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Villarreal E, Ramírez P, Gordon M, Vicent C, Gómez MD, de Hevia L, Vacacela K, Alonso R, Vila J. Anti-endotoxin antibodies consumption in cardiovascular collapse: Pathophysiological concerns. Med Intensiva 2023; 47:338-344. [PMID: 36344341 DOI: 10.1016/j.medine.2022.04.019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2022] [Accepted: 04/26/2022] [Indexed: 05/29/2023]
Abstract
OBJECTIVE Abnormal endotoxin activity in critically ill patients has been described in the absence of Gram-negative bacterial (GNB) infection. As disease severity seems to be crucial in the detection of this phenomenon, we decided to assess and compare endotoxin exposure in those patients representing the critical situation: septic shock and cardiogenic shock. DESIGN Prospective, observational non intervention study. SETTING Critical Care Department of a University tertiary hospital. PATIENTS Cardiogenic shock (CS) and septic shock (SS) patients. INTERVENTIONS None. MEASUREMENTS AND MAIN RESULTS Follow-up was performed for the first three days. Inflammatory biomarkers (C-reactive protein, procalcitonin and interleuquin-6) and IgM antiendotoxin-core antibodies titter (IgM EndoCAb) were daily analyzed. Sixty-two patients were included; twenty-five patients with SS and thirty-seven with CS. Microbial etiology was established in 23 SS patients (92%) and GNB were present in 13 cases (52%). Although infection was suspected and even treated in 30 CS patients (81%), any episode could be finally confirmed. EndoCAb consumption was more intense in SS patients, although twenty-two CS patients (59.5%) had IgM anti-endotoxin value below 10th percentile range for healthy people. No statistically significant difference in endotoxin exposure was detected between Gram-positive and Gram-negative infections in the SS group. Endotoxin exposure ability to distinguish between SS and CS was moderate (AUC 0.7892, 95% IC: 0.6564-0.9218). CONCLUSIONS In the severely ill patient some mechanisms take place allowing endotoxin incursion and therefore blurring the limits of diseases pathophysiology. Our work representatively shows how exposure to endotoxin was not fully capable of distinguishing between CS and SS.
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Affiliation(s)
- E Villarreal
- Critical Care Department, Hospital Universitario y Politécnico la Fe, Valencia, Spain
| | - P Ramírez
- Critical Care Department, Hospital Universitario y Politécnico la Fe, Valencia, Spain.
| | - M Gordon
- Critical Care Department, Hospital Universitario y Politécnico la Fe, Valencia, Spain
| | - C Vicent
- Critical Care Department, Hospital Universitario y Politécnico la Fe, Valencia, Spain
| | - M D Gómez
- Microbiology Department, Hospital Universitario y Politécnico la Fe, Valencia, Spain
| | - L de Hevia
- Critical Care Department, Hospital Universitario y Politécnico la Fe, Valencia, Spain
| | - K Vacacela
- Critical Care Department, Hospital Universitario y Politécnico la Fe, Valencia, Spain
| | - R Alonso
- Laboratory Department, Hospital Universitario y Politécnico la Fe, Valencia, Spain
| | - J Vila
- Department of Microbiology, Hospital Clinic, IDIBAPS, School of Medicine, University of Barcelona, Barcelona, Spain
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2
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Castellanos-Ortega Á, Broch MJ, Palacios-Castañeda D, Gómez-Tello V, Valdivia M, Vicent C, Madrid I, Martinez N, Párraga MJ, Sancho E, Fuentes-Dura MDC, Sancerni-Beitia MD, García-Ros R. Competency assessment of residents of Intensive Care Medicine through a simulation-based objective structured clinical evaluation (OSCE). A multicenter observational study. Med Intensiva 2022; 46:491-500. [PMID: 36057440 DOI: 10.1016/j.medine.2022.01.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Accepted: 01/22/2022] [Indexed: 06/15/2023]
Abstract
OBJECTIVES The current official model of training in Intensive Care Medicine (ICM) in Spain is based on exposure to experiences through clinical rotations. The main objective was to determine the level of competency (I novice to V independent practitioner) achieved by the residents at the end of the 3rd year of training (R3) in ICM through a simulation-based OSCE. Secondary objectives were: (1) To identify gaps in performance, and (2) To investigate the reliability and feasibility of conducting simulation-based assessment at multiple sites. DESIGN Observational multicenter study. SETTING Thirteen Spanish ICU Departments. PARTICIPANTS Thirty six R3. INTERVENTION The participants performed on five, 15-min, high-fidelity crisis scenarios in four simulation centers. The performances were video recorded for later scoring by trained raters. MAIN VARIABLES OF INTEREST Via a Delphi technique, an independent panel of expert intensivists identified critical essential performance elements (CEPE) for each scenario to define the levels of competency. RESULTS A total of 176 performances were analyzed. The internal consistency of the check-lists were adequate (KR-20 range 0.64-0.79). Inter-rater reliability was strong [median Intraclass Correlation Coefficient across scenarios: 0.89 (0.65-0.97)]. Competency levels achieved by R3 were: Level I (18.8%), II (35.2%), III (42.6%), IV/V (3.4%). Overall, a great heterogeneity in performance was observed. CONCLUSION The expected level of competency after one year in the ICU was achieved only in half of the performances. A more evidence-based educational approach is needed. Multiple center simulation-based assessment showed feasibility and reliability as an evaluation method of competency. TRIAL REGISTRATION COBALIDATION. NCT04278976. (https://register. CLINICALTRIALS gov).
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Affiliation(s)
- Á Castellanos-Ortega
- Intensive Care Department, Hospital Universitario y Politécnico La Fe, Valencia, Spain
| | - M J Broch
- Intensive Care Department, Hospital Universitario y Politécnico La Fe, Valencia, Spain
| | | | - V Gómez-Tello
- Intensive Care Department, University Hospital Moncloa, Madrid, Spain
| | - M Valdivia
- Intensive Care Department, Hospital Puerta de Hierro-Majadahonda, Spain
| | - C Vicent
- Intensive Care Department, Hospital Universitario y Politécnico La Fe, Valencia, Spain
| | - I Madrid
- Intensive Care Department, Hospital Universitario y Politécnico La Fe, Valencia, Spain
| | - N Martinez
- Intensive Care Department, Hospital Puerta de Hierro-Majadahonda, Spain
| | - M J Párraga
- Intensive Care Department, Hospital Universitario Morales Meseguer, Murcia, Spain
| | - E Sancho
- Intensive Care Department, Hospital Universitario y Politécnico La Fe, Valencia, Spain
| | - M D C Fuentes-Dura
- Department of Methodology of the Behavioral Sciences, University of Valencia, Spain
| | - M D Sancerni-Beitia
- Department of Methodology of the Behavioral Sciences, University of Valencia, Spain
| | - R García-Ros
- Department of Developmental and Educational Psychology, University of Valencia, Spain.
