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Brice Azangue A, Megam Ngouonkadi EB, Kabong Nono M, Fotsin HB, Sone Ekonde M, Yemele D. Stability and synchronization in neural network with delayed synaptic connections. CHAOS (WOODBURY, N.Y.) 2024; 34:013117. [PMID: 38215223 DOI: 10.1063/5.0175408] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Accepted: 12/04/2023] [Indexed: 01/14/2024]
Abstract
In this paper, we investigate the stability of the synchronous state in a complex network using the master stability function technique. We use the extended Hindmarsh-Rose neuronal model including time delayed electrical, chemical, and hybrid couplings. We find the corresponding master stability equation that describes the whole dynamics for each coupling mode. From the maximum Lyapunov exponent, we deduce the stability state for each coupling mode. We observe that for electrical coupling, there exists a mixing between stable and unstable states. For a good setting of some system parameters, the position and the size of unstable areas can be modified. For chemical coupling, we observe difficulties in having a stable area in the complex plane. For hybrid coupling, we observe a stable behavior in the whole system compared to the case where these couplings are considered separately. The obtained results for each coupling mode help to analyze the stability state of some network topologies by using the corresponding eigenvalues. We observe that using electrical coupling can involve a full or partial stability of the system. In the case of chemical coupling, unstable states are observed whereas in the case of hybrid interactions a full stability of the network is obtained. Temporal analysis of the global synchronization is also done for each coupling mode, and the results show that when the network is stable, the synchronization is globally observed, while in the case when it is unstable, its nodes are not globally synchronized.
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Affiliation(s)
- A Brice Azangue
- Research Unit of Condensed Matter, Electronics and Signal Processing, Department of Physics, Faculty of Science, University of Dschang, P.O. Box 067 Dschang, Cameroon
| | - E B Megam Ngouonkadi
- Research Unit of Condensed Matter, Electronics and Signal Processing, Department of Physics, Faculty of Science, University of Dschang, P.O. Box 067 Dschang, Cameroon
- Department of Electrical and Electronic Engineering, College of Technology (COT), University of Buea, P.O. Box 63 Buea, Cameroon
| | - M Kabong Nono
- Research Unit of Condensed Matter, Electronics and Signal Processing, Department of Physics, Faculty of Science, University of Dschang, P.O. Box 067 Dschang, Cameroon
| | - H B Fotsin
- Research Unit of Condensed Matter, Electronics and Signal Processing, Department of Physics, Faculty of Science, University of Dschang, P.O. Box 067 Dschang, Cameroon
| | - M Sone Ekonde
- Department of Electrical and Electronic Engineering, College of Technology (COT), University of Buea, P.O. Box 63 Buea, Cameroon
| | - D Yemele
- Research Unit of Mechanics and Modeling of Physical Systems, Department of Physics, Faculty of Sciences, University of Dschang, P.O. Box 067 Dschang, Cameroon
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Wu F, Meng H, Ma J. Reproduced neuron-like excitability and bursting synchronization of memristive Josephson junctions loaded inductor. Neural Netw 2024; 169:607-621. [PMID: 37956577 DOI: 10.1016/j.neunet.2023.11.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2023] [Revised: 09/25/2023] [Accepted: 11/05/2023] [Indexed: 11/15/2023]
Abstract
Employing electronic component including memristor and Josephson junction to mimic biological neuron or synapse has elicited intense research in recent years. Neurons described by nonlinear oscillators can exhibit complex electrical activities. Josephson junctions are excellent candidates for neuron-inspired components because of their physical properties with low energy costs and high efficiency. In this paper, we revisit a prior work on memristive Josephson junction (MJJ) to identify the dynamical mechanisms to mimic neuron-like excitability and spiking. The inductive memristive Josephson junction (L-MJJ) model is further developed by adding an inductor with internal resistor. It is found that the L-MJJ model can reproduce square-wave bursting of the classical neuronal model from the neurodynamics point of view. The coupling L-MJJ oscillators can achieve in-phase and antiphase bursting synchronization similar with nonlinear coupling neurons. From the framework of nonlinear dynamics theory, this work aspires to build effective bridge between superconducting physics and theoretical neuroscience. Obtained results confirm the potential feasibility of this junction in designing a neuron-inspired computation to explore dynamics of larger-scale neuromorphic network.
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Affiliation(s)
- Fuqiang Wu
- School of Mathematics and Statistics, Ningxia University, Yinchuan 750021, China.
| | - Hao Meng
- College of Mechanical and Vehicle Engineering, Taiyuan University of Technology, Taiyuan 030024, China
| | - Jun Ma
- Department of Physics, Lanzhou University of Technology, Lanzhou 730050, China
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3
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Remi T, Subha PA. In-phase and anti-phase bursting dynamics and synchronisation scenario in neural network by varying coupling phase. J Biol Phys 2023:10.1007/s10867-023-09635-1. [PMID: 37195336 PMCID: PMC10397177 DOI: 10.1007/s10867-023-09635-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2023] [Accepted: 03/29/2023] [Indexed: 05/18/2023] Open
Abstract
We have analysed the synchronisation scenario and the rich spatiotemporal patterns in the network of Hindmarsh-Rose neurons under the influence of self, mixed and cross coupling of state variables which are realised by varying coupling phase. We have introduced a coupling matrix in the model to vary coupling phase. The excitatory and inhibitory couplings in the membrane potential induce in-phase and anti-phase bursting dynamics, respectively, in the two coupled system. When the off-diagonal elements of the matrix are zero, the system shows self coupling of the three variables, which helps to attain synchrony. The off-diagonal elements give cross interactions between the variables, which reduces synchrony. The stability of the synchrony attained is analysed using Lyapunov function approach. In our study, we found that self coupling in three variables is sufficient to induce chimera states in non-local coupling. The strength of incoherence and discontinuity measure validates the existence of chimera and multichimera states. The inhibitor self coupling in local interaction induces interesting patterns like Mixed Oscillatory State and clusters. The results may help in understanding the spatiotemporal communications of the brain, within the limitations of the size of the network analysed in this study.
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Affiliation(s)
- Thazhathethil Remi
- Department of Physics, Farook College University of Calicut, Kerala, India, 673632
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Reyes-Sanchez M, Amaducci R, Sanchez-Martin P, Elices I, Rodriguez FB, Varona P. Automatized offline and online exploration to achieve a target dynamics in biohybrid neural circuits built with living and model neurons. Neural Netw 2023; 164:464-475. [PMID: 37196436 DOI: 10.1016/j.neunet.2023.04.034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2021] [Revised: 03/01/2023] [Accepted: 04/18/2023] [Indexed: 05/19/2023]
Abstract
Biohybrid circuits of interacting living and model neurons are an advantageous means to study neural dynamics and to assess the role of specific neuron and network properties in the nervous system. Hybrid networks are also a necessary step to build effective artificial intelligence and brain hybridization. In this work, we deal with the automatized online and offline adaptation, exploration and parameter mapping to achieve a target dynamics in hybrid circuits and, in particular, those that yield dynamical invariants between living and model neurons. We address dynamical invariants that form robust cycle-by-cycle relationships between the intervals that build neural sequences from such interaction. Our methodology first attains automated adaptation of model neurons to work in the same amplitude regime and time scale of living neurons. Then, we address the automatized exploration and mapping of the synapse parameter space that lead to a specific dynamical invariant target. Our approach uses multiple configurations and parallel computing from electrophysiological recordings of living neurons to build full mappings, and genetic algorithms to achieve an instance of the target dynamics for the hybrid circuit in a short time. We illustrate and validate such strategy in the context of the study of functional sequences in neural rhythms, which can be easily generalized for any variety of hybrid circuit configuration. This approach facilitates both the building of hybrid circuits and the accomplishment of their scientific goal.
