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Güvendi M, Can H, Köseoğlu AE, Erkunt Alak S, Ün C. First report of a novel 108 bp deletion and five novel SNPs in PRNP gene of stray cats and in silico analysis of their possible relation with feline spongiform encephalopathy. Top Companion Anim Med 2024; 59:100859. [PMID: 38508487 DOI: 10.1016/j.tcam.2024.100859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2023] [Revised: 01/03/2024] [Accepted: 03/14/2024] [Indexed: 03/22/2024]
Abstract
Prion diseases are fatal neurodegenerative diseases affecting humans and animals. A relationship between variations in the prion gene of some species and susceptibility to prion diseases has been detected. However, variations in the prion protein of cats that have close contact with humans and their effect on prion protein are not well-known. Therefore, this study aimed to investigate the variations of prion protein-encoding gene (PRNP gene) in stray cats and to evaluate variants detected in terms of genetic factors associated with susceptibility or resistance to feline spongiform encephalopathy using bioinformatics tools. For this, cat DNA samples were amplified by a PCR targeting PRNP gene and then sequenced to reveal the variations. Finally, the effects of variants on prion protein were predicted by bioinformatics tools. According to the obtained results, a novel 108 bp deletion and nine SNPs were detected. Among SNPs, five (c314A>G, c.454T>A, c.579G>C, c.642G>C and c.672G>C) were detected for the first time in this study. Bioinformatics findings showed that c.579G>C (Q193H), c.454T>A (Y152N) and c.457G>A (E153K) variants have deleterious effects on prion protein and c.579G>C (Q193H) has high amyloid propensities. This study demonstrates prion protein variants of stray cats and their deleterious effects on prion protein for the first time.
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Affiliation(s)
- Mervenur Güvendi
- Ege University Faculty of Science, Department of Biology, Molecular Biology Section, İzmir, Türkiye
| | - Hüseyin Can
- Ege University Faculty of Science, Department of Biology, Molecular Biology Section, İzmir, Türkiye
| | - Ahmet Efe Köseoğlu
- Biruni University, Faculty of Engineering and Natural Sciences, Department of Molecular Biology and Genetics, İstanbul, Türkiye
| | - Sedef Erkunt Alak
- Ege University Faculty of Science, Department of Biology, Molecular Biology Section, İzmir, Türkiye
| | - Cemal Ün
- Ege University Faculty of Science, Department of Biology, Molecular Biology Section, İzmir, Türkiye.
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Köseoğlu AE, Can H, Güvendi M, Erkunt Alak S, Değirmenci Döşkaya A, Karakavuk M, Döşkaya M, Ün C. Molecular characterization of Anaplasma ovis Msp4 protein in strains isolated from ticks in Turkey: A multi-epitope synthetic vaccine antigen design against Anaplasma ovis using immunoinformatic tools. Biologicals 2024; 85:101749. [PMID: 38325003 DOI: 10.1016/j.biologicals.2024.101749] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Revised: 01/07/2024] [Accepted: 01/29/2024] [Indexed: 02/09/2024] Open
Abstract
Tick-borne pathogens increasingly threaten animal and human health as well as cause great economic loss in the livestock industry. Among these pathogens, Anaplasma ovis causing a decrease in meat and milk yield is frequently detected in sheep in many countries including Turkey. This study aimed to reveal potential vaccine candidate epitopes in Msp4 protein using sequence data from Anaplasma ovis isolates and then to design a multi-epitope protein to be used in vaccine formulations against Anaplasma ovis. For this purpose, Msp4 gene was sequenced from Anaplasma ovis isolates (n:6) detected in ticks collected from sheep in Turkey and the sequence data was compared with previous sequences from different countries in order to detect the variations of Msp4 gene/protein. Potential vaccine candidate and diagnostic epitopes were predicted using various immunoinformatics tools. Among the discovered vaccine candidate epitopes, antigenic and conserved were selected, and then a multi-epitope protein was designed. The designed vaccine protein was tested for the assessment of TLR-2, IgG, and IFN-g responses by molecular docking and immune simulation analyses. Among the discovered epitopes, EVASEGSGVM and YQFTPEISLV epitopes with properties of high antigenicity, non-allergenicity, and non-toxicity were proposed to be used for Anaplasma ovis in further serodiagnostic and vaccine studies.
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Affiliation(s)
- Ahmet Efe Köseoğlu
- Duisburg-Essen University, Faculty of Chemistry, Department of Environmental Microbiology and Biotechnology, Essen, Germany
| | - Hüseyin Can
- Ege University, Faculty of Science, Department of Biology, Molecular Biology Section, İzmir, Turkiye; Ege University, Vaccine Development Application and Research Center, İzmir, Turkiye; Ege University, Institute of Health Sciences, Department of Vaccine Studies, İzmir, Turkiye
| | - Mervenur Güvendi
- Ege University, Faculty of Science, Department of Biology, Molecular Biology Section, İzmir, Turkiye
| | - Sedef Erkunt Alak
- Ege University, Faculty of Science, Department of Biology, Molecular Biology Section, İzmir, Turkiye; Ege University, Vaccine Development Application and Research Center, İzmir, Turkiye
| | - Aysu Değirmenci Döşkaya
- Ege University, Vaccine Development Application and Research Center, İzmir, Turkiye; Ege University, Institute of Health Sciences, Department of Vaccine Studies, İzmir, Turkiye; Ege University, Faculty of Medicine, Department of Parasitology, İzmir, Turkiye
| | - Muhammet Karakavuk
- Ege University, Vaccine Development Application and Research Center, İzmir, Turkiye; Ege University, Institute of Health Sciences, Department of Vaccine Studies, İzmir, Turkiye; Ege University, Odemis Vocational School, İzmir, Turkiye
| | - Mert Döşkaya
- Ege University, Vaccine Development Application and Research Center, İzmir, Turkiye; Ege University, Institute of Health Sciences, Department of Vaccine Studies, İzmir, Turkiye; Ege University, Faculty of Medicine, Department of Parasitology, İzmir, Turkiye
| | - Cemal Ün
- Ege University, Faculty of Science, Department of Biology, Molecular Biology Section, İzmir, Turkiye; Ege University, Vaccine Development Application and Research Center, İzmir, Turkiye; Ege University, Institute of Health Sciences, Department of Vaccine Studies, İzmir, Turkiye.
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Bilgen N, Güvendi M, Sezgin E, Can H, Köseoğlu AE, Erkunt Alak S, Döşkaya M, Ün C. Mitotyping of random bred cats and pure breed cats (Turkish Angora and Turkish Van) using non-repetitive mitochondrial DNA control region. Gene 2024; 892:147849. [PMID: 37776989 DOI: 10.1016/j.gene.2023.147849] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Revised: 08/29/2023] [Accepted: 09/26/2023] [Indexed: 10/02/2023]
Abstract
The Fertile Crescent appears to be the most plausible region where the domestication of cats commenced through a mutually beneficial relationship between wild cats and early agrarian societies. These domesticated cats then journeyed across the globe mirroring the paths of human migration. An examination of mitochondrial DNA (mtDNA) control region-based mitotyping suggested that a significant majority, exceeding 80%, of globally sampled random-bred and pure-bred cats could be categorized into 12 predominant mitotypes. However, the extent of mitotype diversity within random-bred cats from regions proximate to the Fertile Crescent remains inadequately explored. In light of this we aimed to investigate the mitotype diversity in random bred cats sampled from various regions across Turkey. Additionally, we sought to establish a comparison with the mitotype profiles of locally recognized pure breeds, namely the Turkish Angora and Turkish Van. To unravel their evolutionary narratives, we engaged in comprehensive population genetics analyses at both the individual and mitotype-based levels. Our study encompassed a sample size of 240 specimens, forming the basis for both mitotyping and population genetics scrutiny. Our analysis yielded the identification of nine 'universal' mitotypes (A-J), alongside an 'outlier' mitotype group I. Notably mitotypes A and D emerged as particularly prevalent in contrast to the lesser occurrence mitotypes C, G, and H. With the realm of random bred cats the structure of haplotypes exhibited remarkable diversity presenting distinctions from Turkish Angora and Van breeds. Nucleotide diversity was higher compared to previous reports from Turkey and was one of the highest among reported world cat population estimates. Intriguingly, our investigations did not unveil any pronounced instances of strong selection, population expansions or contractions within any specific population or mitotype. To conclude, our study represents a pioneering effort in uncovering the mitotype profiles and haplotype structures inherent to both random-bred and pure breed cats in Turkey. This endeavor not only broadens our understanding of the feline genetic landscape within the region but also lays the foundation for future inquiries into the evolutionary trajectories and genetic legacies of these feline populations.
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Affiliation(s)
- Nüket Bilgen
- Ankara University, Faculty of Veterinary Medicine, Department of Animal Genetics, Ankara, Türkiye
| | - Mervenur Güvendi
- Ege University, Faculty of Science, Department of Biology Molecular Biology Section, İzmir, Türkiye
| | - Efe Sezgin
- İzmir Institute of Technology, Department of Food Engineering, İzmir, Türkiye
| | - Hüseyin Can
- Ege University, Faculty of Science, Department of Biology Molecular Biology Section, İzmir, Türkiye
| | - Ahmet Efe Köseoğlu
- Biruni University, Faculty of Engineering and Natural Sciences, Department of Molecular Biology and Genetics, İstanbul, Türkiye
| | - Sedef Erkunt Alak
- Ege University, Faculty of Science, Department of Biology Molecular Biology Section, İzmir, Türkiye
| | - Mert Döşkaya
- Ege University, Faculty of Medicine, Department of Parasitology, İzmir, Türkiye
| | - Cemal Ün
- Ege University, Faculty of Science, Department of Biology Molecular Biology Section, İzmir, Türkiye.
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Sürgeç E, Güvendi M, Karakavuk M, Erkunt Alak S, Değirmenci Döşkaya A, Ün C, Döşkaya M, Gürüz AY, Can H. Genotyping of Enterocytozoon bieneusi isolates detected in stray cats of İzmir, Türkiye. Parasitol Res 2023; 122:2729-2735. [PMID: 37707609 DOI: 10.1007/s00436-023-07974-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Accepted: 09/07/2023] [Indexed: 09/15/2023]
Abstract
The phylum Microsporidia includes obligate intracellular parasites that can infect humans and various animals. To date, 17 different species within the phylum have been reported to infect humans. Among them, Enterocytozoon bieneusi (E. bieneusi) is one of the most frequently detected species in humans. Identification of E. bieneusi as well as its genotypes in humans and animals is important to reveal their role in transmission to each other. Cats are blamed as the source of E. bieneusi transmission to humans. In this study, we aimed to genotype 170 E. bieneusi positive samples isolated from stool of stray cats living in İzmir province of Türkiye. According to the results, 47 samples were amplified by nested PCR protocol targeting ITS region and successfully sequenced. The phylogenetic analysis showed the presence of zoonotic genotype D and type IV in stray cats, which are also frequently detected in humans. Among the E. bieneusi genotypes detected, the prevalence of type IV (93.6%; 44/47) was very high compared to genotype D. Overall, the identification of zoonotic genotypes of E. bieneusi supports that stray cats can play an important role in the transmission of E. bieneusi to humans in İzmir.
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Affiliation(s)
- Ecem Sürgeç
- Ege University Faculty of Science, Department of Biology Zoology Section, İzmir, Türkiye
| | - Mervenur Güvendi
- Ege University Faculty of Science, Department of Biology Molecular Biology Section, İzmir, Türkiye
| | - Muhammet Karakavuk
- Ege University Ödemiş Vocational School, İzmir, Türkiye
- Ege University Vaccine Development Application and Research Center, İzmir, Türkiye
| | - Sedef Erkunt Alak
- Ege University Vaccine Development Application and Research Center, İzmir, Türkiye
| | - Aysu Değirmenci Döşkaya
- Ege University Vaccine Development Application and Research Center, İzmir, