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Wiese C, Abele M, Al B, Altmann M, Steiner A, Kalbfuß N, Strohmayr A, Ravikumar R, Park CH, Brunschweiger B, Meng C, Facher E, Ehrhardt DW, Falter-Braun P, Wang ZY, Ludwig C, Assaad FF. Regulation of adaptive growth decisions via phosphorylation of the TRAPPII complex in Arabidopsis. J Cell Biol 2024; 223:e202311125. [PMID: 38558238 PMCID: PMC10983811 DOI: 10.1083/jcb.202311125] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Revised: 01/31/2024] [Accepted: 02/15/2024] [Indexed: 04/04/2024] Open
Abstract
Plants often adapt to adverse or stress conditions via differential growth. The trans-Golgi network (TGN) has been implicated in stress responses, but it is not clear in what capacity it mediates adaptive growth decisions. In this study, we assess the role of the TGN in stress responses by exploring the previously identified interactome of the Transport Protein Particle II (TRAPPII) complex required for TGN structure and function. We identified physical and genetic interactions between AtTRAPPII and shaggy-like kinases (GSK3/AtSKs) and provided in vitro and in vivo evidence that the TRAPPII phosphostatus mediates adaptive responses to abiotic cues. AtSKs are multifunctional kinases that integrate a broad range of signals. Similarly, the AtTRAPPII interactome is vast and considerably enriched in signaling components. An AtSK-TRAPPII interaction would integrate all levels of cellular organization and instruct the TGN, a central and highly discriminate cellular hub, as to how to mobilize and allocate resources to optimize growth and survival under limiting or adverse conditions.
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Affiliation(s)
- Christian Wiese
- Biotechnology of Natural Products, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
- Botany, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Miriam Abele
- Botany, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
- Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), TUM School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Benjamin Al
- Botany, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Melina Altmann
- Institute of Network Biology (INET), Molecular Targets and Therapeutics Center (MTTC), Helmholtz Center Munich, German Research Center for Environmental Health, Munich-Neuherberg, Germany
| | - Alexander Steiner
- Botany, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Nils Kalbfuß
- Botany, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Alexander Strohmayr
- Biotechnology of Natural Products, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
- Botany, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Raksha Ravikumar
- Botany, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Chan Ho Park
- Department of Plant Biology, Carnegie Institution for Science, Stanford, CA, USA
| | - Barbara Brunschweiger
- Botany, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Chen Meng
- Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), TUM School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Eva Facher
- Systematic Botany and Mycology, Faculty of Biology, Ludwig-Maximilians-Universität (LMU) München, Planegg-Martinsried, Germany
| | - David W. Ehrhardt
- Department of Plant Biology, Carnegie Institution for Science, Stanford, CA, USA
| | - Pascal Falter-Braun
- Institute of Network Biology (INET), Molecular Targets and Therapeutics Center (MTTC), Helmholtz Center Munich, German Research Center for Environmental Health, Munich-Neuherberg, Germany
| | - Zhi-Yong Wang
- Department of Plant Biology, Carnegie Institution for Science, Stanford, CA, USA
| | - Christina Ludwig
- Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), TUM School of Life Sciences, Technical University of Munich, Freising, Germany
| | - Farhah F. Assaad
- Biotechnology of Natural Products, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
- Botany, TUM School of Life Sciences, Technical University of Munich, Freising, Germany
