Sea-surface temperature from coral skeletal strontium/calcium ratios

Anion elements incorporation into corals skeletons: Experimental approach for biomineralization and paleo-proxies

The elemental composition of coral skeletons provides important information for palaeoceanographic reconstructions and coral biomineralization. Partition of anions and their stable isotopes in coral skeleton enables the reconstruction of past seawater carbonate chemistry, paleo-CO2, and past climates. Here, we investigated the partition of B, S, As, Br, I, and Mo into the skeletons of two corals, Acropora cervicornis and Pocillopora damicornis, as a function of calcium and carbonate concentrations.* Anion-to-calcium ratio in the corals (An/CaCoral) were correlated with the equivalent ratios in the culturing seawater (An/CO32-SW). Negative intercepts of these relationships suggest a higher CO32- concentration in the coral extracellular calcifying fluid (ECF) relative to seawater, from which the skeleton precipitates. The enrichment factor of CO32- at the ECF was 2.5 for A. cervicornis and 1.9 for P. damicornis, consistent with their relative calcification rates. The CO32-ECF concentrations thus calculated are similar to those proposed by previous studies based on B/Ca coupled with δ11B, as well as by direct measurements using microsensors and fluorescent dyes. Rayleigh fractionation modeling demonstrates a uniform Ca utilization at various CaSW concentrations, providing further evidence that coral calcification occurs directly from a semiclosed seawater reservoir as reported previously. The partition coefficients reported in this study for B, S, As, Br, I, and Mo open up wide possibilities for past ocean chemistry reconstructions based on Br having long residence time (~160 Ma) in the ocean. Other elements like S, Mo, B, as well as pCO2 may also be calculated based on these elements in fossil coral.

Coral skeletons reveal the impacts of oil pollution on seawater chemistry in the northern South China Sea

Oil pollution can release trace metals (TMs) with cumulative toxicity into seawater, harming marine ecosystems in the long term. However, the lack of studies has inhibited our understanding of the effects and mechanisms of oil pollution on TMs in seawater. Hence, we investigated the 10-year monthly variation of TMs in Porites coral skeletons from the northern South China Sea (SCS), complemented by spatial distribution of TMs in seawater, sediments and characterization of TMs in fuel oil. The results of principal component-multivariate linear regression showed that the total contribution of oil pollution as a source to TMs in surface seawater was 77.2%, where the residence time of TMs (Ni, V, Cr, Co, Cu, Mn, Fe, and Mo) released from oil spills in surface seawater was approximately 1.4 months. Due to the geochemical nature of the metals, their seasonal variations are controlled by tropical cyclones (Ni, V, Cr, Co, Cu, Mn, Fe, and Mo), winter monsoons (Pb, Cd, Ba, and Zn) and sea surface temperature (Sr). This study shows that coral skeletons can be used as a new tool to study marine oil pollution. This provides valuable reference data for accurately identifying and quantifying the effects of oil pollution on TMs in seawater from a spatial and temporal perspective.

Optimising a method for aragonite precipitation in simulated biogenic calcification media

Resolving how factors such as temperature, pH, biomolecules and mineral growth rate influence the geochemistry and structure of biogenic CaCO3, is essential to the effective development of palaeoproxies. Here we optimise a method to precipitate the CaCO3 polymorph aragonite from seawater, under tightly controlled conditions that simulate the saturation state (Ω) of coral calcification fluids. We then use the method to explore the influence of aspartic acid (one of the most abundant amino acids in coral skeletons) on aragonite structure and morphology. Using ≥200 mg of aragonite seed (surface area 0.84 m2), to provide a surface for mineral growth, in a 330 mL seawater volume, generates reproducible estimates of precipitation rate over Ωaragonite = 6.9-19.2. However, unseeded precipitations are highly variable in duration and do not provide consistent estimates of precipitation rate. Low concentrations of aspartic acid (1-10 μM) promote aragonite formation, but high concentrations (≥ 1 mM) inhibit precipitation. The Raman spectra of aragonite precipitated in vitro can be separated from the signature of the starting seed by ensuring that at least 60% of the analysed aragonite is precipitated in vitro (equivalent to using a seed of 200 mg and precipitating 300 mg aragonite in vitro). Aspartic acid concentrations ≥ 1mM caused a significant increase in the full width half maxima of the Raman aragonite v1 peak, reflective of increased rotational disorder in the aragonite structure. Changes in the organic content of coral skeletons can drive variations in the FWHM of the Raman aragonite ν1 peak, and if not accounted for, may confuse the interpretation of calcification fluid saturation state from this parameter.

Plutonium isotopes in the North Western Pacific sediments coupled with radiocarbon in corals recording precise timing of the Anthropocene

Plutonium (Pu) has been used as a mid-twentieth century time-marker in various geological archives as a result of atmospheric nuclear tests mainly conducted in 1950s. Advancement of analytical techniques allows us to measure ²³⁹Pu and ²⁴⁰Pu more accurately and can thereby reconstruct the Pacific Pu signal that originated from the former Pacific Proving Grounds (PPG) in the Marshall Islands. Here, we propose a novel method that couples annual banded reef building corals and nearshore anoxic marine sediments to provide a marker to precisely determine the start of the nuclear era which is known as a part of the Anthropocene. We demonstrate the efficacy of the methods using sediment obtained from Beppu Bay, Japan, and a coral from Ishigaki Island, Japan. The sedimentary records show a clear Pu increase from 1950, peaking during the 1960s, and then showing a sharp decline during the 1970s. However, a constantly higher isotope ratio between ²³⁹Pu and ²⁴⁰Pu suggest an additional contribution other than global fallout via ocean currents. Furthermore, single elevations in ²⁴⁰Pu/²³⁹Pu provide supportive evidence of close-in-fallout similar to previous studies. Coral skeletal radiocarbon displays a clear timing with the signatures supporting the reliability of the Beppu Bay sediments as archives and demonstrates the strength of this method to capture potential Anthropocene signatures.

