho, Minami, Tottori, 680-8550, Japan.
| | - Michika Nishi
- Division of Agricultural Science, Graduate studies of Sustainability Science, Tottori University Graduate School, 4-101, Koyama-cho, Minami, Tottori, 680-8553, Japan
| | - Yuto Sakate
- Division of Agricultural Science, Graduate studies of Sustainability Science, Tottori University Graduate School, 4-101, Koyama-cho, Minami, Tottori, 680-8553, Japan
| | - Haruka Kawanami
- Department of Life Environmental Agriculture, Faculty of Agriculture, Tottori University, 4-101, Koyama-cho, Minami, Tottori, 680-8553, Japan
| | - Tomohiro Bito
- Department of Life Environmental Agriculture, Faculty of Agriculture, Tottori University, 4-101, Koyama-cho, Minami, Tottori, 680-8553, Japan
| | - Jiro Arima
- Department of Life Environmental Agriculture, Faculty of Agriculture, Tottori University, 4-101, Koyama-cho, Minami, Tottori, 680-8553, Japan
| | - Laia Leria
- Sponge Ecobiology and Biotechnology Group, Center for Advanced Studies of Blanes (CEAB, CSIC), Blanes, 17300, Spain
| | - Manuel Maldonado
- Sponge Ecobiology and Biotechnology Group, Center for Advanced Studies of Blanes (CEAB, CSIC), Blanes, 17300, Spain.
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Checa AG, Salas C, Varela-Feria FM, Rodríguez-Navarro AB, Grenier C, Kamenev GM, Harper EM. Crystallographic control of the fabrication of an extremely sophisticated shell surface microornament in the glass scallop Catillopecten. Sci Rep 2022; 12:11510. [PMID: 35798957 PMCID: PMC9262964 DOI: 10.1038/s41598-022-15796-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Accepted: 06/29/2022] [Indexed: 11/17/2022] Open
Abstract
The external surface microornament of the glass scallops Catillopecten natalyae and malyutinae is made by calcitic spiny projections consisting of a stem that later divides into three equally spaced and inclined branches (here called aerials). C. natalyae contains larger and smaller aerials, whereas C. malyutinae only secreted aerials of the second type. A remarkable feature is that aerials within each type are fairly similar in size and shape and highly co-oriented, thus constituting a most sophisticated microornament. We demonstrate that aerials are single crystals whose morphology is strongly controlled by the crystallography, with the stem being parallel to the c-axis of calcite, and the branches extending along the edges of the {104} calcite rhombohedron. They grow epitaxially onto the foliated prisms of the outer shell layer. The co-orientation of the prisms explains that of the aerials. We have developed a model in which every aerial grows within a periostracal pouch. When this pouch reaches the growth margin, the mantle initiates the production of the aerial. Nevertheless, later growth of the aerial is remote, i.e. far from the contact with the mantle. We show how such an extremely sophisticated microornament has a morphology and co-orientation which are determined by crystal growth.
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Affiliation(s)
- Antonio G Checa
- Department of Stratigraphy and Paleontology, University of Granada, 18071, Granada, Spain. .,Instituto Andaluz de Ciencias de La Tierra, CSIC-University of Granada, 18100, Armilla, Spain.