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Affiliation(s)
- Manuel Reyes-Sanchez
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, 28049 Madrid, Spain.
| | - Rodrigo Amaducci
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Pablo Sanchez-Martin
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Irene Elices
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, 28049 Madrid, Spain; Sorbonne Université, INSERM, CNRS, Institut de la Vision, 17 rue Moreau, F-75012 Paris, France
| | - Francisco B Rodriguez
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Pablo Varona
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, 28049 Madrid, Spain.
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Variations of the spontaneous electrical activities of the neuronal networks imposed by the exposure of electromagnetic radiations using computational map-based modeling. J Comput Neurosci 2023; 51:187-200. [PMID: 36539556 DOI: 10.1007/s10827-022-00842-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Revised: 12/01/2022] [Accepted: 12/04/2022] [Indexed: 01/15/2023]
Abstract
The interaction between neurons in a neuronal network develops spontaneous electrical activities. But the effects of electromagnetic radiation on these activities have not yet been well explored. In this study, a ring of three coupled 1-dimensional Rulkov neurons and the generated electromagnetic field (EMF) are considered to investigate how the spontaneous activities might change regarding the EMF exposure. By employing the bifurcation analysis and time series, a comprehensive view of neuronal behavioral changes due to electromagnetic inductions is provided. The main findings of this study are as follows: 1) When a neuronal network is showing a spontaneous chaotic firing manner (without any external stimuli), a generated magnetic field inhibits this type of behavior. In fact, EMF completely eliminated the chaotic intrinsic behaviors of the neuronal loop. 2) When the network is exhibiting regular period-3 spiking patterns, the generated magnetic field changes its firing pattern to chaotic spiking, which is similar to epileptic seizures. 3) With weak synaptic connections, electromagnetic radiation inhibits and suppresses neuronal activities. 4) If the external magnetic flux has a high amplitude, it can change the shape of the induction current according to its shape 5) when there are weak synaptic connections in the network, a high-frequency external magnetic flux engenders high-frequency fluctuations in the membrane voltages. On the whole, electromagnetic radiation changes the pattern of the spontaneous activities of neuronal networks in the brain according to synaptic strengths and initial states of the neurons.
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Xu Q, Ju Z, Ding S, Feng C, Chen M, Bao B. Electromagnetic induction effects on electrical activity within a memristive Wilson neuron model. Cogn Neurodyn 2022; 16:1221-1231. [PMID: 36237413 PMCID: PMC9508304 DOI: 10.1007/s11571-021-09764-0] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Revised: 10/11/2021] [Accepted: 11/22/2021] [Indexed: 01/12/2023] Open
Abstract
Neurons can exhibit abundant electrical activities due to physical effects of various electrophysiology environments. The electromagnetic induction flows can be triggered by changes in neuron membrane potential, which can be equivalent to a memristor applying on membrane potential. To imitate the electromagnetic induction effects, we propose a three-variable memristor-based Wilson neuron model. Using several kinetic analysis methods, the memristor parameter- and initial condition-related electrical activities are explored intensively. It is revealed that the memristive Wilson neuron model can display rich electrical activities, including the asymmetric coexisting electrical activities and antimonotonicity phenomenon. Finally, using off-the-shelf discrete components, an analog circuit on a hardware level is implemented to verify the numerically simulated coexisting electrical activities. Studying these rich electrical activities in neurons can build the groundwork to widen the neuron-based engineering applications.
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Affiliation(s)
- Quan Xu
- School of Microelectronics and Control Engineering, Changzhou University, Changzhou, 213164 People’s Republic of China
| | - Zhutao Ju
- School of Microelectronics and Control Engineering, Changzhou University, Changzhou, 213164 People’s Republic of China
| | - Shoukui Ding
- School of Microelectronics and Control Engineering, Changzhou University, Changzhou, 213164 People’s Republic of China
| | - Chengtao Feng
- School of Microelectronics and Control Engineering, Changzhou University, Changzhou, 213164 People’s Republic of China
| | - Mo Chen
- School of Microelectronics and Control Engineering, Changzhou University, Changzhou, 213164 People’s Republic of China
| | - Bocheng Bao
- School of Microelectronics and Control Engineering, Changzhou University, Changzhou, 213164 People’s Republic of China
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He S, Tripanpitak K, Yoshida Y, Takamatsu S, Huang SY, Yu W. Gate Mechanism and Parameter Analysis of Anodal-First Waveforms for Improving Selectivity of C-Fiber Nerves. J Pain Res 2021; 14:1785-1807. [PMID: 34163235 PMCID: PMC8215851 DOI: 10.2147/jpr.s311559] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2021] [Accepted: 05/06/2021] [Indexed: 11/23/2022] Open
Abstract
PURPOSE Few investigations have been conducted on the selective stimulation of small-radius unmyelinated C nerves (C), which are critical to both the recovery of damaged nerves and pain suppression. The purpose of this study is to understand how an anodal pulse in an anodal-first stimulation could improve C-selectivity over myelinated nociceptive Aδ nerves (Aδ) and to further clarify the landscape of the solution space. MATERIALS AND METHODS An adapted Hodgkin-Huxley (HH) model and the McIntyre-Richardson-Grill (MRG) model were used for modeling C and Aδ, respectively, to analyze the underlying ion dynamics and the influence of relevant stimulation waveforms, including monopolar, polarity-symmetric, and asymmetric pulses. RESULTS The results showed that polarity asymmetric waveforms with preceding anodal stimulations benefit C-selectivity the most, underlain by the decrease in the potassium ion current of C. CONCLUSION The optimal parameters for C-selectivity have been identified in the low-frequency band, remarkably benefiting the design of selective stimulation waveforms for the recovery of damaged nerves and pain management.
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Affiliation(s)
- Siyu He
- Graduate School of Engineering, Chiba University, Chiba, Japan
| | | | - Yu Yoshida
- Graduate School of Science and Engineering, Chiba University, Chiba, Japan
| | | | - Shao Ying Huang
- Engineering Product Development, Singapore University of Technology and Design, Singapore
| | - Wenwei Yu
- Graduate School of Science and Engineering, Chiba University, Chiba, Japan
- Center for Frontier Medical Engineering, Chiba University, Chiba, Japan
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Wouapi MK, Fotsin BH, Ngouonkadi EBM, Kemwoue FF, Njitacke ZT. Complex bifurcation analysis and synchronization optimal control for Hindmarsh-Rose neuron model under magnetic flow effect. Cogn Neurodyn 2020; 15:315-347. [PMID: 33854647 DOI: 10.1007/s11571-020-09606-5] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2019] [Revised: 05/26/2020] [Accepted: 06/09/2020] [Indexed: 11/30/2022] Open
Abstract
In this contribution, the complex behaviour of the Hindmarsh-Rose neuron model under magnetic flow effect (mHR) is investigated in terms of bifurcation diagrams, Lyapunov exponent plots and time series when varying only the electromagnetic induction strength. Some exciting phenomena are found including, for instance, various firings patterns by applying appropriate magnetic strength and Hopf-fold bursting through fast-slow bifurcation. In addition to this, the interesting phenomenon of Hopf bifurcation is examined in the model. Thus, we prove that Hopf bifurcation occurs in this memristor-based HR neuron model when an appropriately chosen magnetic flux varies and reaches its critical value. Furthermore, one of the main results of this work was the optimal control approach to realize the synchronization of two mHR. The main advantage of the proposed optimal master-slave synchronization from a control point of view is that, in the practical application, the electrical activities (quiescent, bursting, spiking, period and chaos states) of a neuron can be regulated by a pacemaker (master) associated with biological neuron (slave) to treat some diseases such as epilepsy. A suitable electronic circuit is designed and used for the investigations. PSpice based simulation results confirm that the electrical activities and synchronization between coupled neurons can be modulated by electromagnetic flux.