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3
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Castellanos-Ortega Á, Broch M, Palacios-Castañeda D, Gómez-Tello V, Valdivia M, Vicent C, Madrid I, Martinez N, Párraga M, Sancho E, Fuentes-Dura M, Sancerni-Beitia M, García-Ros R. Competency assessment of residents of Intensive Care Medicine through a simulation-based objective structured clinical evaluation (OSCE). A multicenter observational study. Med Intensiva 2022. [DOI: 10.1016/j.medin.2022.01.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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4
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Castellanos-Ortega A, Broch M, Barrios M, Fuentes-Dura M, Sancerni-Beitia M, Vicent C, Gimeno R, Ramírez P, Pérez F, García-Ros R. Análisis de la aceptación y validez de los métodos utilizados para la implementación de un programa de formación basado en competencias en un servicio de Medicina Intensiva de un hospital universitario de referencia. Med Intensiva 2021. [DOI: 10.1016/j.medin.2019.12.007] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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5
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Castellanos-Ortega A, Broch MJ, Barrios M, Fuentes-Dura MC, Sancerni-Beitia MD, Vicent C, Gimeno R, Ramírez P, Pérez F, García-Ros R. Acceptance and validity of the methods used to implement a competency based medical education programme in an Intensive Care Department of a teaching referral center. Med Intensiva 2021; 45:411-420. [PMID: 34563341 DOI: 10.1016/j.medine.2019.12.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2019] [Accepted: 12/02/2019] [Indexed: 11/17/2022]
Abstract
OBJECTIVES 1. To determine the satisfaction of tutors and residents with a specific methodology used to implement CoBaTrICE. 2. To determine the reliability and validity of the global rating scales designed ad hoc to assess the performance of the residents for training purposes. DESIGN Prospective cohort study. PARTICIPANTS All the residents and tutors of the ICU Department of the Hospital Universitario y Politécnico la Fe de Valencia. INTERVENTION CoBaTrICE implementation started in March 2016, it was based on: (1) Training the tutors in feedback techniques; (2) Performing multiple objective and structured work based assessments to achieve the competences of the program; and (3) The use of an electronic portfolio to promote learning reflection and to collect the evidence that learning was taking place. METHODS The acceptance of CoBaTrICE was explored through a satisfaction survey conducted after 9 months of implementation of the training program. The 15 residents and 5 tutors of the ICU Department were asked about the methodology of the formative assessments, the quality of the feedback, self-learning regulation and the electronic portfolio usefulness. The validity of the global rating scales was assessed through the tests alfa de Cronbach, reliability and generalizability indexes, and intraclass correlation coefficient. RESULTS The implementation of CoBaTrICE was satisfactory in all the dimensions studied. The global rating scales used for formative purposes showed reliability and validity. CONCLUSIONS The methodology used to implement CoBaTrICE was highly valued by tutors and residents. The global rating scales used for formative purposes showed reliability and validity.
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Affiliation(s)
- A Castellanos-Ortega
- Servicio de Medicina Intensiva, Hospital Universitario y Politécnico la Fe, Valencia, Spain
| | - M J Broch
- Servicio de Medicina Intensiva, Hospital Universitario y Politécnico la Fe, Valencia, Spain
| | - M Barrios
- Servicio de Medicina Intensiva, Hospital Universitario y Politécnico la Fe, Valencia, Spain
| | - M C Fuentes-Dura
- Departamento de Metodología de Ciencias del Comportamiento, Universidad de Valencia, Valencia, Spain
| | - M D Sancerni-Beitia
- Departamento de Metodología de Ciencias del Comportamiento, Universidad de Valencia, Valencia, Spain
| | - C Vicent
- Servicio de Medicina Intensiva, Hospital Universitario y Politécnico la Fe, Valencia, Spain
| | - R Gimeno
- Servicio de Medicina Intensiva, Hospital Universitario y Politécnico la Fe, Valencia, Spain
| | - P Ramírez
- Servicio de Medicina Intensiva, Hospital Universitario y Politécnico la Fe, Valencia, Spain
| | - F Pérez
- Servicio de Medicina Intensiva, Hospital Universitario y Politécnico la Fe, Valencia, Spain
| | - R García-Ros
- Departamento de Psicología Evolutiva y de la Educación, Universidad de Valencia, Valencia, Spain.
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6
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Rodríguez-Pintó I, Espinosa G, Erkan D, Shoenfeld Y, Cervera R, Cervera R, Espinosa G, Rodríguez-Pintó I, Shoenfeld Y, Erkan D, Piette JC, Jacek M, Roca B, Tektonidou M, Moutsopoulos H, Boffa J, Chapman J, Stojanovich L, Veloso MP, Praprotnik S, Traub B, Levy R, Daryl T, Daryl T, Boffa MC, Makatsaria A, Ruano M, Allievi A, You W, Khamastha M, Hughes S, Menendez Suso J, Pacheco J, Boriotti MF, Dias C, Pangtey G, Miller S, Policepatil S, Larissa L, Marjatta S, Carolyn S, Noortje T, Reiner K, Arteaga S, Leilani T, Langsford D, Niedzwiecki M, Queyrel V, Moroti-Constantinescu R, Romero C, Jeremic K, Urbano A, Hurtado-García R, Kumar Das A, Costedoat-Chalumeau N, Yngvar F, Gomez-Puerta JA, de Meigs E, Smith JP, Zakharova E, Nayer A, Douglas W, Lyndsey R, Blanco V, Vicent C, Natalya K, Damian L, Valentini E, Giula B, Casal Moura M, Araújo Loperena O, Ritter Susan Y, Guettrot Imbert G, Almasri H, Hospach T, Mouna B, Robles A, Wilson H, Guisado P, Ruiz R, Rodriguez J. The effect of triple therapy on the mortality of catastrophic anti-phospholipid syndrome patients. Rheumatology (Oxford) 2018; 57:1264-1270. [DOI: 10.1093/rheumatology/key082] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2017] [Revised: 02/28/2018] [Indexed: 01/19/2023] Open
Affiliation(s)
| | - Gerard Espinosa
- Department of Autoimmune Diseases, Hospital Clínic, Barcelona, Spain
| | - Doruk Erkan
- Barbara Volcker Center for Women and Rheumatic Disease, Hospital for Special Surgery, New York, NY, USA
| | - Yehuda Shoenfeld
- Zabludowicz Center for Autoimmune Diseases, Sheba Medical Center, Tel Aviv, Israel
| | - Ricard Cervera
- Department of Autoimmune Diseases, Hospital Clínic, Barcelona, Spain
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7
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Company-Albir MJ, Ruíz-Ramos J, Solana Altabella A, Marqués-Miñana MR, Vicent C, Poveda JL. Haemodialysis significantly reduces serum levetiracetam levels inducing epileptic seizures: Case report. J Clin Pharm Ther 2017; 42:774-775. [PMID: 28555936 DOI: 10.1111/jcpt.12568] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2017] [Accepted: 05/04/2017] [Indexed: 12/30/2022]
Abstract
WHAT IS KNOWN AND OBJECTIVE Levetiracetam is used in the treatment of some forms of epilepsy. In renal impairment and patients on chronic haemodialysis, dose adjustment is required. We report a case. CASE DESCRIPTION This case report describes a woman on levetiracetam treatment who presented with generalized tonic-clonic seizures during a haemodialysis session. We report on treatment adjustment and on the impact of dialysis on levetiracetam levels. WHAT IS NEW AND CONCLUSION Haemodialysis reduces serum levetiracetam concentration and can lead to subtherapeutic levels. Close monitoring is necessary when dialysis is used on patients receiving anticonvulsant drugs that are extensively eliminated by the procedure.
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Affiliation(s)
- M J Company-Albir
- Servicio de Farmacia, Área del Medicamento, Hospital Universitari i Politècnic La Fe, Valencia, Spain
| | - J Ruíz-Ramos
- Unidad de Cuidados Intensivos, Hospital Universitari i Politècnic La Fe, Valencia, Spain
| | - A Solana Altabella
- Servicio de Farmacia, Área del Medicamento, Hospital Universitari i Politècnic La Fe, Valencia, Spain
| | - M R Marqués-Miñana
- Servicio de Farmacia, Área del Medicamento, Hospital Universitari i Politècnic La Fe, Valencia, Spain
| | - C Vicent
- Unidad de Cuidados Intensivos, Hospital Universitari i Politècnic La Fe, Valencia, Spain
| | - J L Poveda
- Servicio de Farmacia, Área del Medicamento, Hospital Universitari i Politècnic La Fe, Valencia, Spain
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8
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Álvarez-Pérez M, Velado M, García-Puentes D, Sáez E, Vicent C, Fernández de la Pradilla R, Viso A, de la Torre MC, Sierra MA. Sulfur Groups Improve the Performance of Triazole- and Triazolium-Based Interaction Units in Anion Binding. J Org Chem 2017; 82:3341-3346. [PMID: 28218535 DOI: 10.1021/acs.joc.7b00261] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
An NMR comparative study of 1,2,3-triazole and triazolium anion recognition units containing sulfoxide, sulfone, and sulfoximine groups at C4 unveils an enhancement in binding ability up to ≈1 kcal/mol in acetone-d6 correlated with a theoretical increase of H5 acidity. DFT calculations provide insight into binding modes in line with experimental data for these receptors.
