1
|
Douchamps V, di Volo M, Torcini A, Battaglia D, Goutagny R. Gamma oscillatory complexity conveys behavioral information in hippocampal networks. Nat Commun 2024; 15:1849. [PMID: 38418832 PMCID: PMC10902292 DOI: 10.1038/s41467-024-46012-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2023] [Accepted: 02/09/2024] [Indexed: 03/02/2024] Open
Abstract
The hippocampus and entorhinal cortex exhibit rich oscillatory patterns critical for cognitive functions. In the hippocampal region CA1, specific gamma-frequency oscillations, timed at different phases of the ongoing theta rhythm, are hypothesized to facilitate the integration of information from varied sources and contribute to distinct cognitive processes. Here, we show that gamma elements -a multidimensional characterization of transient gamma oscillatory episodes- occur at any frequency or phase relative to the ongoing theta rhythm across all CA1 layers in male mice. Despite their low power and stochastic-like nature, individual gamma elements still carry behavior-related information and computational modeling suggests that they reflect neuronal firing. Our findings challenge the idea of rigid gamma sub-bands, showing that behavior shapes ensembles of irregular gamma elements that evolve with learning and depend on hippocampal layers. Widespread gamma diversity, beyond randomness, may thus reflect complexity, likely functional but invisible to classic average-based analyses.
Collapse
Affiliation(s)
- Vincent Douchamps
- Université de Strasbourg, Laboratoire de Neurosciences Cognitives et Adaptatives (LNCA), CNRS, UMR 7364, Strasbourg, France
| | - Matteo di Volo
- Université Claude Bernard Lyon 1, Institut National de la Santé et de la Recherche Médicale, Stem Cell and Brain Research Institute, U1208, Bron, France
- CY Cergy Paris Université, Laboratoire de Physique Théorique et Modélisation (LPTM), CNRS, UMR 8089, 95302, Cergy-Pontoise, France
| | - Alessandro Torcini
- CY Cergy Paris Université, Laboratoire de Physique Théorique et Modélisation (LPTM), CNRS, UMR 8089, 95302, Cergy-Pontoise, France
- CNR - Consiglio Nazionale delle Ricerche, Istituto dei Sistemi Complessi, via Madonna del Piano 10, 50019, Sesto Fiorentino, Italy
| | - Demian Battaglia
- Université de Strasbourg, Laboratoire de Neurosciences Cognitives et Adaptatives (LNCA), CNRS, UMR 7364, Strasbourg, France.
- Aix-Marseille Université, Institut de Neurosciences des Systèmes (INS), INSERM, UMR 1106, Marseille, France.
- University of Strasbourg Institute for Advanced Studies (USIAS), Strasbourg, France.
| | - Romain Goutagny
- Université de Strasbourg, Laboratoire de Neurosciences Cognitives et Adaptatives (LNCA), CNRS, UMR 7364, Strasbourg, France.
| |
Collapse
|
2
|
Voges N, Lima V, Hausmann J, Brovelli A, Battaglia D. Decomposing Neural Circuit Function into Information Processing Primitives. J Neurosci 2024; 44:e0157232023. [PMID: 38050070 PMCID: PMC10866194 DOI: 10.1523/jneurosci.0157-23.2023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2023] [Revised: 09/01/2023] [Accepted: 09/19/2023] [Indexed: 12/06/2023] Open
Abstract
It is challenging to measure how specific aspects of coordinated neural dynamics translate into operations of information processing and, ultimately, cognitive functions. An obstacle is that simple circuit mechanisms-such as self-sustained or propagating activity and nonlinear summation of inputs-do not directly give rise to high-level functions. Nevertheless, they already implement simple the information carried by neural activity. Here, we propose that distinct functions, such as stimulus representation, working memory, or selective attention, stem from different combinations and types of low-level manipulations of information or information processing primitives. To test this hypothesis, we combine approaches from information theory with simulations of multi-scale neural circuits involving interacting brain regions that emulate well-defined cognitive functions. Specifically, we track the information dynamics emergent from patterns of neural dynamics, using quantitative metrics to detect where and when information is actively buffered, transferred or nonlinearly merged, as possible modes of low-level processing (storage, transfer and modification). We find that neuronal subsets maintaining representations in working memory or performing attentional gain modulation are signaled by their boosted involvement in operations of information storage or modification, respectively. Thus, information dynamic metrics, beyond detecting which network units participate in cognitive processing, also promise to specify how and when they do it, that is, through which type of primitive computation, a capability that may be exploited for the analysis of experimental recordings.
Collapse
Affiliation(s)
- Nicole Voges
- Institut de Neurosciences de La Timone, UMR 7289, CNRS, Aix-Marseille Université, Marseille 13005, France
- Institute for Language, Communication and the Brain (ILCB), Aix-Marseille Université, Marseille 13005, France
| | - Vinicius Lima
- Institut de Neurosciences des Systèmes (INS), UMR 1106, Aix-Marseille Université, Marseille 13005, France
| | - Johannes Hausmann
- R&D Department, Hyland Switzerland Sarl, Corcelles NE 2035, Switzerland
| | - Andrea Brovelli
- Institut de Neurosciences de La Timone, UMR 7289, CNRS, Aix-Marseille Université, Marseille 13005, France
- Institute for Language, Communication and the Brain (ILCB), Aix-Marseille Université, Marseille 13005, France
| | - Demian Battaglia
- Institute for Language, Communication and the Brain (ILCB), Aix-Marseille Université, Marseille 13005, France
- Institut de Neurosciences des Systèmes (INS), UMR 1106, Aix-Marseille Université, Marseille 13005, France
- University of Strasbourg Institute for Advanced Studies (USIAS), Strasbourg 67000, France
| |
Collapse
|
3
|
Arbabyazd L, Petkoski S, Breakspear M, Solodkin A, Battaglia D, Jirsa V. State-switching and high-order spatiotemporal organization of dynamic functional connectivity are disrupted by Alzheimer's disease. Netw Neurosci 2023; 7:1420-1451. [PMID: 38144688 PMCID: PMC10727776 DOI: 10.1162/netn_a_00332] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Accepted: 07/27/2023] [Indexed: 12/26/2023] Open
Abstract
Spontaneous activity during the resting state, tracked by BOLD fMRI imaging, or shortly rsfMRI, gives rise to brain-wide dynamic patterns of interregional correlations, whose structured flexibility relates to cognitive performance. Here, we analyze resting-state dynamic functional connectivity (dFC) in a cohort of older adults, including amnesic mild cognitive impairment (aMCI, N = 34) and Alzheimer's disease (AD, N = 13) patients, as well as normal control (NC, N = 16) and cognitively "supernormal" controls (SNC, N = 10) subjects. Using complementary state-based and state-free approaches, we find that resting-state fluctuations of different functional links are not independent but are constrained by high-order correlations between triplets or quadruplets of functionally connected regions. When contrasting patients with healthy subjects, we find that dFC between cingulate and other limbic regions is increasingly bursty and intermittent when ranking the four groups from SNC to NC, aMCI and AD. Furthermore, regions affected at early stages of AD pathology are less involved in higher order interactions in patient than in control groups, while pairwise interactions are not significantly reduced. Our analyses thus suggest that the spatiotemporal complexity of dFC organization is precociously degraded in AD and provides a richer window into the underlying neurobiology than time-averaged FC connections.
Collapse
Affiliation(s)
- Lucas Arbabyazd
- Université Aix-Marseille, INSERM UMR 1106, Institut de Neurosciences des Systèmes, Marseille, France
| | - Spase Petkoski
- Université Aix-Marseille, INSERM UMR 1106, Institut de Neurosciences des Systèmes, Marseille, France
| | | | - Ana Solodkin
- Neurosciences, School of Behavioral and Brain Sciences, University of Texas at Dallas, Richardson, TX, USA
| | - Demian Battaglia
- Université Aix-Marseille, INSERM UMR 1106, Institut de Neurosciences des Systèmes, Marseille, France
- University of Strasbourg Institute for Advanced Studies, Strasbourg, France
| | - Viktor Jirsa
- Université Aix-Marseille, INSERM UMR 1106, Institut de Neurosciences des Systèmes, Marseille, France
| |
Collapse
|
4
|
Schwey A, Battaglia D, Bahuguna J, Malfait N. Different Faces of Medial Beta-Band Activity Reflect Distinct Visuomotor Feedback Signals. J Neurosci 2023; 43:8472-8486. [PMID: 37845035 PMCID: PMC10711699 DOI: 10.1523/jneurosci.2238-22.2023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Revised: 09/07/2023] [Accepted: 09/08/2023] [Indexed: 10/18/2023] Open
Abstract
Beta-band (13-35 Hz) modulations following reward, task outcome feedback, and error have been described in cognitive and/or motor adaptation tasks. Observations from different studies are, however, difficult to conciliate. Among the studies that used cognitive response selection tasks, several reported an increase in beta-band activity following reward, whereas others observed increased beta power after negative feedback. Moreover, in motor adaptation tasks, an attenuation of the postmovement beta rebound follows a movement execution error induced by visual or mechanical perturbations. Given that kinematic error typically leads to negative task-outcome feedback (e.g., target missed), one may wonder how contradictory modulations, beta power decrease with movement error versus beta power increase with negative feedback, may coexist. We designed a motor adaptation task in which female and male participants experience varied feedbacks-binary success/failure feedback, kinematic error, and sensory-prediction error-and demonstrate that beta-band modulations in opposite directions coexist at different spatial locations, time windows, and frequency ranges. First, high beta power in the medial frontal cortex showed opposite modulations well separated in time when compared in success and failure trials; that is, power was higher in success trials just after the binary success feedback, whereas it was lower in the postmovement period compared with failure trials. Second, although medial frontal high-beta activity was sensitive to task outcome, low-beta power in the medial parietal cortex was strongly attenuated following movement execution error but was not affected by either the outcome of the task or sensory-prediction error. These findings suggest that medial beta activity in different spatio-temporal-spectral configurations play a multifaceted role in encoding qualitatively distinct feedback signals.SIGNIFICANCE STATEMENT Beta-band activity reflects neural processes well beyond sensorimotor functions, including cognition and motivation. By disentangling alternative spatio-temporal-spectral patterns of possible beta-oscillatory activity, we reconcile a seemingly discrepant literature. First, high-beta power in the medial frontal cortex showed opposite modulations separated in time in success and failure trials; power was higher in success trials just after success feedback and lower in the postmovement period compared with failure trials. Second, although medial frontal high-beta activity was sensitive to task outcome, low-beta power in the medial parietal cortex was strongly attenuated following movement execution error but was not affected by the task outcome or the sensory-prediction error. We propose that medial beta activity reflects distinct feedback signals depending on its anatomic location, time window, and frequency range.
Collapse
Affiliation(s)
- Antoine Schwey
- Institut de Neurosciences de la Timone, Unité Mixte de Recherche 7289, Centre National de la Recherche Scientifique, Aix-Marseille Université, 13005 Marseille, France
| | - Demian Battaglia
- Institut de Neurosciences des Systèmes, Unité Mixte de Recherche 7289, Institut National de la Santé et de la Recherche Médicale, Aix-Marseille Université, 13005 Marseille, France
- Institut d'Etudes Avancées de l'Université de Strasbourg, Université de Strasbourg, 67084 Strasbourg, France
| | - Jyotika Bahuguna
- Institut d'Etudes Avancées de l'Université de Strasbourg, Université de Strasbourg, 67084 Strasbourg, France
- Department of Psychology, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213
| | - Nicole Malfait
- Institut de Neurosciences de la Timone, Unité Mixte de Recherche 7289, Centre National de la Recherche Scientifique, Aix-Marseille Université, 13005 Marseille, France
| |
Collapse
|
5
|
Clawson W, Waked B, Madec T, Ghestem A, Quilichini PP, Battaglia D, Bernard C. Perturbed Information Processing Complexity in Experimental Epilepsy. J Neurosci 2023; 43:6573-6587. [PMID: 37550052 PMCID: PMC10513075 DOI: 10.1523/jneurosci.0383-23.2023] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2023] [Revised: 07/07/2023] [Accepted: 07/20/2023] [Indexed: 08/09/2023] Open
Abstract
Comorbidities, such as cognitive deficits, which often accompany epilepsies, constitute a basal state, while seizures are rare and transient events. This suggests that neural dynamics, in particular those supporting cognitive function, are altered in a permanent manner in epilepsy. Here, we test the hypothesis that primitive processes of information processing at the core of cognitive function (i.e., storage and sharing of information) are altered in the hippocampus and the entorhinal cortex in experimental epilepsy in adult, male Wistar rats. We find that information storage and sharing are organized into substates across the stereotypic states of slow and theta oscillations in both epilepsy and control conditions. However, their internal composition and organization through time are disrupted in epilepsy, partially losing brain state selectivity compared with controls, and shifting toward a regimen of disorder. We propose that the alteration of information processing at this algorithmic level of computation, the theoretical intermediate level between structure and function, may be a mechanism behind the emergent and widespread comorbidities associated with epilepsy, and perhaps other disorders.SIGNIFICANCE STATEMENT Comorbidities, such as cognitive deficits, which often accompany epilepsies, constitute a basal state, while seizures are rare and transient events. This suggests that neural dynamics, in particular those supporting cognitive function, are altered in a permanent manner in epilepsy. Here, we show that basic processes of information processing at the core of cognitive function (i.e., storage and sharing of information) are altered in the hippocampus and the entorhinal cortex (two regions involved in memory processes) in experimental epilepsy. Such disruption of information processing at the algorithmic level itself could underlie the general performance impairments in epilepsy.
Collapse
Affiliation(s)
- Wesley Clawson
- Aix Marseille Université, INSERM, INS, Institut de Neurosciences des Systèmes, Marseille, France
- Allen Discovery Center, Tufts University, Medford, Massachusetts
| | - Benjamin Waked
- Aix Marseille Université, INSERM, INS, Institut de Neurosciences des Systèmes, Marseille, France
| | - Tanguy Madec
- Aix Marseille Université, INSERM, INS, Institut de Neurosciences des Systèmes, Marseille, France
| | - Antoine Ghestem
- Aix Marseille Université, INSERM, INS, Institut de Neurosciences des Systèmes, Marseille, France
| | - Pascale P Quilichini
- Aix Marseille Université, INSERM, INS, Institut de Neurosciences des Systèmes, Marseille, France
| | - Demian Battaglia
- Aix Marseille Université, INSERM, INS, Institut de Neurosciences des Systèmes, Marseille, France
- University of Strasbourg Institute for Advanced Studies, Strasbourg, France
| | - Christophe Bernard
- Aix Marseille Université, INSERM, INS, Institut de Neurosciences des Systèmes, Marseille, France
| |
Collapse
|
6
|
Naik S, Adibpour P, Dubois J, Dehaene-Lambertz G, Battaglia D. Event-related variability is modulated by task and development. Neuroimage 2023; 276:120208. [PMID: 37268095 DOI: 10.1016/j.neuroimage.2023.120208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Revised: 05/11/2023] [Accepted: 05/30/2023] [Indexed: 06/04/2023] Open
Abstract
In carefully designed experimental paradigms, cognitive scientists interpret the mean event-related potentials (ERP) in terms of cognitive operations. However, the huge signal variability from one trial to the next, questions the representability of such mean events. We explored here whether this variability is an unwanted noise, or an informative part of the neural response. We took advantage of the rapid changes in the visual system during human infancy and analyzed the variability of visual responses to central and lateralized faces in 2-to 6-month-old infants compared to adults using high-density electroencephalography (EEG). We observed that neural trajectories of individual trials always remain very far from ERP components, only moderately bending their direction with a substantial temporal jitter across trials. However, single trial trajectories displayed characteristic patterns of acceleration and deceleration when approaching ERP components, as if they were under the active influence of steering forces causing transient attraction and stabilization. These dynamic events could only partly be accounted for by induced microstate transitions or phase reset phenomena. Importantly, these structured modulations of response variability, both between and within trials, had a rich sequential organization, which in infants, was modulated by the task difficulty and age. Our approaches to characterize Event Related Variability (ERV) expand on classic ERP analyses and provide the first evidence for the functional role of ongoing neural variability in human infants.
Collapse
Affiliation(s)
- Shruti Naik
- Cognitive Neuroimaging Unit U992, NeuroSpin Center, F-91190 Gif/Yvette, France
| | - Parvaneh Adibpour
- Cognitive Neuroimaging Unit U992, NeuroSpin Center, F-91190 Gif/Yvette, France
| | - Jessica Dubois
- Cognitive Neuroimaging Unit U992, NeuroSpin Center, F-91190 Gif/Yvette, France; Université de Paris, NeuroDiderot, Inserm, F-75019 Paris, France
| | | | - Demian Battaglia
- Institute for System Neuroscience U1106, Aix-Marseille Université, F-13005 Marseille, France; University of Strasbourg Institute for Advanced Studies (USIAS), F-67000 Strasbourg, France.
| |
Collapse
|
7
|
Naik S, Dehaene-Lambertz G, Battaglia D. Repairing Artifacts in Neural Activity Recordings Using Low-Rank Matrix Estimation. Sensors 2023; 23:4847. [PMID: 37430760 DOI: 10.3390/s23104847] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Revised: 05/09/2023] [Accepted: 05/10/2023] [Indexed: 07/12/2023]
Abstract
Electrophysiology recordings are frequently affected by artifacts (e.g., subject motion or eye movements), which reduces the number of available trials and affects the statistical power. When artifacts are unavoidable and data are scarce, signal reconstruction algorithms that allow for the retention of sufficient trials become crucial. Here, we present one such algorithm that makes use of large spatiotemporal correlations in neural signals and solves the low-rank matrix completion problem, to fix artifactual entries. The method uses a gradient descent algorithm in lower dimensions to learn the missing entries and provide faithful reconstruction of signals. We carried out numerical simulations to benchmark the method and estimate optimal hyperparameters for actual EEG data. The fidelity of reconstruction was assessed by detecting event-related potentials (ERP) from a highly artifacted EEG time series from human infants. The proposed method significantly improved the standardized error of the mean in ERP group analysis and a between-trial variability analysis compared to a state-of-the-art interpolation technique. This improvement increased the statistical power and revealed significant effects that would have been deemed insignificant without reconstruction. The method can be applied to any time-continuous neural signal where artifacts are sparse and spread out across epochs and channels, increasing data retention and statistical power.
Collapse
Affiliation(s)
- Shruti Naik
- Cognitive Neuroimaging Unit, Centre National de la Recherche Scientifique (CNRS), Institut National de la Santé et de la Recherche Médicale (INSERM), CEA, Université Paris-Saclay, NeuroSpin Center, F-91190 Gif-sur-Yvette, France
| | - Ghislaine Dehaene-Lambertz
- Cognitive Neuroimaging Unit, Centre National de la Recherche Scientifique (CNRS), Institut National de la Santé et de la Recherche Médicale (INSERM), CEA, Université Paris-Saclay, NeuroSpin Center, F-91190 Gif-sur-Yvette, France
| | - Demian Battaglia
- Institut de Neurosciences des Systèmes, U1106, Centre National de la Recherche Scientifique (CNRS) Aix-Marseille Université, F-13005 Marseille, France
- Institute for Advanced Studies, University of Strasbourg, (USIAS), F-67000 Strasbourg, France
| |
Collapse
|
8
|
Metcalf ES, Battaglia D, Chavez S, Ferris R, O'Leary T. Developmental Competence of equine MI oocytes following in vitro maturation culture. J Equine Vet Sci 2022. [DOI: 10.1016/j.jevs.2022.103962] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
|
9
|
Mallia G, Jiritano F, Battaglia D, Mastroroberto P, Serraino G. P54 MORTALITY AFTER CORONARY ARTERY BYPASS GRAFT IN PATIENTS WITH PRIOR PERCUTANEOUS CORONARY INTERVENTION. Eur Heart J Suppl 2022. [DOI: 10.1093/eurheartj/suac012.052] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Abstract
Background
The clinical impact of prior percutaneous coronary intervention (PCI) in patients requiring surgical revascularization (CABG) is not well investigated. We explore whether prior PCI is associated with adverse outcome after CABG.
Methods and Results
Operations conducted between October 2014 and July 2021 at Magna Graecia University were analyzed using propensity weighted methodology to adjust for confounding. Of a total of 1410 adult patients included in the study, (24%) patients had a history of PCI. At multivariable level, prior PCI was not associated with an increased hospital mortality in both unweighted and weighted patient groups (odds ratio, 0.77; 95%; P = 0.41 and odds ratio, 0.93; 95% confidence interval; P = 0.84, respectively). Subgroup analyses confirmed that prior PCI had no impact on hospital mortality and morbidity, including reexploration for bleeding, blood transfusion, hospital resource use, and neurological, renal, and cardiac complications.
Conclusions
Our study showed that prior PCI was not associated with an increased risk of mortality or other adverse outcomes in patients undergoing CABG. Further studies are needed to ascertain the prognostic impact of prior PCI in the outcome after CABG.
Collapse
Affiliation(s)
- G Mallia
- UNIVERSITÀ MAGNA GRAECIA, CATANZARO
| | | | | | | | | |
Collapse
|
10
|
Aguilera M, Douchamps V, Battaglia D, Goutagny R. How Many Gammas? Redefining Hippocampal Theta-Gamma Dynamic During Spatial Learning. Front Behav Neurosci 2022; 16:811278. [PMID: 35177972 PMCID: PMC8843838 DOI: 10.3389/fnbeh.2022.811278] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Accepted: 01/03/2022] [Indexed: 01/09/2023] Open
Abstract
The hippocampal formation is one of the brain systems in which the functional roles of coordinated oscillations in information representation and communication are better studied. Within this circuit, neuronal oscillations are conceived as a mechanism to precisely coordinate upstream and downstream neuronal ensembles, underlying dynamic exchange of information. Within a global reference framework provided by theta (θ) oscillations, different gamma-frequency (γ) carriers would temporally segregate information originating from different sources, thereby allowing networks to disambiguate convergent inputs. Two γ sub-bands were thus defined according to their frequency (slow γ, 30–80 Hz; medium γ, 60–120 Hz) and differential power distribution across CA1 dendritic layers. According to this prevalent model, layer-specific γ oscillations in CA1 would reliably identify the temporal dynamics of afferent inputs and may therefore aid in identifying specific memory processes (encoding for medium γ vs. retrieval for slow γ). However, this influential view, derived from time-averages of either specific γ sub-bands or different projection methods, might not capture the complexity of CA1 θ-γ interactions. Recent studies investigating γ oscillations at the θ cycle timescale have revealed a more dynamic and diverse landscape of θ-γ motifs, with many θ cycles containing multiple γ bouts of various frequencies. To properly capture the hippocampal oscillatory complexity, we have argued in this review that we should consider the entirety of the data and its multidimensional complexity. This will call for a revision of the actual model and will require the use of new tools allowing the description of individual γ bouts in their full complexity.
Collapse
Affiliation(s)
- Matthieu Aguilera
- Laboratoire de Neurosciences Cognitives et Adaptatives (LNCA), Faculté de Psychologie, Université de Strasbourg, Strasbourg, France
| | - Vincent Douchamps
- Laboratoire de Neurosciences Cognitives et Adaptatives (LNCA), Faculté de Psychologie, Université de Strasbourg, Strasbourg, France
| | - Demian Battaglia
- Institut de Neurosciences des Systèmes, CNRS, Aix-Marseille Université, Marseille, France
- University of Strasbourg Institute for Advanced Study (USIAS), Strasbourg, France
| | - Romain Goutagny
- Laboratoire de Neurosciences Cognitives et Adaptatives (LNCA), Faculté de Psychologie, Université de Strasbourg, Strasbourg, France
- *Correspondence: Romain Goutagny,
| |
Collapse
|
11
|
Spaeth L, Bahuguna J, Gagneux T, Dorgans K, Sugihara I, Poulain B, Battaglia D, Isope P. Cerebellar connectivity maps embody individual adaptive behavior in mice. Nat Commun 2022; 13:580. [PMID: 35102165 PMCID: PMC8803868 DOI: 10.1038/s41467-022-27984-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2021] [Accepted: 12/13/2021] [Indexed: 11/16/2022] Open
Abstract
The cerebellar cortex encodes sensorimotor adaptation during skilled locomotor behaviors, however the precise relationship between synaptic connectivity and behavior is unclear. We studied synaptic connectivity between granule cells (GCs) and Purkinje cells (PCs) in murine acute cerebellar slices using photostimulation of caged glutamate combined with patch-clamp in developing or after mice adapted to different locomotor contexts. By translating individual maps into graph network entities, we found that synaptic maps in juvenile animals undergo critical period characterized by dissolution of their structure followed by the re-establishment of a patchy functional organization in adults. Although, in adapted mice, subdivisions in anatomical microzones do not fully account for the observed spatial map organization in relation to behavior, we can discriminate locomotor contexts with high accuracy. We also demonstrate that the variability observed in connectivity maps directly accounts for motor behavior traits at the individual level. Our findings suggest that, beyond general motor contexts, GC-PC networks also encode internal models underlying individual-specific motor adaptation. The variability in synaptic connectivity observed at the cerebellar granule cell - Purkinje cell connection in mice accounts for motor behavior traits at the individual level, suggesting that cerebellar networks encode internal models underlying individual-specific motor adaptation.
Collapse
|
12
|
Borcuk C, Héraud C, Herbeaux K, Diringer M, Panzer É, Scuto J, Hashimoto S, Saido TC, Saito T, Goutagny R, Battaglia D, Mathis C. Early memory deficits and extensive brain network disorganization in the AppNL-F/MAPT double knock-in mouse model of familial Alzheimer's disease. Aging Brain 2022; 2:100042. [PMID: 36908877 PMCID: PMC9997176 DOI: 10.1016/j.nbas.2022.100042] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Accepted: 05/18/2022] [Indexed: 10/18/2022] Open
Abstract
A critical challenge in current research on Alzheimer's disease (AD) is to clarify the relationship between network dysfunction and the emergence of subtle memory deficits in itspreclinical stage. The AppNL-F/MAPT double knock-in (dKI) model with humanized β-amyloid peptide (Aβ) and tau was used to investigate both memory and network dysfunctions at an early stage. Young male dKI mice (2 to 6 months) were tested in three tasks taxing different aspects of recognition memory affected in preclinical AD. An early deficit first appeared in the object-place association task at the age of 4 months, when increased levels of β-CTF and Aβ were detected in both the hippocampus and the medial temporal cortex, and tau pathology was found only in the medial temporal cortex. Object-place task-dependent c-Fos activation was then analyzed in 22 subregions across the medial prefrontal cortex, claustrum, retrosplenial cortex, and medial temporal lobe. Increased c-Fos activation was detected in the entorhinal cortex and the claustrum of dKI mice. During recall, network efficiency was reduced across cingulate regions with a major disruption of information flow through the retrosplenial cortex. Our findings suggest that early perirhinal-entorhinal pathology is associated with abnormal activity which may spread to downstream regions such as the claustrum, the medial prefrontal cortex and ultimately the key retrosplenial hub which relays information from frontal to temporal lobes. The similarity between our findings and those reported in preclinical stages of AD suggests that the AppNL-F/MAPT dKI model has a high potential for providing key insights into preclinical AD.
Collapse
Key Words
- AD, Alzheimer’s disease
- ADAD, autosomal dominant Alzheimer’s disease
- Associative memory
- CLA, claustrum
- Claustrum
- DMN, default mode network
- EI, exploration index
- FC, functional connectivity
- Functional connectivity
- MI, Memory index
- MTC, medial temporal cortex
- MTL, medial temporal lobe
- Medial temporal cortex
- NOR, novel object recognition
- OL, Object location
- OP, object-place
- PS, Pattern Separation
- Preclinical Alzheimer disease
- Retrosplenial cortex
- aMCI, amnestic mild cognitive impairment
- amyloid beta, Aβ
- dKI, AppNL-F/MAPT double knock-in
- ptau Thr 181, Thr181phosphorylated tau protein
Collapse
Affiliation(s)
- Christopher Borcuk
- Université de Strasbourg, CNRS, Laboratoire de Neurosciences Cognitives et Adaptatives (LNCA) UMR 7364, F-67000 Strasbourg, France
| | - Céline Héraud
- Université de Strasbourg, CNRS, Laboratoire de Neurosciences Cognitives et Adaptatives (LNCA) UMR 7364, F-67000 Strasbourg, France
| | - Karine Herbeaux
- Université de Strasbourg, CNRS, Laboratoire de Neurosciences Cognitives et Adaptatives (LNCA) UMR 7364, F-67000 Strasbourg, France
| | - Margot Diringer
- Université de Strasbourg, CNRS, Laboratoire de Neurosciences Cognitives et Adaptatives (LNCA) UMR 7364, F-67000 Strasbourg, France
| | - Élodie Panzer
- Université de Strasbourg, CNRS, Laboratoire de Neurosciences Cognitives et Adaptatives (LNCA) UMR 7364, F-67000 Strasbourg, France
| | - Jil Scuto
- Université de Strasbourg, CNRS, Laboratoire de Neurosciences Cognitives et Adaptatives (LNCA) UMR 7364, F-67000 Strasbourg, France
| | - Shoko Hashimoto
- Laboratory for Proteolytic Neuroscience, RIKEN Center for Brain Science, 2-1 Hirosawa, Wako-city, Saitama 351-0198, Japan
| | - Takaomi C Saido
- Laboratory for Proteolytic Neuroscience, RIKEN Center for Brain Science, 2-1 Hirosawa, Wako-city, Saitama 351-0198, Japan
| | - Takashi Saito
- Laboratory for Proteolytic Neuroscience, RIKEN Center for Brain Science, 2-1 Hirosawa, Wako-city, Saitama 351-0198, Japan
| | - Romain Goutagny
- Université de Strasbourg, CNRS, Laboratoire de Neurosciences Cognitives et Adaptatives (LNCA) UMR 7364, F-67000 Strasbourg, France
| | - Demian Battaglia
- Université de Strasbourg, CNRS, Laboratoire de Neurosciences Cognitives et Adaptatives (LNCA) UMR 7364, F-67000 Strasbourg, France.,University of Strasbourg Institute for Advanced Studies (USIAS), F-67000 Strasbourg, France.,Université d'Aix-Marseille, Inserm, Institut de Neurosciences des Systèmes (INS) UMR_S 1106, F-13005 Marseille, France
| | - Chantal Mathis
- Université de Strasbourg, CNRS, Laboratoire de Neurosciences Cognitives et Adaptatives (LNCA) UMR 7364, F-67000 Strasbourg, France
| |
Collapse
|
13
|
Voutsa V, Battaglia D, Bracken LJ, Brovelli A, Costescu J, Díaz Muñoz M, Fath BD, Funk A, Guirro M, Hein T, Kerschner C, Kimmich C, Lima V, Messé A, Parsons AJ, Perez J, Pöppl R, Prell C, Recinos S, Shi Y, Tiwari S, Turnbull L, Wainwright J, Waxenecker H, Hütt MT. Two classes of functional connectivity in dynamical processes in networks. J R Soc Interface 2021; 18:20210486. [PMID: 34665977 PMCID: PMC8526174 DOI: 10.1098/rsif.2021.0486] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2021] [Accepted: 09/13/2021] [Indexed: 12/12/2022] Open
Abstract
The relationship between network structure and dynamics is one of the most extensively investigated problems in the theory of complex systems of recent years. Understanding this relationship is of relevance to a range of disciplines-from neuroscience to geomorphology. A major strategy of investigating this relationship is the quantitative comparison of a representation of network architecture (structural connectivity, SC) with a (network) representation of the dynamics (functional connectivity, FC). Here, we show that one can distinguish two classes of functional connectivity-one based on simultaneous activity (co-activity) of nodes, the other based on sequential activity of nodes. We delineate these two classes in different categories of dynamical processes-excitations, regular and chaotic oscillators-and provide examples for SC/FC correlations of both classes in each of these models. We expand the theoretical view of the SC/FC relationships, with conceptual instances of the SC and the two classes of FC for various application scenarios in geomorphology, ecology, systems biology, neuroscience and socio-ecological systems. Seeing the organisation of dynamical processes in a network either as governed by co-activity or by sequential activity allows us to bring some order in the myriad of observations relating structure and function of complex networks.
Collapse
Affiliation(s)
- Venetia Voutsa
- Department of Life Sciences and Chemistry, Jacobs University Bremen, 28759 Bremen, Germany
| | - Demian Battaglia
- Aix-Marseille Université, Inserm, Institut de Neurosciences des Systèmes (UMR 1106), Marseille, France
- University of Strasbourg Institute for Advanced Studies (USIAS), Strasbourg 67083, France
| | | | - Andrea Brovelli
- Aix-Marseille Université, CNRS, Institut de Neurosciences de la Timone (UMR 7289), Marseille, France
| | - Julia Costescu
- Department of Geography, Durham University, Durham DH1 3LE, UK
| | - Mario Díaz Muñoz
- Department of Sustainability, Governance and Methods, Modul University Vienna, 1190 Vienna, Austria
| | - Brian D. Fath
- Department of Biological Sciences, Towson University, Towson, Maryland 21252, USA
- Advancing Systems Analysis Program, International Institute for Applied Systems Analysis, Laxenburg 2361, Austria
- Department of Environmental Studies, Masaryk University, 60200 Brno, Czech Republic
| | - Andrea Funk
- Institute of Hydrobiology and Aquatic Ecosystem Management (IHG), University of Natural Resources and Life Sciences Vienna (BOKU), 1180 Vienna, Austria
- WasserCluster Lunz - Biologische Station GmbH, Dr. Carl Kupelwieser Promenade 5, 3293 Lunz am See, Austria
| | - Mel Guirro
- Department of Geography, Durham University, Durham DH1 3LE, UK
| | - Thomas Hein
- Institute of Hydrobiology and Aquatic Ecosystem Management (IHG), University of Natural Resources and Life Sciences Vienna (BOKU), 1180 Vienna, Austria
- WasserCluster Lunz - Biologische Station GmbH, Dr. Carl Kupelwieser Promenade 5, 3293 Lunz am See, Austria
| | - Christian Kerschner
- Department of Sustainability, Governance and Methods, Modul University Vienna, 1190 Vienna, Austria
- Department of Environmental Studies, Masaryk University, 60200 Brno, Czech Republic
| | - Christian Kimmich
- Department of Environmental Studies, Masaryk University, 60200 Brno, Czech Republic
- Regional Science and Environmental Research, Institute for Advanced Studies, 1080 Vienna, Austria
| | - Vinicius Lima
- Aix-Marseille Université, Inserm, Institut de Neurosciences des Systèmes (UMR 1106), Marseille, France
- Aix-Marseille Université, CNRS, Institut de Neurosciences de la Timone (UMR 7289), Marseille, France
| | - Arnaud Messé
- Department of Computational Neuroscience, University Medical Center Eppendorf, Hamburg University, Germany
| | | | - John Perez
- Department of Geography, Durham University, Durham DH1 3LE, UK
| | - Ronald Pöppl
- Department of Geography and Regional Research, University of Vienna, Universitätsstr. 7, 1010 Vienna, Austria
| | - Christina Prell
- Department of Cultural Geography, University of Groningen, 9747 AD, Groningen, The Netherlands
| | - Sonia Recinos
- Institute of Hydrobiology and Aquatic Ecosystem Management (IHG), University of Natural Resources and Life Sciences Vienna (BOKU), 1180 Vienna, Austria
| | - Yanhua Shi
- Department of Environmental Studies, Masaryk University, 60200 Brno, Czech Republic
| | - Shubham Tiwari
- Department of Geography, Durham University, Durham DH1 3LE, UK
| | - Laura Turnbull
- Department of Geography, Durham University, Durham DH1 3LE, UK
| | - John Wainwright
- Department of Geography, Durham University, Durham DH1 3LE, UK
| | - Harald Waxenecker
- Department of Environmental Studies, Masaryk University, 60200 Brno, Czech Republic
| | - Marc-Thorsten Hütt
- Department of Life Sciences and Chemistry, Jacobs University Bremen, 28759 Bremen, Germany
| |
Collapse
|
14
|
Pedreschi N, Bernard C, Clawson W, Quilichini P, Barrat A, Battaglia D. Dynamic core-periphery structure of information sharing networks in entorhinal cortex and hippocampus. Netw Neurosci 2021; 4:946-975. [PMID: 33615098 PMCID: PMC7888487 DOI: 10.1162/netn_a_00142] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2019] [Accepted: 04/16/2020] [Indexed: 02/01/2023] Open
Abstract
Neural computation is associated with the emergence, reconfiguration, and dissolution of cell assemblies in the context of varying oscillatory states. Here, we describe the complex spatiotemporal dynamics of cell assemblies through temporal network formalism. We use a sliding window approach to extract sequences of networks of information sharing among single units in hippocampus and entorhinal cortex during anesthesia and study how global and node-wise functional connectivity properties evolve through time and as a function of changing global brain state (theta vs. slow-wave oscillations). First, we find that information sharing networks display, at any time, a core-periphery structure in which an integrated core of more tightly functionally interconnected units links to more loosely connected network leaves. However the units participating to the core or to the periphery substantially change across time windows, with units entering and leaving the core in a smooth way. Second, we find that discrete network states can be defined on top of this continuously ongoing liquid core-periphery reorganization. Switching between network states results in a more abrupt modification of the units belonging to the core and is only loosely linked to transitions between global oscillatory states. Third, we characterize different styles of temporal connectivity that cells can exhibit within each state of the sharing network. While inhibitory cells tend to be central, we show that, otherwise, anatomical localization only poorly influences the patterns of temporal connectivity of the different cells. Furthermore, cells can change temporal connectivity style when the network changes state. Altogether, these findings reveal that the sharing of information mediated by the intrinsic dynamics of hippocampal and entorhinal cortex cell assemblies have a rich spatiotemporal structure, which could not have been identified by more conventional time- or state-averaged analyses of functional connectivity. It is generally thought that computations performed by local brain circuits rely on complex neural processes, associated with the flexible waxing and waning of cell assemblies, that is, an ensemble of cells firing in tight synchrony. Although cell assembly formation is inherently and unavoidably dynamical, it is still common to find studies in which essentially “static” approaches are used to characterize this process. In the present study, we adopt instead a temporal network approach. Avoiding usual time-averaging procedures, we reveal that hub neurons are not hardwired but that cells vary smoothly their degree of integration within the assembly core. Furthermore, our temporal network framework enables the definition of alternative possible styles of “hubness.” Some cells may share information with a multitude of other units but only in an intermittent manner, as “activists” in a flash mob. In contrast, some other cells may share information in a steadier manner, as resolute “lobbyists.” Finally, by avoiding averages over preimposed states, we show that within each global oscillatory state rich switching dynamics can take place between a repertoire of many available network states. We thus show that the temporal network framework provides a natural and effective language to rigorously describe the rich spatiotemporal patterns of information sharing instantiated by cell assembly evolution.
Collapse
Affiliation(s)
- Nicola Pedreschi
- Aix-Marseille University, Université de Toulon, CNRS, CPT, Turing Center for Living Systems, Marseille, France
| | - Christophe Bernard
- Aix-Marseille University, Inserm, INS, Institut de Neurosciences des Systèmes, Marseille, France
| | - Wesley Clawson
- Aix-Marseille University, Inserm, INS, Institut de Neurosciences des Systèmes, Marseille, France
| | - Pascale Quilichini
- Aix-Marseille University, Inserm, INS, Institut de Neurosciences des Systèmes, Marseille, France
| | - Alain Barrat
- Aix-Marseille University, Université de Toulon, CNRS, CPT, Turing Center for Living Systems, Marseille, France
| | - Demian Battaglia
- Aix-Marseille University, Inserm, INS, Institut de Neurosciences des Systèmes, Marseille, France
| |
Collapse
|
15
|
Arbabyazd LM, Lombardo D, Blin O, Didic M, Battaglia D, Jirsa V. Dynamic Functional Connectivity as a complex random walk: Definitions and the dFCwalk toolbox. MethodsX 2020; 7:101168. [PMID: 33344179 PMCID: PMC7736993 DOI: 10.1016/j.mex.2020.101168] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Accepted: 11/27/2020] [Indexed: 12/30/2022] Open
Abstract
•We have developed a framework to describe the dynamics of Functional Connectivity (dFC) estimated from brain activity time-series as a complex random walk in the space of possible functional networks. This conceptual and methodological framework considers dFC as a smooth reconfiguration process, combining "liquid" and "coordinated" aspects. Unlike other previous approaches, our method does not require the explicit extraction of discrete connectivity states.•In our previous work, we introduced several metrics for the quantitative characterization of the dFC random walk. First, dFC speed analyses extract the distribution of the time-resolved rate of reconfiguration of FC along time. These distributions have a clear peak (typical dFC speed, that can already serve as a biomarker) and fat tails (denoting deviations from Gaussianity that can be detected by suitable scaling analyses of FC network streams). Second, meta-connectivity (MC) analyses identify groups of functional links whose fluctuations co-vary in time and that define veritable dFC modules organized along specific dFC meta-hub controllers (differing from conventional FC modules and hubs). The decomposition of whole-brain dFC by MC allows performing dFC speed analyses separately for each of the detected dFC modules.•We present here blocks and pipelines for dFC random walk analyses that are made easily available through a dedicated MATLABⓇ toolbox (dFCwalk), openly downloadable. Although we applied such analyses mostly to fMRI resting state data, in principle our methods can be extended to any type of neural activity (from Local Field Potentials to EEG, MEG, fNIRS, etc.) or even non-neural time-series.
Collapse
Affiliation(s)
- Lucas M. Arbabyazd
- Université Aix-Marseille, INSERM UMR 1106, Institut de Neurosciences des Systèmes, F-13005 Marseille, France
| | - Diego Lombardo
- Université Aix-Marseille, INSERM UMR 1106, Institut de Neurosciences des Systèmes, F-13005 Marseille, France
| | - Olivier Blin
- Université Aix-Marseille, INSERM UMR 1106, Institut de Neurosciences des Systèmes, F-13005 Marseille, France
- AP-HM, Timone, Service de Pharmacologie Clinique et Pharmacovigilance, F-13005 Marseille, France
| | - Mira Didic
- Université Aix-Marseille, INSERM UMR 1106, Institut de Neurosciences des Systèmes, F-13005 Marseille, France
- AP-HM, Timone, Service de Neurologie et Neuropsychologie, F-13005 Marseille, France
| | - Demian Battaglia
- Université Aix-Marseille, INSERM UMR 1106, Institut de Neurosciences des Systèmes, F-13005 Marseille, France
| | - Viktor Jirsa
- Université Aix-Marseille, INSERM UMR 1106, Institut de Neurosciences des Systèmes, F-13005 Marseille, France
| |
Collapse
|
16
|
Papadopoulos L, Lynn CW, Battaglia D, Bassett DS. Relations between large-scale brain connectivity and effects of regional stimulation depend on collective dynamical state. PLoS Comput Biol 2020; 16:e1008144. [PMID: 32886673 PMCID: PMC7537889 DOI: 10.1371/journal.pcbi.1008144] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2020] [Revised: 10/06/2020] [Accepted: 07/12/2020] [Indexed: 01/09/2023] Open
Abstract
At the macroscale, the brain operates as a network of interconnected neuronal populations, which display coordinated rhythmic dynamics that support interareal communication. Understanding how stimulation of different brain areas impacts such activity is important for gaining basic insights into brain function and for further developing therapeutic neurmodulation. However, the complexity of brain structure and dynamics hinders predictions regarding the downstream effects of focal stimulation. More specifically, little is known about how the collective oscillatory regime of brain network activity—in concert with network structure—affects the outcomes of perturbations. Here, we combine human connectome data and biophysical modeling to begin filling these gaps. By tuning parameters that control collective system dynamics, we identify distinct states of simulated brain activity and investigate how the distributed effects of stimulation manifest at different dynamical working points. When baseline oscillations are weak, the stimulated area exhibits enhanced power and frequency, and due to network interactions, activity in this excited frequency band propagates to nearby regions. Notably, beyond these linear effects, we further find that focal stimulation causes more distributed modifications to interareal coherence in a band containing regions’ baseline oscillation frequencies. Importantly, depending on the dynamical state of the system, these broadband effects can be better predicted by functional rather than structural connectivity, emphasizing a complex interplay between anatomical organization, dynamics, and response to perturbation. In contrast, when the network operates in a regime of strong regional oscillations, stimulation causes only slight shifts in power and frequency, and structural connectivity becomes most predictive of stimulation-induced changes in network activity patterns. In sum, this work builds upon and extends previous computational studies investigating the impacts of stimulation, and underscores the fact that both the stimulation site, and, crucially, the regime of brain network dynamics, can influence the network-wide responses to local perturbations. Stimulation can be used to alter brain activity and is a therapeutic option for certain neurological conditions. However, predicting the distributed effects of local perturbations is difficult. Previous studies show that responses to stimulation depend on anatomical (or structural) coupling. In addition to structure, here we consider how stimulation effects also depend on the brain’s collective dynamical (or functional) state, arising from the coordination of rhythmic activity across large-scale networks. In a whole-brain computational model, we show that global responses to regional stimulation can indeed be contingent upon and differ across various dynamical working points. Notably, depending on the network’s oscillatory regime, stimulation can accelerate the activity of the stimulated site, and lead to widespread effects at both the new, excited frequency, as well as in a much broader frequency range including areas’ baseline frequencies. While structural connectivity is a good predictor of “excited band” changes, in some states “baseline band” effects can be better predicted by functional connectivity, which depends upon the system’s oscillatory regime. By integrating and extending past efforts, our results thus indicate that dynamical—in additional to structural—brain organization plays a role in governing how focal stimulation modulates interactions between distributed network elements.
Collapse
Affiliation(s)
- Lia Papadopoulos
- Department of Physics & Astronomy, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
| | - Christopher W. Lynn
- Department of Physics & Astronomy, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
| | - Demian Battaglia
- Université Aix-Marseille, INSERM UMR 1106, Institut de Neurosciences des Systèmes, F-13005, Marseille, France
| | - Danielle S. Bassett
- Department of Physics & Astronomy, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
- Department of Bioengineering, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
- Department of Electrical & Systems Engineering, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
- Department of Neurology, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
- Department of Psychiatry, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
- Santa Fe Institute, Santa Fe, New Mexico, United States of America
- * E-mail:
| |
Collapse
|
17
|
Lombardo D, Cassé-Perrot C, Ranjeva JP, Le Troter A, Guye M, Wirsich J, Payoux P, Bartrés-Faz D, Bordet R, Richardson JC, Felician O, Jirsa V, Blin O, Didic M, Battaglia D. Modular slowing of resting-state dynamic functional connectivity as a marker of cognitive dysfunction induced by sleep deprivation. Neuroimage 2020; 222:117155. [PMID: 32736002 DOI: 10.1016/j.neuroimage.2020.117155] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2020] [Revised: 05/25/2020] [Accepted: 07/07/2020] [Indexed: 11/29/2022] Open
Abstract
Dynamic Functional Connectivity (dFC) in the resting state (rs) is considered as a correlate of cognitive processing. Describing dFC as a flow across morphing connectivity configurations, our notion of dFC speed quantifies the rate at which FC networks evolve in time. Here we probe the hypothesis that variations of rs dFC speed and cognitive performance are selectively interrelated within specific functional subnetworks. In particular, we focus on Sleep Deprivation (SD) as a reversible model of cognitive dysfunction. We found that whole-brain level (global) dFC speed significantly slows down after 24h of SD. However, the reduction in global dFC speed does not correlate with variations of cognitive performance in individual tasks, which are subtle and highly heterogeneous. On the contrary, we found strong correlations between performance variations in individual tasks -including Rapid Visual Processing (RVP, assessing sustained visual attention)- and dFC speed quantified at the level of functional sub-networks of interest. Providing a compromise between classic static FC (no time) and global dFC (no space), modular dFC speed analyses allow quantifying a different speed of dFC reconfiguration independently for sub-networks overseeing different tasks. Importantly, we found that RVP performance robustly correlates with the modular dFC speed of a characteristic frontoparietal module.
Collapse
Affiliation(s)
- Diego Lombardo
- Aix-Marseille Université, Inserm, Institut de Neurosciences des Systèmes (INS) UMR_S 1106, 13005, Marseille, France
| | - Catherine Cassé-Perrot
- Aix-Marseille Université, Inserm, Institut de Neurosciences des Systèmes (INS) UMR_S 1106, 13005, Marseille, France; Service de Pharmacologie Clinique et Pharmacovigilance, AP-HM, France
| | - Jean-Philippe Ranjeva
- Aix-Marseille Université, CNRS, Centre de Résonance Magnétique et Biologique et Médicale (CRMBM, 7339), Medical School of Marseille, 13005, Marseille, France; Assistance Publique - Hôpitaux de Marseille, Hôpital de la Timone, CEMEREM, Pôle d'Imagerie Médicale, CHU, 13005, Marseille, France
| | - Arnaud Le Troter
- Aix-Marseille Université, CNRS, Centre de Résonance Magnétique et Biologique et Médicale (CRMBM, 7339), Medical School of Marseille, 13005, Marseille, France; Assistance Publique - Hôpitaux de Marseille, Hôpital de la Timone, CEMEREM, Pôle d'Imagerie Médicale, CHU, 13005, Marseille, France
| | - Maxime Guye
- Aix-Marseille Université, CNRS, Centre de Résonance Magnétique et Biologique et Médicale (CRMBM, 7339), Medical School of Marseille, 13005, Marseille, France; Assistance Publique - Hôpitaux de Marseille, Hôpital de la Timone, CEMEREM, Pôle d'Imagerie Médicale, CHU, 13005, Marseille, France
| | - Jonathan Wirsich
- Aix-Marseille Université, CNRS, Centre de Résonance Magnétique et Biologique et Médicale (CRMBM, 7339), Medical School of Marseille, 13005, Marseille, France
| | - Pierre Payoux
- UMR 825 Inserm, Imagerie Cérébrale et Handicaps Neurologiques, Université Toulouse III Paul Sabatier, Toulouse, France
| | - David Bartrés-Faz
- Department of Psychiatry and Clinical Psychobiology, Faculty of Medicine, University of Barcelona and Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Catalunya, Spain
| | - Régis Bordet
- U1171 Inserm, CHU Lille, Degenerative and Vascular Cognitive Disorders, University of Lille, Lille, France
| | - Jill C Richardson
- Neurosciences Therapeutic Area Unit, GlaxoSmithKline R&D, Stevenage, UK
| | - Olivier Felician
- Aix-Marseille Université, Inserm, Institut de Neurosciences des Systèmes (INS) UMR_S 1106, 13005, Marseille, France; APHM, Timone, Service de Neurologie et Neuropsychologie, Hôpital Timone Adultes, Marseille, France
| | - Viktor Jirsa
- Aix-Marseille Université, Inserm, Institut de Neurosciences des Systèmes (INS) UMR_S 1106, 13005, Marseille, France
| | - Olivier Blin
- Aix-Marseille Université, Inserm, Institut de Neurosciences des Systèmes (INS) UMR_S 1106, 13005, Marseille, France; Service de Pharmacologie Clinique et Pharmacovigilance, AP-HM, France
| | - Mira Didic
- Aix-Marseille Université, Inserm, Institut de Neurosciences des Systèmes (INS) UMR_S 1106, 13005, Marseille, France; APHM, Timone, Service de Neurologie et Neuropsychologie, Hôpital Timone Adultes, Marseille, France
| | - Demian Battaglia
- Aix-Marseille Université, Inserm, Institut de Neurosciences des Systèmes (INS) UMR_S 1106, 13005, Marseille, France.
| |
Collapse
|
18
|
Battaglia D, Boudou T, Hansen ECA, Lombardo D, Chettouf S, Daffertshofer A, McIntosh AR, Zimmermann J, Ritter P, Jirsa V. Dynamic Functional Connectivity between order and randomness and its evolution across the human adult lifespan. Neuroimage 2020; 222:117156. [PMID: 32698027 DOI: 10.1016/j.neuroimage.2020.117156] [Citation(s) in RCA: 40] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2020] [Revised: 05/25/2020] [Accepted: 07/07/2020] [Indexed: 12/14/2022] Open
Abstract
Functional Connectivity (FC) during resting-state or task conditions is not static but inherently dynamic. Yet, there is no consensus on whether fluctuations in FC may resemble isolated transitions between discrete FC states rather than continuous changes. This quarrel hampers advancing the study of dynamic FC. This is unfortunate as the structure of fluctuations in FC can certainly provide more information about developmental changes, aging, and progression of pathologies. We merge the two perspectives and consider dynamic FC as an ongoing network reconfiguration, including a stochastic exploration of the space of possible steady FC states. The statistical properties of this random walk deviate both from a purely "order-driven" dynamics, in which the mean FC is preserved, and from a purely "randomness-driven" scenario, in which fluctuations of FC remain uncorrelated over time. Instead, dynamic FC has a complex structure endowed with long-range sequential correlations that give rise to transient slowing and acceleration epochs in the continuous flow of reconfiguration. Our analysis for fMRI data in healthy elderly revealed that dynamic FC tends to slow down and becomes less complex as well as more random with increasing age. These effects appear to be strongly associated with age-related changes in behavioural and cognitive performance.
Collapse
Affiliation(s)
- Demian Battaglia
- Université Aix-Marseille, INSERM UMR 1106, Institut de Neurosciences des Systèmes, F-13005, Marseille, France.
| | - Thomas Boudou
- Université Aix-Marseille, INSERM UMR 1106, Institut de Neurosciences des Systèmes, F-13005, Marseille, France; ENSTA ParisTech, F-91762, Palaiseau, France.
| | - Enrique C A Hansen
- Université Aix-Marseille, INSERM UMR 1106, Institut de Neurosciences des Systèmes, F-13005, Marseille, France; Institut de biologie de l'Ecole normale supérieure (IBENS), École Normale Supérieure, CNRS, INSERM, PSL Université Paris, F-75005, Paris, France.
| | - Diego Lombardo
- Université Aix-Marseille, INSERM UMR 1106, Institut de Neurosciences des Systèmes, F-13005, Marseille, France.
| | - Sabrina Chettouf
- Brain Simulation Section, Department of Neurology, Charité Universitätsmedizin and Berlin Institute of Health, D-10117, Berlin, Germany; Bernstein Center for Computational Neuroscience, D-10117, Berlin, Germany; Faculty of Behavioural and Movement Sciences, Vrije Universiteit Amsterdam, 1081 BT, Amsterdam, the Netherlands.
| | - Andreas Daffertshofer
- Faculty of Behavioural and Movement Sciences, Vrije Universiteit Amsterdam, 1081 BT, Amsterdam, the Netherlands.
| | - Anthony R McIntosh
- Rotman Research Institute, Baycrest Centre, Toronto, Ontario, M6A 2E1, Canada.
| | - Joelle Zimmermann
- Brain Simulation Section, Department of Neurology, Charité Universitätsmedizin and Berlin Institute of Health, D-10117, Berlin, Germany; Rotman Research Institute, Baycrest Centre, Toronto, Ontario, M6A 2E1, Canada.
| | - Petra Ritter
- Brain Simulation Section, Department of Neurology, Charité Universitätsmedizin and Berlin Institute of Health, D-10117, Berlin, Germany; Bernstein Center for Computational Neuroscience, D-10117, Berlin, Germany.
| | - Viktor Jirsa
- Université Aix-Marseille, INSERM UMR 1106, Institut de Neurosciences des Systèmes, F-13005, Marseille, France.
| |
Collapse
|
19
|
Castro S, El-Deredy W, Battaglia D, Orio P. Cortical ignition dynamics is tightly linked to the core organisation of the human connectome. PLoS Comput Biol 2020; 16:e1007686. [PMID: 32735580 PMCID: PMC7423150 DOI: 10.1371/journal.pcbi.1007686] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2020] [Revised: 08/12/2020] [Accepted: 06/15/2020] [Indexed: 12/04/2022] Open
Abstract
The capability of cortical regions to flexibly sustain an "ignited" state of activity has been discussed in relation to conscious perception or hierarchical information processing. Here, we investigate how the intrinsic propensity of different regions to get ignited is determined by the specific topological organisation of the structural connectome. More specifically, we simulated the resting-state dynamics of mean-field whole-brain models and assessed how dynamic multistability and ignition differ between a reference model embedding a realistic human connectome, and alternative models based on a variety of randomised connectome ensembles. We found that the strength of global excitation needed to first trigger ignition in a subset of regions is substantially smaller for the model embedding the empirical human connectome. Furthermore, when increasing the strength of excitation, the propagation of ignition outside of this initial core-which is able to self-sustain its high activity-is way more gradual than for any of the randomised connectomes, allowing for graded control of the number of ignited regions. We explain both these assets in terms of the exceptional weighted core-shell organisation of the empirical connectome, speculating that this topology of human structural connectivity may be attuned to support enhanced ignition dynamics.
Collapse
Affiliation(s)
- Samy Castro
- Centro Interdisciplinario de Neurociencias de Valparaíso, Universidad de Valparaíso, Valparaíso, Chile
- Programa de Doctorado en Ciencias, mención Neurociencia, Universidad de Valparaíso, Valparaíso, Chile
| | - Wael El-Deredy
- Centro de Investigación y Desarrollo en Ingeniería en Salud, Universidad de Valparaíso, Valparaíso, Chile
| | - Demian Battaglia
- Aix-Marseille Université, Institut de Neurosciences des Systèmes, INSERM UMR 1106, Marseille, France
| | - Patricio Orio
- Centro Interdisciplinario de Neurociencias de Valparaíso, Universidad de Valparaíso, Valparaíso, Chile
- Instituto de Neurociencias, Facultad de Ciencias, Universidad de Valparaíso, Valparaíso, Chile
| |
Collapse
|
20
|
Clawson W, Vicente AF, Ferraris M, Bernard C, Battaglia D, Quilichini PP. Computing hubs in the hippocampus and cortex. Sci Adv 2019; 5:eaax4843. [PMID: 31249875 PMCID: PMC6594769 DOI: 10.1126/sciadv.aax4843] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/27/2019] [Accepted: 05/17/2019] [Indexed: 06/09/2023]
Abstract
Neural computation occurs within large neuron networks in the dynamic context of varying brain states. Whether functions are performed by specific subsets of neurons and whether they occur in specific dynamical regimes remain poorly understood. Using high-density recordings in the hippocampus, medial entorhinal, and medial prefrontal cortex of the rat, we identify computing substates where specific computing hub neurons perform well-defined storage and sharing operations in a brain state-dependent manner. We retrieve distinct computing substates within each global brain state, such as REM and nonREM sleep. Half of recorded neurons act as computing hubs in at least one substate, suggesting that functional roles are not hardwired but reassigned at the second time scale. We identify sequences of substates whose temporal organization is dynamic and stands between order and disorder. We propose that global brain states constrain the language of neuronal computations by regulating the syntactic complexity of substate sequences.
Collapse
|
21
|
Vitale G, Pichiecchio A, Ormitti F, Tonduti D, Asaro A, Farina L, Piccolo B, Percesepe A, Bastianello S, Orcesi S, Battaglia D, Cereda C, Martelli P, Mine M, Pinelli L, Tartaglione T, Ghi T, Parrini E, Zuffardi O. Cortical malformations and COL4A1 mutation: Three new cases. Eur J Paediatr Neurol 2019; 23:410-417. [PMID: 30837194 DOI: 10.1016/j.ejpn.2019.02.006] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/25/2018] [Revised: 02/13/2019] [Accepted: 02/17/2019] [Indexed: 01/30/2023]
Abstract
AIM The COL4A1 gene (13q34) encodes the α1 chain of type IV collagen, a crucial component of the basal membrane. COL4A1 mutations have been identified as a cause of a multisystem disease. Brain MRI in COL4A1-mutated patients typically shows vascular abnormalities and white matter lesions. Cortical malformations (specifically schizencephaly) have also recently been described in these patients, suggesting that these, too, could be part of the phenotypic spectrum of COL4A1 mutations. The aim of our work was to retrospectively evaluate COL4A1-mutated subjects diagnosed at our centers in order to assess the frequency and define the type of cortical malformations encountered in these individuals. METHOD We retrospectively reviewed MRI data of 18 carriers of COL4A1 mutations diagnosed in our centers between 2010 and 2016. RESULTS We identified polymicrogyria in two patients, and schizencephaly in the mother of a further patient. INTERPRETATION Our findings confirm that cortical malformations should be considered to fall within the phenotypic spectrum of COL4A1 mutations and show that not only schizencephaly but also polymicrogyria can also be found in mutated individuals. Although further studies are needed to clarify the underlying pathogenetic mechanism, independently of this, the timing of the brain damage could be the crucial factor determining the type of lesion.
Collapse
Affiliation(s)
- G Vitale
- Department of Brain and Behavioral Sciences, University of Pavia, Pavia, Italy
| | - A Pichiecchio
- Department of Brain and Behavioral Sciences, University of Pavia, Pavia, Italy; Department of Neuroradiology, IRCCS Mondino Foundation, Pavia, Italy.
| | - F Ormitti
- Neuroradiology Unit, Azienda Ospedaliero-Universitaria di Parma, Parma, Italy
| | - D Tonduti
- Child Neurology Unit, V. Buzzi Children's Hospital, Milan, Italy
| | - A Asaro
- Genomic and Post-Genomic Center, IRCCS Mondino Foundation, Pavia, Italy
| | - L Farina
- Department of Neuroradiology, IRCCS Mondino Foundation, Pavia, Italy
| | - B Piccolo
- Child Neuropsychiatry Unit, Azienda Ospedaliero-Universitaria di Parma, Parma, Italy
| | - A Percesepe
- Medical Genetics, Azienda Ospedaliero-Universitaria di Parma, Parma, Italy
| | - S Bastianello
- Department of Brain and Behavioral Sciences, University of Pavia, Pavia, Italy; Department of Neuroradiology, IRCCS Mondino Foundation, Pavia, Italy
| | - S Orcesi
- Department of Brain and Behavioral Sciences, University of Pavia, Pavia, Italy; Child and Adolescence Neurology Unit, IRCCS Mondino Foundation, Pavia, Italy
| | | | | | | | | | | | | | | | | | | | | |
Collapse
|
22
|
Bertini E, Verrigni D, Battaglia D, Torraco A, Figa Talamanca L, Carrozzo R, Diodato D, D'Amico A, Papetti L, Ghezzi D, Ardissone A, Lamperti C, Legati A, Goffrini P. MITOCHONDRIAL DISEASES (Posters). Neuromuscul Disord 2018. [DOI: 10.1016/j.nmd.2018.06.214] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
|
23
|
De Caterina R, Giannessi D, Boem A, Bernini W, Battaglia D, Michelassi C, Dell’Amico F, L’Abbate A, Patrignani P, Patrono C. Equal Antiplatelet Effects of Aspirin 50 or 324 mg/Day in Patients After Acute Myocardial Infarction. Thromb Haemost 2018. [DOI: 10.1055/s-0038-1657890] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Abstract
SummaryThis study explores the effects on some hematological parameters of a low-dose aspirin regimen (50 mg/day) versus a conventional aspirin treatment with reported antithrombotic efficacy (324 mg/day), in patients with acute myocardial infarction. Fifteen patients were randomized into 3 equal groups receiving 50 mg or 324 mg aspirin or placebo, daily for 21 days. Compared with placebo, bleeding time was significantly and similarly prolonged with both aspirin doses (+ 71 ± 22% and + 69 ± 20%, mean ± S.D.). Aspirin 50 mg/day suppressed arachidonate-induced platelet aggregation and secondary phase aggregation after ADP and adrenaline. Collagen aggregation was inhibited by 44 ± 15%. In no case were differences in the antiplatelet effects of the two doses observed. The effects of 50 mg/day persisted without attenuation during the observation period. Platelet thromboxane B2 generation during arachidonate-induced aggregation was inhibited by 95 ± 2 and 99 ± 1% compared to placebo group after 50 and 324 mg/day, respectively (P between doses <0.05). No change was observed with any treatment in coagulation time, prothrombin time or plasma thromboplastin time. Thus, in patients with acute myocardial infarction, the antiplatelet effects of aspirin 50 mg/day are stable over time and superimposable on those of 324 mg/day. The antithrombotic efficacy of aspirin 50 mg/day remains to be tested clinically.
Collapse
Affiliation(s)
- R De Caterina
- The C.N.R. Institute of Clinical Physiology, Pisa, Italy
| | - D Giannessi
- The C.N.R. Institute of Clinical Physiology, Pisa, Italy
| | - A Boem
- The Division of Cardiovascular Medicine, Spedali Riuniti di S. Chiara, Pisa, Italy
| | - W Bernini
- The C.N.R. Institute of Clinical Physiology, Pisa, Italy
| | - D Battaglia
- The C.N.R. Institute of Clinical Physiology, Pisa, Italy
| | - C Michelassi
- The C.N.R. Institute of Clinical Physiology, Pisa, Italy
| | - F Dell’Amico
- The C.N.R. Institute of Clinical Physiology, Pisa, Italy
| | - A L’Abbate
- The C.N.R. Institute of Clinical Physiology, Pisa, Italy
| | - P Patrignani
- The Institute of Pharmacology, Universitá Cattolica del Sacro Cuore, Roma, Italy
| | - C Patrono
- The Institute of Pharmacology, Universitá Cattolica del Sacro Cuore, Roma, Italy
| |
Collapse
|
24
|
Palmigiano A, Geisel T, Wolf F, Battaglia D. Flexible information routing by transient synchrony. Nat Neurosci 2017; 20:1014-1022. [PMID: 28530664 DOI: 10.1038/nn.4569] [Citation(s) in RCA: 152] [Impact Index Per Article: 21.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2016] [Accepted: 04/25/2017] [Indexed: 12/20/2022]
Abstract
Perception, cognition and behavior rely on flexible communication between microcircuits in distinct cortical regions. The mechanisms underlying rapid information rerouting between such microcircuits are still unknown. It has been proposed that changing patterns of coherence between local gamma rhythms support flexible information rerouting. The stochastic and transient nature of gamma oscillations in vivo, however, is hard to reconcile with such a function. Here we show that models of cortical circuits near the onset of oscillatory synchrony selectively route input signals despite the short duration of gamma bursts and the irregularity of neuronal firing. In canonical multiarea circuits, we find that gamma bursts spontaneously arise with matched timing and frequency and that they organize information flow by large-scale routing states. Specific self-organized routing states can be induced by minor modulations of background activity.
Collapse
Affiliation(s)
- Agostina Palmigiano
- Max Planck Institute for Dynamics and Self-organization, Göttingen, Germany.,Bernstein Center for Computational Neuroscience, Göttingen, Germany.,Institute for Nonlinear Dynamics, Georg-August University School of Science, Göttingen, Germany.,SFB-889 Cellular Mechanisms of Sensory Processing, Göttingen, Germany
| | - Theo Geisel
- Max Planck Institute for Dynamics and Self-organization, Göttingen, Germany.,Bernstein Center for Computational Neuroscience, Göttingen, Germany.,Institute for Nonlinear Dynamics, Georg-August University School of Science, Göttingen, Germany
| | - Fred Wolf
- Max Planck Institute for Dynamics and Self-organization, Göttingen, Germany.,Bernstein Center for Computational Neuroscience, Göttingen, Germany.,Institute for Nonlinear Dynamics, Georg-August University School of Science, Göttingen, Germany.,SFB-889 Cellular Mechanisms of Sensory Processing, Göttingen, Germany
| | - Demian Battaglia
- Bernstein Center for Computational Neuroscience, Göttingen, Germany.,Aix-Marseille Université, Inserm, Institut de Neurosciences des Systèmes, Marseille, France
| |
Collapse
|
25
|
Abstract
Peer review is the cornerstone of scholarly publishing and it is essential that peer reviewers are appointed on the basis of their expertise alone. However, it is difficult to check for any bias in the peer-review process because the identity of peer reviewers generally remains confidential. Here, using public information about the identities of 9000 editors and 43000 reviewers from the Frontiers series of journals, we show that women are underrepresented in the peer-review process, that editors of both genders operate with substantial same-gender preference (homophily), and that the mechanisms of this homophily are gender-dependent. We also show that homophily will persist even if numerical parity between genders is reached, highlighting the need for increased efforts to combat subtler forms of gender bias in scholarly publishing. DOI:http://dx.doi.org/10.7554/eLife.21718.001
Collapse
Affiliation(s)
- Markus Helmer
- Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany.,Bernstein Center for Computational Neuroscience, Göttingen, Germany.,Yale University, New Haven, United States
| | - Manuel Schottdorf
- Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany.,Bernstein Center for Computational Neuroscience, Göttingen, Germany
| | - Andreas Neef
- Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany.,Bernstein Center for Computational Neuroscience, Göttingen, Germany
| | - Demian Battaglia
- Bernstein Center for Computational Neuroscience, Göttingen, Germany.,Institute for Systems Neuroscience, Aix-Marseille University, Marseille, France
| |
Collapse
|
26
|
Abstract
Flexible information routing fundamentally underlies the function of many biological and artificial networks. Yet, how such systems may specifically communicate and dynamically route information is not well understood. Here we identify a generic mechanism to route information on top of collective dynamical reference states in complex networks. Switching between collective dynamics induces flexible reorganization of information sharing and routing patterns, as quantified by delayed mutual information and transfer entropy measures between activities of a network's units. We demonstrate the power of this mechanism specifically for oscillatory dynamics and analyse how individual unit properties, the network topology and external inputs co-act to systematically organize information routing. For multi-scale, modular architectures, we resolve routing patterns at all levels. Interestingly, local interventions within one sub-network may remotely determine nonlocal network-wide communication. These results help understanding and designing information routing patterns across systems where collective dynamics co-occurs with a communication function. Flexible information routing underlies the function of many biological and artificial networks. Here, the authors present a theoretical framework that shows how information can be flexibly routed across networks using collective reference dynamics and how local changes may induce remote rerouting.
Collapse
Affiliation(s)
- Christoph Kirst
- Network Dynamics, Max Planck Institute for Dynamics and Self-Organization (MPIDS), Göttingen 37077, Germany.,Nonlinear Dynamics, Max Planck Institute for Dynamics and Self-Organization (MPIDS), Göttingen 37077, Germany.,Institute for Nonlinear Dynamics, Georg-August University Göttingen, Göttingen 37077, Germany.,Bernstein Center for Computational Neuroscience (BCCN), Göttingen 37077, Germany.,Center for Physics and Biology, The Rockefeller University, New York, New York 10065, USA
| | - Marc Timme
- Network Dynamics, Max Planck Institute for Dynamics and Self-Organization (MPIDS), Göttingen 37077, Germany.,Institute for Nonlinear Dynamics, Georg-August University Göttingen, Göttingen 37077, Germany.,Bernstein Center for Computational Neuroscience (BCCN), Göttingen 37077, Germany
| | - Demian Battaglia
- Université Aix-Marseille, INSERM UMR 1106, Institut de Neurosciences des Systémes, Marseille 13005, France
| |
Collapse
|
27
|
Helmer M, Kozyrev V, Stephan V, Treue S, Geisel T, Battaglia D. Model-Free Estimation of Tuning Curves and Their Attentional Modulation, Based on Sparse and Noisy Data. PLoS One 2016; 11:e0146500. [PMID: 26785378 PMCID: PMC4718600 DOI: 10.1371/journal.pone.0146500] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2015] [Accepted: 12/17/2015] [Indexed: 11/23/2022] Open
Abstract
Tuning curves are the functions that relate the responses of sensory neurons to various values within one continuous stimulus dimension (such as the orientation of a bar in the visual domain or the frequency of a tone in the auditory domain). They are commonly determined by fitting a model e.g. a Gaussian or other bell-shaped curves to the measured responses to a small subset of discrete stimuli in the relevant dimension. However, as neuronal responses are irregular and experimental measurements noisy, it is often difficult to determine reliably the appropriate model from the data. We illustrate this general problem by fitting diverse models to representative recordings from area MT in rhesus monkey visual cortex during multiple attentional tasks involving complex composite stimuli. We find that all models can be well-fitted, that the best model generally varies between neurons and that statistical comparisons between neuronal responses across different experimental conditions are affected quantitatively and qualitatively by specific model choices. As a robust alternative to an often arbitrary model selection, we introduce a model-free approach, in which features of interest are extracted directly from the measured response data without the need of fitting any model. In our attentional datasets, we demonstrate that data-driven methods provide descriptions of tuning curve features such as preferred stimulus direction or attentional gain modulations which are in agreement with fit-based approaches when a good fit exists. Furthermore, these methods naturally extend to the frequent cases of uncertain model selection. We show that model-free approaches can identify attentional modulation patterns, such as general alterations of the irregular shape of tuning curves, which cannot be captured by fitting stereotyped conventional models. Finally, by comparing datasets across different conditions, we demonstrate effects of attention that are cell- and even stimulus-specific. Based on these proofs-of-concept, we conclude that our data-driven methods can reliably extract relevant tuning information from neuronal recordings, including cells whose seemingly haphazard response curves defy conventional fitting approaches.
Collapse
Affiliation(s)
- Markus Helmer
- Max Planck Institute for Dynamics and Self-Organization, Department of Nonlinear Dynamics, Göttingen, Germany
- Bernstein Center for Computational Neuroscience, Göttingen, Germany
- * E-mail:
| | - Vladislav Kozyrev
- Institute of Neuroinformatics, Ruhr-University Bochum, Bochum, Germany
- Cognitive Neuroscience Laboratory, German Primate Center, Göttingen, Germany
| | - Valeska Stephan
- Bernstein Center for Computational Neuroscience, Göttingen, Germany
- Cognitive Neuroscience Laboratory, German Primate Center, Göttingen, Germany
| | - Stefan Treue
- Bernstein Center for Computational Neuroscience, Göttingen, Germany
- Cognitive Neuroscience Laboratory, German Primate Center, Göttingen, Germany
| | - Theo Geisel
- Max Planck Institute for Dynamics and Self-Organization, Department of Nonlinear Dynamics, Göttingen, Germany
- Bernstein Center for Computational Neuroscience, Göttingen, Germany
| | - Demian Battaglia
- Bernstein Center for Computational Neuroscience, Göttingen, Germany
- Institut de Neurosciences des Systèmes, Aix-Marseille Université, Marseille, France
| |
Collapse
|
28
|
Wadewitz P, Hammerschmidt K, Battaglia D, Witt A, Wolf F, Fischer J. Characterizing Vocal Repertoires--Hard vs. Soft Classification Approaches. PLoS One 2015; 10:e0125785. [PMID: 25915039 PMCID: PMC4411004 DOI: 10.1371/journal.pone.0125785] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2014] [Accepted: 03/24/2015] [Indexed: 11/18/2022] Open
Abstract
To understand the proximate and ultimate causes that shape acoustic communication in animals, objective characterizations of the vocal repertoire of a given species are critical, as they provide the foundation for comparative analyses among individuals, populations and taxa. Progress in this field has been hampered by a lack of standard in methodology, however. One problem is that researchers may settle on different variables to characterize the calls, which may impact on the classification of calls. More important, there is no agreement how to best characterize the overall structure of the repertoire in terms of the amount of gradation within and between call types. Here, we address these challenges by examining 912 calls recorded from wild chacma baboons (Papio ursinus). We extracted 118 acoustic variables from spectrograms, from which we constructed different sets of acoustic features, containing 9, 38, and 118 variables; as well 19 factors derived from principal component analysis. We compared and validated the resulting classifications of k-means and hierarchical clustering. Datasets with a higher number of acoustic features lead to better clustering results than datasets with only a few features. The use of factors in the cluster analysis resulted in an extremely poor resolution of emerging call types. Another important finding is that none of the applied clustering methods gave strong support to a specific cluster solution. Instead, the cluster analysis revealed that within distinct call types, subtypes may exist. Because hard clustering methods are not well suited to capture such gradation within call types, we applied a fuzzy clustering algorithm. We found that this algorithm provides a detailed and quantitative description of the gradation within and between chacma baboon call types. In conclusion, we suggest that fuzzy clustering should be used in future studies to analyze the graded structure of vocal repertoires. Moreover, the use of factor analyses to reduce the number of acoustic variables should be discouraged.
Collapse
Affiliation(s)
- Philip Wadewitz
- Cognitive Ethology Laboratory, German Primate Center, Göttingen, Germany
- Theoretical Neurophysics, Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany
- Bernstein Center for Computational Neuroscience, Göttingen, Germany
| | - Kurt Hammerschmidt
- Cognitive Ethology Laboratory, German Primate Center, Göttingen, Germany
| | - Demian Battaglia
- Theoretical Neurophysics, Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany
- Bernstein Center for Computational Neuroscience, Göttingen, Germany
- Theoretical Neurosciences Group, Institute for Systems Neuroscience, Marseille, France
| | - Annette Witt
- Theoretical Neurophysics, Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany
- Bernstein Center for Computational Neuroscience, Göttingen, Germany
| | - Fred Wolf
- Theoretical Neurophysics, Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany
- Bernstein Center for Computational Neuroscience, Göttingen, Germany
| | - Julia Fischer
- Cognitive Ethology Laboratory, German Primate Center, Göttingen, Germany
- Bernstein Center for Computational Neuroscience, Göttingen, Germany
| |
Collapse
|
29
|
Re D, Augusti G, Battaglia D, Giannì AB, Augusti D. Is a new sonic toothbrush more effective in plaque removal than a manual toothbrush? Eur J Paediatr Dent 2015; 16:13-18. [PMID: 25793947] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
AIM Powered or manual toothbrushes are daily-used instrument in the Western area for the control and removal of bacterial biofilm. Among powered-toothbrushes, sonic technology has shown to produce fluid turbulent activity that might assist in plaque removal; however, limited knowledge is available in-vivo. The objectives of this study were to compare the plaque removal efficacy of two different toothbrushes in a population not familiar with sonic technology, and to collect and analyse data regarding oral hygiene habits. The null-hypothesis was that a sonic toothbrush is able to remove a superior amount of plaque compared to the manual type. MATERIALS AND METHODS Forty young adult patients were enrolled in the study. A single-cohort crossover clinical trial was designed. For each patient, three appointments were scheduled: the first (T0) was used for oral care education and explanations of toothbrushes techniques, for a preliminary professional hygiene session, and for delivery of a questionnaire; at one week (T1), plaque evaluation was performed (Turesky modification of the Quigley and Hein index) at baseline and after asking patients to brush with the randomly selected manual or sonic device. At the last appointment (week 3, T2), the same plaque evaluations of T1 were repeated asking patients to brush with the other toothbrush. Entire mouth indexes were calculated and mean reductions in whole mouth plaque scores were obtained (pre-brushing minus post-brushing values) for the two tested toothbrushes. Multiple ANOVA tests (p = 0.05 ) were used 1) to compare plaque levels between male and female subjects at baseline and post-brushing, regardless the type of toothbrush, and 2) to differentiate between mean reductions in whole mouth plaque scores according to the type of toothbrush (manual versus sonic). The study population was subjected to descriptive statistical analysis; potential relationships between socio-demographic variables and obtained plaque scores were evaluated (Mann-Whitney and Kruskal-Wallis tests). RESULTS Full-mouth plaque levels were reduced at post-brushing sessions, regardless the device, by approximately 62% (p<0.0001). Mean plaque index reductions for manual and sonic toothbrush were of 1.05 ± 0.22 and 1.19 ± 0.37, respectively. A statistically significant difference was found between the two devices (p = 0.0342). The powered sonic toothbrush removed about 10% more plaque than the manual type. From the collected questionnaire financial data, willingness to pay (WTP) values expressing economic efforts of patients for the purchase of toothbrushes were of Euros 4.83 ± 3.86 and of Euros 54.75 ± 36, for the manual and sonic devices, respectively. CONCLUSION Within the limitations of the study, in subjects without any previous experience of a similar technology, the single use of the sonic toothbrush showed a significantly greater plaque reduction compared to the manual traditional toothbrush (null-hypothesis accepted).
Collapse
Affiliation(s)
- D Re
- Division of Oral Rehabilitation, Istituto Stomatologico Italiano, University of Milan, Italy
| | - G Augusti
- Division of Oral Rehabilitation, Istituto Stomatologico Italiano, University of Milan, Italy
| | - D Battaglia
- Division of Oral Rehabilitation, Istituto Stomatologico Italiano, University of Milan, Italy
| | - A B Giannì
- Maxillo-Facial and Odontostomatology Unit, Fondazione Cà Granda IRCCS Ospedale Maggiore Policlinico, Milan, Italy
| | - D Augusti
- Division of Oral Rehabilitation, Istituto Stomatologico Italiano, University of Milan, Italy
| |
Collapse
|
30
|
Ricci D, Chieffo D, Battaglia D, Brogna C, Contaldo I, De Clemente V, Losito E, Dravet C, Mercuri E, Guzzetta F. A prospective longitudinal study on visuo-cognitive development in Dravet syndrome: Is there a “dorsal stream vulnerability”? Epilepsy Res 2015; 109:57-64. [DOI: 10.1016/j.eplepsyres.2014.10.009] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2014] [Revised: 10/06/2014] [Accepted: 10/18/2014] [Indexed: 11/16/2022]
|
31
|
Hansen ECA, Battaglia D, Spiegler A, Deco G, Jirsa VK. Functional connectivity dynamics: Modeling the switching behavior of the resting state. Neuroimage 2015; 105:525-35. [PMID: 25462790 DOI: 10.1016/j.neuroimage.2014.11.001] [Citation(s) in RCA: 308] [Impact Index Per Article: 34.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2014] [Revised: 10/20/2014] [Accepted: 11/03/2014] [Indexed: 02/05/2023] Open
Affiliation(s)
- Enrique C A Hansen
- Université Aix-Marseille, INSERM UMR 1106, Institut de Neurosciences des Systèmes, 27Bd Jean Moulin, 13005 Marseille, France.
| | - Demian Battaglia
- Université Aix-Marseille, INSERM UMR 1106, Institut de Neurosciences des Systèmes, 27Bd Jean Moulin, 13005 Marseille, France; Bernstein Center for Computational Neuroscience, Am Faßberg 17, 37077 Göttingen, Germany.
| | - Andreas Spiegler
- Université Aix-Marseille, INSERM UMR 1106, Institut de Neurosciences des Systèmes, 27Bd Jean Moulin, 13005 Marseille, France.
| | - Gustavo Deco
- Center for Brain and Cognition, Universitat Pompeu Fabra, Barcelona, Spain.
| | - Viktor K Jirsa
- Université Aix-Marseille, INSERM UMR 1106, Institut de Neurosciences des Systèmes, 27Bd Jean Moulin, 13005 Marseille, France.
| |
Collapse
|
32
|
Borgonovo AE, Rigaldo F, Battaglia D, Re D, Giannì AB. Digital device in postextraction implantology: a clinical case presentation. Case Rep Dent 2014; 2014:327368. [PMID: 25610665 PMCID: PMC4295155 DOI: 10.1155/2014/327368] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2014] [Revised: 11/28/2014] [Accepted: 12/10/2014] [Indexed: 12/03/2022] Open
Abstract
Aim. The aim of this work is to describe a case of immediate implant placement after extraction of the upper right first premolar, with the use of CAD/CAM technology, which allows an early digital impression of the implant site with an intraoral scanner (MHT 3D Progress, Verona, Italy). Case Report. A 46-year-old female was referred with a disorder caused by continuous debonding of the prosthetic crown on the upper right first premolar. Clinically, there were no signs, and the evaluation of the periapical radiograph showed a fracture of the root, with a mesial well-defined lesion of the hard tissue of the upper right first premolar, as the radiolucent area affected the root surface of the tooth. It was decided, in accordance with the patient, that the tooth would be extracted and the implant (Primer, Edierre implant system, Genoa, Italy) with diameter of 4.2 mm and length of 13 mm would be inserted. After the insertion of the implant, it was screwed to the scan abutment, and a scan was taken using an intraoral scanner (MHT 3D Progress, Verona, Italy). The scanned images were processed with CAD/CAM software (Exocad DentalCAD, Darmstadt, Germany) and the temporary crown was digitally drawn (Dental Knowledge, Milan, Italy) and then sent to the milling machine for production with a composite monoblock. After 4 months, when the implant was osteointegrated, it was not necessary to take another dental impression, and the definitive crown could be screwed in. Conclusion. The CAD/CAM technology is especially helpful in postextraction implant for aesthetic rehabilitation, as it is possible to immediately fix a provisional crown with an anatomic shape that allows an optimal healing process of the tissues. Moreover, the removal of healing abutments, and the use of impression copings, impression materials, and dental stone became unnecessary, enabling the reduction of the chair time, component cost, and patient's discomfort. However, it is still necessary for scientific research to continue to carry out studies on this procedure, in order to improve the accuracy, the reliability, and the reproducibility of the results.
Collapse
Affiliation(s)
- A. E. Borgonovo
- School of Oral Surgery, Istituto Stomatologico Italiano, University of Milan, Milan, Italy
| | - F. Rigaldo
- Department of Oral Rehabilitation, Istituto Stomatologico Italiano, Milan, Italy
| | - D. Battaglia
- Department of Oral Rehabilitation, Istituto Stomatologico Italiano, Milan, Italy
| | - D. Re
- Department of Oral Rehabilitation, Istituto Stomatologico Italiano, Milan, Italy
| | - A. B. Giannì
- Department of Maxillofacial Surgery, Fondazione IRCCS Ospedale Maggiore Policlinico, University of Milan, Milan, Italy
| |
Collapse
|
33
|
Tamburrini G, Battaglia D, Albamonte E, Contaldo I, Massimi L, Caldarelli M, Di Rocco C. Surgery for posterior quadrantic cortical dysplasia. A review. Childs Nerv Syst 2014; 30:1859-68. [PMID: 25296547 DOI: 10.1007/s00381-014-2449-9] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/15/2014] [Accepted: 05/19/2014] [Indexed: 10/24/2022]
Abstract
BACKGROUND Posterior quadrant dysplastic lesions represent 3-15 % of multilobar cortical developmental pathologies, 3-5 % of all the indications to surgery for epilepsy resistant to medical treatment. OBJECTIVE AND METHODS The objective of this study is to review the pertinent literature related to the presurgical clinical, neurophysiological, and neuroradiological evaluation of children affected by posterior quadrant dysplasia in order to discuss the intraoperative management and the different surgical techniques that have been proposed to treat this condition as well as factors related with postsurgical seizure outcome. RESULTS AND CONCLUSIONS Seizures appear most commonly in infants and rapidly progress to a catastrophic course. They are mostly represented by focal seizures and spasms. Surface interictal video-EEG is characterized by background flattening and paroxysmal discharges prevalent on the affected side but not unusually extending to the controlateral hemisphere. The last occasionally shows an independent irritative activity in spite of the absence of further visible structural abnormalities. Most of the patients have visual field or visual attention deficits at diagnosis. Resective as well as disconnective surgical procedures have been proposed for the management of this condition, none of them having shown clear advantages in terms of seizure outcome and complications. Intraoperative electrocorticography (EcoG) and sensorimotor monitoring have been successfully used to improve the localization of the epileptic focus and reduce surgical complication rates. Undistincted lesion borders, independent controlateral ictal or/and interictal EEG activity, and incomplete resections/disconnections are among the main factors that have resulted to be associated with a worse seizure outcome.
Collapse
Affiliation(s)
- G Tamburrini
- Pediatric Neurosurgery Unit, Institute of Neurosurgery, Catholic University Medical School, Largo "A. Gemelli", 8, 00168, Rome, Italy,
| | | | | | | | | | | | | |
Collapse
|
34
|
Orlandi JG, Stetter O, Soriano J, Geisel T, Battaglia D. Transfer entropy reconstruction and labeling of neuronal connections from simulated calcium imaging. PLoS One 2014; 9:e98842. [PMID: 24905689 PMCID: PMC4048312 DOI: 10.1371/journal.pone.0098842] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2013] [Accepted: 05/08/2014] [Indexed: 11/23/2022] Open
Abstract
Neuronal dynamics are fundamentally constrained by the underlying structural network architecture, yet much of the details of this synaptic connectivity are still unknown even in neuronal cultures in vitro. Here we extend a previous approach based on information theory, the Generalized Transfer Entropy, to the reconstruction of connectivity of simulated neuronal networks of both excitatory and inhibitory neurons. We show that, due to the model-free nature of the developed measure, both kinds of connections can be reliably inferred if the average firing rate between synchronous burst events exceeds a small minimum frequency. Furthermore, we suggest, based on systematic simulations, that even lower spontaneous inter-burst rates could be raised to meet the requirements of our reconstruction algorithm by applying a weak spatially homogeneous stimulation to the entire network. By combining multiple recordings of the same in silico network before and after pharmacologically blocking inhibitory synaptic transmission, we show then how it becomes possible to infer with high confidence the excitatory or inhibitory nature of each individual neuron.
Collapse
Affiliation(s)
- Javier G. Orlandi
- Departament d'Estructura i Consituents de la Matèria, Universitat de Barcelona, Barcelona, Spain
| | - Olav Stetter
- Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany
- Georg-August-Universität, Physics Department, Göttingen, Germany
- Bernstein Center for Computational Neuroscience, Göttingen, Germany
| | - Jordi Soriano
- Departament d'Estructura i Consituents de la Matèria, Universitat de Barcelona, Barcelona, Spain
| | - Theo Geisel
- Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany
- Georg-August-Universität, Physics Department, Göttingen, Germany
- Bernstein Center for Computational Neuroscience, Göttingen, Germany
| | - Demian Battaglia
- Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany
- Bernstein Center for Computational Neuroscience, Göttingen, Germany
- Institut de Neurosciences des Systèmes, Inserm UMR1106, Aix-Marseille Université, Marseille, France
- * E-mail:
| |
Collapse
|
35
|
Borgonovo A, Vavassori V, Monticelli L, Battaglia D, Rigaldo F, Re D. Zirconia dental implants: Success assessment in a 4-year follow-up. Dent Mater 2014. [DOI: 10.1016/j.dental.2014.08.258] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|
36
|
Battaglia D, Cerutti F, Augusti G, Tranchida F, Augusti D, Re D. Effects of sandblasting on early bond strength. Dent Mater 2014. [DOI: 10.1016/j.dental.2014.08.257] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
|
37
|
Vassalle C, Maffei S, Bianchi S, Landi P, Vannucci A, Battaglia D, Carpeggiani C. Age- and gender-specific differences in the prognostic value of resting heart rate for cardiovascular events in patients referred for coronary angiography. Eur Heart J 2013. [DOI: 10.1093/eurheartj/eht308.p1555] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
|
38
|
Stetter O, Orlandi J, Soriano J, Battaglia D, Geisel T. Network reconstruction from calcium imaging data of spontaneously bursting neuronal activity. BMC Neurosci 2013; 14. [PMCID: PMC3704386 DOI: 10.1186/1471-2202-14-s1-p139] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Affiliation(s)
- Olav Stetter
- Max Planck Institute for Dynamics and Self-Organization, Göttingen, 37073, Germany,Bernstein Center for Computational Neuroscience, Göttingen, 37073, Germany
| | | | | | - Demian Battaglia
- Max Planck Institute for Dynamics and Self-Organization, Göttingen, 37073, Germany,Bernstein Center for Computational Neuroscience, Göttingen, 37073, Germany
| | - Theo Geisel
- Max Planck Institute for Dynamics and Self-Organization, Göttingen, 37073, Germany,Bernstein Center for Computational Neuroscience, Göttingen, 37073, Germany
| |
Collapse
|
39
|
Helmer M, Kozyrev V, Lochte A, Treue S, Geisel T, Battaglia D. Non-multiplicative attentional modulation patterns in area MT. BMC Neurosci 2013. [PMCID: PMC3704476 DOI: 10.1186/1471-2202-14-s1-p20] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Affiliation(s)
- Markus Helmer
- Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany,Bernstein Center for Computational Neuroscience, Göttingen, Germany
| | - Vladislav Kozyrev
- Cognitive Neuroscience Laboratory, German Primate Center, Göttingen, Germany,Institute of Neuroinformatics, Ruhr-University, Bochum, Germany
| | - Anja Lochte
- Cognitive Neuroscience Laboratory, German Primate Center, Göttingen, Germany,Bernstein Center for Computational Neuroscience, Göttingen, Germany
| | - Stefan Treue
- Cognitive Neuroscience Laboratory, German Primate Center, Göttingen, Germany,Bernstein Center for Computational Neuroscience, Göttingen, Germany
| | - Theo Geisel
- Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany,Bernstein Center for Computational Neuroscience, Göttingen, Germany
| | - Demian Battaglia
- Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany,Bernstein Center for Computational Neuroscience, Göttingen, Germany
| |
Collapse
|
40
|
Gutch HW, Battaglia D, Karagiannis A, Gallopin T, Cauli B. Beyond the frontiers of neuronal types: fuzzy classification of interneurons. BMC Neurosci 2013. [PMCID: PMC3704745 DOI: 10.1186/1471-2202-14-s1-p56] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
|
41
|
Witt A, Palmigiano A, Neef A, El Hady A, Wolf F, Battaglia D. Controlling the oscillation phase through precisely timed closed-loop optogenetic stimulation: a computational study. Front Neural Circuits 2013; 7:49. [PMID: 23616748 PMCID: PMC3627980 DOI: 10.3389/fncir.2013.00049] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2012] [Accepted: 03/07/2013] [Indexed: 11/24/2022] Open
Abstract
Dynamic oscillatory coherence is believed to play a central role in flexible communication between brain circuits. To test this communication-through-coherence hypothesis, experimental protocols that allow a reliable control of phase-relations between neuronal populations are needed. In this modeling study, we explore the potential of closed-loop optogenetic stimulation for the control of functional interactions mediated by oscillatory coherence. The theory of non-linear oscillators predicts that the efficacy of local stimulation will depend not only on the stimulation intensity but also on its timing relative to the ongoing oscillation in the target area. Induced phase-shifts are expected to be stronger when the stimulation is applied within specific narrow phase intervals. Conversely, stimulations with the same or even stronger intensity are less effective when timed randomly. Stimulation should thus be properly phased with respect to ongoing oscillations (in order to optimally perturb them) and the timing of the stimulation onset must be determined by a real-time phase analysis of simultaneously recorded local field potentials (LFPs). Here, we introduce an electrophysiologically calibrated model of Channelrhodopsin 2 (ChR2)-induced photocurrents, based on fits holding over two decades of light intensity. Through simulations of a neural population which undergoes coherent gamma oscillations—either spontaneously or as an effect of continuous optogenetic driving—we show that precisely-timed photostimulation pulses can be used to shift the phase of oscillation, even at transduction rates smaller than 25%. We consider then a canonic circuit with two inter-connected neural populations oscillating with gamma frequency in a phase-locked manner. We demonstrate that photostimulation pulses applied locally to a single population can induce, if precisely phased, a lasting reorganization of the phase-locking pattern and hence modify functional interactions between the two populations.
Collapse
Affiliation(s)
- Annette Witt
- Cognitive Neuroscience Department, German Primate Center, Bernstein Center for Computational Neuroscience, Max Planck Institute for Dynamics and Self-Organization Göttingen, Germany
| | | | | | | | | | | |
Collapse
|
42
|
Abstract
Cortical neurons and, particularly, inhibitory interneurons display a large diversity of morphological, synaptic, electrophysiological, and molecular properties, as well as diverse embryonic origins. Various authors have proposed alternative classification schemes that rely on the concomitant observation of several multimodal features. However, a broad variability is generally observed even among cells that are grouped into a same class. Furthermore, the attribution of specific neurons to a single defined class is often difficult, because individual properties vary in a highly graded fashion, suggestive of continua of features between types. Going beyond the description of representative traits of distinct classes, we focus here on the analysis of atypical cells. We introduce a novel paradigm for neuronal type classification, assuming explicitly the existence of a structured continuum of diversity. Our approach, grounded on the theory of fuzzy sets, identifies a small optimal number of model archetypes. At the same time, it quantifies the degree of similarity between these archetypes and each considered neuron. This allows highlighting archetypal cells, which bear a clear similarity to a single model archetype, and edge cells, which manifest a convergence of traits from multiple archetypes.
Collapse
Affiliation(s)
- Demian Battaglia
- Department of Nonlinear Dynamics, Max Planck Institute for Dynamics and Self-Organization (MPIDS) Göttingen, Germany ; Bernstein Center for Computational Neuroscience Göttingen, Germany
| | | | | | | | | |
Collapse
|
43
|
Ono M, Bell M, Kaita R, Kugel H, Ahn JW, Allain J, Battaglia D, Bell R, Canik J, Ding S, Gerhardt S, Gray T, Guttenfelder W, Hosea J, Jaworski M, Kallman J, Kaye S, LeBlanc B, Maingi R, Mansfield D, McLean A, Menard J, Muller D, Nelson B, Nygren R, Paul S, Raman R, Ren Y, Ryan P, Sabbagh S, Scotti F, Skinner C, Soukhanovskii V, Surla V, Taylor C, Timberlake J, Yuh H, Zakharov L. Recent progress of NSTX lithium program and opportunities for magnetic fusion research. Fusion Engineering and Design 2012. [DOI: 10.1016/j.fusengdes.2011.10.011] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
|
44
|
Tachibana M, Amato P, Sparman M, Battaglia D, Patton P, Mitalipov S. Effect of mitochondrial gene replacement in human oocytes on fertilization and embryo development. Fertil Steril 2012. [DOI: 10.1016/j.fertnstert.2012.07.396] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
|
45
|
Stetter O, Battaglia D, Soriano J, Geisel T. Model-free reconstruction of excitatory neuronal connectivity from calcium imaging signals. PLoS Comput Biol 2012; 8:e1002653. [PMID: 22927808 PMCID: PMC3426566 DOI: 10.1371/journal.pcbi.1002653] [Citation(s) in RCA: 139] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2012] [Accepted: 07/01/2012] [Indexed: 12/13/2022] Open
Abstract
A systematic assessment of global neural network connectivity through direct electrophysiological assays has remained technically infeasible, even in simpler systems like dissociated neuronal cultures. We introduce an improved algorithmic approach based on Transfer Entropy to reconstruct structural connectivity from network activity monitored through calcium imaging. We focus in this study on the inference of excitatory synaptic links. Based on information theory, our method requires no prior assumptions on the statistics of neuronal firing and neuronal connections. The performance of our algorithm is benchmarked on surrogate time series of calcium fluorescence generated by the simulated dynamics of a network with known ground-truth topology. We find that the functional network topology revealed by Transfer Entropy depends qualitatively on the time-dependent dynamic state of the network (bursting or non-bursting). Thus by conditioning with respect to the global mean activity, we improve the performance of our method. This allows us to focus the analysis to specific dynamical regimes of the network in which the inferred functional connectivity is shaped by monosynaptic excitatory connections, rather than by collective synchrony. Our method can discriminate between actual causal influences between neurons and spurious non-causal correlations due to light scattering artifacts, which inherently affect the quality of fluorescence imaging. Compared to other reconstruction strategies such as cross-correlation or Granger Causality methods, our method based on improved Transfer Entropy is remarkably more accurate. In particular, it provides a good estimation of the excitatory network clustering coefficient, allowing for discrimination between weakly and strongly clustered topologies. Finally, we demonstrate the applicability of our method to analyses of real recordings of in vitro disinhibited cortical cultures where we suggest that excitatory connections are characterized by an elevated level of clustering compared to a random graph (although not extreme) and can be markedly non-local. Unraveling the general organizing principles of connectivity in neural circuits is a crucial step towards understanding brain function. However, even the simpler task of assessing the global excitatory connectivity of a culture in vitro, where neurons form self-organized networks in absence of external stimuli, remains challenging. Neuronal cultures undergo spontaneous switching between episodes of synchronous bursting and quieter inter-burst periods. We introduce here a novel algorithm which aims at inferring the connectivity of neuronal cultures from calcium fluorescence recordings of their network dynamics. To achieve this goal, we develop a suitable generalization of Transfer Entropy, an information-theoretic measure of causal influences between time series. Unlike previous algorithmic approaches to reconstruction, Transfer Entropy is data-driven and does not rely on specific assumptions about neuronal firing statistics or network topology. We generate simulated calcium signals from networks with controlled ground-truth topology and purely excitatory interactions and show that, by restricting the analysis to inter-bursts periods, Transfer Entropy robustly achieves a good reconstruction performance for disparate network connectivities. Finally, we apply our method to real data and find evidence of non-random features in cultured networks, such as the existence of highly connected hub excitatory neurons and of an elevated (but not extreme) level of clustering.
Collapse
Affiliation(s)
- Olav Stetter
- Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany
- Georg August University, Physics Department, Göttingen, Germany
- Bernstein Center for Computational Neuroscience, Göttingen, Germany
| | - Demian Battaglia
- Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany
- Bernstein Center for Computational Neuroscience, Göttingen, Germany
- * E-mail:
| | - Jordi Soriano
- Departament d'ECM , Facultat de F?sica, Universitat de Barcelona, Barcelona, Spain
| | - Theo Geisel
- Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany
- Georg August University, Physics Department, Göttingen, Germany
- Bernstein Center for Computational Neuroscience, Göttingen, Germany
| |
Collapse
|
46
|
Abstract
Anatomic connections between brain areas affect information flow between neuronal circuits and the synchronization of neuronal activity. However, such structural connectivity does not coincide with effective connectivity (or, more precisely, causal connectivity), related to the elusive question “Which areas cause the present activity of which others?”. Effective connectivity is directed and depends flexibly on contexts and tasks. Here we show that dynamic effective connectivity can emerge from transitions in the collective organization of coherent neural activity. Integrating simulation and semi-analytic approaches, we study mesoscale network motifs of interacting cortical areas, modeled as large random networks of spiking neurons or as simple rate units. Through a causal analysis of time-series of model neural activity, we show that different dynamical states generated by a same structural connectivity motif correspond to distinct effective connectivity motifs. Such effective motifs can display a dominant directionality, due to spontaneous symmetry breaking and effective entrainment between local brain rhythms, although all connections in the considered structural motifs are reciprocal. We show then that transitions between effective connectivity configurations (like, for instance, reversal in the direction of inter-areal interactions) can be triggered reliably by brief perturbation inputs, properly timed with respect to an ongoing local oscillation, without the need for plastic synaptic changes. Finally, we analyze how the information encoded in spiking patterns of a local neuronal population is propagated across a fixed structural connectivity motif, demonstrating that changes in the active effective connectivity regulate both the efficiency and the directionality of information transfer. Previous studies stressed the role played by coherent oscillations in establishing efficient communication between distant areas. Going beyond these early proposals, we advance here that dynamic interactions between brain rhythms provide as well the basis for the self-organized control of this “communication-through-coherence”, making thus possible a fast “on-demand” reconfiguration of global information routing modalities. The circuits of the brain must perform a daunting amount of functions. But how can “brain states” be flexibly controlled, given that anatomic inter-areal connections can be considered as fixed, on timescales relevant for behavior? We hypothesize that, thanks to the nonlinear interaction between brain rhythms, even a simple circuit involving few brain areas can originate a multitude of effective circuits, associated with alternative functions selectable “on demand”. A distinction is usually made between structural connectivity, which describes actual synaptic connections, and effective connectivity, quantifying, beyond correlation, directed inter-areal causal influences. In our study, we measure effective connectivity based on time-series of neural activity generated by model inter-areal circuits. We find that “causality follows dynamics”. We show indeed that different effective networks correspond to different dynamical states associated to a same structural network (in particular, different phase-locking patterns between local neuronal oscillations). We then find that “information follows causality” (and thus, again, dynamics). We demonstrate that different effective networks give rise to alternative modalities of information routing between brain areas wired together in a fixed structural network. In particular, we show that the self-organization of interacting “analog” rate oscillations control the flow of “digital-like” information encoded in complex spiking patterns.
Collapse
Affiliation(s)
- Demian Battaglia
- Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany.
| | | | | | | |
Collapse
|
47
|
Khoury C, Coffler M, Potter D, Frederick J, Battaglia D. Improved Blastocyst Development Using A Single Step Medium Versus A Sequential Medium. Fertil Steril 2012. [DOI: 10.1016/j.fertnstert.2012.01.008] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
|
48
|
|
49
|
Kirst C, Timme M, Battaglia D. Local control of non-local information flow in oscillatory neuronal networks. BMC Neurosci 2011. [PMCID: PMC3240175 DOI: 10.1186/1471-2202-12-s1-o15] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
|
50
|
Battaglia D, Hansel D. Synchronous chaos and broad band gamma rhythm in a minimal multi-layer model of primary visual cortex. PLoS Comput Biol 2011; 7:e1002176. [PMID: 21998568 PMCID: PMC3188510 DOI: 10.1371/journal.pcbi.1002176] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2010] [Accepted: 07/15/2011] [Indexed: 12/02/2022] Open
Abstract
Visually induced neuronal activity in V1 displays a marked gamma-band component which is modulated by stimulus properties. It has been argued that synchronized oscillations contribute to these gamma-band activity. However, analysis of Local Field Potentials (LFPs) across different experiments reveals considerable diversity in the degree of oscillatory behavior of this induced activity. Contrast-dependent power enhancements can indeed occur over a broad band in the gamma frequency range and spectral peaks may not arise at all. Furthermore, even when oscillations are observed, they undergo temporal decorrelation over very few cycles. This is not easily accounted for in previous network modeling of gamma oscillations. We argue here that interactions between cortical layers can be responsible for this fast decorrelation. We study a model of a V1 hypercolumn, embedding a simplified description of the multi-layered structure of the cortex. When the stimulus contrast is low, the induced activity is only weakly synchronous and the network resonates transiently without developing collective oscillations. When the contrast is high, on the other hand, the induced activity undergoes synchronous oscillations with an irregular spatiotemporal structure expressing a synchronous chaotic state. As a consequence the population activity undergoes fast temporal decorrelation, with concomitant rapid damping of the oscillations in LFPs autocorrelograms and peak broadening in LFPs power spectra. We show that the strength of the inter-layer coupling crucially affects this spatiotemporal structure. We predict that layer VI inactivation should induce global changes in the spectral properties of induced LFPs, reflecting their slower temporal decorrelation in the absence of inter-layer feedback. Finally, we argue that the mechanism underlying the emergence of synchronous chaos in our model is in fact very general. It stems from the fact that gamma oscillations induced by local delayed inhibition tend to develop chaos when coupled by sufficiently strong excitation. Visual stimulation elicits neuronal responses in visual cortex. When the contrast of the used stimuli increases, the power of this induced activity is boosted over a broad frequency range (30–100 Hz), called the “gamma band.” It would be tempting to hypothesize that this phenomenon is due to the emergence of oscillations in which many neurons fire collectively in a rhythmic way. However, previous models trying to explain contrast-related power enhancements using synchronous oscillations failed to reproduce the observed spectra because they originated unrealistically sharp spectral peaks. The aim of our study is to reconcile synchronous oscillations with broad-band power spectra. We argue here that, thanks to the interaction between neuronal populations at different depths in the cortical tissue, the induced oscillatory responses are synchronous, but, at the same time, chaotic. The chaotic nature of the dynamics makes it possible to have broad-band power spectra together with synchrony. Our modeling study allows us formulating qualitative experimental predictions that provide a potential test for our theory. We predict that if the interactions between cortical layers are suppressed, for instance by inactivating neurons in deep layers, the induced responses might become more regular and narrow isolated peaks might develop in their power spectra.
Collapse
Affiliation(s)
- Demian Battaglia
- Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany.
| | | |
Collapse
|