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Suzuki R, Kanno Y, Abril-Urias P, Seo M, Escobar C, Tsai AYL, Sawa S. Local auxin synthesis mediated by YUCCA4 induced during root-knot nematode infection positively regulates gall growth and nematode development. Front Plant Sci 2022; 13:1019427. [PMID: 36466293 PMCID: PMC9709418 DOI: 10.3389/fpls.2022.1019427] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Accepted: 10/25/2022] [Indexed: 06/17/2023]
Abstract
Parasites and pathogens are known to manipulate the host's endogenous signaling pathways to facilitate the infection process. In particular, plant-parasitic root-knot nematodes (RKN) are known to elicit auxin response at the infection sites, to aid the development of root galls as feeding sites for the parasites. Here we describe the role of local auxin synthesis induced during RKN infection. Exogenous application of auxin synthesis inhibitors decreased RKN gall formation rates, gall size and auxin response in galls, while auxin and auxin analogues produced the opposite effects, re-enforcing the notion that auxin positively regulates RKN gall formation. Among the auxin biosynthesis enzymes, YUCCA4 (YUC4) was found to be dramatically up-regulated during RKN infection, suggesting it may be a major contributor to the auxin accumulation during gall formation. However, yuc4-1 showed only very transient decrease in gall auxin levels and did not show significant changes in RKN infection rates, implying the loss of YUC4 is likely compensated by other auxin sources. Nevertheless, yuc4-1 plants produced significantly smaller galls with fewer mature females and egg masses, confirming that auxin synthesized by YUC4 is required for proper gall formation and RKN development within. Interestingly, YUC4 promoter was also activated during cyst nematode infection. These lines of evidence imply auxin biosynthesis from multiple sources, one of them being YUC4, is induced upon plant endoparasitic nematode invasion and likely contribute to their infections. The coordination of these different auxins adds another layer of complexity of hormonal regulations during plant parasitic nematode interaction.
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Affiliation(s)
- Reira Suzuki
- Faculty of Advanced Science and Technology, Kumamoto University, Kumamoto, Japan
- International Research Organization for Advanced Science and Technology (IROAST), Kumamoto University, Kumamoto, Japan
| | - Yuri Kanno
- Dormancy and Adaptation Research Unit, RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, Japan
| | - Patricia Abril-Urias
- Facultad de Ciencias Ambientales y Bioquímica, Área de Fisiología Vegetal, Universidad de Castilla-La Mancha, Toledo, Spain
| | - Mitsunori Seo
- Dormancy and Adaptation Research Unit, RIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, Japan
| | - Carolina Escobar
- International Research Organization for Advanced Science and Technology (IROAST), Kumamoto University, Kumamoto, Japan
- Facultad de Ciencias Ambientales y Bioquímica, Área de Fisiología Vegetal, Universidad de Castilla-La Mancha, Toledo, Spain
| | - Allen Yi-Lun Tsai
- Faculty of Advanced Science and Technology, Kumamoto University, Kumamoto, Japan
- International Research Center for Agricultural & Environmental Biology, Kumamoto University, Kumamoto, Japan
| | - Shinichiro Sawa
- Faculty of Advanced Science and Technology, Kumamoto University, Kumamoto, Japan
- International Research Organization for Advanced Science and Technology (IROAST), Kumamoto University, Kumamoto, Japan
- International Research Center for Agricultural & Environmental Biology, Kumamoto University, Kumamoto, Japan
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Yang W, Xiang P. Changes of Fruit Abscission and Carbohydrates, Hormones, Related Gene Expression in the Fruit and Pedicel of Macadamia under Starvation Stress. Horticulturae 2022; 8:398. [DOI: 10.3390/horticulturae8050398] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
In order toexplore the regulation mechanism of macadamia fruitlet abscission induced by ‘starvation stress’, a treatment of girdling and defoliation was applied to the bearing shoots of macadamia cultivar ‘H2’ at the early stage of fruit development, simulating the starvation stress induced by interrupting carbon supply to fruit. The levels of carbohydrates, hormones, and related gene expression in the different tissues (husk, seed, and pedicel) were investigated after treatment. The results showed that a severe fruit drop occurred 3~5 d after starvation stress treatment. The contents of glucose, fructose, and sucrose in both the husk and the seed were significantly decreased, as well as the fructose and sucrose in the pedicel; this large reduction occurred prior to the massive fruit shedding. Starvation stress significantly reduced the GA3 and ZR contents and enhanced the ABA level in the pedicel and the seed, whereas it did not obviously change these hormones in the husk. After treatment, IAA content decreased considerably in both the husk and seed but increased remarkably in the pedicel. In the husk, the expression of genes related to sugar metabolism and signaling (NI, HXK2, TPS, and TPP), as well as the biosynthesis of ethylene (ACO2 and ACS) and ABA (NCED1.1 and AAO3), was significantly upregulated by starvation stress, as well as the stress-responsive transcription factors (AP2/ERF, HD-ZIP12, bZIP124, and ABI5), whereas the BG gene associated with ABA accumulation and the early auxin-responsive genes (Aux/IAA22 and GH3.9) were considerably suppressed during the period of massive fruit abscission. Similar changes in the expression of all genes occurred in the pedicel, except for NI and AP2/ERF, the expression of which was significantly upregulated during the early stage of fruit shedding and downregulated during the period of severe fruit drop. These results suggest that complicated crosstalk among the sugar, IAA, and ABA signaling may be related to macadamia fruitlet abscission induced by carbohydrate starvation.