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Affiliation(s)
- Marcel Kemayou Wouapi
- Unité de Recherche de Matière Condensée, d'Electronique et de Traitement du Signal (URMACETS), Department of Physics, University of Dschang, P.O. Box 67, Dschang, Cameroon
| | - Bertrand Hilaire Fotsin
- Unité de Recherche de Matière Condensée, d'Electronique et de Traitement du Signal (URMACETS), Department of Physics, University of Dschang, P.O. Box 67, Dschang, Cameroon
| | - Elie Bertrand Megam Ngouonkadi
- Department of Electrical and Electronic Engineering, College of Technology (COT), University of Buea, P.O. Box 63, Buea, Cameroon
| | - Florent Feudjio Kemwoue
- Laboratory of Energy-Electric and Electronic Systems, Department of Physics, Faculty of Science, University of Yaoundé I, P.O. Box 812, Yaoundé, Cameroon.,Centre d'Excellence Africain des Technologies de l'Information et de la Communication (CETIC), University of Yaoundé I, P.O. Box 812, Yaoundé, Cameroon
| | - Zeric Tabekoueng Njitacke
- Department of Electrical and Electronic Engineering, College of Technology (COT), University of Buea, P.O. Box 63, Buea, Cameroon
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Bao H, Hu A, Liu W, Bao B. Hidden Bursting Firings and Bifurcation Mechanisms in Memristive Neuron Model With Threshold Electromagnetic Induction. IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS 2020; 31:502-511. [PMID: 30990198 DOI: 10.1109/tnnls.2019.2905137] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Memristors can be employed to mimic biological neural synapses or to describe electromagnetic induction effects. To exhibit the threshold effect of electromagnetic induction, this paper presents a threshold flux-controlled memristor and examines its frequency-dependent pinched hysteresis loops. Using an electromagnetic induction current generated by the threshold memristor to replace the external current in 2-D Hindmarsh-Rose (HR) neuron model, a 3-D memristive HR (mHR) neuron model with global hidden oscillations is established and the corresponding numerical simulations are performed. It is found that due to no equilibrium point, the obtained mHR neuron model always operates in hidden bursting firing patterns, including coexisting hidden bursting firing patterns with bistability also. In addition, the model exhibits complex dynamics of the actual neuron electrical activities, which acts like the 3-D HR neuron model, indicating its feasibility. In particular, by constructing the fold and Hopf bifurcation sets of the fast-scale subsystem, the bifurcation mechanisms of hidden bursting firings are expounded. Finally, circuit experiments on hardware breadboards are deployed and the captured results well match with the numerical results, validating the physical mechanism of biological neuron and the reliability of electronic neuron.
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Reyes-Sanchez M, Amaducci R, Elices I, Rodriguez FB, Varona P. Automatic Adaptation of Model Neurons and Connections to Build Hybrid Circuits with Living Networks. Neuroinformatics 2020; 18:377-393. [PMID: 31930463 DOI: 10.1007/s12021-019-09440-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Abstract
Hybrid circuits built by creating mono- or bi-directional interactions among living cells and model neurons and synapses are an effective way to study neuron, synaptic and neural network dynamics. However, hybrid circuit technology has been largely underused in the context of neuroscience studies mainly because of the inherent difficulty in implementing and tuning this type of interactions. In this paper, we present a set of algorithms for the automatic adaptation of model neurons and connections in the creation of hybrid circuits with living neural networks. The algorithms perform model time and amplitude scaling, real-time drift adaptation, goal-driven synaptic and model tuning/calibration and also automatic parameter mapping. These algorithms have been implemented in RTHybrid, an open-source library that works with hard real-time constraints. We provide validation examples by building hybrid circuits in a central pattern generator. The results of the validation experiments show that the proposed dynamic adaptation facilitates closed-loop communication among living and artificial model neurons and connections, and contributes to characterize system dynamics, achieve control, automate experimental protocols and extend the lifespan of the preparations.
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Affiliation(s)
- Manuel Reyes-Sanchez
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, 28049, Madrid, Spain.
| | - Rodrigo Amaducci
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, 28049, Madrid, Spain
| | - Irene Elices
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, 28049, Madrid, Spain
| | - Francisco B Rodriguez
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, 28049, Madrid, Spain
| | - Pablo Varona
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, 28049, Madrid, Spain.
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Amaducci R, Reyes-Sanchez M, Elices I, Rodriguez FB, Varona P. RTHybrid: A Standardized and Open-Source Real-Time Software Model Library for Experimental Neuroscience. Front Neuroinform 2019; 13:11. [PMID: 30914940 PMCID: PMC6423167 DOI: 10.3389/fninf.2019.00011] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2018] [Accepted: 02/14/2019] [Indexed: 12/05/2022] Open
Abstract
Closed-loop technologies provide novel ways of online observation, control and bidirectional interaction with the nervous system, which help to study complex non-linear and partially observable neural dynamics. These protocols are often difficult to implement due to the temporal precision required when interacting with biological components, which in many cases can only be achieved using real-time technology. In this paper we introduce RTHybrid (www.github.com/GNB-UAM/RTHybrid), a free and open-source software that includes a neuron and synapse model library to build hybrid circuits with living neurons in a wide variety of experimental contexts. In an effort to encourage the standardization of real-time software technology in neuroscience research, we compared different open-source real-time operating system patches, RTAI, Xenomai 3 and Preempt-RT, according to their performance and usability. RTHybrid has been developed to run over Linux operating systems supporting both Xenomai 3 and Preempt-RT real-time patches, and thus allowing an easy implementation in any laboratory. We report a set of validation tests and latency benchmarks for the construction of hybrid circuits using this library. With this work we want to promote the dissemination of standardized, user-friendly and open-source software tools developed for open- and closed-loop experimental neuroscience.
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Affiliation(s)
- Rodrigo Amaducci
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, Madrid, Spain
| | | | | | | | - Pablo Varona
- Grupo de Neurocomputación Biológica, Departamento de Ingeniería Informática, Escuela Politécnica Superior, Universidad Autónoma de Madrid, Madrid, Spain
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12
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Synchronization of Chemical Synaptic Coupling of the Chay Neuron System under Time Delay. APPLIED SCIENCES-BASEL 2018. [DOI: 10.3390/app8060927] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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13
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Mishchenko MA, Gerasimova SA, Lebedeva AV, Lepekhina LS, Pisarchik AN, Kazantsev VB. Optoelectronic system for brain neuronal network stimulation. PLoS One 2018; 13:e0198396. [PMID: 29856855 PMCID: PMC5983492 DOI: 10.1371/journal.pone.0198396] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2017] [Accepted: 05/20/2018] [Indexed: 11/23/2022] Open
Abstract
We propose an optoelectronic system for stimulation of living neurons. The system consists of an electronic circuit based on the FitzHugh–Nagumo model, an optical fiber, and a photoelectrical converter. We used this system for electrical stimulation of hippocampal living neurons in acute hippocampal brain slices (350-μm thick) obtained from a 20–28 days old C57BL/6 mouse or a Wistar rat. The main advantage of our system over other similar stimulators is that it contains an optical fiber for signal transmission instead of metallic wires. The fiber is placed between the electronic circuit and stimulated neurons and provides galvanic isolation from external electrical and magnetic fields. The use of the optical fiber allows avoiding electromagnetic noise and current flows which could affect metallic wires. Furthermore, it gives us the possibility to simulate “synaptic plasticity” by adaptive signal transfer through optical fiber. The proposed optoelectronic system (hybrid neural circuit) provides a very high efficiency in stimulating hippocampus neurons and can be used for restoring brain activity in particular regions or replacing brain parts (neuroprosthetics) damaged due to a trauma or neurodegenerative diseases.