| | - Carmen Salas
- Department of Animal Biology, University of Málaga, 29071, Málaga, Spain
| | | | | | - Christian Grenier
- Department of Stratigraphy and Paleontology, University of Granada, 18071, Granada, Spain
| | - Gennady M Kamenev
- A.V. Zhirmunsky National Scientific Center of Marine Biology, Far Eastern Branch, Russian Academy of Sciences, Vladivostok, 690041, Russia
| | - Elizabeth M Harper
- Department of Earth Sciences, University of Cambridge, Cambridge, CB2 3EQ, UK
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3
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Ben-tabou de-Leon S. The Evolution of Biomineralization through the Co-Option of Organic Scaffold Forming Networks. Cells 2022; 11:595. [PMID: 35203246 PMCID: PMC8870065 DOI: 10.3390/cells11040595] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2022] [Revised: 02/07/2022] [Accepted: 02/08/2022] [Indexed: 12/05/2022] Open
Abstract
Biomineralization is the process in which organisms use minerals to generate hard structures like teeth, skeletons and shells. Biomineralization is proposed to have evolved independently in different phyla through the co-option of pre-existing developmental programs. Comparing the gene regulatory networks (GRNs) that drive biomineralization in different species could illuminate the molecular evolution of biomineralization. Skeletogenesis in the sea urchin embryo was extensively studied and the underlying GRN shows high conservation within echinoderms, larval and adult skeletogenesis. The organic scaffold in which the calcite skeletal elements form in echinoderms is a tubular compartment generated by the syncytial skeletogenic cells. This is strictly different than the organic cartilaginous scaffold that vertebrates mineralize with hydroxyapatite to make their bones. Here I compare the GRNs that drive biomineralization and tubulogenesis in echinoderms and in vertebrates. The GRN that drives skeletogenesis in the sea urchin embryo shows little similarity to the GRN that drives bone formation and high resemblance to the GRN that drives vertebrates’ vascular tubulogenesis. On the other hand, vertebrates’ bone-GRNs show high similarity to the GRNs that operate in the cells that generate the cartilage-like tissues of basal chordate and invertebrates that do not produce mineralized tissue. These comparisons suggest that biomineralization in deuterostomes evolved through the phylum specific co-option of GRNs that control distinct organic scaffolds to mineralization.
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Kertmen A, Petrenko I, Schimpf C, Rafaja D, Petrova O, Sivkov V, Nekipelov S, Fursov A, Stelling AL, Heimler K, Rogoll A, Vogt C, Ehrlich H. Calcite Nanotuned Chitinous Skeletons of Giant Ianthella basta Marine Demosponge. Int J Mol Sci 2021; 22:ijms222212588. [PMID: 34830470 PMCID: PMC8621073 DOI: 10.3390/ijms222212588] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2021] [Revised: 11/16/2021] [Accepted: 11/19/2021] [Indexed: 12/15/2022] Open
Abstract
Marine sponges were among the first multicellular organisms on our planet and have survived to this day thanks to their unique mechanisms of chemical defense and the specific design of their skeletons, which have been optimized over millions of years of evolution to effectively inhabit the aquatic environment. In this work, we carried out studies to elucidate the nature and nanostructural organization of three-dimensional skeletal microfibers of the giant marine demosponge Ianthella basta, the body of which is a micro-reticular, durable structure that determines the ideal filtration function of this organism. For the first time, using the battery of analytical tools including three-dimensional micro—X-ray Fluorescence (3D-µXRF), X-ray diffraction (XRD), infra-red (FTIR), Raman and Near Edge X-ray Fine Structure (NEXAFS) spectroscopy, we have shown that biomineral calcite is responsible for nano-tuning the skeletal fibers of this sponge species. This is the first report on the presence of a calcitic mineral phase in representatives of verongiid sponges which belong to the class Demospongiae. Our experimental data suggest a possible role for structural amino polysaccharide chitin as a template for calcification. Our study suggests further experiments to elucidate both the origin of calcium carbonate inside the skeleton of this sponge and the mechanisms of biomineralization in the surface layers of chitin microfibers saturated with bromotyrosines, which have effective antimicrobial properties and are responsible for the chemical defense of this organism. The discovery of the calcified phase in the chitinous template of I. basta skeleton is expected to broaden the knowledge in biomineralization science where the calcium carbonate is regarded as a valuable material for applications in biomedicine, environmental science, and even in civil engineering.
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Affiliation(s)
- Ahmet Kertmen
- Center of Advanced Technology, Adam Mickiewicz University, Uniwersytetu Poznańskiego 10, 61-614 Poznan, Poland; (A.K.); (I.P.)
| | - Iaroslav Petrenko
- Center of Advanced Technology, Adam Mickiewicz University, Uniwersytetu Poznańskiego 10, 61-614 Poznan, Poland; (A.K.); (I.P.)
- Institute of Electronics and Sensor Materials, TU Bergakademie Freiberg, Gustav-Zeuner-Str. 3, Raum 307, 09599 Freiberg, Germany;
| | - Christian Schimpf
- Institute of Materials Science, TU Bergakademie Freiberg, Gustav-Zeuner Str. 5, 09599 Freiberg, Germany; (C.S.); (D.R.)
| | - David Rafaja
- Institute of Materials Science, TU Bergakademie Freiberg, Gustav-Zeuner Str. 5, 09599 Freiberg, Germany; (C.S.); (D.R.)
| | - Olga Petrova
- Institute of Physics and Mathematics of Federal Research Centre Komi Science Center Ural Division of the Russian Academy of Sciences (IPM FRC Komi SC UrB RAS), 167982 Syktyvkar, Russia; (O.P.); (V.S.); (S.N.)
| | - Viktor Sivkov
- Institute of Physics and Mathematics of Federal Research Centre Komi Science Center Ural Division of the Russian Academy of Sciences (IPM FRC Komi SC UrB RAS), 167982 Syktyvkar, Russia; (O.P.); (V.S.); (S.N.)
| | - Sergey Nekipelov
- Institute of Physics and Mathematics of Federal Research Centre Komi Science Center Ural Division of the Russian Academy of Sciences (IPM FRC Komi SC UrB RAS), 167982 Syktyvkar, Russia; (O.P.); (V.S.); (S.N.)
| | - Andriy Fursov
- Institute of Electronics and Sensor Materials, TU Bergakademie Freiberg, Gustav-Zeuner-Str. 3, Raum 307, 09599 Freiberg, Germany;
| | - Allison L. Stelling
- Department of Chemistry and Biochemistry, The University of Texas at Dallas, 800 W Campbell Rd, Richardson, TX 75080, USA;
| | - Korbinian Heimler
- Institute of Analytical Chemistry, TU Bergakademie Freiberg, 09599 Freiberg, Germany; (K.H.); (A.R.); (C.V.)
| | - Anika Rogoll
- Institute of Analytical Chemistry, TU Bergakademie Freiberg, 09599 Freiberg, Germany; (K.H.); (A.R.); (C.V.)
| | - Carla Vogt
- Institute of Analytical Chemistry, TU Bergakademie Freiberg, 09599 Freiberg, Germany; (K.H.); (A.R.); (C.V.)
| | - Hermann Ehrlich
- Center of Advanced Technology, Adam Mickiewicz University, Uniwersytetu Poznańskiego 10, 61-614 Poznan, Poland; (A.K.); (I.P.)
- Institute of Electronics and Sensor Materials, TU Bergakademie Freiberg, Gustav-Zeuner-Str. 3, Raum 307, 09599 Freiberg, Germany;
- Correspondence:
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Abehsera S, Bentov S, Li X, Weil S, Manor R, Sagi S, Li S, Li F, Khalaila I, Aflalo ED, Sagi A. Genes encoding putative bicarbonate transporters as a missing molecular link between molt and mineralization in crustaceans. Sci Rep 2021; 11:11722. [PMID: 34083647 PMCID: PMC8175698 DOI: 10.1038/s41598-021-91155-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Accepted: 05/17/2021] [Indexed: 01/08/2023] Open
Abstract
During their life, crustaceans undergo several molts, which if theoretically compared to the human body would be equivalent to replacing all bones at a single event. Such a dramatic repetitive event is coupled to unique molecular mechanisms of mineralization so far mostly unknown. Unlike human bone mineralized with calcium phosphate, the crustacean exoskeleton is mineralized mainly by calcium carbonate. Crustacean growth thus necessitates well-timed mobilization of bicarbonate to specific extracellular sites of biomineralization at distinct molt cycle stages. Here, by looking at the crayfish Cherax quadricarinatus at different molting stages, we suggest that the mechanisms of bicarbonate ion transport for mineralization in crustaceans involve the SLC4 family of transporters and that these proteins play a key role in the tight coupling between molt cycle events and mineral deposition. This discovery of putative bicarbonate transporters in a pancrustacean with functional genomic evidence from genes encoding the SLC4 family-mostly known for their role in pH control-is discussed in the context of the evolution of calcium carbonate biomineralization.