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Cabot C, Sibole JV, Barceló J, Poschenrieder C. Luxury zinc supply acts as antiaging agent and enhances reproductive fitness in Arabidopsis thaliana. Plant Sci 2021; 304:110805. [PMID: 33568305 DOI: 10.1016/j.plantsci.2020.110805] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2020] [Revised: 12/13/2020] [Accepted: 12/16/2020] [Indexed: 06/12/2023]
Abstract
Developmental senescence in plants is an age dependent process affected by phytohormones, nutrient status, and environmental factors, while the antiaging effects of zinc are recognized in humans. This study explores the possible influence of a high, non-toxic Zn-supply (12 μM) on senescence and reproductive fitness in A. thaliana. Auxin-resistance mutant, axr1-12, and auxin overexpressing YUCCA6 mutant, yuc6-1D, and their corresponding background genotypes were grown until complete rosette senescence to quantify the fruit biomass and seed number. Gene expression of different antioxidant, auxin and senescence-associated markers were analyzed after the onset of senescence. All mutants showed delayed developmental senescence. Luxury Zn delayed senescence in wild type, but not in the mutant genotypes. Excluding axr1-12 mutants, which showed very low expression of the auxin gene marker INDOLE-3-ACETIC ACID INDUCIBLE 2 (IAA2), enhanced expression of the senescence markers SENESCENCE-ASSOCIATED GENE 12 (SAG12) and AUXIN RESPONSE FACTOR 2 (ARF2) coincided with decreased expression of IAA2. Delayed senescence and total number of seeds per plant were related to higher expression of the peroxisomal antioxidant enzymes Cu/Zn superoxide dismutase (SOD3) and catalase (CAT2). These results evidence that high Zn-induced delayed senescence and improved reproductive fitness in Arabidopsis are related to an auxin-independent mechanism that retains antioxidant activity.
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Affiliation(s)
- Catalina Cabot
- Department of Biology, Universitat de les Illes Balears, 07122 Palma, Spain.
| | - John V Sibole
- Department of Biology, Universitat de les Illes Balears, 07122 Palma, Spain
| | - Juan Barceló
- Plant Physiology Laboratory, Bioscience Faculty, Universitat Autònoma de Barcelona, 08193 Bellaterra, Spain
| | - Charlotte Poschenrieder
- Plant Physiology Laboratory, Bioscience Faculty, Universitat Autònoma de Barcelona, 08193 Bellaterra, Spain
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Abebie B, Philosoph-Hadas S, Riov J, Huberman M, Goren R, Meir S. Raising the pH of the Pulsing Solution Improved the Acropetal Transport of NAA and 2,4-D and Their Efficacy in Reducing Floret Bud Abscission of Red Cestrum Cut Flowers. Front Plant Sci 2020; 11:825. [PMID: 32670317 PMCID: PMC7327294 DOI: 10.3389/fpls.2020.00825] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/06/2020] [Accepted: 05/22/2020] [Indexed: 06/11/2023]
Abstract
The use of auxins to improve the vase life of cut flowers is very limited. Previous studies demonstrated that a pulse treatment of Red Cestrum (Cestrum elegans Schlecht.) cut flowers with 2,4-dichlorophenoxyacetic acid (2,4-D) significantly reduced floret bud abscission, whereas 1-naphthaleneacetic acid (NAA) was ineffective. This difference resulted, at least in part, from the higher acropetal transport capability of 2,4-D compared to that of NAA. The present research focused on examining the factors affecting the acropetal transport, and hence the efficacy of the two auxins in reducing floret bud abscission of Red Cestrum cut flowers. We assumed that the differential acropetal transport capability of the two auxins results from the difference in their dissociation constants (pKa), with values of 2.75 and 4.23 for 2,4-D and NAA, respectively, which affects their pH-dependent physicochemical properties. Thus, increasing the pH of the pulsing solution above the pKa of both auxins might improve their acropetal movement. Indeed, the results of the present research show that raising the pH of the pulsing solution to pH 7.0 and above improved the efficacy of the two auxins in reducing floret bud abscission, with a higher effect on 2,4-D than that on NAA. Raising the pH of the pulsing solution decreased the adsorption and/or uptake of the two auxins by the cells adjacent to the xylem vessels, leading to an increase in their acropetal transport. The high pH of the pulsing solution increased the dissociation and hence decreased the lipophilicity of the auxin molecules, leading to improved acropetal movement. This effect was corroborated by the significant reduction in their 1-octanol/water partition coefficient (K OW ) values with the increase in the pH. A significant increase in the CeIAA1 transcript level was obtained in response to 2,4-D pulsing at pH 7.0 and 8.25 and to NAA pulsing at pH 8.25, indicating that the acropetally transported auxins were taken up by the cells under these conditions. Our data suggest that raising the pH of the pulsing solution would significantly contribute to the increased efficacy of auxins in improving the vase life of cut flowers.