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Affiliation(s)
- Mikhail A. Mishchenko
- National Research Lobachevsky State University of Nizhny Novgorod, Nizhny Novgorod, Russia
- * E-mail:
| | - Svetlana A. Gerasimova
- National Research Lobachevsky State University of Nizhny Novgorod, Nizhny Novgorod, Russia
| | - Albina V. Lebedeva
- National Research Lobachevsky State University of Nizhny Novgorod, Nizhny Novgorod, Russia
| | - Lyubov S. Lepekhina
- National Research Lobachevsky State University of Nizhny Novgorod, Nizhny Novgorod, Russia
| | - Alexander N. Pisarchik
- Center for Biomedical Technology, Technical University of Madrid, Campus Montegancedo, Pozuelo de Alarcón, Madrid, Spain
| | - Victor B. Kazantsev
- National Research Lobachevsky State University of Nizhny Novgorod, Nizhny Novgorod, Russia
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14
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Tang K, Wang Z, Shi X. Electrical Activity in a Time-Delay Four-Variable Neuron Model under Electromagnetic Induction. Front Comput Neurosci 2017; 11:105. [PMID: 29201003 PMCID: PMC5696603 DOI: 10.3389/fncom.2017.00105] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2017] [Accepted: 11/06/2017] [Indexed: 11/13/2022] Open
Abstract
To investigate the effect of electromagnetic induction on the electrical activity of neuron, the variable for magnetic flow is used to improve Hindmarsh–Rose neuron model. Simultaneously, due to the existence of time-delay when signals are propagated between neurons or even in one neuron, it is important to study the role of time-delay in regulating the electrical activity of the neuron. For this end, a four-variable neuron model is proposed to investigate the effects of electromagnetic induction and time-delay. Simulation results suggest that the proposed neuron model can show multiple modes of electrical activity, which is dependent on the time-delay and external forcing current. It means that suitable discharge mode can be obtained by selecting the time-delay or external forcing current, which could be helpful for further investigation of electromagnetic radiation on biological neuronal system.
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Affiliation(s)
- Keming Tang
- School of Information Engineering, Yancheng Teachers University, Yancheng, China
| | - Zuolei Wang
- School of Mathematics and Statistics, Yancheng Teachers University, Yancheng, China
| | - Xuerong Shi
- School of Mathematics and Statistics, Yancheng Teachers University, Yancheng, China
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15
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Malvestio I, Kreuz T, Andrzejak RG. Robustness and versatility of a nonlinear interdependence method for directional coupling detection from spike trains. Phys Rev E 2017; 96:022203. [PMID: 28950642 DOI: 10.1103/physreve.96.022203] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2017] [Indexed: 06/07/2023]
Abstract
The detection of directional couplings between dynamics based on measured spike trains is a crucial problem in the understanding of many different systems. In particular, in neuroscience it is important to assess the connectivity between neurons. One of the approaches that can estimate directional coupling from the analysis of point processes is the nonlinear interdependence measure L. Although its efficacy has already been demonstrated, it still needs to be tested under more challenging and realistic conditions prior to an application to real data. Thus, in this paper we use the Hindmarsh-Rose model system to test the method in the presence of noise and for different spiking regimes. We also examine the influence of different parameters and spike train distances. Our results show that the measure L is versatile and robust to various types of noise, and thus suitable for application to experimental data.
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Affiliation(s)
- Irene Malvestio
- Department of Information and Communication Technologies, Universitat Pompeu Fabra, 08018 Barcelona, Spain
- Department of Physics and Astronomy, University of Florence, 50119 Sesto Fiorentino, Italy
- Institute for Complex Systems, CNR, 50119 Sesto Fiorentino, Italy
| | - Thomas Kreuz
- Institute for Complex Systems, CNR, 50119 Sesto Fiorentino, Italy
| | - Ralph G Andrzejak
- Department of Information and Communication Technologies, Universitat Pompeu Fabra, 08018 Barcelona, Spain
- Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute of Science and Technology, 08028 Barcelona, Spain
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16
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Megam Ngouonkadi EB, Fotsin HB, Kabong Nono M, Louodop Fotso PH. Noise effects on robust synchronization of a small pacemaker neuronal ensemble via nonlinear controller: electronic circuit design. Cogn Neurodyn 2016; 10:385-404. [PMID: 27668018 PMCID: PMC5018014 DOI: 10.1007/s11571-016-9393-1] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2015] [Revised: 05/09/2016] [Accepted: 05/31/2016] [Indexed: 01/19/2023] Open
Abstract
In this paper, we report on the synchronization of a pacemaker neuronal ensemble constituted of an AB neuron electrically coupled to two PD neurons. By the virtue of this electrical coupling, they can fire synchronous bursts of action potential. An external master neuron is used to induce to the whole system the desired dynamics, via a nonlinear controller. Such controller is obtained by a combination of sliding mode and feedback control. The proposed controller is able to offset uncertainties in the synchronized systems. We show how noise affects the synchronization of the pacemaker neuronal ensemble, and briefly discuss its potential benefits in our synchronization scheme. An extended Hindmarsh-Rose neuronal model is used to represent a single cell dynamic of the network. Numerical simulations and Pspice implementation of the synchronization scheme are presented. We found that, the proposed controller reduces the stochastic resonance of the network when its gain increases.
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Affiliation(s)
- Elie Bertrand Megam Ngouonkadi
- Laboratory of Electronics and Signal Processing, Department of Physics, Faculty of Sciences, University of Dschang, P. O. Box 067, Dschang, Cameroon
| | - Hilaire Bertrand Fotsin
- Laboratory of Electronics and Signal Processing, Department of Physics, Faculty of Sciences, University of Dschang, P. O. Box 067, Dschang, Cameroon
| | - Martial Kabong Nono
- Laboratory of Electronics and Signal Processing, Department of Physics, Faculty of Sciences, University of Dschang, P. O. Box 067, Dschang, Cameroon
| | - Patrick Herve Louodop Fotso
- Laboratory of Electronics and Signal Processing, Department of Physics, Faculty of Sciences, University of Dschang, P. O. Box 067, Dschang, Cameroon
- Instituto de Física Teórica, Universidade Estadual Paulista, UNESP, Rua Dr. Bento Teobaldo Ferraz 271, Bloco II, Barra Funda, São Paulo, 01140-070 Brazil
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17
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Kumar R, Bilal S, Ramaswamy R. Synchronization properties of coupled chaotic neurons: The role of random shared input. CHAOS (WOODBURY, N.Y.) 2016; 26:063118. [PMID: 27368783 DOI: 10.1063/1.4954377] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Spike-time correlations of neighbouring neurons depend on their intrinsic firing properties as well as on the inputs they share. Studies have shown that periodically firing neurons, when subjected to random shared input, exhibit asynchronicity. Here, we study the effect of random shared input on the synchronization of weakly coupled chaotic neurons. The cases of so-called electrical and chemical coupling are both considered, and we observe a wide range of synchronization behaviour. When subjected to identical shared random input, there is a decrease in the threshold coupling strength needed for chaotic neurons to synchronize in-phase. The system also supports lag-synchronous states, and for these, we find that shared input can cause desynchronization. We carry out a master stability function analysis for a network of such neurons and show agreement with the numerical simulations. The contrasting role of shared random input for complete and lag synchronized neurons is useful in understanding spike-time correlations observed in many areas of the brain.
