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Rogers EE, Stone AL, Burchard E, Sherman DJ, Dardick C. Almond can be infected by Plum Pox Virus-D isolate Penn4 and is a transmission-competent host. Plant Dis 2024. [PMID: 38372721 DOI: 10.1094/pdis-09-23-1910-sc] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/20/2024]
Abstract
While currently eradicated from the U.S., Plum pox virus (PPV) poses an ongoing threat to U.S. stone fruit production. Although almond (Prunus dulcis) is known to be largely resistant to PPV, there is conflicting evidence about its potential to serve as an asymptomatic reservoir host for the virus and thus serve as a potential route of entry. Here, we demonstrate that both Tuono and Texas Mission cultivars can be infected by the U.S. isolate PPV-D Penn4 and that Tuono is a transmission-competent host, capable of serving as a source of inoculum for aphid transmission of the virus. These findings have important implications for efforts to keep PPV out of the U.S. and highlights the need for additional research to test the susceptibility of almond to other PPV-D isolates.
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Affiliation(s)
- Elizabeth E Rogers
- US Department of Agriculture Research Education and Economics, 17139, Agricultural Research Service, Foreign Disease Weed Science Research Unit, Frederick, Maryland, United States;
| | - Andrew L Stone
- Foreign Disease-Weed Science Research Unit, ARS, Fort Detrick, Maryland, United States;
| | - Erik Burchard
- US Department of Agriculture Research Education and Economics, 17139, Agricultural Research Service, Appalachian Fruit Research Station, Kearneysville, West Virginia, United States;
| | - Diana J Sherman
- Foreign Disease-Weed Science Research Unit, ARS, Fort Detrick, Maryland, United States;
| | - Chris Dardick
- US Department of Agriculture Research Education and Economics, 17139, Agricultural Research Service, Appalachian Fruit Research Station, Kearneysville, West Virginia, United States;
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Waite JM, Hollender CA, Eilers JR, Burchard E, Dardick C. Peach LAZY1 and DRO1 protein-protein interactions and co-expression with PRAF/RLD family support conserved gravity-related protein interactions across plants. MicroPubl Biol 2024; 2024:10.17912/micropub.biology.000995. [PMID: 38287925 PMCID: PMC10823791 DOI: 10.17912/micropub.biology.000995] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Figures] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Revised: 12/12/2023] [Accepted: 01/09/2024] [Indexed: 01/31/2024]
Abstract
IGT/LAZY proteins play a central role in determining gravitropic set point angle and orientation of lateral organs across plant species. Recent work in model systems has demonstrated that interactions between IGT/LAZY proteins and BREVIS RADIX (BRX)-domain containing proteins, such as PH, RCC1, AND FYVE/RCC1-LIKE DOMAIN (PRAF/RLD), and BREVIS RADIX LIKE (BRXL) family members, are mechanistically important for setting gravitropic set point angle. Here, we identified peach PRAF/RLD proteins as interactors of the peach IGT/LAZY proteins PpeLAZY1 and DEEPER ROOTING 1 (PpeDRO1) from a yeast-two-hybrid screen. We also show that the BRX domains of these interacting proteins have high sequence similarity with PRAF/RLD and BRX family proteins from rice and Arabidopsis. Further, PpeLAZY1 and the peach PRAF/RLD interactors are all expressed at relatively high levels in leaf, meristem, and shoot tip tissues. Together, this evidence supports the importance and conservation of IGT/LAZY-BRX-domain interactions, which underlie setting gravitropic set point angle across angiosperms.
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Affiliation(s)
| | | | - Jon R. Eilers
- USDA ARS Tree Fruit Research Laboratory, Wenatchee, WA
| | - Erik Burchard
- USDA ARS Appalachian Fruit Research Station, Kearneysville, WV
| | - Chris Dardick
- USDA ARS Appalachian Fruit Research Station, Kearneysville, WV
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Mansfeld BN, Yocca A, Ou S, Harkess A, Burchard E, Gutierrez B, van Nocker S, Gottschalk C. A haplotype resolved chromosome-scale assembly of North American wild apple Malus fusca and comparative genomics of the fire blight Mfu10 locus. Plant J 2023; 116:989-1002. [PMID: 37639371 DOI: 10.1111/tpj.16433] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2023] [Revised: 07/08/2023] [Accepted: 08/12/2023] [Indexed: 08/31/2023]
Abstract
SUMMARYThe Pacific crabapple (Malus fusca) is a wild relative of the commercial apple (Malus × domestica). With a range extending from Alaska to Northern California, M. fusca is extremely hardy and disease resistant. The species represents an untapped genetic resource for the development of new apple cultivars with enhanced stress resistance. However, gene discovery and utilization of M. fusca have been hampered by the lack of genomic resources. Here, we present a high‐quality, haplotype‐resolved, chromosome‐scale genome assembly and annotation for M. fusca. The genome was assembled using high‐fidelity long‐reads and scaffolded using genetic maps and high‐throughput chromatin conformation capture sequencing, resulting in one of the most contiguous apple genomes to date. We annotated the genome using public transcriptomic data from the same species taken from diverse plant structures and developmental stages. Using this assembly, we explored haplotypic structural variation within the genome of M. fusca, identifying thousands of large variants. We further showed high sequence co‐linearity with other domesticated and wild Malus species. Finally, we resolve a known quantitative trait locus associated with resistance to fire blight (Erwinia amylovora). Insights gained from the assembly of a reference‐quality genome of this hardy wild apple relative will be invaluable as a tool to facilitate DNA‐informed introgression breeding.
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Affiliation(s)
- Ben N Mansfeld
- Department of Biology, Washington University in St. Louis, St. Louis, Missouri, USA
| | - Alan Yocca
- HudsonAlpha Institute for Biotechnology, Huntsville, Alabama, USA
| | - Shujun Ou
- Department of Molecular Genetics, The Ohio State University, Columbus, Ohio, USA
| | - Alex Harkess
- HudsonAlpha Institute for Biotechnology, Huntsville, Alabama, USA
| | - Erik Burchard
- USDA ARS, Appalachian Fruit Research Station, Kearneysville, West Virginia, USA
| | | | - Steve van Nocker
- Department of Horticulture, Michigan State University, East Lansing, Michigan, USA
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Witonsky J, Elhawary J, Huang P, Holweg C, Millette L, Ko J, Raut P, Borrell L, Burchard E. P074 OMALIZUMAB IS EFFICACIOUS IN CHILDREN WITH ALLERGIC ASTHMA FROM DIFFERENT RACIAL BACKGROUNDS. Ann Allergy Asthma Immunol 2021. [DOI: 10.1016/j.anai.2021.08.103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Abdelfattah A, Freilich S, Bartuv R, Zhimo VY, Kumar A, Biasi A, Salim S, Feygenberg O, Burchard E, Dardick C, Liu J, Khan A, Ellouze W, Ali S, Spadaro D, Torres R, Teixido N, Ozkaya O, Buehlmann A, Vero S, Mondino P, Berg G, Wisniewski M, Droby S. Global analysis of the apple fruit microbiome: are all apples the same? Environ Microbiol 2021; 23:6038-6055. [PMID: 33734550 PMCID: PMC8596679 DOI: 10.1111/1462-2920.15469] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2021] [Revised: 02/25/2021] [Accepted: 03/16/2021] [Indexed: 01/04/2023]
Abstract
We present the first worldwide study on the apple (Malus × domestica) fruit microbiome that examines questions regarding the composition and the assembly of microbial communities on and in apple fruit. Results revealed that the composition and structure of the fungal and bacterial communities associated with apple fruit vary and are highly dependent on geographical location. The study also confirmed that the spatial variation in the fungal and bacterial composition of different fruit tissues exists at a global level. Fungal diversity varied significantly in fruit harvested in different geographical locations and suggests a potential link between location and the type and rate of postharvest diseases that develop in each country. The global core microbiome of apple fruit was represented by several beneficial microbial taxa and accounted for a large fraction of the fruit microbial community. The study provides foundational information about the apple fruit microbiome that can be utilized for the development of novel approaches for the management of fruit quality and safety, as well as for reducing losses due to the establishment and proliferation of postharvest pathogens. It also lays the groundwork for studying the complex microbial interactions that occur on apple fruit surfaces.
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Affiliation(s)
- Ahmed Abdelfattah
- Institute of Environmental Biotechnology, Graz University of Technology, Petersgasse 12, Graz, 8010, Austria.,Department of Ecology, Environment and Plant Sciences, Stockholm University, Stockholm, Sweden
| | - Shiri Freilich
- Department of Natural Resources, Institute of Plant Sciences, Agricultural Research Organization, Newe Yaar Research Center, P.O. Box 1021, Ramat Yishay, 30095, Israel
| | - Rotem Bartuv
- Department of Natural Resources, Institute of Plant Sciences, Agricultural Research Organization, Newe Yaar Research Center, P.O. Box 1021, Ramat Yishay, 30095, Israel.,Department of Postharvest Science, Agricultural Research Organization, The Volcani Institute, P.O. Box 15159, Rishon LeZion, 7505101, Israel.,The Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Faculty of Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
| | - V Yeka Zhimo
- Department of Postharvest Science, Agricultural Research Organization, The Volcani Institute, P.O. Box 15159, Rishon LeZion, 7505101, Israel
| | - Ajay Kumar
- Department of Postharvest Science, Agricultural Research Organization, The Volcani Institute, P.O. Box 15159, Rishon LeZion, 7505101, Israel
| | - Antonio Biasi
- Department of Postharvest Science, Agricultural Research Organization, The Volcani Institute, P.O. Box 15159, Rishon LeZion, 7505101, Israel
| | - Shoshana Salim
- Department of Postharvest Science, Agricultural Research Organization, The Volcani Institute, P.O. Box 15159, Rishon LeZion, 7505101, Israel
| | - Oleg Feygenberg
- Department of Postharvest Science, Agricultural Research Organization, The Volcani Institute, P.O. Box 15159, Rishon LeZion, 7505101, Israel
| | - Erik Burchard
- United States Department of Agriculture, Agricultural Research Service (USDA-ARS). Appalachian Fruit Research Station, Kearneysville, West Virginia, 25430, USA
| | - Christopher Dardick
- United States Department of Agriculture, Agricultural Research Service (USDA-ARS). Appalachian Fruit Research Station, Kearneysville, West Virginia, 25430, USA
| | - Jia Liu
- Chongqing Key Laboratory of Economic Plant Biotechnology, College of Landscape Architecture and Life Sciences, Chongqing University of Arts and Sciences, Yongchuan, Chongquing, 402160, China
| | - Awais Khan
- Cornell University, 5 Castle Creek Drive, 112 Barton Lab, Geneva, New York, 14456, USA
| | - Walid Ellouze
- Agriculture and Agri-Food Canada, Research Farm, Vineland, Ontario, Canada
| | - Shawkat Ali
- Agriculture and Agri-Food Canada, 32 Main Street, Kentville, Nova Scotia, B4N 1J5, Canada
| | - Davide Spadaro
- Department of Agricultural, Forestry and Food Sciences (DISAFA), AGROINNOVA-Centre of Competence, University of Torino, Largo Braccini 2, Grugliasco (TO), 10095, Italy
| | - Rosario Torres
- IRTA, Parc Científic i Tecnològic de Gardeny, Fruitcentre building, Lleida, Catalonia, 25003, Spain
| | - Neus Teixido
- IRTA, Parc Científic i Tecnològic de Gardeny, Fruitcentre building, Lleida, Catalonia, 25003, Spain
| | - Okan Ozkaya
- Department of Horticulture, Faculty of Agriculture 1330, Cukurova University, Adana, Turkey
| | - Andreas Buehlmann
- Agroscope, Competence Division Plants and Plant Products, Müller-Thurgaustr 29, Wädenswil, CH-8820, Switzerland
| | - Silvana Vero
- Facultad de Química-UdeLaR Cátedra de Microbiología, Montevideo, Uruguay
| | - Pedro Mondino
- Department of Plant Protection, Faculty of Agronomy, University of the Republic, Garzón 780, Montevideo, 12900, Uruguay
| | - Gabriele Berg
- Institute of Environmental Biotechnology, Graz University of Technology, Petersgasse 12, Graz, 8010, Austria
| | - Michael Wisniewski
- Department of Biological Sciences, Virginia Polytechnic Institute and State University, 220 Ag Quad Ln, Blacksburg, Virginia, 24061, USA
| | - Samir Droby
- Department of Postharvest Science, Agricultural Research Organization, The Volcani Institute, P.O. Box 15159, Rishon LeZion, 7505101, Israel
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Abdelfattah A, Whitehead SR, Macarisin D, Liu J, Burchard E, Freilich S, Dardick C, Droby S, Wisniewski M. Effect of Washing, Waxing and Low-Temperature Storage on the Postharvest Microbiome of Apple. Microorganisms 2020; 8:E944. [PMID: 32585961 PMCID: PMC7356622 DOI: 10.3390/microorganisms8060944] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2020] [Revised: 06/18/2020] [Accepted: 06/19/2020] [Indexed: 12/19/2022] Open
Abstract
There is growing recognition of the role that the microbiome plays in the health and physiology of many plant species. However, considerably less research has been conducted on the postharvest microbiome of produce and the impact that postharvest processing may have on its composition. Here, amplicon sequencing was used to study the effect of washing, waxing, and low-temperature storage at 2 °C for six months on the bacterial and fungal communities of apple calyx-end, stem-end, and peel tissues. The results of the present work reveal that tissue-type is the main factor defining fungal and bacterial diversity and community composition on apple fruit. Both postharvest treatments and low temperature storage had a strong impact on the fungal and bacterial diversity and community composition of these tissue types. Distinct spatial and temporal changes in the composition and diversity of the microbiota were observed in response to various postharvest management practices. The greatest impact was attributed to sanitation practices with major differences among unwashed, washed and washed-waxed apples. The magnitude of the differences, however, was tissue-specific, with the greatest impact occurring on peel tissues. Temporally, the largest shift occurred during the first two months of low-temperature storage, although fungi were more affected by storage time than bacteria. In general, fungi and bacteria were impacted equally by sanitation practices, especially the epiphytic microflora of peel tissues. This research provides a foundation for understanding the impact of postharvest management practices on the microbiome of apple and its potential subsequent effects on postharvest disease management and food safety.
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Affiliation(s)
- Ahmed Abdelfattah
- Institute of Environmental Biotechnology, Graz University of Technology, Petersgasse 12, 8010 Graz, Austria
- Department of Ecology, Environment and Plant Sciences, University of Stockholm, Svante Arrhenius väg 20A, 11418 Stockholm, Sweden
| | - Susan R. Whitehead
- Department of Biological Sciences, Virginia Polytechnic Institute and State University, 220 Ag Quad Ln, Blacksburg, VA 24061, USA
| | - Dumitru Macarisin
- U.S. Food and Drug Administration, 501 Campus Drive, College Park, MD 20740, USA;
| | - Jia Liu
- Chongqing Key Laboratory of Economic Plant Biotechnology, College of Landscape Architecture and Life Sciences, Chongqing University of Arts and Sciences, Yongchuan, Chongqing 402160, China;
| | - Erik Burchard
- U.S. Department of Agriculture—Agricultural Research Service, 2217 Wiltshire Road, Kearneysville, WV 25430, USA; (E.B.); (C.D.)
| | - Shiri Freilich
- Institute of Plant Sciences, Newe Ya’ar Research Center, The Agricultural Research Organization, Ramat Yishay 30095, Israel;
| | - Christopher Dardick
- U.S. Department of Agriculture—Agricultural Research Service, 2217 Wiltshire Road, Kearneysville, WV 25430, USA; (E.B.); (C.D.)
| | - Samir Droby
- Department of Postharvest Science, Agricultural Research Organization, The Volcani Center, Rishon LeZion 7505101, Israel;
| | - Michael Wisniewski
- Department of Biological Sciences, Virginia Polytechnic Institute and State University, 220 Ag Quad Ln, Blacksburg, VA 24061, USA
- U.S. Department of Agriculture—Agricultural Research Service, 2217 Wiltshire Road, Kearneysville, WV 25430, USA; (E.B.); (C.D.)
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Liu J, Abdelfattah A, Norelli J, Burchard E, Schena L, Droby S, Wisniewski M. Apple endophytic microbiota of different rootstock/scion combinations suggests a genotype-specific influence. Microbiome 2018; 6:18. [PMID: 29374490 PMCID: PMC5787276 DOI: 10.1186/s40168-018-0403-x] [Citation(s) in RCA: 81] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/01/2017] [Accepted: 01/18/2018] [Indexed: 05/19/2023]
Abstract
BACKGROUND High-throughput amplicon sequencing spanning conserved portions of microbial genomes (16s rRNA and ITS) was used in the present study to describe the endophytic microbiota associated with three apple varieties, "Royal Gala," "Golden Delicious," and "Honey Crisp," and two rootstocks, M.9 and M.M.111. The objectives were to (1) determine if the microbiota differs in different rootstocks and apple varieties and (2) determine if specific rootstock-scion combinations influence the microbiota composition of either component. RESULTS Results indicated that Ascomycota (47.8%), Zygomycota (31.1%), and Basidiomycota (11.6%) were the dominant fungal phyla across all samples. The majority of bacterial sequences were assigned to Proteobacteria (58.4%), Firmicutes (23.8%), Actinobacteria (7.7%), Bacteroidetes (2%), and Fusobacteria (0.4%). Rootstocks appeared to influence the microbiota of associated grafted scion, but the effect was not statistically significant. Pedigree also had an impact on the composition of the endophytic microbiota, where closely-related cultivars had a microbial community that was more similar to each other than it was to a scion cultivar that was more distantly-related by pedigree. The more vigorous rootstock (M.M.111) was observed to possess a greater number of growth-promoting bacterial taxa, relative to the dwarfing rootstock (M.9). CONCLUSIONS The mechanism by which an apple genotype, either rootstock or scion, has a determinant effect on the composition of a microbial community is not known. The similarity of the microbiota in samples with a similar pedigree suggests the possibility of some level of co-evolution or selection as proposed by the "holobiont" concept in which metaorganisms have co-evolved. Clearly, however, the present information is only suggestive, and a more comprehensive analysis is needed.
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Affiliation(s)
- Jia Liu
- Chongqing Key Laboratory of Economic Plant Biotechnology, Collaborative Innovation Center of Special Plant Industry in Chongqing, Institute of Special Plants/College of Forestry and Life Science, Chongqing University of Arts and Sciences, Yongchuan, Chongqing, 402160 China
| | - Ahmed Abdelfattah
- Dipartimento di Agraria, Università Mediterranea di Reggio Calabria, Località Feo di Vito, 89122 Reggio Calabria, Italy
| | - John Norelli
- US Department of Agriculture, Agricultural Research Service (USDA-ARS), Kearneysville, WV 25430 USA
| | - Erik Burchard
- US Department of Agriculture, Agricultural Research Service (USDA-ARS), Kearneysville, WV 25430 USA
| | - Leonardo Schena
- Dipartimento di Agraria, Università Mediterranea di Reggio Calabria, Località Feo di Vito, 89122 Reggio Calabria, Italy
| | - Samir Droby
- Agricultural Research Organization (ARO), the Volcani Center, 50250 Bet Dagan, Israel
| | - Michael Wisniewski
- US Department of Agriculture, Agricultural Research Service (USDA-ARS), Kearneysville, WV 25430 USA
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Norelli JL, Wisniewski M, Fazio G, Burchard E, Gutierrez B, Levin E, Droby S. Genotyping-by-sequencing markers facilitate the identification of quantitative trait loci controlling resistance to Penicillium expansum in Malus sieversii. PLoS One 2017; 12:e0172949. [PMID: 28257442 PMCID: PMC5336245 DOI: 10.1371/journal.pone.0172949] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2016] [Accepted: 02/13/2017] [Indexed: 11/30/2022] Open
Abstract
Blue mold caused by Penicillium expansum is the most important postharvest disease of apple worldwide and results in significant financial losses. There are no defined sources of resistance to blue mold in domesticated apple. However, resistance has been described in wild Malus sieversii accessions, including plant introduction (PI)613981. The objective of the present study was to identify the genetic loci controlling resistance to blue mold in this accession. We describe the first quantitative trait loci (QTL) reported in the Rosaceae tribe Maleae conditioning resistance to P. expansum on genetic linkage group 3 (qM-Pe3.1) and linkage group 10 (qM-Pe10.1). These loci were identified in a M.× domestica 'Royal Gala' X M. sieversii PI613981 family (GMAL4593) based on blue mold lesion diameter seven days post-inoculation in mature, wounded apple fruit inoculated with P. expansum. Phenotypic analyses were conducted in 169 progeny over a four year period. PI613981 was the source of the resistance allele for qM-Pe3.1, a QTL with a major effect on blue mold resistance, accounting for 27.5% of the experimental variability. The QTL mapped from 67.3 to 74 cM on linkage group 3 of the GMAL4593 genetic linkage map. qM-Pe10.1 mapped from 73.6 to 81.8 cM on linkage group 10. It had less of an effect on resistance, accounting for 14% of the experimental variation. 'Royal Gala' was the primary contributor to the resistance effect of this QTL. However, resistance-associated alleles in both parents appeared to contribute to the least square mean blue mold lesion diameter in an additive manner at qM-Pe10.1. A GMAL4593 genetic linkage map composed of simple sequence repeats and 'Golden Delicious' single nucleotide polymorphism markers was able to detect qM-Pe10.1, but failed to detect qM-Pe3.1. The subsequent addition of genotyping-by-sequencing markers to the linkage map provided better coverage of the PI613981 genome on linkage group 3 and facilitated discovery of qM-Pe3.1. A DNA test for qM-Pe3.1 has been developed and is currently being evaluated for its ability to predict blue mold resistance in progeny segregating for qM-Pe3.1. Due to the long juvenility of apple, the availability of a DNA test to screen for the presence of qM-Pe3.1 at the seedling stage will greatly improve efficiency of breeding apple for blue mold resistance.
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Affiliation(s)
- John L. Norelli
- Appalachian Fruit Research Station, Agricultural Research Service, United States Department of Agriculture, Kearneysville, West Virginia, United States of America
| | - Michael Wisniewski
- Appalachian Fruit Research Station, Agricultural Research Service, United States Department of Agriculture, Kearneysville, West Virginia, United States of America
| | - Gennaro Fazio
- Plant Genetic Resources Research, Agricultural Research Service, United States Department of Agriculture, Geneva, New York, United States of America
| | - Erik Burchard
- Appalachian Fruit Research Station, Agricultural Research Service, United States Department of Agriculture, Kearneysville, West Virginia, United States of America
| | - Benjamin Gutierrez
- Plant Genetic Resources Research, Agricultural Research Service, United States Department of Agriculture, Geneva, New York, United States of America
| | - Elena Levin
- Department of Postharvest Science, Agricultural Research Organization, the Volcani Center, Bet Dagan, Israel
| | - Samir Droby
- Department of Postharvest Science, Agricultural Research Organization, the Volcani Center, Bet Dagan, Israel
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Ballester AR, Norelli J, Burchard E, Abdelfattah A, Levin E, González-Candelas L, Droby S, Wisniewski M. Transcriptomic Response of Resistant (PI613981- Malus sieversii) and Susceptible ("Royal Gala") Genotypes of Apple to Blue Mold ( Penicillium expansum) Infection. Front Plant Sci 2017; 8:1981. [PMID: 29201037 PMCID: PMC5696741 DOI: 10.3389/fpls.2017.01981] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2017] [Accepted: 11/02/2017] [Indexed: 05/18/2023]
Abstract
Malus sieversii from Central Asia is a progenitor of the modern domesticated apple (Malus × domestica). Several accessions of M. sieversii are highly resistant to the postharvest pathogen Penicillium expansum. A previous study identified the qM-Pe3.1 QTL on LG3 for resistance to P. expansum in the mapping population GMAL4593, developed using the resistant accession, M. sieversii -PI613981, and the susceptible cultivar "Royal Gala" (RG) (M. domestica), as parents. The goal of the present study was to characterize the transcriptomic response of susceptible RG and resistant PI613981 apple fruit to wounding and inoculation with P. expansum using RNA-Seq. Transcriptomic analyses 0-48 h post inoculation suggest a higher basal level of resistance and a more rapid and intense defense response to wounding and wounding plus inoculation with P. expansum in M. sieversii -PI613981 than in RG. Functional analysis showed that ethylene-related genes and genes involved in "jasmonate" and "MYB-domain transcription factor family" were over-represented in the resistant genotype. It is suggested that the more rapid response in the resistant genotype (Malus sieversii-PI613981) plays a major role in the resistance response. At least twenty DEGs were mapped to the qM-Pe3.1 QTL (M × d v.1: 26,848,396-28,424,055) on LG3, and represent potential candidate genes responsible for the observed resistance QTL in M. sieversii-PI613981. RT-qPCR of several of these genes was used to validate the RNA-Seq data and to confirm their higher expression in MS0.
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Affiliation(s)
- Ana-Rosa Ballester
- Instituto de Agroquímica y Tecnología de Alimentos (CSIC), Valencia, Spain
- *Correspondence: Ana-Rosa Ballester
| | - John Norelli
- United States Department of Agriculture–Agricultural Research Service, Kearneysville, WV, United States
| | - Erik Burchard
- United States Department of Agriculture–Agricultural Research Service, Kearneysville, WV, United States
| | - Ahmed Abdelfattah
- Dipartimento di Agraria, Università Mediterranea di Reggio Calabria, Reggio Calabria, Italy
| | - Elena Levin
- Agricultural Research Organization, Volcani Center, Bet Dagan, Israel
| | | | - Samir Droby
- Agricultural Research Organization, Volcani Center, Bet Dagan, Israel
| | - Michael Wisniewski
- United States Department of Agriculture–Agricultural Research Service, Kearneysville, WV, United States
- Michael Wisniewski
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Warenczak-Florczak Z, Bratos K, Wlodarczyk H, Burchard E, Urbanski B, Roszak A. EP-1100: Searching for prognostic factors of radiochemotherapy effects in advance cervical cancer patients. Radiother Oncol 2013. [DOI: 10.1016/s0167-8140(15)33406-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Abstract
BACKGROUND Moderate to severe pain after hallux valgus repair can be successfully treated with a continuous popliteal sciatic nerve block in ambulatory patients. Different anesthesiologists use various infusion rates for this purpose. The aim of this study was to compare the analgesic efficacy of two infusion rates of ropivacaine 2 mg/ml: 5 and 8 ml/h. METHODS Forty ambulatory patients who underwent chevron osteotomy for hallux valgus were randomized to receive perisciatic infusion of ropivacaine 2 mg/ml at a rate of either 5 ml/h (5 ml group) or 8 ml/h (8 ml group). All patients received standard general anesthesia for surgery after the sciatic popliteal and the single-shot saphenus nerve blocks were performed. Verbal rating scale (VRS) scores for pain, sleep disturbances, opioid consumption and side effects were monitored for 3 post-operative days. RESULTS No significant difference was found in the primary end point worst pain on the first post-operative day with VRS scores of 2.5 (0-8) vs. 5.5 (0-10) for the 5 and 8 ml/h groups, respectively (P=0.53). Post-operative pain was satisfactory in both groups, with an average VRS score ≤4 for 60-62 h. CONCLUSION We found no significant difference in the analgesic effect between two perisciatic infusion rates of ropivacaine 2 mg/ml (5 vs. 8 ml/h) in ambulatory patients who underwent chevron osteotomy.
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Affiliation(s)
- D Zaric
- Department of Anesthesiology, Frederiksberg Hospital, University of Copenhagen, Denmark.
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Wu CJ, Kurbegov D, Lattin B, Burchard E, Finkle C, Valantine H, Billingham ME, Starnes VA, Clayberger C. Cytokine gene expression in human cardiac allograft recipients. Transpl Immunol 1994; 2:199-207. [PMID: 8000848 DOI: 10.1016/0966-3274(94)90061-2] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
The long-term success of heart transplantation for end-stage heart disease has been hindered by the problems associated with acute and chronic graft rejection, opportunistic infections and potentially fatal complications of intensive immunosuppression. A more complete understanding of the biology of transplant rejection should provide the basis for the development of improved methods for controlling and monitoring rejection. Cytokines, the soluble factors which regulate the immune response, are central to the rejection process. The objective of this study was to analyse cytokine mRNA transcripts in 99 biopsy samples and 89 blood samples from 65 and 35 Stanford Medical Center cardiac transplant recipients, respectively, gathered between January 1990 and January 1992. Following RNA extraction and conversion to cDNA, samples were amplified with cytokine-specific primers for interleukins (IL) 1 to 8, TNF-beta (tumour necrosis factor-beta) and IFN-gamma (interferon-gamma) and were analysed by gel electrophoresis and Southern blot hybridization. Our results demonstrate that despite chronic immunosuppressive therapy, the peripheral blood of transplant recipients expressed a higher combined percentage of different cytokine transcripts than did peripheral blood obtained from normal volunteers. In transplant patients, detection of cytokine transcripts for IL-1 alpha, IL-1 beta and IL-2 increased with time after transplantation. Intragraft IL-7 gene expression was significantly increased in biopsies diagnosed with mild (grade 1) rejection when compared to those with no evidence of rejection or with moderate to severe rejection. Implications of these results in light of possible mechanisms of rejection and of new approaches to immunotherapy are discussed.
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Affiliation(s)
- C J Wu
- Department of Cardiothoracic Surgery, Stanford University, California
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Stiebler HJ, Kohler H, Burchard E, Strauss C. [Gas gangrene in uterine infections and its treatment]. Zentralbl Gynakol 1968; 90:824-7. [PMID: 4300758] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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Burchard E. Praktische Erfahrungen mit Candiolin. Dtsch Med Wochenschr 1916. [DOI: 10.1055/s-0028-1135227] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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15
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Burchard E. Einige spezifische Indikationen des Aleudrins. Dtsch Med Wochenschr 1913. [DOI: 10.1055/s-0028-1128452] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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