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Affiliation(s)
- Shai Abehsera
- Department of Life Sciences, Ben-Gurion University of the Negev, P.O. Box 653, 8410501, Beer Sheva, Israel
- The National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Beer-Sheva, Israel
| | - Shmuel Bentov
- Department of Life Sciences, Ben-Gurion University of the Negev, P.O. Box 653, 8410501, Beer Sheva, Israel
- The National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Beer-Sheva, Israel
| | - Xuguang Li
- Freshwater Fisheries Research Institute of Jiangsu Province, Nanjing, People's Republic of China
| | - Simy Weil
- Department of Life Sciences, Ben-Gurion University of the Negev, P.O. Box 653, 8410501, Beer Sheva, Israel
- The National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Beer-Sheva, Israel
| | - Rivka Manor
- Department of Life Sciences, Ben-Gurion University of the Negev, P.O. Box 653, 8410501, Beer Sheva, Israel
- The National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Beer-Sheva, Israel
| | - Shahar Sagi
- Department of Life Sciences, Ben-Gurion University of the Negev, P.O. Box 653, 8410501, Beer Sheva, Israel
| | - Shihao Li
- Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, People's Republic of China
| | - Fuhua Li
- Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, People's Republic of China
| | - Isam Khalaila
- Department of Biotechnology Engineering, Ben-Gurion University of the Negev, Beer-Sheva, Israel
| | - Eliahu D Aflalo
- Department of Life Sciences, Ben-Gurion University of the Negev, P.O. Box 653, 8410501, Beer Sheva, Israel
- Department of Life Sciences, Achva Academic College, Arugot, Israel
| | - Amir Sagi
- Department of Life Sciences, Ben-Gurion University of the Negev, P.O. Box 653, 8410501, Beer Sheva, Israel.
- The National Institute for Biotechnology in the Negev, Ben-Gurion University of the Negev, Beer-Sheva, Israel.
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6
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Voigt O, Fradusco B, Gut C, Kevrekidis C, Vargas S, Wörheide G. Carbonic Anhydrases: An Ancient Tool in Calcareous Sponge Biomineralization. Front Genet 2021; 12:624533. [PMID: 33897759 PMCID: PMC8058475 DOI: 10.3389/fgene.2021.624533] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2020] [Accepted: 02/26/2021] [Indexed: 11/13/2022] Open
Abstract
Enzymes of the α-carbonic anhydrase gene family (CAs) are essential for the deposition of calcium carbonate biominerals. In calcareous sponges (phylum Porifera, class Calcarea), specific CAs are involved in the formation of calcite spicules, a unique trait and synapomorphy of this class. However, detailed studies on the CA repertoire of calcareous sponges exist for only two species of one of the two Calcarea subclasses, the Calcaronea. The CA repertoire of the second subclass, the Calcinea, has not been investigated so far, leaving a considerable gap in our knowledge about this gene family in Calcarea. Here, using transcriptomic analysis, phylogenetics, and in situ hybridization, we study the CA repertoire of four additional species of calcareous sponges, including three from the previously unsampled subclass Calcinea. Our data indicate that the last common ancestor of Calcarea had four ancestral CAs with defined subcellular localizations and functions (mitochondrial/cytosolic, membrane-bound, and secreted non-catalytic). The evolution of membrane-bound and secreted CAs involved gene duplications and losses, whereas mitochondrial/cytosolic and non-catalytic CAs are evidently orthologous genes. Mitochondrial/cytosolic CAs are biomineralization-specific genes recruited for biomineralization in the last common ancestor of calcareous sponges. The spatial-temporal expression of these CAs differs between species, which may reflect differences between subclasses or be related to the secondary thickening of spicules during biomineralization that does not occur in all species. With this study, we extend the understanding of the role and the evolution of a key biomineralization gene in calcareous sponges.
