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Puri D, Kumar R, Kumar S, Thakur MS, Fekete G, Lee D, Singh T. Performance analysis and modelling of circular jets aeration in an open channel using soft computing techniques. Sci Rep 2024; 14:3140. [PMID: 38326386 PMCID: PMC10850504 DOI: 10.1038/s41598-024-53407-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Accepted: 01/31/2024] [Indexed: 02/09/2024] Open
Abstract
Dissolved oxygen (DO) is an important parameter in assessing water quality. The reduction in DO concentration is the result of eutrophication, which degrades the quality of water. Aeration is the best way to enhance the DO concentration. In the current study, the aeration efficiency (E20) of various numbers of circular jets in an open channel was experimentally investigated for different channel angle of inclination (θ), discharge (Q), number of jets (Jn), Froude number (Fr), and hydraulic radius of each jet (HRJn). The statistical results show that jets from 8 to 64 significantly provide aeration in the open channel. The aeration efficiency and input parameters are modelled into a linear relationship. Additionally, utilizing WEKA software, three soft computing models for predicting aeration efficiency were created with Artificial Neural Network (ANN), M5P, and Random Forest (RF). Performance evaluation results and box plot have shown that ANN is the outperforming model with correlation coefficient (CC) = 0.9823, mean absolute error (MAE) = 0.0098, and root mean square error (RMSE) = 0.0123 during the testing stage. In order to assess the influence of different input factors on the E20 of jets, a sensitivity analysis was conducted using the most effective model, i.e., ANN. The sensitivity analysis results indicate that the angle of inclination is the most influential input variable in predicting E20, followed by discharge and the number of jets.
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Affiliation(s)
- Diksha Puri
- School of Environmental Science, Shoolini University, Solan, Himachal Pradesh, 173229, India
| | - Raj Kumar
- Department of Mechanical Engineering, Gachon University, Seongnam, 13120, South Korea
| | - Sushil Kumar
- Department of Physics, Hansraj College, University of Delhi, Delhi, 110007, India
| | - M S Thakur
- Department of Civil Engineering, Shoolini University, Solan, Himachal Pradesh, 173229, India
| | - Gusztáv Fekete
- Department of Material Science and Technology, Széchenyi István University, 9026, Győr, Hungary
| | - Daeho Lee
- Department of Mechanical Engineering, Gachon University, Seongnam, 13120, South Korea.
| | - Tej Singh
- Savaria Institute of Technology, Faculty of Informatics, ELTE Eötvös Loránd University, Budapest, 1117, Hungary.
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Mukherjee M, Sistla S, Veerabhadraiah SR, Bettadaiah BK, Thakur MS, Bhatt P. DNA aptamer selection and detection of marine biotoxin 20 Methyl Spirolide G. Food Chem 2021; 363:130332. [PMID: 34144421 DOI: 10.1016/j.foodchem.2021.130332] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Revised: 05/13/2021] [Accepted: 06/07/2021] [Indexed: 01/19/2023]
Abstract
This study reports the selection of DNA aptamer for the detection of 20 Methyl Spirolide G (SPXG). After 10 rounds of selection, theenriched pool of aptamers specific to SPXGwas cloned, sequenced and clustered into seven families based onsimilarity. Three sequences SPX1, SPX2 and SPX7, each belonging to different clades were further evaluated for their binding affinity. Surface plasmonresonancestudies determined the highest affinity KDof 0.0345x10-8 M for aptamer SPX7. A label-free microscale thermophoresis-based aptasensing using SPX7 with highest affinity, indicated a linear detection range from 1.9 to 125000 pg/mL (LOD = 0.39 pg/mL; LOQ = 1.17 pg/mL). Spiking studies in simulated contaminated samples of mussel and scallop indicated recoveries in the range of 86 to 108%. Results of this study indicate the successful development of an aptamer for detection of SPXG at picogram levels. It also opens up avenues to develop other sensing platforms for detection of SPXG using the reported aptamer.
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Affiliation(s)
- Monali Mukherjee
- Microbiology & Fermentation Technology Department, CSIR-Central Food Technological Research Institute (CFTRI), Mysuru 570020, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, UP-201002, India
| | - Srinivas Sistla
- Institute for Structural Biology, Drug Discovery and Development, School of Pharmacy - Dept of Medicinal Chemistry, Virginia Commonwealth University, Richmond, VA 23298, United States
| | - Shivakumar R Veerabhadraiah
- Microbiology & Fermentation Technology Department, CSIR-Central Food Technological Research Institute (CFTRI), Mysuru 570020, India
| | - B K Bettadaiah
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, UP-201002, India; Spices and Flavour Sciences Department, CSIR-Central Food Technological Research Institute (CFTRI), Mysuru 570020, India
| | - M S Thakur
- Microbiology & Fermentation Technology Department, CSIR-Central Food Technological Research Institute (CFTRI), Mysuru 570020, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, UP-201002, India
| | - Praveena Bhatt
- Microbiology & Fermentation Technology Department, CSIR-Central Food Technological Research Institute (CFTRI), Mysuru 570020, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, UP-201002, India.