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Affiliation(s)
- Mónica Álvarez-Pérez
- Instituto de Química Orgánica General , Consejo Superior de Investigaciones Científicas (IQOG-CSIC), Juan de la Cierva 3, 28006-Madrid, Spain
| | - Marina Velado
- Instituto de Química Orgánica General , Consejo Superior de Investigaciones Científicas (IQOG-CSIC), Juan de la Cierva 3, 28006-Madrid, Spain
| | - Diego García-Puentes
- Instituto de Química Orgánica General , Consejo Superior de Investigaciones Científicas (IQOG-CSIC), Juan de la Cierva 3, 28006-Madrid, Spain
| | - Elena Sáez
- CAI de RMN y RSE, Universidad Complutense , 28040-Madrid, Spain
| | - Cristina Vicent
- Instituto de Química Orgánica General , Consejo Superior de Investigaciones Científicas (IQOG-CSIC), Juan de la Cierva 3, 28006-Madrid, Spain
| | - Roberto Fernández de la Pradilla
- Instituto de Química Orgánica General , Consejo Superior de Investigaciones Científicas (IQOG-CSIC), Juan de la Cierva 3, 28006-Madrid, Spain.,Centro de Innovación en Química Avanzada (ORFEO-CINQA) , Madrid, Spain
| | - Alma Viso
- Instituto de Química Orgánica General , Consejo Superior de Investigaciones Científicas (IQOG-CSIC), Juan de la Cierva 3, 28006-Madrid, Spain.,Centro de Innovación en Química Avanzada (ORFEO-CINQA) , Madrid, Spain
| | - María C de la Torre
- Instituto de Química Orgánica General , Consejo Superior de Investigaciones Científicas (IQOG-CSIC), Juan de la Cierva 3, 28006-Madrid, Spain.,Centro de Innovación en Química Avanzada (ORFEO-CINQA) , Madrid, Spain
| | - Miguel A Sierra
- Departamento de Química Orgánica I, Facultad de Química, Universidad Complutense , 28040-Madrid, Spain.,Centro de Innovación en Química Avanzada (ORFEO-CINQA) , Madrid, Spain
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9
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Abramov PA, Vicent C, Kompankov NB, Laricheva JA, Sokolov MN. Unique solubility of polyoxoniobate salts in methanol: coordination to cations and POM methylation. RSC Adv 2016. [DOI: 10.1039/c5ra23918d] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
In methanolic solutions of A4[{LM′}2M6O19] ({LM′} = {Cp*Rh}2+, {Cp*Ir}2+, {(C6H6)Ru}2+; M = Nb, Ta; A = Na, K) formation of methoxo complexes [{LM′}2M6O19−n(OMe)n] (n = 1–3) and coordination of CH3OH to A+ take place.
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Affiliation(s)
- P. A. Abramov
- Nikolaev Institute of Inorganic Chemistry SB RAS
- Novosibirsk
- Russia
- Novosibirsk State University
- Novosibirsk
| | - C. Vicent
- Serveis Centrals d’Instrumentació Científica
- Universitat Jaume I
- 12071 Castelló
- Spain
| | - N. B. Kompankov
- Nikolaev Institute of Inorganic Chemistry SB RAS
- Novosibirsk
- Russia
| | - J. A. Laricheva
- Nikolaev Institute of Inorganic Chemistry SB RAS
- Novosibirsk
- Russia
| | - M. N. Sokolov
- Nikolaev Institute of Inorganic Chemistry SB RAS
- Novosibirsk
- Russia
- Novosibirsk State University
- Novosibirsk
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10
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Blázquez-Sánchez MT, Marcelo F, Fernández-Alonso MDC, del Villar-Guerra R, Samadi A, Cañada FJ, Jiménez-Barbero J, Vicent C. D- andL-Mannose-Containingglyco-Oligoamides Show Distinct Recognition Properties When Interacting with DNA. European J Org Chem 2015. [DOI: 10.1002/ejoc.201500740] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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11
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Abstract
Coordination of {Pt(OH)2}2+ fragments to Lindqvist type hexaniobates
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Affiliation(s)
- P. A. Abramov
- Nikolaev Institute of Inorganic Chemistry Sb RAS
- Novosibirsk
- Russia
- Novosibirsk State University
- Novosibirsk
| | - C. Vicent
- Serveis Centrals d'Instrumentació Científica
- Universitat Jaume I
- 12071 Castelló
- Spain
| | - N. B. Kompankov
- Nikolaev Institute of Inorganic Chemistry Sb RAS
- Novosibirsk
- Russia
| | - A. L. Gushchin
- Nikolaev Institute of Inorganic Chemistry Sb RAS
- Novosibirsk
- Russia
- Novosibirsk State University
- Novosibirsk
| | - M. N. Sokolov
- Nikolaev Institute of Inorganic Chemistry Sb RAS
- Novosibirsk
- Russia
- Novosibirsk State University
- Novosibirsk
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12
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Abramov PA, Sokolov MN, Virovets AV, Floquet S, Haouas M, Taulelle F, Cadot E, Vicent C, Fedin VP. Grafting {Cp*Rh}2+ on the surface of Nb and Ta Lindqvist-type POM. Dalton Trans 2015; 44:2234-9. [DOI: 10.1039/c4dt03339f] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Structure of a new hybrid organometallic-pom complex [trans-{Cp*Rh}2M6O19]4− (M = Nb, Ta).
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Affiliation(s)
- P. A. Abramov
- Nikolaev Institute of Inorganic Chemistry SB RAS
- Novosibirsk
- Russia
- Novosibirsk State University
- Novosibirsk
| | - M. N. Sokolov
- Nikolaev Institute of Inorganic Chemistry SB RAS
- Novosibirsk
- Russia
- Novosibirsk State University
- Novosibirsk
| | - A. V. Virovets
- Nikolaev Institute of Inorganic Chemistry SB RAS
- Novosibirsk
- Russia
| | - S. Floquet
- Lavoisier Institute of Versailles
- UMR CNRS 8180
- University of Versailles Saint-Quentin en Yvelines
- 78035 Versailles
- France
| | - M. Haouas
- Lavoisier Institute of Versailles
- UMR CNRS 8180
- University of Versailles Saint-Quentin en Yvelines
- 78035 Versailles
- France
| | - F. Taulelle
- Lavoisier Institute of Versailles
- UMR CNRS 8180
- University of Versailles Saint-Quentin en Yvelines
- 78035 Versailles
- France
| | - E. Cadot
- Lavoisier Institute of Versailles
- UMR CNRS 8180
- University of Versailles Saint-Quentin en Yvelines
- 78035 Versailles
- France
| | - C. Vicent
- Serveis Centrals d'Instrumentació Científica
- Universitat Jaume I
- 12071 Castelló
- Spain
| | - V. P. Fedin
- Nikolaev Institute of Inorganic Chemistry SB RAS
- Novosibirsk
- Russia
- Novosibirsk State University
- Novosibirsk
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13
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Abramov PA, Sokolov MN, Floquet S, Haouas M, Taulelle F, Cadot E, Peresypkina EV, Virovets AV, Vicent C, Kompankov NB, Zhdanov AA, Shuvaeva OV, Fedin VP. Coordination-Induced Condensation of [Ta6O19]8–: Synthesis and Structure of [{(C6H6)Ru}2Ta6O19]4– and [{(C6H6)RuTa6O18}2(μ-O)]10−. Inorg Chem 2014; 53:12791-8. [DOI: 10.1021/ic501622t] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- P. A. Abramov