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Affiliation(s)
- Bekele Abebie
- Department of Postharvest Science, Agricultural Research Organization, The Volcani Center, Rishon LeZion, Israel
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Sonia Philosoph-Hadas
- Department of Postharvest Science, Agricultural Research Organization, The Volcani Center, Rishon LeZion, Israel
| | - Joseph Riov
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Moshe Huberman
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Raphael Goren
- The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, Israel
| | - Shimon Meir
- Department of Postharvest Science, Agricultural Research Organization, The Volcani Center, Rishon LeZion, Israel
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Lin WJ, Ho HC, Chu SC, Chou JY. Effects of auxin derivatives on phenotypic plasticity and stress tolerance in five species of the green alga Desmodesmus (Chlorophyceae, Chlorophyta). PeerJ 2020; 8:e8623. [PMID: 32195045 PMCID: PMC7067201 DOI: 10.7717/peerj.8623] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2019] [Accepted: 01/22/2020] [Indexed: 01/03/2023] Open
Abstract
Green microalgae of the genus Desmodesmus are characterized by a high degree of phenotypic plasticity (i.e. colony morphology), allowing them to be truly cosmopolitan and withstand environmental fluctuations. This flexibility enables Desmodesmus to produce a phenotype–environment match across a range of environments broader compared to algae with more fixed phenotypes. Indoles and their derivatives are a well-known crucial class of heterocyclic compounds and are widespread in different species of plants, animals, and microorganisms. Indole-3-acetic acid (IAA) is the most common, naturally occurring plant hormone of the auxin class. IAA may behave as a signaling molecule in microorganisms, and the physiological cues of IAA may also trigger phenotypic plasticity responses in Desmodesmus. In this study, we demonstrated that the changes in colonial morphs (cells per coenobium) of five species of the green alga Desmodesmus were specific to IAA but not to the chemically more stable synthetic auxins, naphthalene-1-acetic acid and 2,4-dichlorophenoxyacetic acid. Moreover, inhibitors of auxin biosynthesis and polar auxin transport inhibited cell division. Notably, different algal species (even different intraspecific strains) exhibited phenotypic plasticity different to that correlated to IAA. Thus, the plasticity involving individual-level heterogeneity in morphological characteristics may be crucial for microalgae to adapt to changing or novel conditions, and IAA treatment potentially increases the tolerance of Desmodesmus algae to several stress conditions. In summary, our results provide circumstantial evidence for the hypothesized role of IAA as a diffusible signal in the communication between the microalga and microorganisms. This information is crucial for elucidation of the role of plant hormones in plankton ecology.
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Affiliation(s)
- Wei-Jiun Lin
- Department of Biology, National Changhua University of Education, Changhua, Taiwan
| | - Han-Chen Ho
- Department of Anatomy, Tzu Chi University, Hualien, Taiwan
| | - Sheng-Chang Chu
- Department of Biology, National Changhua University of Education, Changhua, Taiwan
| | - Jui-Yu Chou
- Department of Biology, National Changhua University of Education, Changhua, Taiwan
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Denisov Y, Glick S, Zviran T, Ish-Shalom M, Levin A, Faigenboim A, Cohen Y, Irihimovitch V. Distinct organ-specific and temporal expression profiles of auxin-related genes during mango fruitlet drop. Plant Physiol Biochem 2017; 115:439-448. [PMID: 28456120 DOI: 10.1016/j.plaphy.2017.04.021] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2016] [Revised: 03/26/2017] [Accepted: 04/23/2017] [Indexed: 06/07/2023]
Abstract
In mango, fruitlet abscission initiates with a decrease in polar auxin transport through the abscission zone (AZ), triggered by ethylene. To explore the molecular components affecting this process, we initially conducted experiments with developing fruitlet explants in which fruitlet drop was induced by ethephon, and monitored the expression patterns of distinct indole-3-acetic acid (IAA)-related genes, comparing control vs. ethephon-treated pericarp and AZ profiles. Over the examined time period (48 h), the accumulation of MiPIN1 and MiLAX2 IAA-efflux and influx genes decreased in both control and treated tissues. Nevertheless, ethephon-treated tissues displayed significantly lower levels of these transcripts within 18-24 h. An opposite pattern was observed for MiLAX3, which overall exhibited up-regulation in treated fruitlet tissues. Ethephon treatment also induced an early and pronounced down-regulation of five out of six IAA-responsive genes, and a substantial reduction in the accumulation of two IAA-synthesis related transcripts, contrasting with significant up-regulation of Gretchen Hagen3 transcript (MiGH3.1) encoding an IAA-amino synthetase. Furthermore, for both control and treated AZ, the decrease in IAA-carrier transcripts was associated with a decrease in IAA content and an increase in IAA-Asp:IAA ratio, suggesting that fruitlet drop is accompanied by formation of this non-hydrolyzed IAA-amino acid conjugate. Despite these similarities, ethephon-treated AZ displayed a sharper decrease in IAA content and higher IAA-Asp:IAA ratio within 18 h. Lastly, the response of IAA-related genes to exogenous IAA treatment was also examined. Our results are discussed, highlighting the roles that distinct IAA-related genes might assume during mango fruitlet drop.