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Wiese C, Abele M, Al B, Altmann M, Steiner A, Kalbfuß N, Strohmayr A, Ravikumar R, Park CH, Brunschweiger B, Meng C, Facher E, Ehrhardt DW, Falter-Braun P, Wang ZY, Ludwig C, Assaad FF. Regulation of adaptive growth decisions via phosphorylation of the TRAPPII complex in Arabidopsis. bioRxiv 2023:2023.04.24.537966. [PMID: 37986925 PMCID: PMC10659361 DOI: 10.1101/2023.04.24.537966] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2023]
Abstract
Plants often adapt to adverse or stress conditions via differential growth. The trans-Golgi Network (TGN) has been implicated in stress responses, but it is not clear in what capacity it mediates adaptive growth decisions. In this study, we assess the role of the TGN in stress responses by exploring the interactome of the Transport Protein Particle II (TRAPPII) complex, required for TGN structure and function. We identified physical and genetic interactions between TRAPPII and shaggy-like kinases (GSK3/AtSKs). Kinase assays and pharmacological inhibition provided in vitro and in vivo evidence that AtSKs target the TRAPPII-specific subunit AtTRS120/TRAPPC9. GSK3/AtSK phosphorylation sites in AtTRS120/TRAPPC9 were mutated, and the resulting AtTRS120 phosphovariants subjected to a variety of single and multiple stress conditions in planta . The non-phosphorylatable TRS120 mutant exhibited enhanced adaptation to multiple stress conditions and to osmotic stress whereas the phosphomimetic version was less resilient. Higher order inducible trappii atsk mutants had a synthetically enhanced defect in root gravitropism. Our results suggest that the TRAPPII phosphostatus mediates adaptive responses to abiotic cues. AtSKs are multifunctional kinases that integrate a broad range of signals. Similarly, the TRAPPII interactome is vast and considerably enriched in signaling components. An AtSK-TRAPPII interaction would integrate all levels of cellular organization and instruct the TGN, a central and highly discriminate cellular hub, as to how to mobilize and allocate resources to optimize growth and survival under limiting or adverse conditions.
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Al B, Freimooser S, Holzscheck N, Traidl S, Zeitvogel J, Schneider H, Dorda M, Dittrich-Breiholz O, Werfel T, Seidel J. 036 Identifying immune targets for atopic dermatitis relapse prevention. J Invest Dermatol 2021. [DOI: 10.1016/j.jid.2021.08.037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Kalde M, Elliott L, Ravikumar R, Rybak K, Altmann M, Klaeger S, Wiese C, Abele M, Al B, Kalbfuß N, Qi X, Steiner A, Meng C, Zheng H, Kuster B, Falter-Braun P, Ludwig C, Moore I, Assaad FF. Interactions between Transport Protein Particle (TRAPP) complexes and Rab GTPases in Arabidopsis. Plant J 2019; 100:279-297. [PMID: 31264742 DOI: 10.1111/tpj.14442] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2019] [Revised: 05/15/2019] [Accepted: 06/11/2019] [Indexed: 05/23/2023]
Abstract
Transport Protein Particle II (TRAPPII) is essential for exocytosis, endocytosis, protein sorting and cytokinesis. In spite of a considerable understanding of its biological role, little information is known about Arabidopsis TRAPPII complex topology and molecular function. In this study, independent proteomic approaches initiated with TRAPP components or Rab-A GTPase variants converge on the TRAPPII complex. We show that the Arabidopsis genome encodes the full complement of 13 TRAPPC subunits, including four previously unidentified components. A dimerization model is proposed to account for binary interactions between TRAPPII subunits. Preferential binding to dominant negative (GDP-bound) versus wild-type or constitutively active (GTP-bound) RAB-A2a variants discriminates between TRAPPII and TRAPPIII subunits and shows that Arabidopsis complexes differ from yeast but resemble metazoan TRAPP complexes. Analyzes of Rab-A mutant variants in trappii backgrounds provide genetic evidence that TRAPPII functions upstream of RAB-A2a, allowing us to propose that TRAPPII is likely to behave as a guanine nucleotide exchange factor (GEF) for the RAB-A2a GTPase. GEFs catalyze exchange of GDP for GTP; the GTP-bound, activated, Rab then recruits a diverse local network of Rab effectors to specify membrane identity in subsequent vesicle fusion events. Understanding GEF-Rab interactions will be crucial to unravel the co-ordination of plant membrane traffic.
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Affiliation(s)
- Monika Kalde
- Department of Plant Sciences, University of Oxford, Oxford, OX1 3RB, UK
| | - Liam Elliott
- Department of Plant Sciences, University of Oxford, Oxford, OX1 3RB, UK
| | - Raksha Ravikumar
- Plant Science Department, Botany, Technische Universität München, Freising, 85354, Germany
| | - Katarzyna Rybak
- Plant Science Department, Botany, Technische Universität München, Freising, 85354, Germany
| | - Melina Altmann
- Institute of Network Biology (INET), Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH), Neuherberg, 85764, Germany
| | - Susan Klaeger
- Chair of Proteomics and Bioanalytics, Technische Universität München, Freising, 85354, Germany
| | - Christian Wiese
- Plant Science Department, Botany, Technische Universität München, Freising, 85354, Germany
| | - Miriam Abele
- Plant Science Department, Botany, Technische Universität München, Freising, 85354, Germany
| | - Benjamin Al
- Plant Science Department, Botany, Technische Universität München, Freising, 85354, Germany
| | - Nils Kalbfuß
- Plant Science Department, Botany, Technische Universität München, Freising, 85354, Germany
| | - Xingyun Qi
- Department of Biology, McGill University, Montreal, H3B 1A1, Canada
| | - Alexander Steiner
- Plant Science Department, Botany, Technische Universität München, Freising, 85354, Germany
| | - Chen Meng
- BayBioMS, Bavarian Center for Biomolecular Mass Spectrometry, Technische Universität München, Freising, 85354, Germany
| | - Huanquan Zheng
- Department of Biology, McGill University, Montreal, H3B 1A1, Canada
| | - Bernhard Kuster
- Chair of Proteomics and Bioanalytics, Technische Universität München, Freising, 85354, Germany
| | - Pascal Falter-Braun
- Institute of Network Biology (INET), Helmholtz Zentrum München, Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH), Neuherberg, 85764, Germany
- Faculty of Biology, Microbe-Host-Interactions, Ludwig-Maximilians-Universität (LMU) München, Planegg-Martinsried, 82152, Germany
| | - Christina Ludwig
- BayBioMS, Bavarian Center for Biomolecular Mass Spectrometry, Technische Universität München, Freising, 85354, Germany
| | - Ian Moore
- Department of Plant Sciences, University of Oxford, Oxford, OX1 3RB, UK
| | - Farhah F Assaad
- Plant Science Department, Botany, Technische Universität München, Freising, 85354, Germany
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Sabak M, Al-Hadidi A, Kowalenko T, Al B, Batman A, Oktay M, Kazaz T, Hakmeh W. 338 Workplace Violence in Emergency Departments in Turkey: A National Survey. Ann Emerg Med 2018. [DOI: 10.1016/j.annemergmed.2018.08.343] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Zengin S, Kartal S, Al B, Orkmez M, Taysi S, Yildirim C. An Assessment of Oxidant/Antioxidant Status and Oxidative Stress Index Levels in Patients with Carbon Monoxide Poisoning. HONG KONG J EMERG ME 2017. [DOI: 10.1177/102490791302000604] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Objective The purposes of this study is to evaluate the variations of total antioxidant status (TAS) and total oxidant status (TOS) levels in the treatment process of carbon monoxide poisoning (COP) and to learn more about the pathophysiology of COP. Methods Between 2011 and 2012, 113 patients were admitted to our emergency department with acute COP, and 50 healthy volunteers were used as a control group in this study. Serum, plasma and erythrocyte components were prepared for all the COP patients on admission. They were repeated at the 90th and 180th minute of treatment. The samples were taken once from the control group. Serum oxidant/antioxidant status levels and carboxyhaemoglobin (COHb) were measured. Ratio of TOS to TAS, known as oxidative stress index (OSI) was calculated. Results No correlation was observed among age, gender, COHb level, with the levels of TAS, TOS, and OSI. Admission levels of TOS and OSI in patients with COP were higher than that observed at 90th minutes (p<0.001). These values were also higher in COP patients compared to control group (p<0.001). On the other hand, no statistical differences were observed in TAS levels between the study and control groups (p>0.05). Conclusions Our results show that serum TOS and OSI levels increase in COP patients. Oxidative stress should play a role in the pathophysiology of COP. (Hong Kong j.emerg.med. 2013;20:352-358)