Whole-Genome Sequencing Highlights Conservative Genomic Strategies of a Stress-Tolerant, Long-Lived Scleractinian Coral, Porites australiensis Vaughan, 1918

Massive corals of the genus Porites, common, keystone reef builders in the Indo-Pacific Ocean, are distinguished by their relative stress tolerance and longevity. In order to identify genetic bases of these attributes, we sequenced the complete genome of a massive coral, Porites australiensis. We developed a genome assembly and gene models of comparable quality to those of other coral genomes. Proteome analysis identified 60 Porites skeletal matrix protein genes, all of which show significant similarities to genes from other corals and even to those from a sea anemone, which has no skeleton. Nonetheless, 30% of its skeletal matrix proteins were unique to Porites and were not present in the skeletons of other corals. Comparative genomic analyses showed that genes widely conserved among other organisms are selectively expanded in Porites. Specifically, comparisons of transcriptomic responses of P. australiensis and Acropora digitifera, a stress-sensitive coral, reveal significant differences in regard to genes that respond to increased water temperature, and some of the genes expanded exclusively in Porites may account for the different thermal tolerances of these corals. Taken together, widely shared genes may have given rise to unique biological characteristics of Porites, massive skeletons and stress tolerance.

Assessing multiproxy approaches (Sr/Ca, U/Ca, Li/Mg, and B/Mg) to reconstruct sea surface temperature from coral skeletons throughout the Great Barrier Reef

Due to the increasing concerns of global warming and short instrumental records of sea surface temperature (SST), coral-based proxies, such as δ¹⁸O, Sr/Ca, U/Ca, and Li/Mg have been developed and applied to reconstruct SST in paleoclimate studies. However, these proxies are not universally applicable in different environments, because they are affected by coral physiology and various environmental factors. In this study, seven long-lived Porites corals were collected from the southern sector of the Great Barrier Reef (GBR) off the coast of Gladstone and the central sector of the GBR within the Whitsunday Islands in 2017 and 2018. Coral sites were selected to cover a wide latitudinal range with different annual temperature ranges. Century-long geochemical records (Li/Ca, B/Ca, Mg/Ca, Sr/Ca, and U/Ca) were generated using laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) at weekly resolution. This study has tested the robustness of two traditional temperature proxies (Sr/Ca and U/Ca), a recently developed temperature proxy (Li/Mg), and an additional potential temperature proxy (B/Mg). U/Ca was found to be the most robust and stable temperature proxy for corals from the GBR over long-term timescales. Sr/Ca is a close second, however due to the lower response of Sr fractionation per 1 °C, it is more sensitive to analytical methods and less sensitive to annual SST changes than U/Ca. Li/Mg and B/Mg have clearer periodicity compared to Li/Ca and B/Ca. Both Li/Mg and B/Mg are strongly correlated with SST, which is due to the cancellation of temperature-independent commonality. Empirical calibrations established from this multi-proxy approach increase the certainty of temperature reconstruction when a single proxy does not perform well. These site- and colony-specific SST calibrations also provide an opportunity to revisit the universal multi-trace element calibration of sea surface temperatures (UMTECS) model, which does not require the knowledge of local SST for calibration.

Past climate variations recorded in needle-like aragonites correlate with organic carbon burial efficiency as revealed by lake sediments in Croatia

The drivers of organic carbon (OC) burial efficiency are still poorly understood despite their key role in reliable projections of future climate trends. Here, we provide insights on this issue by presenting a paleoclimate time series of sediments, including the OC contents, from Lake Veliko jezero, Croatia. The Sr/Ca ratios of the bulk sediment are mainly derived from the strontium (Sr) and calcium (Ca) concentrations of needle-like aragonite in Core M1-A and used as paleotemperature and paleohydrology indicators. Four major and six minor cold and dry events were detected in the interval from 8.3 to 2.6 calibrated kilo anno before present (cal ka BP). The combined assessment of Sr/Ca ratios, OC content, carbon/nitrogen (C/N) ratios, stable carbon isotope (δ13C) ratios, and modeled geochemical proxies for paleoredox conditions and aeolian input revealed that cold and dry climate states promoted anoxic conditions in the lake, thereby enhancing organic matter preservation and increasing the OC burial efficiency. Our study shows that the projected future increase in temperature might play an important role in the OC burial efficiency of meromictic lakes.

Calcium cyclic carboxylates as structural models for calcium carbonate scale inhibitors

Calcium complexes of cyclic oligocarboxylic acids have been studied as models to understand how subtle changes in molecular structure lead to significant variation in inhibition ability for calcium carbonate deposition

Millennial-Scale Climate Variability and Dinoflagellate-Cyst-Based Seasonality Changes Over the Last ~150 kyrs at "Shackleton Site" U1385

During the last glacial period, climate conditions in the North Atlantic region were determined by the alternation of relatively warm interstadials and relatively cool stadials, with superimposed rapid warming (Dansgaard-Oeschger) and cooling (Heinrich) events. So far little is known about the impact of these rapid climate shifts on the seasonal variations in sea surface temperature (SST) within the North Atlantic region. Here, we present a high-resolution seasonal SST record for the past 152 kyrs derived from Integrated Ocean Drilling Program "Shackleton" Site U1385, offshore Portugal. Assemblage counts of dinoflagellates cysts (dinocysts) in combination with a modern analog technique (MAT), and regression analyses were used for the reconstructions. We compare our records with previously published SST records from the same location obtained from the application of MAT on planktonic foraminifera. Our dinocyst-based reconstructions confirm the impression of the Greenland stadials and interstadials offshore the Portuguese margin and indicate increased seasonal contrast of temperature during the cold periods of the glacial cycle (average 9.0 °C, maximum 12.2 °C) with respect to present day (5.1 °C), due to strong winter cooling by up to 8.3 °C. Our seasonal temperature reconstructions are in line with previously published data, which showed increased seasonality due to strong winter cooling during the Younger Dryas and the Last Glacial Maximum over the European continent and North Atlantic region. In addition, we show that over longer time scales, increased seasonal contrasts of temperature remained characteristic of the colder phases of the glacial cycle.