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Affiliation(s)
- Youlia Denisov
- Institute of Plant Sciences, The Volcani Center, Agricultural Research Organization, Bet-Dagan 50250, Israel
| | - Shani Glick
- Institute of Plant Sciences, The Volcani Center, Agricultural Research Organization, Bet-Dagan 50250, Israel; Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat Gan, Israel
| | - Tali Zviran
- Institute of Plant Sciences, The Volcani Center, Agricultural Research Organization, Bet-Dagan 50250, Israel
| | - Mazal Ish-Shalom
- Institute of Plant Sciences, The Volcani Center, Agricultural Research Organization, Bet-Dagan 50250, Israel
| | - Adolfo Levin
- Migal - Galilee Technology Center, P.O. Box 831, Kiryat Shemona 11016, Israel
| | - Adi Faigenboim
- Institute of Plant Sciences, The Volcani Center, Agricultural Research Organization, Bet-Dagan 50250, Israel
| | - Yuval Cohen
- Institute of Plant Sciences, The Volcani Center, Agricultural Research Organization, Bet-Dagan 50250, Israel
| | - Vered Irihimovitch
- Institute of Plant Sciences, The Volcani Center, Agricultural Research Organization, Bet-Dagan 50250, Israel.
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Xie R, Pang S, Ma Y, Deng L, He S, Yi S, Lv Q, Zheng Y. The ARF, AUX/IAA and GH3 gene families in citrus: genome-wide identification and expression analysis during fruitlet drop from abscission zone A. Mol Genet Genomics 2015; 290:2089-105. [PMID: 25982744 DOI: 10.1007/s00438-015-1063-1] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2015] [Accepted: 04/30/2015] [Indexed: 12/20/2022]
Abstract
Completion of the whole genome sequencing of citrus enabled us to perform genome-wide identification and functional analysis of the gene families involved in agronomic traits and morphological diversity of citrus. In this study, 22 CitARF, 11 CitGH3 and 26 CitAUX/IAA genes were identified in citrus, respectively. Phylogenetic analysis revealed that all the genes of each gene family could be subdivided into three groups and showed strong evolutionary conservation. The GH3 and AUX/IAA gene families shrank and ARF gene family was highly conserved in the citrus genome after speciation from Arabidopsis thaliana. Tissue-specific expression profiles revealed that 54 genes were expressed in at least one tissue while just 5 genes including CitARF07, CitARF20, CitGH3.04, CitAUX/IAA25 and CitAUX/IAA26 with very low expression level in all tissues tested, suggesting that the CitARF, CitGH3 and CitAUX/IAA gene families played important roles in the development of citrus organs. In addition, our data found that the expression of 2 CitARF, 4 CitGH3 and 4 AUX/IAA genes was affected by IAA treatment, and 7 genes including, CitGH3.04, CitGH3.07, CitAUX/IAA03, CitAUX/IAA04, CitAUX/IAA18, CitAUX/IAA19 and CitAUX/IAA23 were related to fruitlet abscission. This study provides a foundation for future studies on elucidating the precise role of citrus ARF, GH3 and AUX/IAA genes in early steps of auxin signal transduction and open up a new opportunity to uncover the molecular mechanism underlying citrus fruitlet abscission.
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Amarasinghe R, Poldy J, Matsuba Y, Barrow RA, Hemmi JM, Pichersky E, Peakall R. UV-B light contributes directly to the synthesis of chiloglottone floral volatiles. Ann Bot 2015; 115:693-703. [PMID: 25649114 PMCID: PMC4343295 DOI: 10.1093/aob/mcu262] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2014] [Revised: 10/27/2014] [Accepted: 12/09/2014] [Indexed: 05/25/2023]
Abstract
BACKGROUND AND AIMS Australian sexually deceptive Chiloglottis orchids attract their specific male wasp pollinators by means of 2,5-dialkylcyclohexane-1,3-diones or 'chiloglottones', representing a newly discovered class of volatiles with unique structures. This study investigated the hypothesis that UV-B light at low intensities is directly required for chiloglottone biosynthesis in Chiloglottis trapeziformis. METHODS Chiloglottone production occurs only in specific tissue (the callus) of the labellum. Cut buds and flowers, and whole plants with buds and flowers, sourced from the field, were kept in a growth chamber and interactions between growth stage of the flowers and duration and intensity of UV-B exposure on chiloglottone production were studied. The effects of the protein synthesis inhibitor cycloheximide were also examined. KEY RESULTS Chiloglottone was not present in buds, but was detected in buds that were manually opened and then exposed to sunlight, or artificial UV-B light for ≥5 min. Spectrophotometry revealed that the sepals and petals blocked UV-B light from reaching the labellum inside the bud. Rates of chiloglottone production increased with developmental stage, increasing exposure time and increasing UV-B irradiance intensity. Cycloheximide did not inhibit the initial production of chiloglottone within 5 min of UV-B exposure. However, inhibition of chiloglottone production by cycloheximide occurred over 2 h of UV-B exposure, indicating a requirement for de novo protein synthesis to sustain chiloglottone production under UV-B. CONCLUSIONS The sepals and petals of Chiloglottis orchids strongly block UV-B wavelengths of light, preventing chiloglottone production inside the bud. While initiation of chiloglottone biosynthesis requires only UV-B light, sustained chiloglottone biosynthesis requires both UV-B and de novo protein biosynthesis. The internal amounts of chiloglottone in a flower reflect the interplay between developmental stage, duration and intensity of UV-B exposure, de novo protein synthesis, and feedback loops linked to the starting amount of chiloglottone. It is concluded that UV-B light contributes directly to chiloglottone biosynthesis. These findings suggest an entirely new and unexpected biochemical reaction that might also occur in taxa other than these orchids.