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Affiliation(s)
- Oliver Voigt
- Department of Earth and Environmental Sciences, Palaeontology and Geobiology, Ludwig-Maximilians-Universität München, Munich, Germany
| | - Benedetta Fradusco
- Department of Earth and Environmental Sciences, Palaeontology and Geobiology, Ludwig-Maximilians-Universität München, Munich, Germany
| | - Carolin Gut
- Department of Earth and Environmental Sciences, Palaeontology and Geobiology, Ludwig-Maximilians-Universität München, Munich, Germany
| | - Charalampos Kevrekidis
- Department of Earth and Environmental Sciences, Palaeontology and Geobiology, Ludwig-Maximilians-Universität München, Munich, Germany
| | - Sergio Vargas
- Department of Earth and Environmental Sciences, Palaeontology and Geobiology, Ludwig-Maximilians-Universität München, Munich, Germany
| | - Gert Wörheide
- Department of Earth and Environmental Sciences, Palaeontology and Geobiology, Ludwig-Maximilians-Universität München, Munich, Germany.,GeoBio-Center, Ludwig-Maximilians-Universität München, Munich, Germany.,SNSB-Bayerische Staatssammlung für Paläontologie und Geologie, Munich, Germany
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7
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Fierro-Constaín L, Rocher C, Marschal F, Schenkelaars Q, Séjourné N, Borchiellini C, Renard E. In Situ Hybridization Techniques in the Homoscleromorph Sponge Oscarella lobularis. Methods Mol Biol 2021; 2219:181-194. [PMID: 33074541 DOI: 10.1007/978-1-0716-0974-3_11] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
The Porifera are one of the best candidates as the sister group to all other metazoans. Studies on this phylum are therefore expected to shed light on the origin and early evolution of key animal features. Transcriptomic or genomic data acquired during the last 10 years have highlighted the conservation of most of the main genes and pathways involved in the development of the other metazoans. The next step is to determine how similar genetic tool boxes can result in widely dissimilar body plan organization, dynamics, and life histories. To answer these questions, three main axes of research are necessary: (1) conducting more gene expression studies; (2) developing knockdown protocols; and (3) reinterpreting sponge cell biology using modern tools. In this chapter we focus on the in situ hybridization (ISH) technique, needed to establish the spatiotemporal expression of genes, both on whole mount individuals and paraffin sections, and at different stages of development (adults, embryos, larvae, buds) of the homoscleromorph sponge Oscarella lobularis.
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Affiliation(s)
| | - Caroline Rocher
- Aix Marseille Univ, Avignon Université, CNRS, IRD, IMBE, Marseille, France
| | - Florent Marschal
- Aix Marseille Univ, Avignon Université, CNRS, IRD, IMBE, Marseille, France
| | - Quentin Schenkelaars
- Department of Genetics and Evolution, Faculty of Sciences, Institute of Genetics and Genomics in Geneva (IGe3), University of Geneva, Geneva, Switzerland
- Aix Marseille Univ, Avignon Université, CNRS, IRD, IMBE, Marseille, France
| | - Nina Séjourné
- Aix Marseille Univ, Avignon Université, CNRS, IRD, IMBE, Marseille, France
| | | | - Emmanuelle Renard
- Aix Marseille Univ, Avignon Université, CNRS, IRD, IMBE, Marseille, France.
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8
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Qin W, Wang CY, Ma YX, Shen MJ, Li J, Jiao K, Tay FR, Niu LN. Microbe-Mediated Extracellular and Intracellular Mineralization: Environmental, Industrial, and Biotechnological Applications. Adv Mater 2020; 32:e1907833. [PMID: 32270552 DOI: 10.1002/adma.201907833] [Citation(s) in RCA: 50] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2019] [Revised: 01/09/2020] [Indexed: 06/11/2023]
Abstract
Microbe-mediated mineralization is ubiquitous in nature, involving bacteria, fungi, viruses, and algae. These mineralization processes comprise calcification, silicification, and iron mineralization. The mechanisms for mineral formation include extracellular and intracellular biomineralization. The mineral precipitating capability of microbes is often harnessed for green synthesis of metal nanoparticles, which are relatively less toxic compared with those synthesized through physical or chemical methods. Microbe-mediated mineralization has important applications ranging from pollutant removal and nonreactive carriers, to other industrial and biomedical applications. Herein, the different types of microbe-mediated biomineralization that occur in nature, their mechanisms, as well as their applications are elucidated to create a backdrop for future research.