Oman coral δ18O seawater record suggests that Western Indian Ocean upwelling uncouples from the Indian Ocean Dipole during the global-warming hiatus

The Indian Ocean Dipole (IOD) is an interannual mode of climate variability in the Indian Ocean that has intensified with 20^th century global-warming. However, instrumental data shows a global-warming hiatus between the late-1990s and 2015. It is presently not clear how the global-warming hiatus affects modes of climate variability such as the IOD, and their basin-wide ocean-atmosphere teleconnections. Here, we present a 26-year long, biweekly record of Sr/Ca and δ¹⁸O from a Porites coral drilled in the Gulf of Oman. Sea surface temperature (SST_anom) is calculated from Sr/Ca ratios, and seawater δ¹⁸O (δ¹⁸O_sw-anom) is estimated by subtracting the temperature component from coral δ¹⁸O. Our δ¹⁸O_sw-anom record reveals a significant regime shift in 1999, towards lower mean δ¹⁸O_sw values, reflecting intensified upwelling in the western Indian Ocean. Prior to the 1999 regime shift, our SST_anom and δ¹⁸O_sw-anom show a clear IOD signature, with higher values in the summer of positive-IOD years due to weakened upwelling. The IOD signature in SST_anom and δ¹⁸O_sw-anom disappears with the overall intensification of upwelling after the 1999 regime shift. The inferred increase in upwelling is likely driven by an intensified Walker circulation during the global-warming hiatus. Upwelling in the Western Indian Ocean uncouples from the IOD.

A hydrated crystalline calcium carbonate phase: Calcium carbonate hemihydrate

As one of the most abundant materials in the world, calcium carbonate, CaCO3, is the main constituent of the skeletons and shells of various marine organisms. It is used in the cement industry and plays a crucial role in the global carbon cycle and formation of sedimentary rocks. For more than a century, only three polymorphs of pure CaCO3—calcite, aragonite, and vaterite—were known to exist at ambient conditions, as well as two hydrated crystal phases, monohydrocalcite (CaCO3·1H2O) and ikaite (CaCO3·6H2O). While investigating the role of magnesium ions in crystallization pathways of amorphous calcium carbonate, we unexpectedly discovered an unknown crystalline phase, hemihydrate CaCO3·½H2O, with monoclinic structure. This discovery may have important implications in biomineralization, geology, and industrial processes based on hydration of CaCO3.

Seasonal to decadal scale influence of environmental drivers on Ba/Ca and Y/Ca in coral aragonite from the southern Great Barrier Reef

Extensive catchment modification since European settlement on the eastern coast of Australia results in poor coastal water quality, which poses a major threat for near shore coral communities in the iconic Great Barrier Reef (GBR). Long lived inshore corals have the potential to provide long-term temporal records of changing water quality both pre- and post-anthropogenic modification. However, water quality proxies require more study and validation of the robustness of coral-hosted geochemical proxies for a specific site is critical. This study investigated the long-term (1958-2010) influence of environmental drivers on high-resolution Ba/Ca and Y/Ca proxies obtained from Porites sp. coral from Great Keppel Island, southern GBR, Australia. Geochemical proxy records were influenced by environmental change on a seasonal to decadal scale. Although seasonal oscillations of Ba/Ca and Y/Ca were related to rainfall and discharge from the Fitzroy River catchment, some uncorrelated anomalous peaks were evident throughout the time series. Regardless, the behaviour of these proxies was significantly consistent over the longer time scale. Most long-term drought-breaking floods, including one that occurred in winter, resulted in significant increase in the targeted elemental ratios owing to higher terrigenous sediment flux to the near shore marine environment from a catchment with reduced groundcover. Following this intense flushing event, elemental ratios were reduced in subsequent wet periods as a result of less sediment being available for transport to coastal seawater. Ba/Ca and Y/Ca proxies can be valuable tools in reconstructing multiyear variations in terrestrial runoff and associated inshore water quality. As these proxies and their regional and local controls are better understood they will aid our understanding of how reefs have responded and may respond to changing water conditions.

Accumulation of Marcellus Formation Oil and Gas Wastewater Metals in Freshwater Mussel Shells

For several decades, high-salinity water brought to the surface during oil and gas (O&G) production has been treated and discharged to waterways under National Pollutant Discharge Elimination System (NPDES) permits. In Pennsylvania, USA, a portion of the treated O&G wastewater discharged to streams from 2008 to 2011 originated from unconventional (Marcellus) wells. We collected freshwater mussels, Elliptio dilatata and Elliptio complanata, both upstream and downstream of a NPDES-permitted facility, and for comparison, we also collected mussels from the Juniata and Delaware Rivers that have no reported O&G discharge. We observed changes in both the Sr/Ca_shell and ⁸⁷Sr/⁸⁶Sr_shell in shell samples collected downstream of the facility that corresponded to the time period of greatest Marcellus wastewater disposal (2009-2011). Importantly, the changes in Sr/Ca_shell and ⁸⁷Sr/⁸⁶Sr_shell shifted toward values characteristic of O&G wastewater produced from the Marcellus Formation. Conversely, shells collected upstream of the discharge and from waterways without treatment facilities showed lower variability and no trend in either Sr/Ca_shell or ⁸⁷Sr/⁸⁶Sr_shell with time (2008-2015). These findings suggest that (1) freshwater mussels may be used to monitor changes in water chemistry through time and help identify specific pollutant sources and (2) O&G contaminants likely bioaccumulated in areas of surface water disposal.