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Affiliation(s)
- Rupesh Kumar
- School of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi 110067, India
| | - Shakir Bilal
- Department of Physics and Astrophysics, University of Delhi, Delhi 110 007, India
| | - Ram Ramaswamy
- School of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi 110067, India
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18
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A modeling approach on why simple central pattern generators are built of irregular neurons. PLoS One 2015; 10:e0120314. [PMID: 25799556 PMCID: PMC4370567 DOI: 10.1371/journal.pone.0120314] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2014] [Accepted: 12/15/2014] [Indexed: 11/25/2022] Open
Abstract
The crustacean pyloric Central Pattern Generator (CPG) is a nervous circuit that endogenously provides periodic motor patterns. Even after about 40 years of intensive studies, the rhythm genesis is still not rigorously understood in this CPG, mainly because it is made of neurons with irregular intrinsic activity. Using mathematical models we addressed the question of using a network of irregularly behaving elements to generate periodic oscillations, and we show some advantages of using non-periodic neurons with intrinsic behavior in the transition from bursting to tonic spiking (as found in biological pyloric CPGs) as building components. We studied two- and three-neuron model CPGs built either with Hindmarsh-Rose or with conductance-based Hodgkin-Huxley-like model neurons. By changing a model’s parameter we could span the neuron’s intrinsic dynamical behavior from slow periodic bursting to fast tonic spiking, passing through a transition where irregular bursting was observed. Two-neuron CPG, half center oscillator (HCO), was obtained for each intrinsic behavior of the neurons by coupling them with mutual symmetric synaptic inhibition. Most of these HCOs presented regular antiphasic bursting activity and the changes of the bursting frequencies was studied as a function of the inhibitory synaptic strength. Among all HCOs, those made of intrinsic irregular neurons presented a wider burst frequency range while keeping a reliable regular oscillatory (bursting) behavior. HCOs of periodic neurons tended to be either hard to change their behavior with synaptic strength variations (slow periodic burster neurons) or unable to perform a physiologically meaningful rhythm (fast tonic spiking neurons). Moreover, 3-neuron CPGs with connectivity and output similar to those of the pyloric CPG presented the same results.
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19
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Kim YB. A CMOS low power biohybrid lamprey robot controller design. 2014 INTERNATIONAL SOC DESIGN CONFERENCE (ISOCC) 2014. [DOI: 10.1109/isocc.2014.7087560] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
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20
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Olde Scheper TV, Mansvelder HD, van Ooyen A. Short term depression unmasks the ghost frequency. PLoS One 2012; 7:e50189. [PMID: 23227159 PMCID: PMC3515566 DOI: 10.1371/journal.pone.0050189] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2012] [Accepted: 10/19/2012] [Indexed: 11/19/2022] Open
Abstract
Short Term Plasticity (STP) has been shown to exist extensively in synapses throughout the brain. Its function is more or less clear in the sense that it alters the probability of synaptic transmission at short time scales. However, it is still unclear what effect STP has on the dynamics of neural networks. We show, using a novel dynamic STP model, that Short Term Depression (STD) can affect the phase of frequency coded input such that small networks can perform temporal signal summation and determination with high accuracy. We show that this property of STD can readily solve the problem of the ghost frequency, the perceived pitch of a harmonic complex in absence of the base frequency. Additionally, we demonstrate that this property can explain dynamics in larger networks. By means of two models, one of chopper neurons in the Ventral Cochlear Nucleus and one of a cortical microcircuit with inhibitory Martinotti neurons, it is shown that the dynamics in these microcircuits can reliably be reproduced using STP. Our model of STP gives important insights into the potential roles of STP in self-regulation of cortical activity and long-range afferent input in neuronal microcircuits.
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Affiliation(s)
- Tjeerd V Olde Scheper
- Department of Integrative Neurophysiology, Center for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
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21
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Liang X, Zhao L. Phase-disorder-induced firing activity in excitable neuronal networks with attractive and repulsive coupling. Neural Netw 2012; 35:40-5. [PMID: 22954477 DOI: 10.1016/j.neunet.2012.08.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2012] [Revised: 08/07/2012] [Accepted: 08/13/2012] [Indexed: 11/25/2022]
Abstract
It has been revealed that the network of excitable neurons via attractive coupling can generate spikes under stimuli of subthreshold signals with disordered phases. In this paper, we explore the firing activity induced by phase disorder in excitable neuronal networks consisting of both attractive and repulsive coupling. By increasing the fraction of repulsive coupling, we find that, in the weak coupling strength case, the firing threshold of phase disorder is increased and the system response to subthreshold signals is decreased, indicating that the effect of inducing neuron firing by phase disorder is weakened with repulsive coupling. Interestingly, in the large coupling strength case, we see an opposite situation, where the coupled neurons show a rather large response to the subthreshold signals even with small phase disorder. The latter case implies that the effect of phase disorder is enhanced by repulsive coupling. A system of two-coupled excitable neurons is used to explain the role of repulsive coupling on phase-disorder-induced firing activity.
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Affiliation(s)
- Xiaoming Liang
- Institute of Mathematics and Computer Science, University of São Paulo, São Carlos, SP, Brazil.
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22
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Ando H, Suetani H, Kurths J, Aihara K. Chaotic phase synchronization in bursting-neuron models driven by a weak periodic force. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012; 86:016205. [PMID: 23005505 DOI: 10.1103/physreve.86.016205] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2011] [Revised: 05/11/2012] [Indexed: 06/01/2023]
Abstract
We investigate the entrainment of a neuron model exhibiting a chaotic spiking-bursting behavior in response to a weak periodic force. This model exhibits two types of oscillations with different characteristic time scales, namely, long and short time scales. Several types of phase synchronization are observed, such as 1:1 phase locking between a single spike and one period of the force and 1:l phase locking between the period of slow oscillation underlying bursts and l periods of the force. Moreover, spiking-bursting oscillations with chaotic firing patterns can be synchronized with the periodic force. Such a type of phase synchronization is detected from the position of a set of points on a unit circle, which is determined by the phase of the periodic force at each spiking time. We show that this detection method is effective for a system with multiple time scales. Owing to the existence of both the short and the long time scales, two characteristic phenomena are found around the transition point to chaotic phase synchronization. One phenomenon shows that the average time interval between successive phase slips exhibits a power-law scaling against the driving force strength and that the scaling exponent has an unsmooth dependence on the changes in the driving force strength. The other phenomenon shows that Kuramoto's order parameter before the transition exhibits stepwise behavior as a function of the driving force strength, contrary to the smooth transition in a model with a single time scale.
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Affiliation(s)
- Hiroyasu Ando
- RIKEN Brain Science Institute, 2-1 Hirosawa, Wako-shi, Saitama 351-0198, Japan
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23
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Design of a chaotic neural network for training and retrieval of grayscale and binary patterns. Neurocomputing 2011. [DOI: 10.1016/j.neucom.2011.03.037] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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24
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Ayers J, Rulkov N, Knudsen D, Kim YB, Volkovskii A, Selverston A. Controlling underwater robots with electronic nervous systems. Appl Bionics Biomech 2010. [DOI: 10.1080/11762320903244843] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022] Open
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25
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Emergent pitch perception using short term plasticity. BMC Neurosci 2009. [DOI: 10.1186/1471-2202-10-s1-p197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
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26
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Energy efficiency of information transmission by electrically coupled neurons. Biosystems 2009; 97:60-71. [DOI: 10.1016/j.biosystems.2009.04.004] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2008] [Revised: 02/16/2009] [Accepted: 04/20/2009] [Indexed: 11/18/2022]
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27
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Schöll E, Hiller G, Hövel P, Dahlem MA. Time-delayed feedback in neurosystems. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2009; 367:1079-96. [PMID: 19218152 DOI: 10.1098/rsta.2008.0258] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
The influence of time delay in systems of two coupled excitable neurons is studied in the framework of the FitzHugh-Nagumo model. A time delay can occur in the coupling between neurons or in a self-feedback loop. The stochastic synchronization of instantaneously coupled neurons under the influence of white noise can be deliberately controlled by local time-delayed feedback. By appropriate choice of the delay time, synchronization can be either enhanced or suppressed. In delay-coupled neurons, antiphase oscillations can be induced for sufficiently large delay and coupling strength. The additional application of time-delayed self-feedback leads to complex scenarios of synchronized in-phase or antiphase oscillations, bursting patterns or amplitude death.