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Affiliation(s)
- Wen Qin
- State Key Laboratory of Military Stomatology & National Clinical Research Center for Oral Diseases & Shaanxi Key Laboratory of Stomatology, Department of Prosthodontics, School of Stomatology, The Fourth Military Medical University, Xi'an, 710032, Shaanxi, China
| | - Chen-Yu Wang
- State Key Laboratory of Military Stomatology & National Clinical Research Center for Oral Diseases & Shaanxi Key Laboratory of Stomatology, Department of Prosthodontics, School of Stomatology, The Fourth Military Medical University, Xi'an, 710032, Shaanxi, China
| | - Yu-Xuan Ma
- State Key Laboratory of Military Stomatology & National Clinical Research Center for Oral Diseases & Shaanxi Key Laboratory of Stomatology, Department of Prosthodontics, School of Stomatology, The Fourth Military Medical University, Xi'an, 710032, Shaanxi, China
| | - Min-Juan Shen
- State Key Laboratory of Military Stomatology & National Clinical Research Center for Oral Diseases & Shaanxi Key Laboratory of Stomatology, Department of Prosthodontics, School of Stomatology, The Fourth Military Medical University, Xi'an, 710032, Shaanxi, China
| | - Jing Li
- State Key Laboratory of Military Stomatology & National Clinical Research Center for Oral Diseases & Shaanxi Key Laboratory of Stomatology, Department of Prosthodontics, School of Stomatology, The Fourth Military Medical University, Xi'an, 710032, Shaanxi, China
| | - Kai Jiao
- State Key Laboratory of Military Stomatology & National Clinical Research Center for Oral Diseases & Shaanxi Key Laboratory of Stomatology, Department of Prosthodontics, School of Stomatology, The Fourth Military Medical University, Xi'an, 710032, Shaanxi, China
| | - Franklin R Tay
- College of Graduate Studies, Augusta University, Augusta, GA, 30912, USA
| | - Li-Na Niu
- State Key Laboratory of Military Stomatology & National Clinical Research Center for Oral Diseases & Shaanxi Key Laboratory of Stomatology, Department of Prosthodontics, School of Stomatology, The Fourth Military Medical University, Xi'an, 710032, Shaanxi, China
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9
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Murdock DJE. The ‘biomineralization toolkit’ and the origin of animal skeletons. Biol Rev Camb Philos Soc 2020; 95:1372-1392. [DOI: 10.1111/brv.12614] [Citation(s) in RCA: 44] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2020] [Revised: 04/28/2020] [Accepted: 04/30/2020] [Indexed: 12/29/2022]
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10
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Funayama N. Produce, carry/position, and connect: morphogenesis using rigid materials. Curr Opin Genet Dev 2019; 57:91-97. [PMID: 31546193 DOI: 10.1016/j.gde.2019.08.001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2019] [Revised: 08/01/2019] [Accepted: 08/02/2019] [Indexed: 10/26/2022]
Abstract
Animal morphogenesis can be summarized as a reconfiguration of a mass of cells. Although extracellular matrices that include rigid skeletal elements, such as cartilage/bones and exoskeletons, have important roles in morphogenesis, they are also secreted in situ by accumulated cells or epithelial cells. In contrast, recent studies of the skeleton construction of sponges (Porifera) illuminate a conceptually different mechanism of morphogenesis in which cells manipulate rather fine rigid materials (spicules) to form larger structures. Here, two different types of sponge skeleton formation using calcareous spicules or siliceous spicules are compared with regard to the concept of the production of rigid materials and their use in skeletons. The comparison highlights the advantages of their different strategies of forming sponge skeletons.
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Affiliation(s)
- Noriko Funayama
- Department of Biophysics, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.