Biochemical characterization of the skeletal matrix of the massive coral, Porites australiensis - The saccharide moieties and their localization

To construct calcium carbonate skeletons of sophisticated architecture, scleractinian corals secrete an extracellular skeletal organic matrix (SOM) from aboral ectodermal cells. The SOM, which is composed of proteins, saccharides, and lipids, performs functions critical for skeleton formation. Even though polysaccharides constitute the major component of the SOM, its contribution to coral skeleton formation is poorly understood. To this end, we analyzed the SOM of the massive colonial coral, Porites australiensis, the skeleton of which has drawn great research interest because it records environmental conditions throughout the life of the colony. The coral skeleton was extensively cleaned, decalcified with acetic acid, and organic fractions were separated based on solubility. These fractions were analyzed using various techniques, including SDS-PAGE, FT-IR, in vitro crystallization, CHNS analysis, chromatography analysis of monosaccharide and enzyme-linked lectin assay (ELLA). We confirmed the acidic nature of SOM and the presence of sulphate, which is thought to initiate CaCO₃ crystallization. In order to analyze glycan structures, we performed ELLA on the soluble SOM for the first time and found that it exhibits strong specificity to Datura stramonium lectin (DSL). Furthermore, using biotinylated DSL with anti-biotin antibody conjugated to nanogold, in situ localization of DSL-binding polysaccharides in the P. australiensis skeleton was performed. Signals were distributed on the surfaces of fiber-like crystals of the skeleton, suggesting that polysaccharides may modulate crystal shape. Our study emphasizes the importance of sugar moieties in biomineralization of scleractinian corals.

Coral trace metal of natural and anthropogenic influences in the northern South China Sea

The composition and concentrations of trace metals in coastal seawater have changed in parallel with variations in geochemical processes, climate and anthropogenic activities. To evaluate the response of trace metals in coastal seawater to climatic changes and human disturbances, we report annual-resolution trace element data for a Porites coral core covering ~100years of continuous growth from a fringing reef in Xiaodonghai Bay in the northern South China Sea. The results suggested that the trace metal contents in the coral skeleton demonstrated decadal to interdecadal fluctuations with several large or small peaks in certain years with remarkable environmental significances. All of the trace metals in coastal surface seawater, especially Cr and Pb (related to industrial or traffic emissions), were impacted by terrestrial inputs, except for Sr and U, which were impacted by the surface seawater temperature (SST). Moreover, Mn, Ni, Fe and Co were also contributed by weapons and military supplies during wars, and Cu, Cd and Zn were further impacted by upwelling associated with their biogeochemical cycles. Ba and rare earth element (REE) in coastal surface seawater were dominated by runoff and groundwater discharge associated with precipitation. This study provided the potential for some trace metals (e.g., REE, Ba, Cu, Cd, and Zn) in coral skeletons to be used as proxies of natural (e.g., upwelling and precipitation) and anthropogenic (e.g., war and coastal construction) variability of seawater chemistry to enable the reconstruction of environmental and climatic changes through time.

Amorphous calcium carbonate particles form coral skeletons

Do corals form their skeletons by precipitation from solution or by attachment of amorphous precursor particles as observed in other minerals and biominerals? The classical model assumes precipitation in contrast with observed "vital effects," that is, deviations from elemental and isotopic compositions at thermodynamic equilibrium. Here, we show direct spectromicroscopy evidence in Stylophora pistillata corals that two amorphous precursors exist, one hydrated and one anhydrous amorphous calcium carbonate (ACC); that these are formed in the tissue as 400-nm particles; and that they attach to the surface of coral skeletons, remain amorphous for hours, and finally, crystallize into aragonite (CaCO₃). We show in both coral and synthetic aragonite spherulites that crystal growth by attachment of ACC particles is more than 100 times faster than ion-by-ion growth from solution. Fast growth provides a distinct physiological advantage to corals in the rigors of the reef, a crowded and fiercely competitive ecosystem. Corals are affected by warming-induced bleaching and postmortem dissolution, but the finding here that ACC particles are formed inside tissue may make coral skeleton formation less susceptible to ocean acidification than previously assumed. If this is how other corals form their skeletons, perhaps this is how a few corals survived past CO₂ increases, such as the Paleocene-Eocene Thermal Maximum that occurred 56 Mya.

Megapixel multi-elemental imaging by Laser-Induced Breakdown Spectroscopy, a technology with considerable potential for paleoclimate studies

Paleoclimate studies play a crucial role in understanding past and future climates and their environmental impacts. Current methodologies for performing highly sensitive elemental analysis at micrometre spatial resolutions are restricted to the use of complex and/or not easily applied techniques, such as synchrotron radiation X-ray fluorescence micro-analysis (μ-SRXRF), nano secondary ion mass spectrometry (nano-SIMS) or laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS). Moreover, the analysis of large samples (>few cm²) with any of these methods remains very challenging due to their relatively low acquisition speed (~1–10 Hz), and because they must be operated in vacuum or controlled atmosphere. In this work, we proposed an imaging methodology based on laser-induced breakdown spectroscopy, to perform fast multi-elemental scanning of large geological samples with high performance in terms of sensitivity (ppm-level), lateral resolution (up to 10 μm) and operating speed (100 Hz). This method was successfully applied to obtain the first megapixel images of large geological samples and yielded new information, not accessible using other techniques. These results open a new perspective into the use of laser spectroscopy in a variety of geochemical applications.

Coral skeletal geochemistry as a monitor of inshore water quality

Coral reefs maintain extraordinary biodiversity and provide protection from tsunamis and storm surge, but inshore coral reef health is degrading in many regions due to deteriorating water quality. Deconvolving natural and anthropogenic changes to water quality is hampered by the lack of long term, dated water quality data but such records are required for forward modelling of reef health to aid their management. Reef corals provide an excellent archive of high resolution geochemical (trace element) proxies that can span hundreds of years and potentially provide records used through the Holocene. Hence, geochemical proxies in corals hold great promise for understanding changes in ancient water quality that can inform broader oceanographic and climatic changes in a given region. This article reviews and highlights the use of coral-based trace metal archives, including metal transported from rivers to the ocean, incorporation of trace metals into coral skeletons and the current 'state of the art' in utilizing coral trace metal proxies as tools for monitoring various types of local and regional source-specific pollution (river discharge, land use changes, dredging and dumping, mining, oil spills, antifouling paints, atmospheric sources, sewage). The three most commonly used coral trace element proxies (i.e., Ba/Ca, Mn/Ca, and Y/Ca) are closely associated with river runoff in the Great Barrier Reef, but considerable uncertainty remains regarding their complex biogeochemical cycling and controlling mechanisms. However, coral-based water quality reconstructions have suffered from a lack of understanding of so-called vital effects and early marine diagenesis. The main challenge is to identify and eliminate the influence of extraneous local factors in order to allow accurate water quality reconstructions and to develop alternate proxies to monitor water pollution. Rare earth elements have great potential as they are self-referencing and reflect basic terrestrial input.