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Affiliation(s)
- Eckehard Schöll
- Institut für Theoretische Physik, Technische Universität Berlin, Hardenbergstrasse 36, 10623 Berlin, Germany.
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28
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Time-Delayed Feedback Control: From Simple Models to Lasers and Neural Systems. UNDERSTANDING COMPLEX SYSTEMS 2009. [DOI: 10.1007/978-3-642-02329-3_4] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]
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29
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Erichsen R, Brunnet LG. Multistability in networks of Hindmarsh-Rose neurons. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2008; 78:061917. [PMID: 19256878 DOI: 10.1103/physreve.78.061917] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/02/2008] [Revised: 09/30/2008] [Indexed: 05/27/2023]
Abstract
We investigate the dynamical states of a two-dimensional network of Hindmarsh-Rose spiking neurons, in the vicinity of the current threshold where the single neuron becomes active. Each neuron is electrically coupled with neurons in its close neighborhood. The existence of multistable synchronization states is established and discussed. We also show that, provided adequate initial conditions, the collective behavior is able to keep the network in activity, even for current values far below the activity threshold of the single neuron. A phase diagram of the different network states is presented for a large interval of the coupling-current parameter space.
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Affiliation(s)
- R Erichsen
- Instituto de Física, Universidade Federal do Rio Grande do Sul, Caixa Postal 15051, 91501-970 Porto Alegre, RS, Brazil.
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30
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Zhang J, Yuan Z, Wang J, Zhou T. Interacting stochastic oscillators. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2008; 77:021101. [PMID: 18351981 DOI: 10.1103/physreve.77.021101] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2007] [Revised: 12/06/2007] [Indexed: 05/26/2023]
Abstract
Stochastic coherence (SC) and self-induced stochastic resonance (SISR) are two distinct mechanisms of noise-induced coherent motion. For interacting SC and SISR oscillators, we find that whether or not phase synchronization is achieved depends sensitively on the coupling strength and noise intensities. Specifically, in the case of weak coupling, individual oscillators are insensitive to each other, whereas in the case of strong coupling, one fixed oscillator with optimal coherence can be entrained to the other, adjustable oscillator (i.e., its noise intensity is tunable), achieving phase-locking synchronization, as long as the tunable noise intensity is not beyond a threshold; such synchronization is lost otherwise. For an array lattice of SISR oscillators, except for coupling-enhanced coherence similar to that found in the case of coupled SC oscillators, there is an optimal network topology degree (i.e., number of coupled nodes), such that coherence and synchronization are optimally achieved, implying that the system-size resonance found in an ensemble of noise-driven bistable systems can occur in coupled SISR oscillators.
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Affiliation(s)
- Jiajun Zhang
- School of Mathematics and Computational Science, Sun Yat-Sen University, Guangzhou, China
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31
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Lee YJ, Lee J, Kim KK, Kim YB, Ayers J. Low power CMOS electronic central pattern generator design for a biomimetic underwater robot. Neurocomputing 2007. [DOI: 10.1016/j.neucom.2006.12.013] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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32
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Sitt JD, Aliaga J. Versatile biologically inspired electronic neuron. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2007; 76:051919. [PMID: 18233699 DOI: 10.1103/physreve.76.051919] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2006] [Revised: 09/18/2007] [Indexed: 05/25/2023]
Abstract
We present a biologically inspired electronic neuron based on a conductance model. The channels are constructed using linearly voltage controlled field effect transistors. A two channel and a three channel circuit is developed. The dynamical behavior of this system is studied, showing for the two channel circuit either class-I or class-II excitability and for the three channel circuit bursting and spike frequency adaptation. Voltage-clamp-type measurements, similar to the ones frequently used in neuroscience, are employed in order to determine the conductance characteristics of the electronic channels. We develop an empirical model based on these measurements that reproduces the different dynamical behaviors of the electronic neuron. We found that post-inhibitory rebound is present in the two channel circuit. Reliability and precision of spike timing is induced in the three channel circuit by injecting noise in the control variable of the slow channel that provides a negative feedback. The circuit is appropriate for the design of large scale electronic neural devices that can be used in mixed electronic-biological systems.
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Affiliation(s)
- Jacobo D Sitt
- Departamento de Física, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pabellón I, (1428) Buenos Aires, Argentina.
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33
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Stiesberg GR, Reyes MB, Varona P, Pinto RD, Huerta R. Connection topology selection in central pattern generators by maximizing the gain of information. Neural Comput 2007; 19:974-93. [PMID: 17348770 DOI: 10.1162/neco.2007.19.4.974] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
A study of a general central pattern generator (CPG) is carried out by means of a measure of the gain of information between the number of available topology configurations and the output rhythmic activity. The neurons of the CPG are chaotic Hindmarsh-Rose models that cooperate dynamically to generate either chaotic or regular spatiotemporal patterns. These model neurons are implemented by computer simulations and electronic circuits. Out of a random pool of input configurations, a small subset of them maximizes the gain of information. Two important characteristics of this subset are emphasized: (1) the most regular output activities are chosen, and (2) none of the selected input configurations are networks with open topology. These two principles are observed in living CPGs as well as in model CPGs that are the most efficient in controlling mechanical tasks, and they are evidence that the information-theoretical analysis can be an invaluable tool in searching for general properties of CPGs.
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Affiliation(s)
- Gregory R Stiesberg
- Institute for Nonlinear Science, University of California San Diego, La Jolla, CA 92093-0402, USA.
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34
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Pereira T, Baptista MS, Kurths J. General framework for phase synchronization through localized sets. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2007; 75:026216. [PMID: 17358414 DOI: 10.1103/physreve.75.026216] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2006] [Indexed: 05/14/2023]
Abstract
We present an approach which enables one to identify phase synchronization in coupled chaotic oscillators without having to explicitly measure the phase. We show that if one defines a typical event in one oscillator and then observes another one whenever this event occurs, these observations give rise to a localized set. Our result provides a general and easy way to identify PS, which can also be used to oscillators that possess multiple time scales. We illustrate our approach in networks of chemically coupled neurons. We show that clusters of phase synchronous neurons may emerge before the onset of phase synchronization in the whole network, producing a suitable environment for information exchanging. Furthermore, we show the relation between the localized sets and the amount of information that coupled chaotic oscillator can exchange.
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Affiliation(s)
- T Pereira
- Nonlinear Dynamics, Institute of Physics, University of Potsdam, D-14415, Potsdam, Germany
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35
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Ayers J, Witting J. Biomimetic approaches to the control of underwater walking machines. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2007; 365:273-95. [PMID: 17148060 DOI: 10.1098/rsta.2006.1910] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
We have developed a biomimetic robot based on the American lobster. The robot is designed to achieve the performance advantages of the animal model by adopting biomechanical features and neurobiological control principles. Three types of controllers are described. The first is a state machine based on the connectivity and dynamics of the lobster central pattern generator (CPG). The state machine controls myomorphic actuators based on shape memory alloys (SMAs) and responds to environmental perturbation through sensors that employ a labelled-line code. The controller supports a library of action patterns and exteroceptive reflexes to mediate tactile navigation, obstacle negotiation and adaptation to surge. We are extending this controller to neuronal network-based models. A second type of leg CPG is based on synaptic networks of electronic neurons and has been adapted to control the SMA actuated leg. A brain is being developed using layered reflexes based on discrete time map-based neurons.
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Affiliation(s)
- Joseph Ayers
- Department of Biology and Marine Science Centre, Northeastern University, East Point, Nahant, MA 01908, USA.
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36
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Erichsen R, Mainieri MS, Brunnet LG. Periodicity and chaos in electrically coupled Hindmarsh-Rose neurons. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2006; 74:061906. [PMID: 17280095 DOI: 10.1103/physreve.74.061906] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2005] [Revised: 11/01/2006] [Indexed: 05/13/2023]
Abstract
The Hindmarsh-Rose (HR) system of equations is a model that captures the essential of the spiking activity of biological neurons. In this work we present an exploratory numerical study of the time activities of two HR neurons interacting through electrical synapses. The knowledge of this simple system is a first step towards the understanding of the cooperative behavior of large neural assemblies. Several periodic and chaotic attractors where identified, as the coupling strength is increased from zero until the perfect synchronization regime. In addition to the known phase locking synchronization at weak coupling, electrical synapses also allow for both in-phase and antiphase synchronization from moderate to strong coupling. A regime where the system changes apparently randomly between in-phase and antiphase locking evolves to a bistability regime, where both in-phase and antiphase periodic attractors are locally stable. At the strong coupling regime in-phase chaotic evolution dominates, but windows with complex periodic behavior are also present.
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Affiliation(s)
- R Erichsen
- Instituto de Física, Universidade Federal do Rio Grande do Sul, Caixa Postal 15051, 91501-970 Porto Alegre, RS, Brazil.
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37
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Hauschildt B, Janson NB, Balanov A, Schöll E. Noise-induced cooperative dynamics and its control in coupled neuron models. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2006; 74:051906. [PMID: 17279938 DOI: 10.1103/physreve.74.051906] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2006] [Revised: 09/13/2006] [Indexed: 05/13/2023]
Abstract
We investigate feedback control of the cooperative dynamics of two coupled neural oscillators that is induced merely by external noise. The interacting neurons are modeled as FitzHugh-Nagumo systems with parameter values at which no autonomous oscillations occur, and each unit is forced by its own source of random fluctuations. Application of delayed feedback to only one of two subsystems is shown to be able to change coherence and time scales of noise-induced oscillations either in the given subsystem, or globally. It is also able to induce or to suppress stochastic synchronization under certain conditions.
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Affiliation(s)
- B Hauschildt
- Institut für Theoretische Physik, Technische Universität Berlin, Hardenbergstrasse 36, D-10623 Berlin, Germany.
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38
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Ebenbauer C, Allgöwer F. Analysis and design of polynomial control systems using dissipation inequalities and sum of squares. Comput Chem Eng 2006. [DOI: 10.1016/j.compchemeng.2006.05.014] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Binczak S, Jacquir S, Bilbault JM, Kazantsev VB, Nekorkin VI. Experimental study of electrical FitzHugh–Nagumo neurons with modified excitability. Neural Netw 2006; 19:684-93. [PMID: 16182512 DOI: 10.1016/j.neunet.2005.07.011] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We present an electronical circuit modelling a FitzHugh-Nagumo neuron with a modified excitability. To characterize this basic cell, the bifurcation curves between stability with excitation threshold, bistability and oscillations are investigated. An electrical circuit is then proposed to realize a unidirectional coupling between two cells, mimicking an inter-neuron synaptic coupling. In such a master-slave configuration, we show experimentally how the coupling strength controls the dynamics of the slave neuron, leading to frequency locking, chaotic behavior and synchronization. These phenomena are then studied by phase map analysis. The architecture of a possible neural network is described introducing different kinds of coupling between neurons.
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Affiliation(s)
- Stéphane Binczak
- LE2I, CNRS UMR 5158, Aile des Sciences de l'Ingénieur, Université de Bourgogne, BP, 47870 Dijon Cedex, France.
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Fukuyama T, Kozakov R, Testrich H, Wilke C. Spatiotemporal synchronization of coupled oscillators in a laboratory plasma. PHYSICAL REVIEW LETTERS 2006; 96:024101. [PMID: 16486580 DOI: 10.1103/physrevlett.96.024101] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2005] [Indexed: 05/06/2023]
Abstract
The spatiotemporal synchronization between two plasma instabilities of autonomous glow discharge tubes is observed experimentally. For this purpose, two tubes are placed separately and two chaotic waves interact with each other through a coupler. When the coupling strength is changed, the coupled oscillators exhibit synchronization in time and space. This is the first experimental evidence of spatiotemporal synchronization by mutual chaotic wave interaction in plasma.
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Affiliation(s)
- T Fukuyama
- Faculty of Education, Ehime University, Matsuyama, Ehime 790-8577, Japan
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Denker M, Szücs A, Pinto RD, Abarbanel HDI, Selverston AI. A Network of Electronic Neural Oscillators Reproduces the Dynamics of the Periodically Forced Pyloric Pacemaker Group. IEEE Trans Biomed Eng 2005; 52:792-8. [PMID: 15887528 DOI: 10.1109/tbme.2005.844272] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Low-dimensional oscillators are a valuable model for the neuronal activity of isolated neurons. When coupled, the self-sustained oscillations of individual free oscillators are replaced by a collective network dynamics. Here, dynamical features of such a network, consisting of three electronic implementations of the Hindmarsh-Rose mathematical model of bursting neurons, are compared to those of a biological neural motor system, specifically the pyloric CPG of the crustacean stomatogastric nervous system. We demonstrate that the network of electronic neurons exhibits realistic synchronized bursting behavior comparable to the biological system. Dynamical properties were analyzed by injecting sinusoidal currents into one of the oscillators. The temporal bursting structure of the electronic neurons in response to periodic stimulation is shown to bear a remarkable resemblance to that observed in the corresponding biological network. These findings provide strong evidence that coupled nonlinear oscillators realistically reproduce the network dynamics experimentally observed in assemblies of several neurons.
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Affiliation(s)
- Michael Denker
- Institut f Biologie, AG Neurobiologie, Freie Universität, 14195 Berlin, Germany.
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Carelli PV, Reyes MB, Sartorelli JC, Pinto RD. Whole cell stochastic model reproduces the irregularities found in the membrane potential of bursting neurons. J Neurophysiol 2005; 94:1169-79. [PMID: 15800078 DOI: 10.1152/jn.00070.2005] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Irregular intrinsic behavior of neurons seems ubiquitous in the nervous system. Even in circuits specialized to provide periodic and reliable patterns to control the repetitive activity of muscles, such as the pyloric central pattern generator (CPG) of the crustacean stomatogastric ganglion (STG), many bursting motor neurons present irregular activity when deprived from synaptic inputs. Moreover, many authors attribute to these irregularities the role of providing flexibility and adaptation capabilities to oscillatory neural networks such as CPGs. These irregular behaviors, related to nonlinear and chaotic properties of the cells, pose serious challenges to developing deterministic Hodgkin-Huxley-type (HH-type) conductance models. Only a few deterministic HH-type models based on experimental conductance values were able to show such nonlinear properties, but most of these models are based on slow oscillatory dynamics of the cytosolic calcium concentration that were never found experimentally in STG neurons. Based on an up-to-date single-compartment deterministic HH-type model of a STG neuron, we developed a stochastic HH-type model based on the microscopic Markovian states that an ion channel can achieve. We used tools from nonlinear analysis to show that the stochastic model is able to express the same kind of irregularities, sensitivity to initial conditions, and low dimensional dynamics found in the neurons isolated from the STG. Without including any nonrealistic dynamics in our whole cell stochastic model, we show that the nontrivial dynamics of the membrane potential naturally emerge from the interplay between the microscopic probabilistic character of the ion channels and the nonlinear interactions among these elements. Moreover, the experimental irregular behavior is reproduced by the stochastic model for the same parameters for which the membrane potential of the original deterministic model exhibits periodic oscillations.