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11
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Adams J, Draper GW, Shoemark D, Adams J. Modelling the early evolution of extracellular matrix from modern Ctenophores and Sponges. Essays Biochem 2019; 63:389-405. [DOI: 10.1042/ebc20180048] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2019] [Revised: 07/29/2019] [Accepted: 08/01/2019] [Indexed: 12/14/2022]
Abstract
AbstractAnimals (metazoans) include some of the most complex living organisms on Earth, with regard to their multicellularity, numbers of differentiated cell types, and lifecycles. The metazoan extracellular matrix (ECM) is well-known to have major roles in the development of tissues during embryogenesis and in maintaining homoeostasis throughout life, yet insight into the ECM proteins which may have contributed to the transition from unicellular eukaryotes to multicellular animals remains sparse. Recent phylogenetic studies place either ctenophores or poriferans as the closest modern relatives of the earliest emerging metazoans. Here, we review the literature and representative genomic and transcriptomic databases for evidence of ECM and ECM-affiliated components known to be conserved in bilaterians, that are also present in ctenophores and/or poriferans. Whereas an extensive set of related proteins are identifiable in poriferans, there is a strikingly lack of conservation in ctenophores. From this perspective, much remains to be learnt about the composition of ctenophore mesoglea. The principal ECM-related proteins conserved between ctenophores, poriferans, and bilaterians include collagen IV, laminin-like proteins, thrombospondin superfamily members, integrins, membrane-associated proteoglycans, and tissue transglutaminase. These are candidates for a putative ancestral ECM that may have contributed to the emergence of the metazoans.
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Cong PY, Harvey THP, Williams M, Siveter DJ, Siveter DJ, Gabbott SE, Li YJ, Wei F, Hou XG. Naked chancelloriids from the lower Cambrian of China show evidence for sponge-type growth. Proc Biol Sci 2019; 285:rspb.2018.0296. [PMID: 29925613 DOI: 10.1098/rspb.2018.0296] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2018] [Accepted: 05/25/2018] [Indexed: 11/12/2022] Open
Abstract
Chancelloriids are an extinct group of spiny Cambrian animals of uncertain phylogenetic position. Despite their sponge-like body plan, their spines are unlike modern sponge spicules, but share several features with the sclerites of certain Cambrian bilaterians, notably halkieriids. However, a proposed homology of these 'coelosclerites' implies complex transitions in body plan evolution. A new species of chancelloriid, Allonnia nuda, from the lower Cambrian (Stage 3) Chengjiang Lagerstätte is distinguished by its large size and sparse spination, with modified apical sclerites surrounding an opening into the body cavity. The sclerite arrangement in A. nuda and certain other chancelloriids indicates that growth involved sclerite addition in a subapical region, thus maintaining distinct zones of body sclerites and apical sclerites. This pattern is not seen in halkieriids, but occurs in some modern calcarean sponges. With scleritome assembly consistent with a sponge affinity, and in the absence of cnidarian- or bilaterian-grade features, it is possible to interpret chancelloriids as sponges with an unusually robust outer epithelium, strict developmental control of body axis formation, distinctive spicule-like structures and, by implication, minute ostia too small to be resolved in fossils. In this light, chancelloriids may contribute to the emerging picture of high disparity among early sponges.
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Affiliation(s)
- Pei-Yun Cong
- Yunnan Key Laboratory for Palaeobiology, Yunnan University, Kunming 650091, People's Republic of China .,Department of Earth Sciences, The Natural History Museum, Cromwell Road, London SW7 5BD, UK.,MEC International Joint Laboratory for Palaeobiology and Palaeoenvironment, Yunnan University, Kunming 650091, People's Republic of China
| | - Thomas H P Harvey
- MEC International Joint Laboratory for Palaeobiology and Palaeoenvironment, Yunnan University, Kunming 650091, People's Republic of China .,School of Geography, Geology and the Environment, University of Leicester, University Road, Leicester, LE1 7RH, UK
| | - Mark Williams
- MEC International Joint Laboratory for Palaeobiology and Palaeoenvironment, Yunnan University, Kunming 650091, People's Republic of China.,School of Geography, Geology and the Environment, University of Leicester, University Road, Leicester, LE1 7RH, UK
| | - David J Siveter