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Affiliation(s)
- Ranamalie Amarasinghe
- Evolution, Ecology and Genetics, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia, Research School of Chemistry, The Australian National University, Canberra, ACT 0200, Australia, Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA and School of Animal Biology & Oceans Institute, University of Western Australia, Perth, WA 6009, Australia
| | - Jacqueline Poldy
- Evolution, Ecology and Genetics, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia, Research School of Chemistry, The Australian National University, Canberra, ACT 0200, Australia, Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA and School of Animal Biology & Oceans Institute, University of Western Australia, Perth, WA 6009, Australia
| | - Yuki Matsuba
- Evolution, Ecology and Genetics, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia, Research School of Chemistry, The Australian National University, Canberra, ACT 0200, Australia, Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA and School of Animal Biology & Oceans Institute, University of Western Australia, Perth, WA 6009, Australia
| | - Russell A Barrow
- Evolution, Ecology and Genetics, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia, Research School of Chemistry, The Australian National University, Canberra, ACT 0200, Australia, Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA and School of Animal Biology & Oceans Institute, University of Western Australia, Perth, WA 6009, Australia
| | - Jan M Hemmi
- Evolution, Ecology and Genetics, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia, Research School of Chemistry, The Australian National University, Canberra, ACT 0200, Australia, Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA and School of Animal Biology & Oceans Institute, University of Western Australia, Perth, WA 6009, Australia
| | - Eran Pichersky
- Evolution, Ecology and Genetics, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia, Research School of Chemistry, The Australian National University, Canberra, ACT 0200, Australia, Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA and School of Animal Biology & Oceans Institute, University of Western Australia, Perth, WA 6009, Australia
| | - Rod Peakall
- Evolution, Ecology and Genetics, Research School of Biology, The Australian National University, Canberra, ACT 0200, Australia, Research School of Chemistry, The Australian National University, Canberra, ACT 0200, Australia, Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA and School of Animal Biology & Oceans Institute, University of Western Australia, Perth, WA 6009, Australia
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Sundaresan S, Philosoph-Hadas S, Riov J, Mugasimangalam R, Kuravadi NA, Kochanek B, Salim S, Tucker ML, Meir S. De novo Transcriptome Sequencing and Development of Abscission Zone-Specific Microarray as a New Molecular Tool for Analysis of Tomato Organ Abscission. Front Plant Sci 2015; 6:1258. [PMID: 26834766 PMCID: PMC4712312 DOI: 10.3389/fpls.2015.01258] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/22/2015] [Accepted: 12/24/2015] [Indexed: 05/19/2023]
Abstract
Abscission of flower pedicels and leaf petioles of tomato (Solanum lycopersicum) can be induced by flower removal or leaf deblading, respectively, which leads to auxin depletion, resulting in increased sensitivity of the abscission zone (AZ) to ethylene. However, the molecular mechanisms that drive the acquisition of abscission competence and its modulation by auxin gradients are not yet known. We used RNA-Sequencing (RNA-Seq) to obtain a comprehensive transcriptome of tomato flower AZ (FAZ) and leaf AZ (LAZ) during abscission. RNA-Seq was performed on a pool of total RNA extracted from tomato FAZ and LAZ, at different abscission stages, followed by de novo assembly. The assembled clusters contained transcripts that are already known in the Solanaceae (SOL) genomics and NCBI databases, and over 8823 identified novel tomato transcripts of varying sizes. An AZ-specific microarray, encompassing the novel transcripts identified in this study and all known transcripts from the SOL genomics and NCBI databases, was constructed to study the abscission process. Multiple probes for longer genes and key AZ-specific genes, including antisense probes for all transcripts, make this array a unique tool for studying abscission with a comprehensive set of transcripts, and for mining for naturally occurring antisense transcripts. We focused on comparing the global transcriptomes generated from the FAZ and the LAZ to establish the divergences and similarities in their transcriptional networks, and particularly to characterize the processes and transcriptional regulators enriched in gene clusters that are differentially regulated in these two AZs. This study is the first attempt to analyze the global gene expression in different AZs in tomato by combining the RNA-Seq technique with oligonucleotide microarrays. Our AZ-specific microarray chip provides a cost-effective approach for expression profiling and robust analysis of multiple samples in a rapid succession.