- Nikolaev Institute of Inorganic Chemistry SB RAS, 3, Akad. Lavrentiev Avenue, Novosibirsk 630090, Russia
- Novosibirsk State University, Novosibirsk 630090, Russia
| | - M. N. Sokolov
- Nikolaev Institute of Inorganic Chemistry SB RAS, 3, Akad. Lavrentiev Avenue, Novosibirsk 630090, Russia
- Novosibirsk State University, Novosibirsk 630090, Russia
| | - S. Floquet
- Institut Lavoisier de Versailles, UMR 8180, University of Versailles Saint-Quentin en Yvelines, 45 Avenue des Etats-Unis, 78035 Versailles, France
| | - M. Haouas
- Institut Lavoisier de Versailles, UMR 8180, University of Versailles Saint-Quentin en Yvelines, 45 Avenue des Etats-Unis, 78035 Versailles, France
| | - F. Taulelle
- Institut Lavoisier de Versailles, UMR 8180, University of Versailles Saint-Quentin en Yvelines, 45 Avenue des Etats-Unis, 78035 Versailles, France
| | - E. Cadot
- Institut Lavoisier de Versailles, UMR 8180, University of Versailles Saint-Quentin en Yvelines, 45 Avenue des Etats-Unis, 78035 Versailles, France
| | - E. V. Peresypkina
- Nikolaev Institute of Inorganic Chemistry SB RAS, 3, Akad. Lavrentiev Avenue, Novosibirsk 630090, Russia
- Novosibirsk State University, Novosibirsk 630090, Russia
| | - A. V. Virovets
- Nikolaev Institute of Inorganic Chemistry SB RAS, 3, Akad. Lavrentiev Avenue, Novosibirsk 630090, Russia
- Novosibirsk State University, Novosibirsk 630090, Russia
| | - C. Vicent
- Serveis Centrals d’Instrumentació Científica, Universitat Jaume I, Av. Sos Baynat s/n, 12071 Castelló, Spain
| | - N. B. Kompankov
- Nikolaev Institute of Inorganic Chemistry SB RAS, 3, Akad. Lavrentiev Avenue, Novosibirsk 630090, Russia
| | - A. A. Zhdanov
- Nikolaev Institute of Inorganic Chemistry SB RAS, 3, Akad. Lavrentiev Avenue, Novosibirsk 630090, Russia
- Novosibirsk State University, Novosibirsk 630090, Russia
| | - O. V. Shuvaeva
- Nikolaev Institute of Inorganic Chemistry SB RAS, 3, Akad. Lavrentiev Avenue, Novosibirsk 630090, Russia
| | - V. P. Fedin
- Nikolaev Institute of Inorganic Chemistry SB RAS, 3, Akad. Lavrentiev Avenue, Novosibirsk 630090, Russia
- Novosibirsk State University, Novosibirsk 630090, Russia
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Abramov P, Sokolov M, Virovets A, Mirzaeva I, Kozlova S, Vicent C, Fedin V. Reductive selenidation of [Cp*MoO2Cl]: Synthesis, structure and bonding in new binuclear and trinuclear clusters. J Organomet Chem 2014. [DOI: 10.1016/j.jorganchem.2014.08.001] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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15
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Blázquez-Sánchez MT, Marcelo F, Fernández-Alonso MC, Poveda A, Jiménez-Barbero J, Vicent C. Cooperative hydrogen bonding in glyco-oligoamides: DNA minor groove binders in aqueous media. Chemistry 2014; 20:17640-52. [PMID: 25359390 DOI: 10.1002/chem.201403911] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2014] [Indexed: 12/26/2022]
Abstract
A strategy to create cooperative hydrogen-bonding centers by using strong and directional intramolecular hydrogen-bonding motifs that can survive in aqueous media is presented. In particular, glyco-oligoamides, a family of DNA minor groove binders, with cooperative and non-cooperative hydrogen-bonding donor centers in the carbohydrate residues have been designed, synthesized, and studied by means of NMR spectroscopy and molecular modeling methods. Indeed, two different sugar moieties, namely, β-D-Man-Py-γ-Py-Ind (1; Ind=indole, Man=mannose, Py=pyrrole) and β-D-Tal-Py-γ-Py-Ind (2; Tal=talose), were chosen according to our design. These sugar molecules should present one- or two-directional intramolecular hydrogen bonds. The challenge has been to study the conformation of the glyco-oligoamides at low temperature in physiological media by detecting the exchangeable protons (amide NH and OH resonances) by means of NMR spectroscopic analysis. In addition, two more glyco-oligoamides with non-cooperative hydrogen-bonding centers, that is, β-D-Glc-Py-γ-Py-Ind (3; Glc=glucose), β-D-Gal-Py-γ-Py-Ind (4; Gal=galactose), and the model compounds β-D-Man-Py-NHAc (5) and β-D-Tal-Py-NHAc (6) were synthesized and studied for comparison. We have demonstrated the existence of directional intramolecular hydrogen bonds in 1 and 2 in aqueous media. The unexpected differences in terms of stabilization of the intramolecular hydrogen bonds in 1 and 2 relative to 5 and 6 promoted us to evaluate the influence of CH-π interactions on the establishment of intramolecular hydrogen bonds by using computational methods. Initial binding studies of 1 and 2 with calf-thymus DNA and poly(dA-dT)2 by NMR spectroscopic analysis and molecular dynamics simulations were also carried out. Both new sugar-oligoamides are bound in the minor groove of DNA, thus keeping a stable hairpin structure, as in the free state, in which both intramolecular hydrogen-bonding and CH-π interactions are present.
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Taladriz-Sender A, Vicent C. Synthesis of cationic glyco-oligoamide for DNA–carbohydrate interaction studies. Supramol Chem 2013. [DOI: 10.1080/10610278.2013.814776] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Andrea Taladriz-Sender
- Departamento de Síntesis, Estructura y Propiedades de los Compuestos Orgánicos (SEPCO), Instituto de Química Orgánica General, CSIC, C/Juan de la Cierva 3, 28006 Madrid, Spain
| | - Cristina Vicent
- Departamento de Síntesis, Estructura y Propiedades de los Compuestos Orgánicos (SEPCO), Instituto de Química Orgánica General, CSIC, C/Juan de la Cierva 3, 28006 Madrid, Spain
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Sokolov MN, Adonin SA, Mainichev DA, Sinkevich PL, Vicent C, Kompankov NB, Gushchin AL, Nadolinny V, Fedin VP. New {RuNO} Polyoxometalate [PW11O39RuII(NO)]4-: Synthesis and Reactivity. Inorg Chem 2013; 52:9675-82. [DOI: 10.1021/ic401492q] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Maxim N. Sokolov
- Nikolaev Institute of Inorganic Chemistry, SB RAS, 630090, 3 Pr. Lavrentieva, Novosibirsk, Russia
- Novosibirsk State University, 630090, 2 Ul. Pirogova, Novosibirsk, Russia
| | - Sergey A. Adonin
- Nikolaev Institute of Inorganic Chemistry, SB RAS, 630090, 3 Pr. Lavrentieva, Novosibirsk, Russia
- Novosibirsk State University, 630090, 2 Ul. Pirogova, Novosibirsk, Russia
| | - Dmitry A. Mainichev
- Nikolaev Institute of Inorganic Chemistry, SB RAS, 630090, 3 Pr. Lavrentieva, Novosibirsk, Russia
| | - Pavel L. Sinkevich
- Novosibirsk State University, 630090, 2 Ul. Pirogova, Novosibirsk, Russia
| | - C. Vicent
- Serveis Centrals d’Instrumentació
Cientifica, Universitat Jaume I, Avda.
Sos Baynat s/n, E-12071 Castelló, Spain
| | - Nikolay B. Kompankov
- Nikolaev Institute of Inorganic Chemistry, SB RAS, 630090, 3 Pr. Lavrentieva, Novosibirsk, Russia
| | - Artem L. Gushchin
- Nikolaev Institute of Inorganic Chemistry, SB RAS, 630090, 3 Pr. Lavrentieva, Novosibirsk, Russia
- Novosibirsk State University, 630090, 2 Ul. Pirogova, Novosibirsk, Russia
| | - V.A. Nadolinny
- Nikolaev Institute of Inorganic Chemistry, SB RAS, 630090, 3 Pr. Lavrentieva, Novosibirsk, Russia
| | - Vladimir P. Fedin
- Nikolaev Institute of Inorganic Chemistry, SB RAS, 630090, 3 Pr. Lavrentieva, Novosibirsk, Russia
- Novosibirsk State University, 630090, 2 Ul. Pirogova, Novosibirsk, Russia
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18
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Affiliation(s)
- Concepción Badı́a
- Departamento de Sı́ntesis,
Estructura y Propiedades de los Compuestos Orgánicos, Instituto de Quı́mica Orgánica General,
CSIC, c/Juan de la Cierva 3, 28006 Madrid, Spain
| | - Florence Souard
- Departamento de Sı́ntesis,
Estructura y Propiedades de los Compuestos Orgánicos, Instituto de Quı́mica Orgánica General,
CSIC, c/Juan de la Cierva 3, 28006 Madrid, Spain
| | - Cristina Vicent
- Departamento de Sı́ntesis,
Estructura y Propiedades de los Compuestos Orgánicos, Instituto de Quı́mica Orgánica General,
CSIC, c/Juan de la Cierva 3, 28006 Madrid, Spain
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Korenev VS, Abramov PA, Vicent C, Mainichev DA, Floquet S, Cadot E, Sokolov MN, Fedin VP. Trapping {BW12}2 tungstoborate: synthesis and crystal structure of hybrid [{(H2BW12O42)2O}{Mo6O6S6(OH)4(H2O)2}]14− anion. Dalton Trans 2012; 41:14484-6. [DOI: 10.1039/c2dt31512b] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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20
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Abramov P, Sokolov M, Peresypkina E, Mirzaeva I, Moroz N, Vicent C, Hernandez-Molina R, Goya M, Arévalo M, Fedin V. Oxoselenide triangular molybdenum clusters: Synthesis and characterization of [Mo3SeO3(acac)3(py)3]PF6. Inorganica Chim Acta 2011. [DOI: 10.1016/j.ica.2011.05.007] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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21
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Beltrán TF, Basallote MG, Fernández-Trujillo MJ, Pino JA, Corao C, Llusar R, Sokolov M, Vicent C. Structure elucidation and aqueous speciation of water-soluble M3S 4M= (Mo,W) clusters bearing hydroxypropyl diphosphine ligands. Acta Crystallogr A 2011. [DOI: 10.1107/s010876731108175x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
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22
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Sorribes I, Llusar R, Vicent C, Lloret F, Polo V. Structural characterization of Mo 3Fe(NO)S 4cubane-type clusters with different electron populations. Acta Crystallogr A 2011. [DOI: 10.1107/s0108767311085187] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
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23
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Patrier L, Dupuis AM, Granger Vallee A, Chenine L, Leray-Moragues H, Chalabi L, Morena M, Canaud B, Cristol JP, Akizawa T, Fukuhara S, Fukagawa M, Onishi Y, Yamaguchi T, Hasegawa T, Kido R, Kurokawa K, Vega O, Usvyat L, Rosales L, Thijssen S, Levin N, Kotanko P, An WS, Son YK, Kim SE, Kim KH, Han JY, Bae HR, Park Y, Passlick-Deetjen J, Kroczak M, Buschges-Seraphin B, Covic AC, Ponce P, Marzell B, Schulze F, de Francisco ALM, Esteve V, Junque A, Duarte V, Fulquet M, Saurina A, Pou M, Salas K, Macias J, Sanchez Ramos A, Lavado M, Ramirez de Arellano M, Del Valle E, Negri AL, Ryba J, Peri P, Puddu M, Bravo M, Rosa Diez G, Crucelegui S, Sintado L, Bevione PE, Canalis M, Fradinger E, Marini A, Marelli C, Schiller A, Covic A, Schiller O, Roman V, Andrei C, Berca S, Ivacson Z, Anton C, Raletchi C, Sezer S, Tutal E, Bal Z, Erkmen Uyar M, Ozdemir Acar FN, Lessard M, Ouimet D, Leblanc M, Nadeau-Fredette AC, Bell R, Lafrance JP, Pichette V, Vallee M, Solak Y, Atalay H, Torun B, Tonbul Z, Lacueva J, Santamaria C, Bordils A, Vicent C, Fernandez M, Casado M, Karakan S, Sezer S, Tutal E, Ozdemir Acar N, Ishimura E, Okuno S, Tsuboniwa N, Ichii M, Yamakawa T, Shoji S, Inaba M, Lomonte C, Derosa C, Libutti P, Teutonico A, Chimienti D, Antonelli M, Bruno A, Cocola S, Basile C, Petrucci I, Giovannini L, Samoni S, Colombini E, Cupisti A, Meola M, Stancu S, Zugravu A, Stanescu B, Barbulescu C, Anghel C, Cinca S, Petrescu L, Mircescu G, Hung PH, Chiang PC, Jong IC, Hsiao CY, Hung KY, Tentori F, Karaboyas A, Sen A, Hecking M, Bommer J, Depner T, Akiba T, Port FK, Robinson BM, Basile C, Libutti P, Di Turo AL, Vernaglione L, Casucci F, Losurdo N, Teutonico A, Lomonte C, Sanadgol H, Baiani M, Mohanna M, Basile C, Libutti P, Di Turo AL, Casucci F, Losurdo N, Teutonico A, Vernaglione L, Lomonte C, Negri AL, Del Valle EE, Zanchetta MB, Nobaru M, Silveira F, Puddu M, Barone R, Bogado CE, Zanchetta JR, Mlot-Michalska M, Grzegorzewska AE, Fedak D, Kuzniewski M, Janda K, Krzanowski M, Pawlica D, Kusnierz-Cabala B, Solnica B, Sulowicz W, Novotna H, vara F, Polakovic V, Sedlackova E, Marzell B, Kaufmann P, Merello JI, Mora J, Crespo A, Arens HJ, Passlick-Deetjen J, Takahashi T, Ogawa H, Kitajima Y, Sato Y, Cayabyab S, Mallari J, Kikuchi H, Nakayama H, Saito N, Shimada H, Miyazaki S, Sakai S, Suzuki M, Gonzalez E, Torregrosa V, Cannata J, Gonzalez MT, Arenas MD, Montenegro J, Rios F, Mora J, Moreno R, Muniz ML, Copley JB, Smyth M, Poole L, Wilson R. Bone disease in CKD 5D. Clin Kidney J 2011. [DOI: 10.1093/ndtplus/4.s2.40] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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24
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Fan E, Yang J, Geib SJ, Vicent C, Garcia-Tellado F, Tecilla P, Hamilton AD. Supramolecular self-assembly based on directed hydrogen bonding. ACTA ACUST UNITED AC 2011. [DOI: 10.1002/masy.19940770124] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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25
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Peñalver P, Marcelo F, Jiménez-Barbero J, Vicent C. Carbohydrate recognition at the minor-groove of the self-complementary duplex d(CGCGAATTCGCG)2 by a synthetic glyco-oligoamide. Chemistry 2011; 17:4561-70. [PMID: 21259350 DOI: 10.1002/chem.201003027] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2010] [Indexed: 12/20/2022]
Abstract
The structure of a neutral glyco-conjugate β-Gal-Py-γ-Py-Ind (1), designed as a probe for analyzing sugar-DNA interactions, when bound to a self-complementary oligonucleotide duplex d(CGCG AATT CGCG)(2) has been deduced by employing (1)H NMR techniques. Analysis of the formed 1:1 complex demonstrated that the glycol ligand is bound in a hairpin-like conformation in which both pyrrole amino acid moieties are stacked, whereas the indole and the sugar residues are spatially close. The binding site is defined by the minor groove formed by the -AATT- stretch. In particular, the -Py-γ-Py- region of the ligand is sited near the A5-A6 oligonucleotide residues, whereas the indole and the sugar rings are next to the T7-T8 base pairs. More relevant, the existence of a variety of intermolecular NOE correlations permitted the close proximity of the sugar to the minor groove to be assessed, thus showing that the binding of the glycoconjugate at the minor groove is the origin of the specificity of the glycoconjugate-DNA interaction. The experimental NMR data have been combined with restrained and unrestrained molecular dynamics calculations, to provide the 3D structure of the complex.
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Affiliation(s)
- Pablo Peñalver
- Departamento de Síntesis, Estructura y Propiedades de Compuestos Orgánicos (SEPCO), Instituto de Química Orgánica general CSIC, c/Juan de la Cierva 3, 28006, Madrid, Spain
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Ferrand Y, Klein E, Barwell N, Crump M, Jiménez-Barbero J, Vicent C, Boons GJ, Ingale S, Davis A. Innentitelbild: A Synthetic Lectin for O-Linked β- N-Acetylglucosamine (Angew. Chem. 10/2009). Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200990043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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27
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Ferrand Y, Klein E, Barwell N, Crump M, Jiménez-Barbero J, Vicent C, Boons GJ, Ingale S, Davis A. A Synthetic Lectin for O-Linked β-N-Acetylglucosamine. Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200804905] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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28
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Ferrand Y, Klein E, Barwell N, Crump M, Jiménez-Barbero J, Vicent C, Boons GJ, Ingale S, Davis A. Inside Cover: A Synthetic Lectin for O-Linked β- N-Acetylglucosamine (Angew. Chem. Int. Ed. 10/2009). Angew Chem Int Ed Engl 2009. [DOI: 10.1002/anie.200990042] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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29
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Affiliation(s)
- M.A. Verdugo
- Institute on Community Integration (INICO), University of Salamanca, Salamanca, Spain
| | - F.B. Jordán de Urríes
- Institute on Community Integration (INICO), University of Salamanca, Salamanca, Spain
| | - C. Vicent
- Institute on Community Integration (INICO), University of Salamanca, Salamanca, Spain
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30
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Ferrand Y, Klein E, Barwell NP, Crump MP, Jiménez-Barbero J, Vicent C, Boons GJ, Ingale S, Davis AP. A synthetic lectin for O-linked beta-N-acetylglucosamine. Angew Chem Int Ed Engl 2009; 48:1775-9. [PMID: 19072969 PMCID: PMC2835298 DOI: 10.1002/anie.200804905] [Citation(s) in RCA: 129] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Changing employment: Receptor 1 binds beta-N-acetylglucosaminyl (beta-GlcNAc) up to 100 times more strongly than it does glucose. This synthetic lectin shows affinities similar to wheat germ agglutinin (WGA), a natural lectin used to bind GlcNAc. Remarkably, 1 is more selective than WGA. It favors especially the glycoside unit in glycopeptide 2, a model of the serine-O-GlcNAc posttranslational protein modification.
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Affiliation(s)
- Yann Ferrand
- Dr. Y. Ferrand, Dr. E. Klein, N. P. Barwell, Dr. M. P. Crump, Prof. A. P. Davis, School of Chemistry, University of Bristol, Cantock’s Close, Bristol, BS8 1TS (UK), Fax: (+) 44 117 9298611,
- Prof. J. Jiménez-Barbero, Centro de Investigaciones Biológicas, CSIC, c/ Ramiro de Maeztu 9, Madrid 28040 (Spain)
- Dr. C. Vicent, Instituto de Química Organica, CSIC, c/ Juan de la Cierva 3, Madrid 28006 (Spain)
- Prof. G.-J. Boons, S. Ingale, Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 (USA)
| | - Emmanuel Klein
- Dr. Y. Ferrand, Dr. E. Klein, N. P. Barwell, Dr. M. P. Crump, Prof. A. P. Davis, School of Chemistry, University of Bristol, Cantock’s Close, Bristol, BS8 1TS (UK), Fax: (+) 44 117 9298611,
- Prof. J. Jiménez-Barbero, Centro de Investigaciones Biológicas, CSIC, c/ Ramiro de Maeztu 9, Madrid 28040 (Spain)
- Dr. C. Vicent, Instituto de Química Organica, CSIC, c/ Juan de la Cierva 3, Madrid 28006 (Spain)
- Prof. G.-J. Boons, S. Ingale, Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 (USA)
| | - Nicholas P. Barwell
- Dr. Y. Ferrand, Dr. E. Klein, N. P. Barwell, Dr. M. P. Crump, Prof. A. P. Davis, School of Chemistry, University of Bristol, Cantock’s Close, Bristol, BS8 1TS (UK), Fax: (+) 44 117 9298611,
- Prof. J. Jiménez-Barbero, Centro de Investigaciones Biológicas, CSIC, c/ Ramiro de Maeztu 9, Madrid 28040 (Spain)
- Dr. C. Vicent, Instituto de Química Organica, CSIC, c/ Juan de la Cierva 3, Madrid 28006 (Spain)
- Prof. G.-J. Boons, S. Ingale, Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 (USA)
| | - Matthew P. Crump
- Dr. Y. Ferrand, Dr. E. Klein, N. P. Barwell, Dr. M. P. Crump, Prof. A. P. Davis, School of Chemistry, University of Bristol, Cantock’s Close, Bristol, BS8 1TS (UK), Fax: (+) 44 117 9298611,
- Prof. J. Jiménez-Barbero, Centro de Investigaciones Biológicas, CSIC, c/ Ramiro de Maeztu 9, Madrid 28040 (Spain)
- Dr. C. Vicent, Instituto de Química Organica, CSIC, c/ Juan de la Cierva 3, Madrid 28006 (Spain)
- Prof. G.-J. Boons, S. Ingale, Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 (USA)
| | - Jesus Jiménez-Barbero
- Dr. Y. Ferrand, Dr. E. Klein, N. P. Barwell, Dr. M. P. Crump, Prof. A. P. Davis, School of Chemistry, University of Bristol, Cantock’s Close, Bristol, BS8 1TS (UK), Fax: (+) 44 117 9298611,
- Prof. J. Jiménez-Barbero, Centro de Investigaciones Biológicas, CSIC, c/ Ramiro de Maeztu 9, Madrid 28040 (Spain)
- Dr. C. Vicent, Instituto de Química Organica, CSIC, c/ Juan de la Cierva 3, Madrid 28006 (Spain)
- Prof. G.-J. Boons, S. Ingale, Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 (USA)
| | - Cristina Vicent
- Dr. Y. Ferrand, Dr. E. Klein, N. P. Barwell, Dr. M. P. Crump, Prof. A. P. Davis, School of Chemistry, University of Bristol, Cantock’s Close, Bristol, BS8 1TS (UK), Fax: (+) 44 117 9298611,
- Prof. J. Jiménez-Barbero, Centro de Investigaciones Biológicas, CSIC, c/ Ramiro de Maeztu 9, Madrid 28040 (Spain)
- Dr. C. Vicent, Instituto de Química Organica, CSIC, c/ Juan de la Cierva 3, Madrid 28006 (Spain)
- Prof. G.-J. Boons, S. Ingale, Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 (USA)
| | - Geert-Jan Boons
- Dr. Y. Ferrand, Dr. E. Klein, N. P. Barwell, Dr. M. P. Crump, Prof. A. P. Davis, School of Chemistry, University of Bristol, Cantock’s Close, Bristol, BS8 1TS (UK), Fax: (+) 44 117 9298611,
- Prof. J. Jiménez-Barbero, Centro de Investigaciones Biológicas, CSIC, c/ Ramiro de Maeztu 9, Madrid 28040 (Spain)
- Dr. C. Vicent, Instituto de Química Organica, CSIC, c/ Juan de la Cierva 3, Madrid 28006 (Spain)
- Prof. G.-J. Boons, S. Ingale, Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 (USA)
| | - Sampat Ingale
- Dr. Y. Ferrand, Dr. E. Klein, N. P. Barwell, Dr. M. P. Crump, Prof. A. P. Davis, School of Chemistry, University of Bristol, Cantock’s Close, Bristol, BS8 1TS (UK), Fax: (+) 44 117 9298611,
- Prof. J. Jiménez-Barbero, Centro de Investigaciones Biológicas, CSIC, c/ Ramiro de Maeztu 9, Madrid 28040 (Spain)
- Dr. C. Vicent, Instituto de Química Organica, CSIC, c/ Juan de la Cierva 3, Madrid 28006 (Spain)
- Prof. G.-J. Boons, S. Ingale, Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 (USA)
| | - Anthony P. Davis
- Dr. Y. Ferrand, Dr. E. Klein, N. P. Barwell, Dr. M. P. Crump, Prof. A. P. Davis, School of Chemistry, University of Bristol, Cantock’s Close, Bristol, BS8 1TS (UK), Fax: (+) 44 117 9298611,
- Prof. J. Jiménez-Barbero, Centro de Investigaciones Biológicas, CSIC, c/ Ramiro de Maeztu 9, Madrid 28040 (Spain)
- Dr. C. Vicent, Instituto de Química Organica, CSIC, c/ Juan de la Cierva 3, Madrid 28006 (Spain)
- Prof. G.-J. Boons, S. Ingale, Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602 (USA)
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Verdugo M, Martín-Ingelmo R, Jordán de Urríes F, Vicent C, Sánchez M. Impact on quality of life and self-determination of a national program for increasing supported employment in Europe. Journal of Vocational Rehabilitation 2009. [DOI: 10.3233/jvr-2009-0473] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Affiliation(s)
- M.A. Verdugo
- Institute on Community Integration (INICO), University of Salamanca, Salamanca, Spain
| | - R. Martín-Ingelmo
- Institute on Community Integration (INICO), University of Salamanca, Salamanca, Spain
| | - F.B. Jordán de Urríes
- Institute on Community Integration (INICO), University of Salamanca, Salamanca, Spain
| | - C. Vicent
- Institute on Community Integration (INICO), University of Salamanca, Salamanca, Spain
| | - M.C. Sánchez
- Institute on Community Integration (INICO), University of Salamanca, Salamanca, Spain
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Peñalver P, Abdelouahid S, Bosch P, Hunter CA, Vicent C. A Neutral DNA Sequence-Selective Vector for Interaction Studies: Fluorescence Binding Experiments Directed Towards a Carbohydrate-DNA Carrier. European J Org Chem 2008. [DOI: 10.1002/ejoc.200701123] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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Souard F, Muñoz E, Peñalver P, Badía C, del Villar-Guerra R, Asensio J, Jiménez-Barbero J, Vicent C. Sugar–Oligoamides: Bound-State Conformation and DNA Minor-Groove-Binding Description by TR-NOESY and Differential-Frequency Saturation-Transfer-Difference Experiments. Chemistry 2008; 14:2435-42. [DOI: 10.1002/chem.200701103] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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34
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Gushchin AL, Kovalenko KA, Sokolov MN, Naumov DY, Zakharchuk NF, Vicent C, Fedin VP. Cuboidal oxalate cluster complexes with the Mo3CuQ4 5+ cluster core (Q = S or Se): synthesis, structure, and electrochemical properties. Russ Chem Bull 2007. [DOI: 10.1007/s11172-007-0264-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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35
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Martin JN, Muñoz EM, Schwergold C, Souard F, Asensio JL, Jiménez-Barbero J, Cañada J, Vicent C. Carbohydrate-based DNA ligands: sugar-oligoamides as a tool to study carbohydrate-nucleic acid interactions. J Am Chem Soc 2005; 127:9518-33. [PMID: 15984879 DOI: 10.1021/ja050794n] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Sugar-oligoamides have been designed and synthesized as structurally simple carbohydrate-based ligands to study carbohydrate-DNA interactions. The general design of the ligands 1-3 has been done as to favor the bound conformation of Distamycin-type gamma-linked covalent dimers which is a hairpin conformation. Indeed, NMR analysis of the sugar-oligoamides in the free state has indicated the presence of a percentage of a hairpin conformation in aqueous solution. The DNA binding activity of compounds 1-3 was confirmed by calf thymus DNA (ct-DNA) NMR titration. Interestingly, the binding of the different sugar-oligoamides seems to be modulated by the sugar configuration. Semiquantitative structural information about the DNA ligand complexes has been derived from NMR data. A competition experiment with Netropsin suggested that the sugar-oligoamide 3 bind to DNA in the minor groove. The NMR titrations of 1-3 with poly(dA-dT) and poly(dG-dC) suggested preferential binding to the ATAT sequence. TR-NOE NMR experiments for the sugar-oligoamide 3-ct-DNA complex both in D(2)O and H(2)O have confirmed the complex formation and given information on the conformation of the ligand in the bound state. The data confirmed that the sugar-oligoamide ligand is a hairpin in the bound state. Even more relevant to our goal, structural information on the conformation around the N-glycosidic linkage has been accessed. Thus, the sugar asymmetric centers pointing to the NH-amide and N-methyl rims of the molecule have been characterized.
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Affiliation(s)
- Jason N Martin
- Instituto de Química Orgánica, CSIC, c/ Juan de la Cierva 3, Madrid 28006, Spain
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Sokolov M, Esparza P, Hernandez-Molina R, Platas JG, Mederos A, Gavin JA, Llusar R, Vicent C. Preparation and Properties of the Full Series of Cuboidal Clusters [MoxW4-xSe4(H2O)12]n+ (n = 4−6) and Their Derivatives. Inorg Chem 2005; 44:1132-41. [PMID: 15859295 DOI: 10.1021/ic049298a] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Hydrothermal reactions between incomplete cuboidal cluster aqua complexes [M3Q4(H2O)9]4+ and M(CO)6 (M = Mo, W; Q = S, Se) offer easy access to the corresponding cuboidal clusters M4Q4. The complete series of homometal and mixed Mo/W clusters [Mo(x)W4-xQ4(H2O)12]n+ (x = 0-4, n = 4-6) has been prepared. Upon oxidation of the mixed-metal clusters, it is the W atom which is lost, allowing selective preparation of new trinuclear clusters [Mo2WSe4(H2O)9]4+ and [MoW2Se4(H2O)9]4+. The aqua complexes were converted by ligand exchange reactions into dithiophosphato and thiocyanato complexes, and crystal structures of [W4S4((EtO)2PS2)6], [MoW3S4((EtO)2PS2)6], [Mo4Se4((EtO)2PS2)6], [W4Se4((i-PrO)2PS2)6], and (NH4)6[W4Se4(NCS)12]-4H20 were determined. Cyclic voltammetry was performed on [Mo(x)W4-xCO4(H2O)12]n+, showing reversible redox waves 6+/5+ and 5+/4+. The lower oxidation states are more difficult to access as the number of W atoms increases. The [Mo2WSe4(H2O)9]4+ and [MoW2Se4(H2O)9]4+ species were derivatized into [Mo2WSe4(acac)3(py)3]+ and [MoW2Se4(acac)3(py)3]+, which were also studied by CV. When appropriate, the products were also characterized by FAB-MS and NMR (31P, 1H) data.
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Affiliation(s)
- M Sokolov
- A V Nikolayev Institute of Inorganic Chemistry, Novosibirsk 630090, Russia.
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Mitkina TV, Naumov DY, Gerasko OA, Dolgushin FM, Vicent C, Llusar R, Sokolov MN, Fedin VP. Inclusion of nickel(II) and copper(II) complexes with aliphatic polyamines in cucurbit[8]uril. Russ Chem Bull 2004. [DOI: 10.1007/s11172-005-0148-0] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Vicente V, Martin J, Jiménez-Barbero J, Chiara JL, Vicent C. Hydrogen-Bonding Cooperativity: Using an Intramolecular Hydrogen Bond To Design a Carbohydrate Derivative with a Cooperative Hydrogen-Bond Donor Centre. Chemistry 2004; 10:4240-51. [PMID: 15352107 DOI: 10.1002/chem.200400042] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Neighbouring groups can be strategically located to polarise HO.OH intramolecular hydrogen bonds in an intended direction. A group with a unique hydrogen-bond donor or acceptor character, located at hydrogen-bonding distance to a particular OH group, has been used to initiate the hydrogen-bond network and to polarise a HO.OH hydrogen bond in a predicted direction. This enhanced the donor character of a particular OH group and made it a cooperative hydrogen-bond centre. We have proved that a five-membered-ring intramolecular hydrogen bond established between an amide NH group and a hydroxy group (1,2-e,a), which is additionally located in a 1,3-cis-diaxial relationship to a second hydroxy group, can be used to select a unique direction on the six-membered-ring intramolecular hydrogen bond between the two axial OH groups, so that one of them behaves as an efficient cooperative donor. Talose derivative 3 was designed and synthesised to prove this hydrogen-bonding network by NMR spectroscopy, and the mannopyranoside derivatives 1 and 2 were used as models to demonstrate the presence in solution of the 1,2-(e,a)/five-membered-ring intramolecular hydrogen bond. Once a well-defined hydrogen-bond is formed between the OH and the amido groups of a pyranose ring, these hydrogen-bonding groups no longer act as independent hydrogen-bonding centres, but as hydrogen-bonding arrays. This introduces a new perspective on the properties of carbohydrate OH groups and it is important for the de novo design of molecular recognition processes, at least in nonpolar media. Carbohydrates 1-3 have shown to be efficient phosphate binders in nonpolar solvents owing to the presence of cooperative hydroxy centres in the molecule.
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Affiliation(s)
- Virginie Vicente
- Instituto de Química Orgánica General, CSIC, Juan de la Cierva 3, 28006 Madrid, Spain
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Segura M, Bricoli B, Casnati A, Muñoz EM, Sansone F, Ungaro R, Vicent C. A prototype calix[4]arene-based receptor for carbohydrate recognition containing peptide and phosphate binding groups. J Org Chem 2003; 68:6296-303. [PMID: 12895063 DOI: 10.1021/jo034471q] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A novel class of macrobicyclic receptors for carbohydrate recognition based on upper rim, peptide-bridged calix[4]arenes has been designed and synthesized. Receptor 12, in which a charged phosphate group cooperates with peptide hydrogen-bonding donor and acceptor groups in the binding process, is the most efficient and selective in the complexation of simple carbohydrate derivatives. The selectivity observed is toward beta-glucoside 13a, which is better bound (DeltaG degrees = 19.6 kJ mol(-)(1)) compared to the corresponding alpha anomer 13b (DeltaG degrees = 17.0 kJ mol(-)(1)) and to the beta-galactoside 13c (DeltaG degrees = 17.7 kJ mol(-)(1)) in CDCl(3). A substantial drop in the stability constant is observed by esterification of the phosphate group in the host 12 or by alkylation of the OH groups in the 2 and 3 positions in the beta-glucoside and beta-galactoside derivatives. On the basis of a careful analysis of the (1)H NMR data available, a binding mode of the beta-octylglucoside 13a to receptor 12 is proposed.
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Affiliation(s)
- Margarita Segura
- Dipartimento di Chimica Organica e Industriale, Università degli Studi, Parco Area delle Scienze 17/A, I-43100 Parma, Italy
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Asensio JL, Hidalgo A, Cuesta I, González C, Cañada J, Vicent C, Chiara JL, Cuevas G, Jiménez-Barbero J. Experimental evidence for the existence of non-exo-anomeric conformations in branched oligosaccharides: NMR analysis of the structure and dynamics of aminoglycosides of the neomycin family. Chemistry 2002; 8:5228-40. [PMID: 12613042 DOI: 10.1002/1521-3765(20021115)8:22<5228::aid-chem5228>3.0.co;2-l] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
It is commonly known that the exo-anomeric effect is a major factor governing the conformational behavior of naturally occurring oligosaccharides. Conformational flexibility in these molecules mainly concerns the aglycon psi angle since phi is restricted by this stereo-electronic effect. In fact, to the best of our knowledge no case of a natural glycoside adopting a non-exo-anomeric conformation in solution has yet been reported. With respect to the flexibility among naturally occurring carbohydrates, branched type oligosaccharides including sugar residues glycosidated at contiguous positions (such as blood type carbohydrate antigens Lewis X) have been considered as the paradigm of rigid saccharides--the rigidity being enhanced by van der Waals interactions. Herein, we demonstrate unambiguously that both common beliefs are not to be generalized. For example in neomycin B, a branched oligosaccharide antibiotic, a large number of non-exo-anomeric conformations was detected in solution for the first time in naturally occurring sugars. This unusual behavior is attributed to branching. Here, polar contacts between non-vicinal sugar units lead to an enhanced flexibility of the ribose glycosidic torsion phi. The influence of sugar flexibility on RNA recognition will also be discussed.
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Affiliation(s)
- Juan Luis Asensio
- Instituto de Química Orgánica, CSIC Juan de la Cierva 3, 28006 Madrid, Spain
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Asensio JL, Hidalgo A, Cuesta I, Gonzalez C, Cañada J, Vicent C, Chiara JL, Cuevas G, Jimenez-Barbero J. Experimental evidence for the existence of non-exo-anomeric conformations in branched oligosaccharides: the neomycin-B case. Chem Commun (Camb) 2002:2232-3. [PMID: 12397992 DOI: 10.1039/b205566j] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
For the first time in natural O-glycosides, a large amount of non-exo-anomeric conformation is experimentally detected, in solution.
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Affiliation(s)
- Juan Luis Asensio
- Instituto de Química Organica (CSIC), Juan de la Cierva 3, Madrid, Spain
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Hawley J, Bampos N, Aboitiz N, Jiménez-Barbero J, Paz M, Sanders J, Carmona P, Vicent C. Investigation of the Hydrogen Bonding Properties of a Series of Monosaccharides in Aqueous Media by 1H NMR and IR Spectroscopy. European J Org Chem 2002. [DOI: 10.1002/1099-0690(200206)2002:12<1925::aid-ejoc1925>3.0.co;2-9] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Jimenez-Barbero J, Junquera E, Martin-Pastor M, Sharma S, Vicent C, Penades S. Molecular Recognition of Carbohydrates Using a Synthetic Receptor. A Model System to Understand the Stereoselectivity of a Carbohydrate-Carbohydrate Interaction in Water. J Am Chem Soc 2002. [DOI: 10.1021/ja00150a016] [Citation(s) in RCA: 69] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Vicent C, Bosso C, Cano FH, De Paz JLG, Foces-Foces C, Jimenez-Barbero J, Martin-Lomas M, Penades S. Chiral crown ethers incorporating .alpha.,.alpha.-trehalose. Unexpected structure of a trehalose containing 18-crown-6. J Org Chem 2002. [DOI: 10.1021/jo00011a030] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Vicent C, Hirst SC, Garcia-Tellado F, Hamilton AD. Conformational selectivity in molecular recognition: the influence of artificial receptors on the cis-trans isomerization of acylprolines. J Am Chem Soc 2002. [DOI: 10.1021/ja00014a055] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Coteron JM, Vicent C, Bosso C, Penades S. Glycophanes, cyclodextrin-cyclophane hybrid receptors for apolar binding in aqueous solutions. A stereoselective carbohydrate-carbohydrate interaction in water. J Am Chem Soc 2002. [DOI: 10.1021/ja00075a023] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Carmona P, Molina M, Aboitiz N, Vicent C. Vibrational coupling as diagnostic for intramolecular hydrogen bonds of carbohydrates in aqueous solution. Biopolymers 2002; 67:20-5. [PMID: 11842410 DOI: 10.1002/bip.10024] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
The coupling of nuC-O and deltaO-D vibrations in the 1200-900 cm(-1) IR range leads to band shifting in opposite directions, which provides information on intramolecular hydrogen bonding of carbohydrates in aqueous solution. The aqueous solution IR spectra of 2-acetamide-1,6-anhydro-2-deoxy-D-glucopyranose and cis-1,2-cyclopentanediol and tetrahydrofuran-ethanol mixtures are reported. Frequency upshifting upon deuteration is observed for the nuC-O bands of both a hydrogen bond acceptor and donor in ether-hydroxyl and hydroxyl-hydroxyl contacts. The 1200-900 cm(-1) range can be used to reveal the presence of intramolecular hydrogen bonds in aqueous carbohydrates, unlike the OH stretching region, which cannot be used in this sense due to carbohydrate band masking by the strong nuOH IR absorption of water.
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Affiliation(s)
- Pedro Carmona
- Instituto de Estructura de la Materia (CSIC), Serrano 121, 28006 Madrid, Spain.
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Muñoz EM, López de la Paz M, Jiménez-Barbero J, Ellis G, Pérez M, Vicent C. The relevance of carbohydrate hydrogen-bonding cooperativity effects: a cooperative 1,2-trans-diaxial diol and amido alcohol hydrogen-bonding array as an efficient carbohydrate-phosphate binding motif in nonpolar media. Chemistry 2002; 8:1908-14. [PMID: 12007101 DOI: 10.1002/1521-3765(20020415)8:8<1908::aid-chem1908>3.0.co;2-j] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Carbohydrates with suitably positioned intramolecularly hydrogen-bonded hydroxyl and amide groups have the potential to act as efficient bidentate phosphate binders by taking advantage of sigma- and/or ,sigma,pi-H-bonding cooperativity in nonpolar solvents. Donor-donor 1,2-trans-diaxial amido alcohol (1) and diol (3), in which one of the donor centres is cooperative, are very efficient carbohydrate-phosphate binding motifs. We have proven and quantified the key role of hydrogen-bonding centres indirectly involved in complexation, which serve to generate an intramolecular H-bond (six-membered cis H-bond) in 1 and 3. This motif enhances the donor nature of the H-bonding centres that are directly involved in complexation. A comparison of the thermodynamic parameters of the complexes formed between phosphate and a cooperative (1-Phos) or anti-cooperative (2-Phos) bidentate H-bonded motif of a carbohydrate has allowed us to quantify the energetic advantage of H-bonding cooperativity in CDCl3 and CDCl3/CCl4 (1:1.3) (Delta Delta G degrees=-2.2 and -2.0 kcal mol(-1), respectively). The solvent dependences of the entropy and enthalpy contributions to binding provide a valuable example of the delicate balance between entropy and enthalpy that can arise for a single process, providing effective cooperative binding in terms of Delta G degrees.
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