Understanding cold bias: Variable response of skeletal Sr/Ca to seawater pCO2 in acclimated massive Porites corals

Coral skeletal Sr/Ca is a palaeothermometer commonly used to produce high resolution seasonal sea surface temperature (SST) records and to investigate the amplitude and frequency of ENSO and interdecadal climate events. The proxy relationship is typically calibrated by matching seasonal SST and skeletal Sr/Ca maxima and minima in modern corals. Applying these calibrations to fossil corals assumes that the temperature sensitivity of skeletal Sr/Ca is conserved, despite substantial changes in seawater carbonate chemistry between the modern and glacial ocean. We present Sr/Ca analyses of 3 genotypes of massive Porites spp. corals (the genus most commonly used for palaeoclimate reconstruction), cultured under seawater pCO₂ reflecting modern, future (year 2100) and last glacial maximum (LGM) conditions. Skeletal Sr/Ca is indistinguishable between duplicate colonies of the same genotype cultured under the same conditions, but varies significantly in response to seawater pCO₂ in two genotypes of Porites lutea, whilst Porites murrayensis is unaffected. Within P. lutea, the response is not systematic: skeletal Sr/Ca increases significantly (by 2–4%) at high seawater pCO₂ relative to modern in both genotypes, and also increases significantly (by 4%) at low seawater pCO₂ in one genotype. This magnitude of variation equates to errors in reconstructed SST of up to −5 °C.

Coral-based climate records from tropical South Atlantic: 2009/2010 ENSO event in C and O isotopes from Porites corals (Rocas Atoll, Brazil)

Coral skeletons contain records of past environmental conditions due to their long life span and well calibrated geochemical signatures. C and O isotope records of corals are especially interesting, because they can highlight multidecadal variability of local climate conditions beyond the instrumental record, with high fidelity and sub-annual resolution. Although, in order to get an optimal geochemical signal in coral skeleton, sampling strategies must be followed. Here we report one of the first coral-based isotopic record from the Equatorial South Atlantic from two colonies of Porites astreoides from the Rocas Atoll (offshore Brazil), a new location for climate reconstruction. We present time series of isotopic variation from profiles along the corallite valley of one colony and the apex of the corallite fan of the other colony. Significant differences in the isotopic values between the two colonies are observed, yet both record the 2009/2010 El Niño event - a period of widespread coral bleaching - as anomalously negative δ18O values (up to -1 permil). δ13C is found to be measurably affected by the El Niño event in one colony, by more positive values (+0.39 ‰), and together with a bloom of endolithic algae, may indicate physiological alteration of this colony. Our findings indicate that corals from the Rocas Atoll can be used for monitoring climate oscillations in the tropical South Atlantic Ocean.

Tropical Atlantic temperature seasonality at the end of the last interglacial

The end of the last interglacial period, ~118 kyr ago, was characterized by substantial ocean circulation and climate perturbations resulting from instabilities of polar ice sheets. These perturbations are crucial for a better understanding of future climate change. The seasonal temperature changes of the tropical ocean, however, which play an important role in seasonal climate extremes such as hurricanes, floods and droughts at the present day, are not well known for this period that led into the last glacial. Here we present a monthly resolved snapshot of reconstructed sea surface temperature in the tropical North Atlantic Ocean for 117.7±0.8 kyr ago, using coral Sr/Ca and δ¹⁸O records. We find that temperature seasonality was similar to today, which is consistent with the orbital insolation forcing. Our coral and climate model results suggest that temperature seasonality of the tropical surface ocean is controlled mainly by orbital insolation changes during interglacials.

The last interglacial has been suggested as a test bed for models developed for future climate prediction, yet many climatic parameters remain unknown. Here, the authors present a precisely dated fossil coral and show that temperature seasonality in the southern Caribbean Sea 118 ka was similar to today.

Short-term coral bleaching is not recorded by skeletal boron isotopes

Coral skeletal boron isotopes have been established as a proxy for seawater pH, yet it remains unclear if and how this proxy is affected by seawater temperature. Specifically, it has never been directly tested whether coral bleaching caused by high water temperatures influences coral boron isotopes. Here we report the results from a controlled bleaching experiment conducted on the Caribbean corals Porites divaricata, Porites astreoides, and Orbicella faveolata. Stable boron (δ¹¹B), carbon (δ¹³C), oxygen (δ¹⁸O) isotopes, Sr/Ca, Mg/Ca, U/Ca, and Ba/Ca ratios, as well as chlorophyll a concentrations and calcification rates were measured on coral skeletal material corresponding to the period during and immediately after the elevated temperature treatment and again after 6 weeks of recovery on the reef. We show that under these conditions, coral bleaching did not affect the boron isotopic signature in any coral species tested, despite significant changes in coral physiology. This contradicts published findings from coral cores, where significant decreases in boron isotopes were interpreted as corresponding to times of known mass bleaching events. In contrast, δ¹³C and δ¹⁸O exhibited major enrichment corresponding to decreases in calcification rates associated with bleaching. Sr/Ca of bleached corals did not consistently record the 1.2°C difference in seawater temperature during the bleaching treatment, or alternatively show a consistent increase due to impaired photosynthesis and calcification. Mg/Ca, U/Ca, and Ba/Ca were affected by coral bleaching in some of the coral species, but the observed patterns could not be satisfactorily explained by temperature dependence or changes in coral physiology. This demonstrates that coral boron isotopes do not record short-term bleaching events, and therefore cannot be used as a proxy for past bleaching events. The robustness of coral boron isotopes to changes in coral physiology, however, suggests that reconstruction of seawater pH using boron isotopes should be uncompromised by short-term bleaching events.

Intensification of the meridional temperature gradient in the Great Barrier Reef following the Last Glacial Maximum

Tropical south-western Pacific temperatures are of vital importance to the Great Barrier Reef (GBR), but the role of sea surface temperatures (SSTs) in the growth of the GBR since the Last Glacial Maximum remains largely unknown. Here we present records of Sr/Ca and δ¹⁸O for Last Glacial Maximum and deglacial corals that show a considerably steeper meridional SST gradient than the present day in the central GBR. We find a 1–2 °C larger temperature decrease between 17° and 20°S about 20,000 to 13,000 years ago. The result is best explained by the northward expansion of cooler subtropical waters due to a weakening of the South Pacific gyre and East Australian Current. Our findings indicate that the GBR experienced substantial meridional temperature change during the last deglaciation, and serve to explain anomalous deglacial drying of northeastern Australia. Overall, the GBR developed through significant SST change and may be more resilient than previously thought.

The Great Barrier Reef (GBR) is under threat from rising ocean temperatures, yet its response to past temperature change is poorly known. Felis et al. show that the GBR experienced a much steeper temperature gradient during the last deglaciation, suggesting it may be more resilient than previously thought.

Influence of land development on Holocene Porites coral calcification at Nagura Bay, Ishigaki Island, Japan

To evaluate the relationships between coral calcification, thermal stress, and sedimentation and eutrophication linked to human impact (hereafter referred to as "land development") by river discharge, we analyzed growth characteristics in the context of a paleoenvironment that was reconstructed from geochemical signals in modern and fossil (1.2 cal kyr BP and 3.5 cal kyr BP, respectively) massive Porites corals from Nagura Bay ("Nagura") and from modern Porites corals from the estuary of the Todoroki River, Shiraho Reef ("Todoroki"). Both sites are on Ishigaki Island, Japan, and Nagura is located approximately 12 km west of Todoroki. At Nagura, the individual corals provide time windows of 13 (modern), 10 (1.2 cal kyr BP), and 38 yr in length (3.5 cal kyr BP). Here, we present the coral annual calcification for Nagura and Todoroki, and (bi) monthly resolved records of Sr/Ca (a proxy of sea surface temperature (SST)) and Ba/Ca (a proxy of sedimentation and nutrients related to land development) for Nagura. At Nagura, the winter SST was cooler by 2.8°C in the 1.2 cal kyr BP, and the annual and winter SSTs in the 3.5 cal kyr BP were cooler by 2.6°C and 4.6°C, respectively. The annual periodicity of Ba/Ca in modern coral is linked to river discharge and is associated with land development including sugar cane cultivation. Modern coral calcification also has declined with SST warming and increasing Ba/Ca peaks in winter. However, calcification of fossil corals does not appear to have been influenced by variations in Sr/Ca and Ba/Ca. Modern coral growth characteristics at Nagura and Todoroki indicate that coral growth is both spatially and temporally influenced by river discharge and land development. At Nagura, our findings suggest that land development induces negative thermal sensitivity for calcification in winter due to sugar cane harvest, which is a specifically modern phenomenon.

A snapshot of a coral "holobiont": a transcriptome assembly of the scleractinian coral, porites, captures a wide variety of genes from both the host and symbiotic zooxanthellae

Massive scleractinian corals of the genus Porites are important reef builders in the Indo-Pacific, and they are more resistant to thermal stress than other stony corals, such as the genus Acropora. Because coral health and survival largely depend on the interaction between a coral host and its symbionts, it is important to understand the molecular interactions of an entire “coral holobiont”. We simultaneously sequenced transcriptomes of Porites australiensis and its symbionts using the Illumina Hiseq2000 platform. We obtained 14.3 Gbp of sequencing data and assembled it into 74,997 contigs (average: 1,263 bp, N50 size: 2,037 bp). We successfully distinguished contigs originating from the host (Porites) and the symbiont (Symbiodinium) by aligning nucleotide sequences with the decoded Acropora digitifera and Symbiodinium minutum genomes. In contrast to previous coral transcriptome studies, at least 35% of the sequences were found to have originated from the symbionts, indicating that it is possible to analyze both host and symbiont transcriptomes simultaneously. Conserved protein domain and KEGG analyses showed that the dataset contains broad gene repertoires of both Porites and Symbiodinium. Effective utilization of sequence reads revealed that the polymorphism rate in P. australiensis is 1.0% and identified the major symbiotic Symbiodinium as Type C15. Analyses of amino acid biosynthetic pathways suggested that this Porites holobiont is probably able to synthesize most of the common amino acids and that Symbiodinium is potentially able to provide essential amino acids to its host. We believe this to be the first molecular evidence of complementarity in amino acid metabolism between coral hosts and their symbionts. We successfully assembled genes originating from both the host coral and the symbiotic Symbiodinium to create a snapshot of the coral holobiont transcriptome. This dataset will facilitate a deeper understanding of molecular mechanisms of coral symbioses and stress responses.

Elemental markers in elasmobranchs: effects of environmental history and growth on vertebral chemistry

Differences in the chemical composition of calcified skeletal structures (e.g. shells, otoliths) have proven useful for reconstructing the environmental history of many marine species. However, the extent to which ambient environmental conditions can be inferred from the elemental signatures within the vertebrae of elasmobranchs (sharks, skates, rays) has not been evaluated. To assess the relationship between water and vertebral elemental composition, we conducted two laboratory studies using round stingrays, Urobatis halleri, as a model species. First, we examined the effects of temperature (16°, 18°, 24°C) on vertebral elemental incorporation (Li/Ca, Mg/Ca, Mn/Ca, Zn/Ca, Sr/Ca, Ba/Ca). Second, we tested the relationship between water and subsequent vertebral elemental composition by manipulating dissolved barium concentrations (1x, 3x, 6x). We also evaluated the influence of natural variation in growth rate on elemental incorporation for both experiments. Finally, we examined the accuracy of classifying individuals to known environmental histories (temperature and barium treatments) using vertebral elemental composition. Temperature had strong, negative effects on the uptake of magnesium (D_Mg) and barium (D_Ba) and positively influenced manganese (D_Mn) incorporation. Temperature-dependent responses were not observed for lithium and strontium. Vertebral Ba/Ca was positively correlated with ambient Ba/Ca. Partition coefficients (D_Ba) revealed increased discrimination of barium in response to increased dissolved barium concentrations. There were no significant relationships between elemental incorporation and somatic growth or vertebral precipitation rates for any elements except Zn. Relationships between somatic growth rate and D_Zn were, however, inconsistent and inconclusive. Variation in the vertebral elemental signatures of U. halleri reliably distinguished individual rays from each treatment based on temperature (85%) and Ba exposure (96%) history. These results support the assumption that vertebral elemental composition reflects the environmental conditions during deposition and validates the use of vertebral elemental signatures as natural markers in an elasmobranch. Vertebral elemental analysis is a promising tool for the study of elasmobranch population structure, movement, and habitat use.

Vibrational spectroscopic characterization of growth bands in Porites coral from South China Sea

A series of samples from different growth bands of Porites coral skeleton were studied using Raman, infrared reflectance methods. The Raman spectra proved that skeleton samples from different growth bands have the same mineral phase as aragonite, but a band at 133 cm(-1) for the top layer shows a transition from ~120 cm(-1) for vaterite to ~141 cm(-1) for aragonite. It is inferred that the vaterite should be the precursor of aragonite of coral skeleton. The positional shift in the infrared spectra of the skeleton samples from growth bands correlate significantly to their minor elements (Li, Mg, Sr, Mn, Fe and U) contents. Mg, Sr and U especially have significant negative correlations with the positions of the antisymmetric stretching band ν3 at ~1469 cm(-1). And Li shows a high negative correlation with ν2 band (~855 cm(-1)), while Sr and Mn show similar negative correlation with ν4 band (~712 cm(-1)). And Mn also shows a negative correlation with ν1 band (~1082 cm(-1)). A significantly negative correlation is observed for U with ν1+ν4 band (~1786 cm(-1)). However, Fe shows positive correlation with ν1, ν2, ν3, ν4 and ν1+ν4 bands shifts, especially a significant correlation with ν1 band (~1082 cm(-1)). New insights into the characteristics of coral at different growth bands of skeleton are given in present work.

P/Ca in coral skeleton as a geochemical proxy for seawater phosphorus variation in Daya Bay, northern South China Sea

The P/Ca ratio in coral skeletons is considered to be a direct proxy for the nutrient P in seawater. We examined the reliability of this proxy by analyzing P/Ca in a Porites coral collected from a eutrophic area in the northern South China Sea. P concentrations were significantly higher compared to previously reported values from pristine and open seas, corresponding to the elevated nutrients from the study site. We compared coral P/Ca against recent in-situ records of seawater P concentrations. Our results show that P/Ca was primarily a function of TP sw rather than PO(4)sw, and that the signal of skeletal P included not only phosphate, but also organic phosphorus. Besides the form of skeletal P, sub-sampling and analytical procedures and the distinctive nutrient regime were the most reasonable explanations for our results. We suggest that total P in coral skeletons may be an efficient proxy for seawater P variations and associated phytoplankton dynamics in eutrophic environments.

The Rosetta Stone of isotope science and the uranium/lead system

The nucleosynthetic characteristics of U and Pb, together with the interconnectivity between these elements by two radioactive decay chains, are the foundation on which the U/Pb system was able to make a unique contribution to isotope science. The Rosetta Stone is an ancient Egyptian tablet that enabled previously indecipherable hieroglyphics to be translated. In a similar manner, the isotopic investigation of the U/Pb system, by a variety of mass spectrometric instrumentation, has led to our knowledge of the age of the Earth and contributed to thermochronology. In a similar manner, climate change information has been garnered by utilizing the U-Disequilibrium Series to measure the ages of marine archives. The impact of Pb in the environment has been demonstrated in human health, particularly at the peak of leaded petrol consumption in motor vehicles in the 1970s. Variations in the isotopic composition of lead in samples enable the source of the lead to be "fingerprinted" so as to trace the history of the Pb in ice cores and aerosols. The discovery of nuclear fission of (235)U led to the development of nuclear reactors and the isotopic investigation of the Oklo natural reactors. The mass spectrometer is the modern Rosetta Stone of isotope science, which has enabled the isotopic hieroglyphics of the U/Pb system to be investigated to reveal new horizons in our understanding of nature, and to address a number of societal and environmental problems.

Anomalous Ba/Ca signals associated with low temperature stresses in Porites corals from Daya Bay, northern South China Sea

Barium to calcium (Ba/Ca) ratio in corals has been considered as a useful geochemical proxy for upwelling, river flood and other oceanic processes. However, recent studies indicated that additional environmental or biological factors can influence the incorporation of Ba into coral skeletons. In this study, Ba/Ca ratios of two Porites corals collected from Daya Bay, northern South China Sea were analyzed. Ba/Ca signals in the two corals were 'anomalous' in comparison with Ba behaviors seen in other near-shore corals influenced by upwelling or riverine runoff. Our Ba/Ca profiles displayed similar and remarkable patterns characterized by low and randomly fluctuating background signals periodically interrupted by sharp and large synchronous peaks, clearly indicating an environmental forcing. Further analysis indicated that the Ba/Ca profiles were not correlated with previously claimed environmental factors such as precipitation, coastal upwelling, anthropogenic activities or phytoplankton blooms in other areas. The maxima of Ba/Ca appeared to occur in the period of Sr/Ca maxima, coinciding with the winter minimum temperatures, which suggests that the anomalous high Ba/Ca signals were related to winter-time low sea surface temperature. We speculated that the Ba/Ca peaks in corals of the Daya Bay were most likely the results of enrichment of Ba-rich particles in their skeletons when coral polyps retracted under the stresses of anomalous winter low temperatures. In this case, Ba/Ca ratio in relatively high-latitude corals can be a potential proxy for tracing the low temperature stress.

Heavy metal pollution recorded in Porites corals from Daya Bay, northern South China Sea

We examined metal-to-calcium ratios (Fe/Ca, Mn/Ca and Zn/Ca) in the growth bands of two Porites corals from Daya Bay, South China Sea, in order to trace long-term trends in local ambient pollution levels. Although Fe and Mn did not show any obvious increasing trends over 32 years in the period 1976-2007, peak values of Fe/Ca and Mn/Ca occurred in the mid-late 1980s, temporally-coeval with the local construction of a nuclear power station. Furthermore, both corals showed rapid increases in Zn concentrations over the past 14 years (1994-2007), most likely due to increases in domestic and industrial sewage discharge. The Daya Bay corals had higher concentrations of metals than other reported corals from both pristine and seriously polluted locations, suggesting that acute (Fe and Mn) and chronic (Zn) heavy metal contamination has occurred locally over the past approximately 32 years.

Tropical temperature variations since 20,000 years ago: modulating interhemispheric climate change

Tropical sea surface temperatures (SSTs), as thermodynamically recorded in Barbados corals, were 5 degrees C colder than present values 19,000 years ago. Variable tropical SSTs may explain the interhemispheric synchroneity of global climate change as recorded in ice cores, snowline reconstructions, and vegetation records. Radiative changes due to cloud type and cloud cover are plausible mechanisms for maintaining cooler tropical SSTs in the past.

Biological Controls on Coral Sr/Ca and dgr18O Reconstructions of Sea Surface Temperatures

Coral strontium/calcium ratios have been used to infer that the tropical sea surface temperature (SST) cooled by as much as 6 degrees C during the last glacial maximum. In contrast, little or no change has been inferred from other marine-based proxy records. Experimental studies of the effect of growth rate and the magnitude of intraspecific differences indicate that biological controls on coral skeletal strontium/calcium uptake have been underestimated. These results call into question the reliability of strontium/calcium-based SST reconstructions.

Shallow genetic and morphological divergence among seaperches in the South Pacific (family Scorpaenidae; genus Helicolenus)

The phylogenetic relationships among populations of seaperch, Helicolenus spp., in the south-west Pacific were examined with mtDNA markers. Parts of the cytochrome b gene [459 base pair (bp)] and the control region (448 bp) were sequenced in 58 specimens from the south-west Pacific and four specimens of Helicolenus lengerichi from Chile. Only one clade was recognized in New Zealand coastal waters, despite a wide range of colour morphs. This clade also occurred in the mid Tasman Sea on the Norfolk Ridge and around Tasmania and Victoria. A second sympatric clade was identified around Tasmania and Victoria and to the west of New Zealand. A third allopatric clade was identified to the north of New Zealand and in deep water on the Chatham Rise and a fourth clade on the Foundation Seamounts and the Louisville Ridge. Helicolenus lengerichi from Chile formed a fifth clade. Assuming a molecular clock, the clades were estimated to have diverged c. 0.7-2.6 million years ago. Only two clades, around Tasmania and Victoria, were separated using morphology, colour (in live) and dorsal-fin soft ray counts and were confirmed as Helicolenus percoides and Helicolenus barathri. Two characters, orbit diameter and colour variation, previously used to identify two species in New Zealand waters were unreliable characters for species discrimination. Principle component analyses of 11 morphological measures from 67 individuals did not delineate the clades. A canonical discriminant analysis was able to separate four of the five clades, but mean discriminate probabilities were low (77.6%), except for the five Chilean specimens of H. lengerichi (100%).

Heavy metal contents in growth bands of Porites corals: record of anthropogenic and human developments from the Jordanian Gulf of Aqaba

In order to assess pollutants and impact of environmental changes in the coastal region of the Jordanian Gulf of Aqaba, concentrations of six metals were traced through variations in 5 years growth bands sections of recent Porties coral skeleton. X-radiography showed annual growth band patterns extending back to the year 1925. Baseline metal concentrations in Porites corals were established using 35 years-long metal record from late Holocene coral (deposited in pristine environment) and coral from reef that is least exposed to pollution in the marine reserve in the Gulf of Aqaba. The skeleton samples of the collected corals were acid digested and analyzed for their Cd, Cu, Fe, Mn, Pb and Zn content using Flame Atomic Absorption Spectrophotometer (FAAS). All metal profiles (except Fe and Zn) recorded the same metal signature from recent coral (1925-2005) in which low steady baseline levels were displayed in growth bands older than 1965, similar to those obtained from fossil and unpolluted corals. Most metals showed dramatic increase (ranging from 17% to 300%) in growth band sections younger than 1965 suggesting an extensive contamination of the coastal area since the mid sixties. This date represents the beginning of a period that witnessed increasing coastal activities, constructions and urbanization. This has produced a significant reduction in coral skeletal extension rates. Results from this study strongly suggest that Porites corals have a high tendency to accumulate heavy metals in their skeletons and therefore can serve as proxy tools to monitor and record environmental pollution (bioindicators) in the Gulf of Aqaba.

Seasonal characteristics of the Indian Ocean Dipole during the Holocene epoch

The Indian Ocean Dipole (IOD)--an oscillatory mode of coupled ocean-atmosphere variability--causes climatic extremes and socio-economic hardship throughout the tropical Indian Ocean region. There is much debate about how the IOD interacts with the El Niño/Southern Oscillation (ENSO) and the Asian monsoon, and recent changes in the historic ENSO-monsoon relationship raise the possibility that the properties of the IOD may also be evolving. Improving our understanding of IOD events and their climatic impacts thus requires the development of records defining IOD activity in different climatic settings, including prehistoric times when ENSO and the Asian monsoon behaved differently from the present day. Here we use coral geochemical records from the equatorial eastern Indian Ocean to reconstruct surface-ocean cooling and drought during individual IOD events over the past approximately 6,500 years. We find that IOD events during the middle Holocene were characterized by a longer duration of strong surface ocean cooling, together with droughts that peaked later than those expected by El Niño forcing alone. Climate model simulations suggest that this enhanced cooling and drying was the result of strong cross-equatorial winds driven by the strengthened Asian monsoon of the middle Holocene. These IOD-monsoon connections imply that the socioeconomic impacts of projected future changes in Asian monsoon strength may extend throughout Australasia.