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Affiliation(s)
- Srivignesh Sundaresan
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, The Volcani CenterBet-Dagan, Israel
- The Robert H. Smith Faculty of Agriculture, Food and Environment, The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of JerusalemRehovot, Israel
| | - Sonia Philosoph-Hadas
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, The Volcani CenterBet-Dagan, Israel
| | - Joseph Riov
- The Robert H. Smith Faculty of Agriculture, Food and Environment, The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of JerusalemRehovot, Israel
| | - Raja Mugasimangalam
- Department of Bioinformatics, QTLomics Technologies Pvt. LtdBangalore, India
| | - Nagesh A. Kuravadi
- Department of Bioinformatics, QTLomics Technologies Pvt. LtdBangalore, India
| | - Bettina Kochanek
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, The Volcani CenterBet-Dagan, Israel
| | - Shoshana Salim
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, The Volcani CenterBet-Dagan, Israel
| | - Mark L. Tucker
- Soybean Genomics and Improvement Laboratory, United States Department of Agriculture, Agricultural Research ServiceBeltsville, MD, USA
| | - Shimon Meir
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, The Volcani CenterBet-Dagan, Israel
- *Correspondence: Shimon Meir
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Basu MM, González-Carranza ZH, Azam-Ali S, Tang S, Shahid AA, Roberts JA. The manipulation of auxin in the abscission zone cells of Arabidopsis flowers reveals that indoleacetic acid signaling is a prerequisite for organ shedding. Plant Physiol 2013; 162:96-106. [PMID: 23509178 PMCID: PMC3641234 DOI: 10.1104/pp.113.216234] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2013] [Accepted: 03/14/2013] [Indexed: 05/19/2023]
Abstract
A number of novel strategies were employed to examine the role of indoleacetic acid (IAA) in regulating floral organ abscission in Arabidopsis (Arabidopsis thaliana). Analysis of auxin influx facilitator expression in β-glucuronidase reporter plants revealed that AUXIN RESISTANT1, LIKE AUX1, and LAX3 were specifically up-regulated at the site of floral organ shedding. Flowers from mutants where individual family members were down-regulated exhibited a reduction in the force necessary to bring about petal separation; however, the effect was not additive in double or quadruple mutants. Using the promoter of a polygalacturonase (At2g41850), active primarily in cells undergoing separation, to drive expression of the bacterial genes iaaL and iaaM, we have shown that it is possible to manipulate auxin activity specifically within the floral organ abscission zone (AZ). Analysis of petal breakstrength reveals that if IAA AZ levels are reduced, shedding takes place prematurely, while if they are enhanced, organ loss is delayed. The At2g41850 promoter was also used to transactivate the gain-of-function AXR3-1 gene in order to disrupt auxin signaling specifically within the floral organ AZ cells. Flowers from transactivated lines failed to shed their sepals, petals, and anthers during pod expansion and maturity, and these organs frequently remained attached to the plant even after silique desiccation and dehiscence had taken place. These observations support a key role for IAA in the regulation of abscission in planta and reveal, to our knowledge for the first time, a requirement for a functional IAA signaling pathway in AZ cells for organ shedding to take place.
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Kuang JF, Wu JY, Zhong HY, Li CQ, Chen JY, Lu WJ, Li JG. Carbohydrate stress affecting fruitlet abscission and expression of genes related to auxin signal transduction pathway in litchi. Int J Mol Sci 2012; 13:16084-103. [PMID: 23443112 PMCID: PMC3546680 DOI: 10.3390/ijms131216084] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2012] [Revised: 11/06/2012] [Accepted: 11/16/2012] [Indexed: 01/11/2023] Open
Abstract
Auxin, a vital plant hormone, regulates a variety of physiological and developmental processes. It is involved in fruit abscission through transcriptional regulation of many auxin-related genes, including early auxin responsive genes (i.e., auxin/indole-3-acetic acid (AUX/IAA), Gretchen Hagen3 (GH3) and small auxin upregulated (SAUR)) and auxin response factors (ARF), which have been well characterized in many plants. In this study, totally five auxin-related genes, including one AUX/IAA (LcAUX/IAA1), one GH3 (LcGH3.1), one SAUR (LcSAUR1) and two ARFs (LcARF1 and LcARF2), were isolated and characterized from litchi fruit. LcAUX/IAA1, LcGH3.1, LcSAUR1, LcARF1 and LcARF2 contain open reading frames (ORFs) encoding polypeptides of 203, 613, 142, 792 and 832 amino acids, respectively, with their corresponding molecular weights of 22.67, 69.20, 11.40, 88.20 and 93.16 kDa. Expression of these genes was investigated under the treatment of girdling plus defoliation which aggravated litchi fruitlet abscission due to the blockage of carbohydrates transport and the reduction of endogenous IAA content. Results showed that transcript levels of LcAUX/IAA1, LcGH3.1 and LcSAUR1 mRNAs were increased after the treatment in abscission zone (AZ) and other tissues, in contrast to the decreasing accumulation of LcARF1 mRNA, suggesting that LcAUX/IAA1, LcSAUR1 and LcARF1 may play more important roles in abscission. Our results provide new insight into the process of fruitlet abscission induced by carbohydrate stress and broaden our understanding of the auxin signal transduction pathway in this process at the molecular level.
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Affiliation(s)
- Jian-Fei Kuang
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources/Guangdong Key Laboratory for Postharvest Science, College of Horticulture, South China Agricultural University, Guangzhou 510642, China; E-Mails: (J.-F.K.); (H.-Y.Z.); (J.-Y.C.); (W.-J.L.)
| | - Jian-Yang Wu
- China Litchi Research Center, South China Agricultural University, Guangzhou 510642, China; E-Mails: (J.-Y.W.); (C.-Q.L.)
- College of Basic Education, Zhanjiang Normal University, Zhanjiang 524037, China
| | - Hai-Ying Zhong
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources/Guangdong Key Laboratory for Postharvest Science, College of Horticulture, South China Agricultural University, Guangzhou 510642, China; E-Mails: (J.-F.K.); (H.-Y.Z.); (J.-Y.C.); (W.-J.L.)
| | - Cai-Qin Li
- China Litchi Research Center, South China Agricultural University, Guangzhou 510642, China; E-Mails: (J.-Y.W.); (C.-Q.L.)
| | - Jian-Ye Chen
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources/Guangdong Key Laboratory for Postharvest Science, College of Horticulture, South China Agricultural University, Guangzhou 510642, China; E-Mails: (J.-F.K.); (H.-Y.Z.); (J.-Y.C.); (W.-J.L.)
| | - Wang-Jin Lu
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources/Guangdong Key Laboratory for Postharvest Science, College of Horticulture, South China Agricultural University, Guangzhou 510642, China; E-Mails: (J.-F.K.); (H.-Y.Z.); (J.-Y.C.); (W.-J.L.)
| | - Jian-Guo Li
- China Litchi Research Center, South China Agricultural University, Guangzhou 510642, China; E-Mails: (J.-Y.W.); (C.-Q.L.)
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Meir S, Philosoph-Hadas S, Sundaresan S, Selvaraj KSV, Burd S, Ophir R, Kochanek B, Reid MS, Jiang CZ, Lers A. Microarray analysis of the abscission-related transcriptome in the tomato flower abscission zone in response to auxin depletion. Plant Physiol 2010; 154:1929-56. [PMID: 20947671 PMCID: PMC2996037 DOI: 10.1104/pp.110.160697] [Citation(s) in RCA: 139] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2010] [Accepted: 10/10/2010] [Indexed: 05/18/2023]
Abstract
The abscission process is initiated by changes in the auxin gradient across the abscission zone (AZ) and is triggered by ethylene. Although changes in gene expression have been correlated with the ethylene-mediated execution of abscission, there is almost no information on the molecular and biochemical basis of the increased AZ sensitivity to ethylene. We examined transcriptome changes in the tomato (Solanum lycopersicum 'Shiran 1335') flower AZ during the rapid acquisition of ethylene sensitivity following flower removal, which depletes the AZ from auxin, with or without preexposure to 1-methylcyclopropene or application of indole-3-acetic acid after flower removal. Microarray analysis using the Affymetrix Tomato GeneChip revealed changes in expression, occurring prior to and during pedicel abscission, of many genes with possible regulatory functions. They included a range of auxin- and ethylene-related transcription factors, other transcription factors and regulatory genes that are transiently induced early, 2 h after flower removal, and a set of novel AZ-specific genes. All gene expressions initiated by flower removal and leading to pedicel abscission were inhibited by indole-3-acetic acid application, while 1-methylcyclopropene pretreatment inhibited only the ethylene-induced expressions, including those induced by wound-associated ethylene signals. These results confirm our hypothesis that acquisition of ethylene sensitivity in the AZ is associated with altered expression of auxin-regulated genes resulting from auxin depletion. Our results shed light on the regulatory control of abscission at the molecular level and further expand our knowledge of auxin-ethylene cross talk during the initial controlling stages of the process.
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Affiliation(s)
- Shimon Meir
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, The Volcani Center, Bet-Dagan 50250, Israel.
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Liu DJ, Chen JY, Lu WJ. Expression and regulation of the early auxin-responsive Aux/IAA genes during strawberry fruit development. Mol Biol Rep 2010; 38:1187-93. [PMID: 20563652 DOI: 10.1007/s11033-010-0216-x] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2010] [Accepted: 06/11/2010] [Indexed: 01/29/2023]
Abstract
The plant hormone auxin transcriptionally activates Aux/IAA genes. Auxin plays an important role in regulating fruit growth and ripening of strawberry and Aux/IAA genes have been extensively studied in Arabidopsis, rice and tomato, but little information is available on strawberry fruit. In the present work, two full-length of early auxin-responsive Aux/IAA genes, termed FaAux/IAA1 and FaAux/IAA2 respectively, were isolated and characterized from strawberry fruit. Moreover, the expression profiles of two FaAux/IAA genes during fruit development, and the effect of naphthalene acetic acid (NAA) on their expressions of fruits at two different developmental stages were also investigated. The results showed that the levels of FaAux/IAA1 and FaAux/IAA2 transcripts were very high at early stage of fruit development, and decreased sharply at ripening stage (after white stage). In addition, NAA applied at the stage of large green and white fruit obviously increased the accumulations of FaAux/IAA1 and FaAux/IAA2 transcripts. These data suggested that the expressions of both FaAux/IAA1 and FaAux/IAA2 genes were likely to be involved in early fruit development, and the enhancement of FaAux/IAAs transcripts might be attributed at least or partially to auxin-induced fruit growth and delayed fruit ripening of strawberry.
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Affiliation(s)
- Du-juan Liu
- Guangdong Key Laboratory for Postharvest Science, College of Horticultural Science, South China Agricultural University, Guangzhou, 510642, People's Republic of China
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Dal Cin V, Velasco R, Ramina A. Dominance induction of fruitlet shedding in Malus x domestica (L. Borkh): molecular changes associated with polar auxin transport. BMC Plant Biol 2009; 9:139. [PMID: 19941659 PMCID: PMC2809502 DOI: 10.1186/1471-2229-9-139] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2009] [Accepted: 11/26/2009] [Indexed: 05/22/2023]
Abstract
BACKGROUND Apple fruitlet abscission is induced by dominance, a process in which hormones such as auxin, cytokinins and strigolactone play a pivotal role. The response to these hormones is controlled by transcription regulators such as Aux/IAA and ARR, whereas auxin transport is controlled by influx and efflux carriers. RESULTS Seven partial clones encoding auxin efflux carriers (MdPIN1_A, MdPIN1_B, MdPIN10_A, MdPIN10_B, MdPIN4, MdPIN7_A and MdPIN7_B), three encoding auxin influx carriers (MdLAX1, MdLAX2 and MdLAX3) and three encoding type A ARR cytokinin response regulators (MdARR3, MdARR4 and MdARR6) were isolated by the use of degenerate primers. The organization of the PIN multigene family in apple is closer to Medicago truncatula than to Arabidopsis thaliana. The genes are differentially expressed in diverse plant organs and at different developmental stages. MdPIN1 and MdPIN7 are largely more expressed than MdPIN10 and MdPIN4. During abscission, the transcription of these genes increased in the cortex whereas in the seed a sharp fall was observed. The expression of these genes was found to be at least partially controlled by ethylene and auxin. CONCLUSION The ethylene burst preceding abscission of fruitlets may be responsible for the decrease in transcript level of MDPIN1, MDARR5 and MDIAA3 in seed. This situation modulates the status of the fruitlet and its fate by hampering the PAT from the seeds down through the abscission zone (AZ) and this brings about the shedding of the fruitlet.
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Affiliation(s)
- Valeriano Dal Cin
- Department of Environmental Agronomy and Crop Science, University of Padova, Viale dell'Università 16, 35020 Legnaro (Padova), Italy
- Horticultural Sciences, University of Florida, Gainesville, PO Box 116090, USA
| | - Riccardo Velasco
- Experimental Institute for Agriculture, via Mach 2 San Michele all'Adige, 38010 Trento, Italy
| | - Angelo Ramina
- Department of Environmental Agronomy and Crop Science, University of Padova, Viale dell'Università 16, 35020 Legnaro (Padova), Italy
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Agustí J, Merelo P, Cercós M, Tadeo FR, Talón M. Comparative transcriptional survey between laser-microdissected cells from laminar abscission zone and petiolar cortical tissue during ethylene-promoted abscission in citrus leaves. BMC Plant Biol 2009; 9:127. [PMID: 19852773 PMCID: PMC2770498 DOI: 10.1186/1471-2229-9-127] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2009] [Accepted: 10/23/2009] [Indexed: 05/18/2023]
Abstract
BACKGROUND Abscission is the cell separation process by which plants are able to shed organs. It has a great impact on the yield of most crop plants. At the same time, the process itself also constitutes an excellent model to study cell separation processes, since it occurs in concrete areas known as abscission zones (AZs) which are composed of a specific cell type. However, molecular approaches are generally hampered by the limited area and cell number constituting the AZ. Therefore, detailed studies at the resolution of cell type are of great relevance in order to accurately describe the process and to identify potential candidate genes for biotechnological applications. RESULTS Efficient protocols for the isolation of specific citrus cell types, namely laminar abscission zone (LAZ) and petiolar cortical (Pet) cells based on laser capture microdissection (LCM) and for RNA microextraction and amplification have been developed. A comparative transcriptome analysis between LAZ and Pet from citrus leaf explants subjected to an in-vitro 24 h ethylene treatment was performed utilising microarray hybridization and analysis. Our analyses of gene functional classes differentially represented in ethylene-treated LAZ revealed an activation program dominated by the expression of genes associated with protein synthesis, protein fate, cell type differentiation, development and transcription. The extensive repertoire of genes associated with cell wall biosynthesis and metabolism strongly suggests that LAZ layers activate both catabolic and anabolic wall modification pathways during the abscission program. In addition, over-representation of particular members of different transcription factor families suggests important roles for these genes in the differentiation of the effective cell separation layer within the many layers contained in the citrus LAZ. Preferential expression of stress-related and defensive genes in Pet reveals that this tissue is likely to be reprogrammed to prevent pathogen attacks and general abiotic stresses after organ shedding. CONCLUSION The LCM-based data generated in this survey represent the most accurate description of the main biological processes and genes involved in organ abscission in citrus. This study provides novel molecular insight into ethylene-promoted leaf abscission and identifies new putative target genes for characterization and manipulation of organ abscission in citrus.
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Affiliation(s)
- Javier Agustí
- Instituto Valenciano de Investigaciones Agrarias - Centro de Genómica. Carretera Moncada-Náquera Km. 4,5. 46113 Moncada (Valencia) Spain
- Gregor Mendel Institute of Plant Molecular Biology, Austrian Academy of Sciences, Dr. Bohr-Gasse 3, 1030 Vienna, Austria
| | - Paz Merelo
- Instituto Valenciano de Investigaciones Agrarias - Centro de Genómica. Carretera Moncada-Náquera Km. 4,5. 46113 Moncada (Valencia) Spain
| | - Manuel Cercós
- Instituto Valenciano de Investigaciones Agrarias - Centro de Genómica. Carretera Moncada-Náquera Km. 4,5. 46113 Moncada (Valencia) Spain
| | - Francisco R Tadeo
- Instituto Valenciano de Investigaciones Agrarias - Centro de Genómica. Carretera Moncada-Náquera Km. 4,5. 46113 Moncada (Valencia) Spain
| | - Manuel Talón
- Instituto Valenciano de Investigaciones Agrarias - Centro de Genómica. Carretera Moncada-Náquera Km. 4,5. 46113 Moncada (Valencia) Spain
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