- MEC International Joint Laboratory for Palaeobiology and Palaeoenvironment, Yunnan University, Kunming 650091, People's Republic of China.,School of Geography, Geology and the Environment, University of Leicester, University Road, Leicester, LE1 7RH, UK
| | - Derek J Siveter
- MEC International Joint Laboratory for Palaeobiology and Palaeoenvironment, Yunnan University, Kunming 650091, People's Republic of China.,Earth Collections, Oxford University Museum of Natural History, Parks Road, Oxford OX1 3PW, UK.,Department of Earth Sciences, University of Oxford, South Parks Road, Oxford OX1 3PR, UK
| | - Sarah E Gabbott
- MEC International Joint Laboratory for Palaeobiology and Palaeoenvironment, Yunnan University, Kunming 650091, People's Republic of China.,School of Geography, Geology and the Environment, University of Leicester, University Road, Leicester, LE1 7RH, UK
| | - Yu-Jing Li
- Yunnan Key Laboratory for Palaeobiology, Yunnan University, Kunming 650091, People's Republic of China.,MEC International Joint Laboratory for Palaeobiology and Palaeoenvironment, Yunnan University, Kunming 650091, People's Republic of China.,School of Geography, Geology and the Environment, University of Leicester, University Road, Leicester, LE1 7RH, UK
| | - Fan Wei
- Yunnan Key Laboratory for Palaeobiology, Yunnan University, Kunming 650091, People's Republic of China.,MEC International Joint Laboratory for Palaeobiology and Palaeoenvironment, Yunnan University, Kunming 650091, People's Republic of China
| | - Xian-Guang Hou
- Yunnan Key Laboratory for Palaeobiology, Yunnan University, Kunming 650091, People's Republic of China.,MEC International Joint Laboratory for Palaeobiology and Palaeoenvironment, Yunnan University, Kunming 650091, People's Republic of China
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Borisenko I, Podgornaya OI, Ereskovsky AV. From traveler to homebody: Which signaling mechanisms sponge larvae use to become adult sponges? Advances in Protein Chemistry and Structural Biology 2019; 116:421-449. [DOI: 10.1016/bs.apcsb.2019.02.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
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Aguilar-Camacho JM, Doonan L, McCormack GP. Evolution of the main skeleton-forming genes in sponges (phylum Porifera) with special focus on the marine Haplosclerida (class Demospongiae). Mol Phylogenet Evol 2019; 131:245-53. [PMID: 30502904 DOI: 10.1016/j.ympev.2018.11.015] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Revised: 10/26/2018] [Accepted: 11/19/2018] [Indexed: 01/14/2023]
Abstract
The skeletons of sponges (Phylum Porifera) are comprised of collagen, often embedded with small siliceous structures (spicules) arranged in various forms to provide strength and flexibility. The main proteins responsible for the formation of the spicules in demosponges are the silicateins, which are related to the cathepsins L of other animals. While the silicatein active site, necessary for the formation of biosilica crystals, is characterized by the amino acids SHN, different variants of the silicatein genes have been found, some that retain SHN at the active site and some that don't. As part of an effort to further understand skeleton formation in marine sponges of the order Haplosclerida, a search for all silicatein variants were made in Irish species representing the main clades of this large sponge group. For this task, transcriptomes were sequenced and de novo assembled from Haliclona oculata, H. simulans and H. indistincta. Silicatein genes were identified from these and all available genomes and transcriptomes from Porifera. These were analysed along with all complete silicateins from GenBank. Silicateins were only found in species belonging to the class Demospongiae but excluding Keratosa and Verongimorpha and there was significant duplication and diversity of these genes. Silicateins showing SHN at the active site were polyphyletic. Indeed silicatein sequences were divided into six major clades (CHNI, CHNII, CHNIII, SHNI, SHNII and C/SQN). In those clades where haplosclerids were well represented the silicatein phylogeny reflected previous ribosomal and mitochondrial topologies. The most basal silicatein clade (CHNI) contained sequences only from marine haplosclerids and freshwater sponges while one silicatein from H. indistincta was more related to cathepsins L (outgroup) than to the overall silicatein clade indicating the presence of an old silicatein or an intermediary form. This data could suggest that marine haplosclerids were one of the first groups of extant demosponges to acquire silicatein genes. Furthermore, we suggest that the paucity of spicule types in this group may be due to their single copy of SHNI variants, and the lack of a silintaphin gene.
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