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Khadka D, Dhamala MK, Li F, Aryal PC, Magar PR, Bhatta S, Thakur MS, Basnet A, Cui D, Shi S. The use of medicinal plants to prevent COVID-19 in Nepal. J Ethnobiol Ethnomed 2021; 17:26. [PMID: 33832492 PMCID: PMC8027983 DOI: 10.1186/s13002-021-00449-w] [Citation(s) in RCA: 45] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2020] [Accepted: 03/10/2021] [Indexed: 05/05/2023]
Abstract
BACKGROUND Medicinal plants are the fundamental unit of traditional medicine system in Nepal. Nepalese people are rich in traditional medicine especially in folk medicine (ethnomedicine), and this system is gaining much attention after 1995. The use of medicinal plants has increased during the COVID-19 pandemic as a private behavior (not under the control of government). A lot of misinterpretations of the use of medicinal plants to treat or prevent COVID-19 have been spreading throughout Nepal which need to be managed proactively. In this context, a research was needed to document medicinal plants used, their priority of use in society, their cultivation status, and the source of information people follow to use them. This study aimed to document the present status of medicinal plant use and make important suggestion to the concerned authorities. METHODS This study used a web-based survey to collect primary data related to medicinal plants used during COVID-19. A total of 774 respondents took part in the survey. The study calculated the relative frequencies of citation (RFC) for the recorded medicinal plants. The relationship between plants recorded and different covariates (age, gender education, occupation, living place, and treatment methods) was assessed using Kruskal-Wallis test and Wilcoxon test. The relationship between the information sources people follow and the respondent characteristics was assessed using chi-square test. RESULTS The study found that the use of medicinal plants has increased during COVID-19 and most of the respondents recommended medicinal plants to prevent COVID-19. This study recorded a total of 60 plants belonging to 36 families. The leaves of the plants were the most frequently used. The Zingiber officinale was the most cited species with the frequency of citation 0.398. Most of the people (45.61%) were getting medicinal plants from their home garden. The medicinal plants recorded were significantly associated with the education level, location of home, primary treatment mode, gender, and age class. The information source of plants was significantly associated with the education, gender, method of treatment, occupation, living with family, and location of home during the lockdown caused by COVID-19. CONCLUSIONS People were using more medicinal plants during COVID-19 claiming that they can prevent or cure COVID-19. This should be taken seriously by concerned authorities. The authorities should test the validity of these medicinal plants and control the flow of false information spread through research and awareness programs.
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Affiliation(s)
- Dipak Khadka
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China
- Environmental Science Program, Golden Gate International College, Battisputali, Kathmandu, Nepal
- Environment Protection and Study Center (ENPROSC), Baneshwor, Kathmandu, Nepal
| | - Man Kumar Dhamala
- Central Department of Environmental Science, Tribhuvan University, Kirtipur, Kathmandu, Nepal
| | - Feifei Li
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing, 100012, P.R. China
| | - Prakash Chandra Aryal
- Environmental Science Program, Golden Gate International College, Battisputali, Kathmandu, Nepal
- Environment Protection and Study Center (ENPROSC), Baneshwor, Kathmandu, Nepal
| | - Pappu Rana Magar
- Provincial Government Ministry of Social Development, Regional Health Directorate, Dhankuta, Province 1, Nepal
| | - Sijar Bhatta
- Environmental Science Program, Golden Gate International College, Battisputali, Kathmandu, Nepal
| | - Manju Shree Thakur
- Environmental Science Program, Golden Gate International College, Battisputali, Kathmandu, Nepal
| | - Anup Basnet
- Environmental Science Program, Golden Gate International College, Battisputali, Kathmandu, Nepal
| | - Dafang Cui
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China.
| | - Shi Shi
- Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China.
- South China Limestone Plants Research Center, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, China.
