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Chaparro-Encinas LA, Parra-Cota FI, Cruz-Mendívil A, Santoyo G, Peña-Cabriales JJ, Castro-Espinoza L, de Los Santos-Villalobos S. Transcriptional regulation of cell growth and reprogramming of systemic response in wheat (Triticum turgidum subsp. durum) seedlings by Bacillus paralicheniformis TRQ65. Planta 2022; 255:56. [PMID: 35106645 DOI: 10.1007/s00425-022-03837-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2021] [Accepted: 01/23/2022] [Indexed: 06/14/2023]
Abstract
Bacillus paralicheniformis TRQ65 reprograms the gene expression patterns associated with systemic response to potentially facilitate its colonization and stimulate cell growth and plant biomass. Plant growth-promoting rhizobacteria (PGPR) carry out numerous mechanisms that enhance growth in seedlings, such as nutrient solubilization, phytohormone production, biocontrol activity, and regulation of induced systemic resistance (ISR) and acquired systemic resistance (ASR). Bacillus paralicheniformis TRQ65 is a biological and plant growth-promoting bacterium isolated from wheat (Triticum turgidum subsp. durum) rhizosphere. In this study, we performed a transcriptomic analysis of wheat seedlings inoculated with the native rhizobacterium Bacillus paralicheniformis TRQ65 (1 × 107 cells∙g -1 of soil) at early development stages (GS15). A morphometrical assay was carried out to confirm growth promotion and after the cultivation period, TRQ65 was re-isolated to define inoculum persistence. Inoculated seedlings showed a significant (P < 0.05) increase in shoot length (93.48%) and dry weight in both shoot (117.02%) and root (48.33%) tissues; also, the strain persisted in the soil at 1.4 × 107 UFC∙g-1 of soil. A total of 228 differentially expressed genes (DEGs) (FDR < 0.05 and |log2 fold change|≥ 1.3) were observed in response to TRQ65 inoculation, of which 185 were down-regulated and 43 were up-regulated. The transcriptional patterns were characterized by the regulation of multidimensional cell growth (ROS, Ca+2 channel, and NADPH oxidases activity), suppression of defense mechanism (PR proteins, PDFs, ROS, transcription factors), induction of central stimuli receptors (RALF, WAK, MAPK), carbohydrate metabolism (invertase activity) and phytohormone-related transport (ABCG transporter and AAAP). These results suggest that B. paralicheniformis TRQ65 is a promising bioinoculant agent for increasing wheat growth and development by reprogramming ISR and ASR simultaneously, suppressing defense mechanisms and inducing central stimuli response.
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Affiliation(s)
- Luis A Chaparro-Encinas
- Instituto Tecnológico de Sonora, 5 de febrero 818 Sur, C.P. 85000, Col. Centro, Ciudad Obregón, Sonora, México
- Universidad Autónoma Agraria Antonio Narro (UAAAN) Unidad Laguna, Periférico Raúl López Sánchez, Valle Verde, 27054, Torreón, Coahuila, México
| | - Fannie I Parra-Cota
- Campo Experimental Norman E. Borlaug-CIRNO. Instituto Nacional de Investigaciones Forestales, Agrícolas y Pecuarias (INIFAP), Norman E. Borlaug Km. 12, CP 85000, Valle del Yaqui, Ciudad Obregón, Sonora, México
| | - Abraham Cruz-Mendívil
- Cátedras CONACYT, Instituto Politécnico Nacional, Centro Interdisciplinario de Investigación Para el Desarrollo Integral Regional (CIIDIR) Unidad Sinaloa, Guasave, Sinaloa, México
| | - Gustavo Santoyo
- Instituto de Investigaciones Químico Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Morelia, Michoacán, México
| | - Juan J Peña-Cabriales
- Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional Campus Guanajuato, Irapuato Guanajuato, México
| | - Luciano Castro-Espinoza
- Instituto Tecnológico de Sonora, 5 de febrero 818 Sur, C.P. 85000, Col. Centro, Ciudad Obregón, Sonora, México
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Desgarennes D, Garrido E, Torres-Gomez MJ, Peña-Cabriales JJ, Partida-Martinez LP. Diazotrophic potential among bacterial communities associated with wild and cultivated Agave species. FEMS Microbiol Ecol 2014; 90:844-57. [PMID: 25314594 DOI: 10.1111/1574-6941.12438] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2014] [Revised: 10/07/2014] [Accepted: 10/08/2014] [Indexed: 01/04/2023] Open
Abstract
Agaves are major biotic resources in arid and semi-arid ecosystems. Despite their ecological, economical and cultural relevance, many aspects of the microbial communities associated with agaves are still unknown. Here, we investigated the bacterial communities associated with two Agave species by 16S rRNA- Denaturing gradient gel electrophoresis fingerprinting and sequencing. We also evaluated the effects of biotic and abiotic factors in the structure of the bacterial communities. In parallel, we isolated and characterized diazotrophic bacteria associated with agaves, as Agave soils are characterized by their low nitrogen content. Our results demonstrate that in Agave, the structure of prokaryotic assemblages was mostly influenced by the community group, where the soil, episphere, and endosphere were clearly distinct. Proteobacteria (γ and α), Actinobacteria, and Acidobacteria were the dominant phyla. Bacterial communities in the episphere of agaves were mainly influenced by the host species, whereas in the endosphere were affected by the season. Fifteen bacterial taxa were common and abundant in the endosphere of both Agave species during the dry season. Notably, some of the confirmed diazotrophic strains belonged to this group, suggesting a possible beneficial role in planta.
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Affiliation(s)
- Damaris Desgarennes
- Departamento de Ingeniería Genética, Centro de Investigación y de Estudios Avanzados - Irapuato, Irapuato, México
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Parra-Cota FI, Peña-Cabriales JJ, de los Santos-Villalobos S, Martínez-Gallardo NA, Délano-Frier JP. Burkholderia ambifaria and B. caribensis promote growth and increase yield in grain amaranth (Amaranthus cruentus and A. hypochondriacus) by improving plant nitrogen uptake. PLoS One 2014; 9:e88094. [PMID: 24533068 PMCID: PMC3922803 DOI: 10.1371/journal.pone.0088094] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2013] [Accepted: 01/06/2014] [Indexed: 12/22/2022] Open
Abstract
Grain amaranth is an emerging crop that produces seeds having high quality protein with balanced amino-acid content. However, production is restricted by agronomic limitations that result in yields that are lower than those normally produced by cereals. In this work, the use of five different rhizobacteria were explored as a strategy to promote growth and yields in Amaranthus hypochondriacus cv. Nutrisol and A. cruentus cv. Candil, two commercially important grain amaranth cultivars. The plants were grown in a rich substrate, high in organic matter, nitrogen (N), and phosphorus (P) and under greenhouse conditions. Burkholderia ambifaria Mex-5 and B. caribensis XV proved to be the most efficient strains and significantly promoted growth in both grain amaranth species tested. Increased grain yield and harvest index occurred in combination with chemical fertilization when tested in A. cruentus. Growth-promotion and improved yields correlated with increased N content in all tissues examined. Positive effects on growth also occurred in A. cruentus plants grown in a poor soil, even after N and P fertilization. No correlation between non-structural carbohydrate levels in roots of inoculated plants and growth promotion was observed. Conversely, gene expression assays performed at 3-, 5- and 7-weeks after seed inoculation in plants inoculated with B. caribensis XV identified a tissue-specific induction of several genes involved in photosynthesis, sugar- and N- metabolism and transport. It is concluded that strains of Burkholderia effectively promote growth and increase seed yields in grain amaranth. Growth promotion was particularly noticeable in plants grown in an infertile soil but also occurred in a well fertilized rich substrate. The positive effects observed may be attributed to a bio-fertilization effect that led to increased N levels in roots and shoots. The latter effect correlated with the differential induction of several genes involved in carbon and N metabolism and transport.