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Affiliation(s)
- Pedro V Carelli
- Laboratório de Fenômenos Não-Lineares, Instituto de Física da Universidade de São Paulo, Sao Paulo, Brazil .
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44
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Oprisan SA, Prinz AA, Canavier CC. Phase resetting and phase locking in hybrid circuits of one model and one biological neuron. Biophys J 2005; 87:2283-98. [PMID: 15454430 PMCID: PMC1304653 DOI: 10.1529/biophysj.104.046193] [Citation(s) in RCA: 75] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
To determine why elements of central pattern generators phase lock in a particular pattern under some conditions but not others, we tested a theoretical pattern prediction method. The method is based on the tabulated open loop pulsatile interactions of bursting neurons on a cycle-by-cycle basis and was tested in closed loop hybrid circuits composed of one bursting biological neuron and one bursting model neuron coupled using the dynamic clamp. A total of 164 hybrid networks were formed by varying the synaptic conductances. The prediction of 1:1 phase locking agreed qualitatively with the experimental observations, except in three hybrid circuits in which 1:1 locking was predicted but not observed. Correct predictions sometimes required consideration of the second order phase resetting, which measures the change in the timing of the second burst after the perturbation. The method was robust to offsets between the initiation of bursting in the presynaptic neuron and the activation of the synaptic coupling with the postsynaptic neuron. The quantitative accuracy of the predictions fell within the variability (10%) in the experimentally observed intrinsic period and phase resetting curve (PRC), despite changes in the burst duration of the neurons between open and closed loop conditions.
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Affiliation(s)
- S A Oprisan
- Department of Psychology, University of New Orleans, New Orleans, Louisiana 70148, USA.
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Realistic Stimulation Through Advanced Dynamic-Clamp Protocols. LECTURE NOTES IN COMPUTER SCIENCE 2005. [DOI: 10.1007/11499220_10] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]
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Bondarenko VE, Cymbalyuk GS, Patel G, Deweerth SP, Calabrese RL. Bifurcation of synchronous oscillations into torus in a system of two reciprocally inhibitory silicon neurons: experimental observation and modeling. CHAOS (WOODBURY, N.Y.) 2004; 14:995-1003. [PMID: 15568913 DOI: 10.1063/1.1795471] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Oscillatory activity in the central nervous system is associated with various functions, like motor control, memory formation, binding, and attention. Quasiperiodic oscillations are rarely discussed in the neurophysiological literature yet they may play a role in the nervous system both during normal function and disease. Here we use a physical system and a model to explore scenarios for how quasiperiodic oscillations might arise in neuronal networks. An oscillatory system of two mutually inhibitory neuronal units is a ubiquitous network module found in nervous systems and is called a half-center oscillator. Previously we created a half-center oscillator of two identical oscillatory silicon (analog Very Large Scale Integration) neurons and developed a mathematical model describing its dynamics. In the mathematical model, we have shown that an in-phase limit cycle becomes unstable through a subcritical torus bifurcation. However, the existence of this torus bifurcation in experimental silicon two-neuron system was not rigorously demonstrated or investigated. Here we demonstrate the torus predicted by the model for the silicon implementation of a half-center oscillator using complex time series analysis, including bifurcation diagrams, mapping techniques, correlation functions, amplitude spectra, and correlation dimensions, and we investigate how the properties of the quasiperiodic oscillations depend on the strengths of coupling between the silicon neurons. The potential advantages and disadvantages of quasiperiodic oscillations (torus) for biological neural systems and artificial neural networks are discussed.
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Affiliation(s)
- Vladimir E Bondarenko
- Department of Physiology and Biophysics, The State University of New York at Buffalo, 124 Sherman Hall, Buffalo, New York 14214, USA.
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Courbage M, Kazantsev VB, Nekorkin VI, Senneret M. Emergence of chaotic attractor and anti-synchronization for two coupled monostable neurons. CHAOS (WOODBURY, N.Y.) 2004; 14:1148-1156. [PMID: 15568928 DOI: 10.1063/1.1821691] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
The dynamics of two coupled piece-wise linear one-dimensional monostable maps is investigated. The single map is associated with Poincare section of the FitzHugh-Nagumo neuron model. It is found that a diffusive coupling leads to the appearance of chaotic attractor. The attractor exists in an invariant region of phase space bounded by the manifolds of the saddle fixed point and the saddle periodic point. The oscillations from the chaotic attractor have a spike-burst shape with anti-phase synchronized spiking.
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Affiliation(s)
- M Courbage
- Université Paris 7-Denis Diderot/L.P.T.M.C., Fédération Matière et systèmes Complexes, 4 Place Jussieu, 75251 Paris Cedex 05, France.
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Ivanchenko MV, Osipov GV, Shalfeev VD, Kurths J. Phase synchronization in ensembles of bursting oscillators. PHYSICAL REVIEW LETTERS 2004; 93:134101. [PMID: 15524723 DOI: 10.1103/physrevlett.93.134101] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2004] [Indexed: 05/24/2023]
Abstract
We study the effects of mutual and external chaotic phase synchronization in ensembles of bursting oscillators. These oscillators (used for modeling neuronal dynamics) are essentially multiple time scale systems. We show that a transition to mutual phase synchronization takes place on the bursting time scale of globally coupled oscillators, while on the spiking time scale, they behave asynchronously. We also demonstrate the effect of the onset of external chaotic phase synchronization of the bursting behavior in the studied ensemble by a periodic driving applied to one arbitrarily taken neuron. We also propose an explanation of the mechanism behind this effect. We infer that the demonstrated phenomenon can be used efficiently for controlling bursting activity in neural ensembles.
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Affiliation(s)
- Mikhail V Ivanchenko
- Department of Radiophysics, Nizhny Novgorod University, 23, Gagarin Avenue, 603600 Nizhny Novgorod, Russia
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Abstract
Hybrid networks in which living neurons interact with digital or analog model neurons are providing insights into the role of neural and synaptic properties in shaping neural network activity.
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Affiliation(s)
- Astrid A Prinz
- Volen Center and Biology Department, Brandeis University, MS 013, 415 South Street, Waltham, Massachusetts 02454, USA
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50
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Sato YD, Shiino M. Spiking neuron models with excitatory or inhibitory synaptic couplings and synchronization phenomena. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2002; 66:041903. [PMID: 12443231 DOI: 10.1103/physreve.66.041903] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2002] [Indexed: 05/24/2023]
Abstract
We investigate synchronization phenomena in a system of two piecewise-linear-type model neurons with excitatory or inhibitory synaptic couplings. Employing the phase plane analysis and a singular perturbation approach to split the dynamics into slow and fast ones, we construct analytically the Poincaré map of the solution to the piecewise-linear equations. We investigate conditions for the occurrence of synchronized oscillations of in phase as well as of antiphase in terms of parameters representing the strength of the synaptic coupling and the decaying relaxation rate of the synaptic dynamics. We present the results of numerical simulations that agree with our theoretical ones.
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Affiliation(s)
- Yasuomi D Sato
- Department of Applied Physics, Faculty of Science, Tokyo Institute of Technology, 2-12-1 Oh-okayama, Meguro-ku, Tokyo 152-0033, Japan
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