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Sharma R, Ragavan KV, Thakur MS, Raghavarao KSMS. Recent advances in nanoparticle based aptasensors for food contaminants. Biosens Bioelectron 2015; 74:612-27. [PMID: 26190473 DOI: 10.1016/j.bios.2015.07.017] [Citation(s) in RCA: 134] [Impact Index Per Article: 14.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2015] [Revised: 07/06/2015] [Accepted: 07/10/2015] [Indexed: 12/11/2022]
Abstract
Food safety and hazard analysis is a prime concern of human life, thus quality assessment of food and water is the need of the day. Recent advances in nano-biotechnology play a significant role in providing possible solutions for developing highly sensitive and affordable detection tools for food analysis. Nanomaterials based aptasensors hold great potential to overcome the drawbacks of conventional analytical techniques. Aptamers comprise a novel class of highly specific bio-recognition elements which are produced by SELEX (systematic evolution of ligands by exponential enrichment) process. They bind to target molecules by folding into 3D structures that can discriminate different chiral compounds. The flexibility in making modifications in aptamers contribute to the design of biosensors, enabling the generation of bio-recognition elements for a wide variety of target molecules. Nanomaterials such as metal nanoparticles, metal nanoclusters, metal oxide nanoparticles, metal and carbon quantum dots, graphene, carbon nanotubes and nanocomposites enable higher sensitivity by signal amplification and introduce several novel transduction principles such as enhanced chemiluminescence, fluorescence, Raman signals, electrochemical signals, enhanced catalytic activity, and super-paramagnetic properties to the biosensor. Although there are a few reviews published recently which deal with the potential of aptamers in various fields, none are devoted exclusively to the potential of aptasensors based on nanomaterials for the analysis of food contaminants. Hence, the current review discusses several transduction systems and their principles used in aptamer based nanosensors which have been developed in the past five years, the challenges faced in their designing, along with their strengths and limitations.
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Affiliation(s)
- Richa Sharma
- Department of Food Engineering, CSIR-CFTRI, India; Academy of Scientific and Innovative Research, India
| | - K V Ragavan
- Department of Food Engineering, CSIR-CFTRI, India; Academy of Scientific and Innovative Research, India
| | - M S Thakur
- Materials Science Centre, University of Mysore, Mysore 570005, Karnataka, India.
| | - K S M S Raghavarao
- Department of Food Engineering, CSIR-CFTRI, India; Academy of Scientific and Innovative Research, India.
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5
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Abstract
A novel functionalized aptamer based 'turn-off' fluorescent biosensor for ultra-sensitive detection of small molecules like bisphenol-A in water samples.
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Affiliation(s)
- K V Ragavan
- Fermentation Technology and Bioengineering Department, CSIR-Central Food Technological Research Institute (A Constituent Laboratory of the Council of Scientific and Industrial Research, CSIR), Mysore-570020, Karnataka, India
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Ranjan R, Rastogi NK, Thakur MS. Development of immobilized biophotonic beads consisting of Photobacterium leiognathi for the detection of heavy metals and pesticide. J Hazard Mater 2012; 225-226:114-123. [PMID: 22626628 DOI: 10.1016/j.jhazmat.2012.04.076] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2012] [Revised: 04/10/2012] [Accepted: 04/30/2012] [Indexed: 06/01/2023]
Abstract
The present communication deals with construction of immobilized robust biophotonic bead using P. leiognathi, a marine luminescent bacterium for their possible application in monitoring of environmental toxicants. Immobilization efficiency of agar, carrageenan and sodium alginate was evaluated separately in terms of luminescence response and was recorded as 30.3, 77.4 or 99.5%, respectively. Under optimized storage conditions, the luminescent response of P. leiognathi in the immobilized state was studied over a period of 30 days. These biophotonic beads were further used as a rapid and reliable optical biosensing tool for the detection of heavy metals [Hg(II), As(V) or Cd(II)] and pesticide [2,4-dichlorophenoxyacetic acid (2,4-D)] in water systems. The concentration range for the detection of Hg(II), As(V), Cd(II) and 2,4-D was 2-32ppm, 4-128ppm, 16-512ppm and 100-600ppm, respectively, while corresponding sensitivity threshold was 2.0ppm, 4.0ppm, 16.0ppm and 100ppm. A comparison of inhibition constant (K(d)) (or EC(20)) values indicated that the sensitivity thresholds rank as Hg(II)>As(V)>Cd(II)>2,4-D. Moreover, the time taken for the detection of heavy metals and pesticide was less than 30min. Using the bioluminescence inhibition method, the concentration of heavy metals and pesticide could be predicted.
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Affiliation(s)
- Rajeev Ranjan
- Fermentation Technology and Bioengineering Department, Central Food Technological Research Institute, Mysore 570020, India
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Selvakumar LS, Thakur MS. Nano RNA aptamer wire for analysis of vitamin B₁₂. Anal Biochem 2012; 427:151-7. [PMID: 22658959 DOI: 10.1016/j.ab.2012.05.020] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2012] [Revised: 05/16/2012] [Accepted: 05/20/2012] [Indexed: 10/28/2022]
Abstract
A simple and stable RNA aptamer-based colorimetric sensor for the detection of vitamin B₁₂ using gold nanoparticles (AuNPs) has been proposed. Vitamin B₁₂ belongs to the B vitamin group and prevents pernicious anemia, which is caused by vitamin B₁₂ deficiency. A highly stable RNA aptamer that binds to vitamin B₁₂ was employed by structural modification of 2'-hydroxyl group of ribose to 2'-flouro in all pyrimidines indicated in lowercase in 35-mer aptamer (5' GGA Acc GGu GcG cAu AAc cAc cuc AGu GcG AGc AA 3'). Aggregation of AuNPs was specifically induced by desorption of the vitamin B₁₂ binding RNA aptamer from the surface of AuNPs as a result of the aptamer-target interaction, leading to the color change from red to purple. The level of detection of vitamin B₁₂ was 0.1 μg/ml by successful optimization of the amount of the aptamer, AuNPs, salts, and stability of the aptamer. Analysis of vitamin B₁₂ was carried out, and the observed recovery was 92 to 95.3% with a relative standard deviation in the range of 2.08 to 8.27%. The results obtained were compared with those of the ultraviolet-visible (UV-vis) spectrometry method. This colorimetric aptasensor is advantageous for on-site detection with the naked eye.
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Affiliation(s)
- L S Selvakumar
- Fermentation Technology and Bioengineering Department, Central Food Technological Research Institute-Constituent Laboratory of the Council of Scientific and Industrial Research, CSIR, Mysore 570020, India
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Sowmya N, Thakur MS, Manonmani HK. Rapid and simple DNA extraction method for the detection of enterotoxigenic Staphylococcus aureus directly from food samples: comparison of PCR and LAMP methods. J Appl Microbiol 2012; 113:106-13. [PMID: 22519925 DOI: 10.1111/j.1365-2672.2012.05315.x] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Abstract
AIMS The study describes the development of simple and rapid DNA extraction method in combination with loop-mediated isothermal amplification (LAMP) to detect enterotoxigenic Staphylococcus aureus in food samples. METHODS AND RESULTS In this study, isolation of genomic DNA of enterotoxigenic Staph. aureus from spiked milk, milk burfi, khoa, sugarcane juice and boiled rice was carried out by boiling the isolated sample pellets for 10 min with 1% Triton X-100. The isolated DNA was evaluated by polymerase chain reaction (PCR) and LAMP method. The LAMP was found to be 100 times more sensitive than PCR. The LAMP assay was very specific for Staph. aureus, and the presence of other contaminating bacterial DNAs and food matrix did not interfere or inhibit the LAMP assay. CONCLUSIONS The template DNA extraction method developed in this study for food samples is simple, rapid and cost-effective. LAMP was found to be less sensitive to matrix effect of food, compared to PCR. SIGNIFICANCE AND IMPACT OF THE STUDY The method is suitable for direct detection of Staph. aureus without any enrichment in contaminated food samples and hence finds its application in food safety analysis, in permutation with LAMP.
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Affiliation(s)
- N Sowmya
- Fermentation Technology and Bioengineering Department, Central Food Technological Research Institute (CSIR), Mysore, Karnataka, India
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Selvakumar LS, Thakur MS. Dipstick based immunochemiluminescence biosensor for the analysis of vitamin B12 in energy drinks: a novel approach. Anal Chim Acta 2012; 722:107-13. [PMID: 22444541 DOI: 10.1016/j.aca.2012.02.006] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2011] [Revised: 01/11/2012] [Accepted: 02/05/2012] [Indexed: 01/02/2023]
Abstract
In this article, we describe a dipstick based immunochemiluminescence (immuno-CL) biosensor for the detection of vitamin B(12) in energy drinks. The method is a direct competitive type format involving the immobilization of vitamin B(12) antibody on nitrocellulose membrane (NC) followed by treatment with vitamin B(12) and vitamin B(12)-alkaline phosphatase conjugate to facilitate the competitive binding. The dipstick was further treated with substrate disodium 2-chloro-5-(4-methoxyspiro {1,2-dioxetane-3,2¢-(5¢-chloro)tricyclo[3.3.1.13,7]decan}-4-yl)-1-phenyl phosphate (CDP-Star) to generate chemiluminescence (CL). The number of photons generated was inversely proportional to the vitamin B(12) concentration. After systematic optimization, the limit of detection was 1 ng mL(-1). The coefficient of variation was below 0.2% for both intra- and inter-assay precision. Vitamin B(12) was extracted from energy drinks with recovery ranged from 90 to 99.4%. Two different energy drinks samples were analyzed, and a good correlation was observed when the data were compared with a reference enzyme linked immuno sorbent assay (ELISA) method. The developed method is suitable for an accurate, sensitive, and high-throughput screening of vitamin B(12) in energy drinks samples. The dipstick technique based on immuno-CL is suitable for the detection of several analyte in food and environmental samples.
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Affiliation(s)
- L S Selvakumar
- Fermentation Technology and Bioengineering Department, Central Food Technological Research Institute, Mysore 570020, Karnataka, India
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Babu VRS, Thakur MS, Patra S. Effect of physicochemical parameters on enzymatic biodecaffeination during tea fermentation. Appl Biochem Biotechnol 2011; 166:112-26. [PMID: 22116671 DOI: 10.1007/s12010-011-9408-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2011] [Accepted: 10/18/2011] [Indexed: 11/25/2022]
Abstract
We report for the first time the development of a biodecaffeination process for tea synchronised with tea fermentation process using enzymes isolated from Pseudomonas alcaligenes. Cell-free extract was used for biodecaffeination of tea during fermentation of tea and 80% of the caffeine in the tea dhool was degraded within 90 min of incubation. Several factors that tend to effect the biodecaffeination during this stage, like moisture, aeration, intermittent enzyme addition and mixing, were optimized, and inhibitory interactions of proteins with polyphenols, caffeine-polyphenol interactions, which directly influence the biodecaffeination process were prevented by the use of glycine (5% w/w) in the dhool. Tea decaffeinated through the enzymatic route retained the original flavor and aroma, and there was an increase in the total polyphenol content of the tea.
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Kennedy MJ, Thakur MS, Wang DI, Stephanopoulos GN. Estimating cell concentration in the presence of suspended solids: a light scatter technique. Biotechnol Bioeng 2010; 40:875-88. [PMID: 18601194 DOI: 10.1002/bit.260400803] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
A novel sensor was developed, based on light scatter, to estimate the cell concentration in the presence of suspended solids. The light scatter properties of cells in the presence of suspended solids were investigated. Two crucial observations were made: first, that the light scatter from cells is essentially a linear function of cell concentration and, second, that invariant regions are present in the light scatter spectrum of cell/solid substrate mixtures. Invariant regions are wavelength intervals of the light scatter spectrum in which the light scatter reading is independent of solid substrate concentration and only a function of cell concentration. The occurrence of invariant regions is the key behavior which allowed the quantification of cell concentration in the presence of suspended solids.An algorithm was developed for the estimation, from light scatter data, of cell concentration in the presence of solid substrate. The light scatter approach was validated by comparing cell concentrations estimated by this technique to those obtained from DNA and carbon dioxide evolution rate measurements during a series of fermentations. The model system used was Bacillus subtilis var sakainensis ATCC 21394 growing on fishmeal as the sole nitrogen source.A model was developed based on the interactions of scatter and absorbance. This model reflects the hypothesis that invariant regions are caused by changes in the absorbance of the solid substrate as a function of wavelength.
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Affiliation(s)
- M J Kennedy
- Chemical Engineering Department and Biotechnology Process Engineering Center, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
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Roy JJ, Abraham TE, Abhijith KS, Kumar PVS, Thakur MS. Biosensor for the determination of phenols based on cross-linked enzyme crystals (CLEC) of laccase. Biosens Bioelectron 2008; 21:206-11. [PMID: 15967371 DOI: 10.1016/j.bios.2004.08.024] [Citation(s) in RCA: 87] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2004] [Revised: 08/20/2004] [Accepted: 08/20/2004] [Indexed: 10/26/2022]
Abstract
Cross-linked enzyme crystals (CLECs) are a versatile form of biocatalyst that can also be used for biosensor application. Laccase from Trametes versicolor (E.C.1.10.3.2) was crystallized, cross-linked and lyophilized with beta-cyclodextrin. The CLEC laccase was found to be highly active towards phenols like 2-amino phenol, guaiacol, catechol, pyrogallol, catechin and ABTS (non-phenolic). The CLEC laccase was embedded in 30% polyvinylpropylidone (PVP) gel and mounted into an electrode to make the sensor. The biosensor was used to detect the phenols in 50-1000 micromol concentration level. Phenols with lower molecular weight such as 2-amino phenol, catechol and pyrogallol gave a short response time where as the higher molecular weight substrates like catechin and ABTS had comparatively a long response time. The optimum pH of the analyte was 5.5-6.0 when catechol was used as substrate. The CLEC laccase retained good activity for over 3 months.
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Affiliation(s)
- J Jegan Roy
- Bioactive Polymer Engineering Section, Polymer Science Division, Regional Research Laboratory (CSIR), Trivandrum 695019, India
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Babu VRS, Patra S, Karanth NG, Kumar MA, Thakur MS. Development of a biosensor for caffeine. Anal Chim Acta 2007; 582:329-34. [PMID: 17386510 DOI: 10.1016/j.aca.2006.09.017] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2006] [Revised: 09/07/2006] [Accepted: 09/09/2006] [Indexed: 11/28/2022]
Abstract
We have utilized a microbe, which can degrade caffeine to develop an Amperometric biosensor for determination of caffeine in solutions. Whole cells of Pseudomonas alcaligenes MTCC 5264 having the capability to degrade caffeine were immobilized on a cellophane membrane with a molecular weight cut off (MWCO) of 3000-6000 by covalent crosslinking method using glutaraledhyde as the bifunctional crosslinking agent and gelatin as the protein based stabilizing agent (PBSA). The biosensor system was able to detect caffeine in solution over a concentration range of 0.1 to 1 mg mL(-1). With read-times as short as 3 min, this caffeine biosensor acts as a rapid analysis system for caffeine in solutions. Interestingly, successful isolation and immobilization of caffeine degrading bacteria for the analysis of caffeine described here was enabled by a novel selection strategy that incorporated isolation of caffeine degrading bacteria capable of utilizing caffeine as the sole source of carbon and nitrogen from soils and induction of caffeine degrading capacity in bacteria for the development of the biosensor. This biosensor is highly specific for caffeine and response to interfering compounds such as theophylline, theobromine, paraxanthine, other methyl xanthines and sugars was found to be negligible. Although a few biosensing methods for caffeine are reported, they have limitations in application for commercial samples. The development and application of new caffeine detection methods remains an active area of investigation, particularly in food and clinical chemistry. The optimum pH and temperature of measurement were 6.8 and 30+/-2 degrees C, respectively. Interference in analysis of caffeine due to different substrates was observed but was not considerable. Caffeine content of commercial samples of instant tea and coffee was analyzed by the biosensor and the results compared well with HPLC analysis.
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Affiliation(s)
- V R Sarath Babu
- Fermentation Technology and Bioengineering Department, Central Food Technological Research Institute, Mysore 570020, India
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Chouhan RS, Vivek Babu K, Kumar MA, Neeta NS, Thakur MS, Amitha Rani BE, Pasha A, Karanth NGK, Karanth NG. Detection of methyl parathion using immuno-chemiluminescence based image analysis using charge coupled device. Biosens Bioelectron 2006; 21:1264-71. [PMID: 16054353 DOI: 10.1016/j.bios.2005.05.018] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2005] [Revised: 05/09/2005] [Accepted: 05/31/2005] [Indexed: 11/17/2022]
Abstract
A novel method based on immuno-chemiluminescence and image analysis using charge coupled device (CCD) for the qualitative detection of methyl parathion (MP) with high sensitivity (up to 10 ppt) is described. MP antibodies raised in poultry were used as a biological sensing element for the recognition of MP present in the sample. The immuno-reactor column was prepared by packing in a glass capillary column (150 microl capacity) MP antibodies immobilized on Sepharose CL-4B through periodate oxidation method. Chemiluminescence principle was used for the detection of the pesticide. Light images generated during the chemiluminescence reaction were captured by a CCD camera and further processed for image intensity, which was correlated with pesticide concentrations. K(3)Fe(CN)(6) was used as a light enhancer to obtain detectable light images. Different parameters including concentrations of K(3)Fe(CN)(6), luminol, urea H(2)O(2), antibody, addition sequence of reactants and incubation time to obtain best images were optimized. The results obtained by image analysis method showed very good correlation with that of competitive ELISA for methyl parathion detection. Competitive ELISA method was used as a reference to compare the results obtained by CCD imaging.
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Affiliation(s)
- R S Chouhan
- Fermentation Technology and Bioengineering Department, Central Food Technological Research Institute, Mysore 570013, India
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15
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Kandimalla VB, Neeta NS, Karanth NG, Thakur MS, Roshini KR, Rani BEA, Pasha A, Karanth NGK. Regeneration of ethyl parathion antibodies for repeated use in immunosensor: a study on dissociation of antigens from antibodies. Biosens Bioelectron 2004; 20:903-6. [PMID: 15522608 DOI: 10.1016/j.bios.2004.03.027] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2004] [Revised: 03/23/2004] [Accepted: 03/25/2004] [Indexed: 10/26/2022]
Abstract
Reliable analysis using an immunosensor strongly depends on the specificity, activity, and sensitivity of the antibody. Immobilization of antibody on the solid matrix enables its repeated use, for which it is required to dissociate the antigens and antigen-enzyme conjugate from the immobilized antibody matrix after each use and while doing so, a maximum retention of activity and specificity are crucial requirements. In the present investigation, on the development of an immunosensor for the organophosphorus pesticide ethyl parathion (EP) using EP antibodies, different dissociating agents such as organic solvents, detergents and acidic buffers, that is, dimethyl sulphoxide (DMSO), Tween-20, cetyl trimethylammonium bromide (CTAB), methanol, chloroform, guanidium chloride (GdmCl), glycine-HCl (Gly-HCl) buffer in the pH range of 1.5-3.0, pierce buffer and combination of DMSO and methanol in phosphate buffer and Gly-HCl buffer and salts like NaCl and MgCl2 were used. Generally about 50-60% dissociation was obtained with some degree of denaturation of the antibody immobilized on the sepharose matrix. However, 1% DMSO in combination with 0.2 M Gly-HCl buffer at a pH of 2.3 showed 97% dissociation and the immobilized antibody retained sufficient activity to carry out 14 reproducible assays for EP.
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Affiliation(s)
- V B Kandimalla
- Fermentation Technology and Bioengineering Department, Central Food Technological Research Institute, Mysore 570 013, India
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16
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Gulla KC, Gouda MD, Thakur MS, Karanth NG. Enhancement of stability of immobilized glucose oxidase by modification of free thiols generated by reducing disulfide bonds and using additives. Biosens Bioelectron 2004; 19:621-5. [PMID: 14683646 DOI: 10.1016/s0956-5663(03)00258-6] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
Stability of glucose oxidase (GOD) immobilized with lysozyme has been considerably enhanced by modification of free thiols generated by reducing disulfide bonds using beta-mercaptoethanol and N-ethylmaleimide in conjunction with additives like antibiotics and salts. Thermal stability of immobilized GOD was quantified by means of the transition temperature, Tm and the operational stability by half-life t1/2 at 70 degrees C. Modification of the free thiols in the enzyme coupled with the presence of kanamycin, NaCl, and K2SO4, led to increase in Tm, to 80, 82 and 84 degrees C (compared to 75 degrees C in control) and t1/2 by 7.7-, 11- and 22-fold, respectively, indicating that this method can be effectively used for enhancing the stability of enzymes.
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Affiliation(s)
- K C Gulla
- Department of Fermentation Technology and Bioengineering, Central Food Technological Research Institute, Mysore 570013, India
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17
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Sarath Babu VR, Kumar MA, Karanth NG, Thakur MS. Stabilization of immobilized glucose oxidase against thermal inactivation by silanization for biosensor applications. Biosens Bioelectron 2004; 19:1337-41. [PMID: 15046768 DOI: 10.1016/j.bios.2003.11.024] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2003] [Revised: 09/16/2003] [Accepted: 11/26/2003] [Indexed: 10/26/2022]
Abstract
An important requirement of immobilized enzyme based biosensors is the thermal stability of the enzyme. Studies were carried out to increase thermal stability of glucose oxidase (GOD) for biosensor applications. Immobilization of the enzyme was carried out using glass beads as support and the effect of silane concentration (in the range 1-10%) during the silanization step on the thermal stability of GOD has been investigated. Upon incubation at 70 degrees C for 3h, the activity retention with 1% silane was only 23%, which increased with silane concentration to reach a maximum up to 250% of the initial activity with 4% silane. Above this concentration the activity decreased. The increased stability of the enzyme in the presence of high silane concentrations may be attributed to the increase in the surface hydrophobicity of the support. The decrease in the enzyme stability for silane concentrations above 4% was apparently due to the uneven deposition of the silane layer on the glass bead support. Further work on thermal stability above 70 degrees C was carried out by using 4% silane and it was found that the enzyme was stable up to 75 degrees C with an increased activity of 180% after 3-h incubation. Although silanization has been used for the modification of the supports for immobilization of enzymes, the use of higher concentrations to stabilize immobilized enzymes is being reported for the first time.
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Affiliation(s)
- V R Sarath Babu
- Fermentation Technology and Bioengineering Department, Central Food Technological Research Institute, Mysore 570013, India
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18
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Abstract
Glucose oxidase (GOD) was immobilized by using glutaraldehyde crosslinking and various stabilizing agents such as BSA, gelatin, lysozyme, and polyethylenimine (PEI). Studies on the denaturation of the soluble as well as immobilized GOD were carried out for 1 h at various concentrations of guanidine hydrochloride (GdmCl) in 50 mM phosphate buffer, pH 6.0 at 25 +/- 1 degrees C. The soluble enzyme required a GdmCl concentration of 5 M for total activity loss, whereas for GOD immobilized with BSA, gelatin, lysozyme, and heat-inactivated lysozyme, the corresponding GdmCl concentration required was 8 M. GOD immobilized with PEI, however, was more stable and retained 25% activity when denatured for 1 h using 8 M GdmCl. However, after undergoing denaturation for 1 h, GOD immobilized with lysozyme regained 72% original activity within 20 min of renaturation, while GOD immobilized with BSA, PEI, gelatin, and heat-inactivated lysozyme regained only 39, 21, 20, and 25% of activity, respectively. After five cycles of repeated denaturation and renaturation with 8 M GdmCl, GOD immobilized with lysozyme retained 70% of the original activity. Refolding ability of lysozyme, glutaraldehyde crosslinkages between lysozyme and GOD, together with ionic interactions between them, appear to play an important role in the denaturation-renaturation behavior of the immobilized enzyme.
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Affiliation(s)
- M D Gouda
- Fermentation Technology and Bioengineering Department, Central Food Technological Research Institute, Mysore, India
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19
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Gouda MD, Kumar MA, Thakur MS, Karanth NG. Enhancement of operational stability of an enzyme biosensor for glucose and sucrose using protein based stabilizing agents. Biosens Bioelectron 2002; 17:503-7. [PMID: 11959471 DOI: 10.1016/s0956-5663(02)00021-0] [Citation(s) in RCA: 90] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
With the incorporation of lysozyme during the immobilization step, considerable enhancement of the operational stability of a biosensor has been demonstrated in the case of an immobilized single enzyme (glucose oxidase) system for glucose and multienzyme (invertase, mutarotase and glucose oxidase) system for sucrose. Thus an increased number of repeated analyses of 750 samples during 230 days for glucose and 400 samples during 40 days of operation for sucrose have been achieved. The increased operational stability of immobilized single and multienzyme system, will improve the operating cost effectiveness of the biosensor.
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Affiliation(s)
- M D Gouda
- Central Food Technological Research Institute, Mysore 570013, India
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20
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Gulla KC, Gouda MD, Thakur MS, Karanth NG. Reactivation of immobilized acetyl cholinesterase in an amperometric biosensor for organophosphorus pesticide. Biochim Biophys Acta 2002; 1597:133-9. [PMID: 12009412 DOI: 10.1016/s0167-4838(02)00268-6] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
Biosensors based on acetyl cholinesterase (AChE) inhibition have been known for monitoring of pesticides in food and water samples. However, strong inhibition of the enzyme is a major drawback in practical application of the biosensor which can be overcome by reactivation of the enzyme for repeated use. In the present study, enzyme reactivation by oximes was explored for this purpose. Two oximes viz., 1,1'-trimethylene bis 4-formylpyridinium bromide dioxime (TMB-4) and pyridine 2-aldoxime methiodide (2-PAM) were compared for the reactivation of the immobilized AChE. TMB-4 was found to be a more efficient reactivator under repeated use, retaining more than 60% of initial activity after 11 reuses, whereas in the case of 2-PAM, the activity retention dropped to less than 50% after only 6 reuses. Investigations also showed that reactivation must be effected within 10 min after each analysis to eliminate the ageing effect, which reduces the efficiency of reactivation.
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Affiliation(s)
- K C Gulla
- Fermentation Technology and Bioengineering Department, Central Food Technological Research Institute, Mysore 570013, India
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Affiliation(s)
- K Rekha
- Fermentation Technology and Bioengineering Department, Central Food Technological Research Institute, Mysore, India
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Abstract
Measuring cell concentration is of fundamental importance in many biochemical processes. However, this measurement is very difficult to make when solid particles are present along with the cells. This review examines strategies that have been used to estimate cell concentration in the presence of solid particles.
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Affiliation(s)
- M J Kennedy
- Chemical Engineering Department, Massachusetts Institute of Technology, Cambridge 02139
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Abstract
In recent years due to acute shortage of calf-rennet, microbial rennets seem to be an effective alternative and are commercially produced. Mucor miehei was cultivated under the solid state fermentation conditions, and the moldy bran was extracted using a semicontinuous multiple contact forced percolation method. The treated extract was then filtered through 5% R16 clay which enabled easy and efficient removal of impurities such as lipase and protease without involving costly chemical treatments. The ethyl alcohol precipitated enzyme was dried and made into powder form having activity of 1.5 x 10(5)Soxhlet units/gm.
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Affiliation(s)
- M S Thakur
- Fermentation Technology and Bioengineering Discipline, Central Food Technological Research Institute, Mysore, India
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Kennedy MJ, Thakur MS. The use of neural networks to aid in microorganism identification: a case study of Haemophilus species identification. Antonie Van Leeuwenhoek 1993; 63:35-8. [PMID: 8480990 DOI: 10.1007/bf00871729] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
Neural networks were evaluated as a tool for identifying microorganisms. Data from a microorganism identification table were used to train a neural network. Based on the results of identification tests the neural network could correctly identify each Haemophilus species from a group of 13 Haemophilus species.
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Affiliation(s)
- M S Thakur
- Fermentation Technology and Bioengineering Discipline, Central Food Technological Research Institute, Mysore, India
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Thakur MS, Prapulla SG, Jaleel SA, Prasad MS, Ghildyal NP, Lonsane BK. Cultural stability of Streptomyces fradiae in the production of xylose isomerase: studies in shake flasks. Folia Microbiol (Praha) 1988; 33:21-8. [PMID: 3283001 DOI: 10.1007/bf02928009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Comprehensive studies of pure colonies of Streptomyces fradiae in the production of xylose isomerase by submerged fermentation at shake flask level revealed poor culture stability with respect to enzyme production, biomass formation, degree of pigmentation, quantity of glucose and xylose utilization, level of enzyme in cell-free culture broth and final pH of the fermentation medium. The results serve to stress obligatory evaluation of culture stability of Streptomyces strains in determining their suitability for use in developing fermentation processes for commercial exploitation.
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Affiliation(s)
- M S Thakur
- Central Food Technological Research Institute, Mysore, India
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27
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Abstract
About 10 species of Fusarium were screened and tested for their growth regulatory activity on oat coleoptile straight growth test. Culture filtrates of four species contained growth-stimulating factors while others showed growth-inhibition responses on oat sections. On the whole, F. moniliforme was found to be produce higher stimulatory effects. Chromatographic analysis revealed the presence of several indole auxin and gibberellin-like plant-growth regulators in their culture filtrates. The quantity and biological activity of each indole spot was also measured.
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