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Affiliation(s)
- S Zengin
- Gaziantep University School of Medicine, Medical Biochemistry, Gaziantep, Turkey
| | | | | | - M Orkmez
- Gaziantep University School of Medicine, Medical Biochemistry, Gaziantep, Turkey
| | - S Taysi
- Gaziantep University School of Medicine, Medical Biochemistry, Gaziantep, Turkey
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Al B, Doğan M, Zengin S, Taysi S, Sarcan E, Yıldırım C. Evaluation of anterior pituitary function in patients with chronic brain injury (professional football players). Afr J Emerg Med 2013. [DOI: 10.1016/j.afjem.2013.08.027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Zengin S, Yilmaz M, Al B, Yildirim C, Yavuz E, Akcali A. O-06 THE USE OF THERAPEUTIC RED CELL EXCHANGE IN THE TREATMENT OF SEVERE CARBON MONOXIDE POISONING: AN ACADEMIC EMERGENCY DEPARTMENT'S EXPERIENCES. Transfus Apher Sci 2012. [DOI: 10.1016/s1473-0502(12)70007-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Koenderman AHL, ter Hart HGJ, Prins-de Nijs IMM, Bloem J, Stoffers S, Kempers A, Derksen GJ, Al B, Dekker L, Over J. Virus safety of plasma products using 20 nm instead of 15 nm filtration as virus removing step. Biologicals 2012; 40:473-81. [PMID: 22901944 DOI: 10.1016/j.biologicals.2012.07.010] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2012] [Revised: 07/06/2012] [Accepted: 07/23/2012] [Indexed: 10/28/2022] Open
Abstract
During the manufacture of human plasma derivatives, a series of complementary measures are undertaken to prevent transmission of blood-borne viruses. Virus filtration using 15 nm (Planova15N) filters has successfully been implemented in manufacturing processes for various plasma derivatives primarily because virus filtration is a technique, mild for proteins, that can effectively remove even small non-lipid-enveloped viruses, such as HAV and parvovirus B19. However, the use of 15 nm filters has limitations with regard to protein capacity of the filters and the process flow, resulting in an expensive manufacturing step. Therefore, studies were performed to test whether the use of 20 nm (Planova20N) filters, having different characteristics compared to 15 nm filters, can be an alternative for the use of 15 nm filters. It is shown that 20 nm filtration can be an alternative for 15 nm filtration. However, the virus removal capacity of the 20 nm filters depends on the plasma product that is filtered. Therefore, an optimisation study must be performed with regard to process parameters such as pressure, pH and protein concentration for each plasma product. In this study, using optimised conditions, the virus removal capacity of 20 nm filters appears to be comparable or even better when compared to that of 15 nm filters.
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Affiliation(s)
- A H L Koenderman
- Sanquin Blood Supply, Division of Plasma Products, Product Development, PO Box 9190, 1006 AD Amsterdam, The Netherlands.
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Abstract
The frequency of human T-cell lymphotropic virus types I and II (HTLV-I/II) polymerase chain reaction (PCR) reactivity was studied in two groups of high-risk individuals in Amsterdam: hard drug users and heterosexual outpatients of the sexual transmitted diseases (STD) clinic. Both groups were seronegative as determined by enzyme-linked immunosorbent assay (ELISA), Western blot (WB), and radioimmuno-precipitation assay (RIPA). Detection of HTLV-I and HTLV-II in peripheral blood mononuclear cells (MNC) was performed by PCR, using primer sets indicative for the pol and tax genes. In the hard drug users group (n = 25) no evidence of HTLV-I/II infection was found whereas in the STD group (n = 21) one individual was identified with HTLV-II proviral DNA. Positive reactions in PCR were confirmed only for three seropositive controls after in vitro culture of MNC but not for the PCR-positive, seronegative individual. Virus production in vitro could not be detected by a sensitive HTLV-I antigen capture assay for viral p24gag proteins after in vitro T-cell stimulation of MNC, either from PCR-positive or PCR-seronegative individuals. This suggests again a low viral production rate. It is concluded that infection with HTLV-II can be detected among high-risk seronegative individuals.
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Affiliation(s)
- B Al
- Department of Developmental Research, Central Laboratory of The Netherlands Red Cross Blood Transfusion Service, Amsterdam
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Roholl PJ, Al B, Hoeben KA, Leene W. T-cell differentiation in the rabbit. II. Con A and PHA response of thymus, spleen and lymph node cells and of thymus subpopulations; influence of dexamethasone treatment. Thymus 1983; 5:167-78. [PMID: 6349021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Mitogen-induced proliferation of rabbit lymphocytes from the thymus (Thy), spleen (Spl) and lymph node (LN) was measured by [3H]thymidine incorporation. The various cell suspensions taken from normal animals showed wide differences in their response to Con A and PHA. Cell suspensions taken from steroid-treated animals did not show differences in response. The disappearance of these differences in mitogen reactivity after steroid treatment is caused by a decreased Con A response of LN cells and an increased Con A and PHA response of Thy cells. The results suggest the existence of a steroid-sensitive (Ss). Con A-responsive cell population in LN cells. The mitogen response of untreated and steroid-resistant (SR) Thy cells was further investigated in cell suspensions separated on density gradients and in cell suspensions enriched in, or depleted of cells bearing receptors for Fc (T gamma and T non-gamma, respectively). It is concluded that Ss thymocytes of high density are mitogen non-reactive, and that Ss cells of low and medium density consist of subpopulations of cells reactive to Con A and/or to PHA. Sr thymocytes still displayed heterogeneity in buoyant density and mitogen responsiveness. Heavy cells and T gamma cells (10% of the Sr cells were T gamma) showed a lowered mitogen response. The results are discussed in relation to data describing the localization of the cell types which differ in mitogen reactivity. The results support the idea of two differentiation pathways, one for Ss and the other for Sr thymocytes.
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Gerats AG, de Vlaming P, Doodeman M, Al B, Schram AW. Genetic control of the conversion of dihydroflavonols into flavonols and anthocyanins in flowers of Petunia hybrida. Planta 1982; 155:364-8. [PMID: 24271874 DOI: 10.1007/bf00429466] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/1982] [Accepted: 05/24/1982] [Indexed: 05/26/2023]
Abstract
Petunia hybrida mutants, homozygous recessive for one of the genes An1, An2, An6, or An9 do not show anthocyanin synthesis in in vitro complementation experiments per se (see also Kho et al. 1977). Extracts of flowers of these mutants all provoke anthocyanin synthesis in isolated petals of an an3an3 mutant. Mutants homozygous recessive for one of the genes An1, An2, An6, or An9 and homozygous recessive for F1 accumulate dihydroflavonols in comparable amounts. The synthesis of dihydromyricetin is blocked in an1an1 mutants, which indicates a regulating effect of the gene An1 on the gene Hfl. Similar mutants, but dominant for F1, accumulate flavonols (kaempferol and quercetin) instead of dihydroflavonols. Myricetin is accumulated in minor amounts and not at all in an1an1 mutant. Furthermore, the synthesis of this flavonol is not controlled by the gene F1. The synthesis of cyanidin (derivatives) is greatly reduced when flavonols are synthesized (F1 dominant). In mutants dominant for Ht1 and Hf1 and thus able to synthesize cyanidin (derivatives) and delphinidin (derivatives), predominantly delphinidin (derivatives) are synthesized. The results indicate that kaempferol (derivatives), quercetin (derivatives), and delphinidin (derivatives) are the main endproducts of flavonoid biosynthesis in Petunia hybrida.
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Affiliation(s)
- A G Gerats
- Genetisch Instituut, Universiteit van Amsterdam, Kruislaan 318, NL-1098 SM, Amsterdam, The Netherlands
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