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Affiliation(s)
- Fannie I. Parra-Cota
- Centro de Investigación y de Estudios Avanzados-Unidad Irapuato, Irapuato, Guanajuato, México
| | - Juan J. Peña-Cabriales
- Centro de Investigación y de Estudios Avanzados-Unidad Irapuato, Irapuato, Guanajuato, México
| | | | | | - John P. Délano-Frier
- Centro de Investigación y de Estudios Avanzados-Unidad Irapuato, Irapuato, Guanajuato, México
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Ballesteros-Almanza L, Altamirano-Hernandez J, Peña-Cabriales JJ, Santoyo G, Sanchez-Yañez JM, Valencia-Cantero E, Macias-Rodriguez L, Lopez-Bucio J, Cardenas-Navarro R, Farias-Rodriguez R. Effect of co-inoculation with mycorrhiza and rhizobia on the nodule trehalose content of different bean genotypes. Open Microbiol J 2010. [PMID: 21253462 PMCID: PMC3023947 DOI: 10.2174/1874285801004010083] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Studies on Rhizobium-legume symbiosis show that trehalose content in nodules under drought stress correlates positively with an increase in plant tolerance to this stress. Fewer reports describe trehalose accumulation in mycorrhiza where, in contrast with rhizobia, there is no flux of carbohydrates from the microsymbiont to the plant. However, the trehalose dynamics in the Mycorrhiza-Rhizobium-Legume tripartite symbiosis is unknown. The present study explores the role of this tripartite symbiosis in the trehalose content of nodules grown under contrasting moisture conditions. Three wild genotypes (P. filiformis, P. acutifolis and P. vulgaris) and two commercial genotypes of Phaseolus vulgaris (Pinto villa and Flor de Mayo) were used. Co-inoculation treatments were conducted with Glomus intraradices and a mixture of seven native rhizobial strains, and trehalose content was determined by GC/MS. The results showed a negative effect of mycorrhizal inoculation on nodule development, as mycorrhized plants showed fewer nodules and lower nodule dry weight compared to plants inoculated only with Rhizobium. Mycorrhizal colonization was also higher in plants inoculated only with Glomus as compared to plants co-inoculated with both microsymbionts. In regard to trehalose, co-inoculation negatively affects its accumulation in the nodules of each genotype tested. However, the correlation analysis showed a significantly positive correlation between mycorrhizal colonization and nodule trehalose content.
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Affiliation(s)
- L Ballesteros-Almanza
- Instituto de Investigaciones Quimico-Biologicas. Universidad Michoacana de San Nicolas de Hidalgo, Edificio B1 Ciudad Universitaria. Morelia, Michoacan, Mexico
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Bucio-Villalobos CM, Guzmán-de-Peña D, Peña-Cabriales JJ. Aflatoxin synthesis in corn fields in Guanajuato, Mexico. Rev Iberoam Micol 2001; 18:83-7. [PMID: 15487913] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/01/2023] Open
Abstract
Aflatoxin contamination of corn is an important problem internationally, particularly in tropical and subtropical conditions that favor infection and synthesis by Aspergillus. Environmental conditions (drought) and agronomic practices i.e. N fertilization have been reported as favorable to aflatoxin synthesis in the field. This study was undertaken to investigate whether the contamination of corn commonly observed in stored conditions in this important corn producing region of Mexico known as "El Bajio" is related to infection by Aspergillus under field conditions. Results using three corn hybrids of recognized susceptibility to infection showed that corn ears artificially inoculated in the field with a toxigenic strain of Aspergillus parasiticus presented a low content of aflatoxin ranging from 13.6 to 24.7 microg Kg(-1). No significant differences were observed between the hybrids tested. Similarly, N fertilization practices, 260 Kg N ha(-1), applied at sowing did not have an effect on the extent of the contamination observed of 6.2 and 19.3 mg of aflatoxin kg(-1) in natural infected and inoculated samples with A. parasiticus NRRL 2999, respectively. Our data suggest that the cases of aflatoxin contamination of corn in this part of Mexico are not related to infection occurring during the crops growing period but most probably to poor storage conditions of corn.
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Affiliation(s)
- C M Bucio-Villalobos
- Instituto de Ciencias Agricolas, Universidad de Guanajuato, Irapuato, Gto.,México
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Peña-Cabriales JJ, Valdés M. [Rhizosphere of the fir (Abies religiosa) I. Microbiology and microbiological activity]. Rev Latinoam Microbiol 1975; 17:25-31. [PMID: 1056608] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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Abstract
Morphological study of several ectotrophic mycorrhizae of fir (Abies religiosa) showed that they are dichotomic or corralloid, simple or ramified. Four symbiotic fungi were isolated from the mycorrhizae, and judging from the type of infection, they were active and of medium virulence. The macro- and micro-scopic descriptions of each fungal strain show different cultural characteristics as well as different stimulations to the development of the plant.
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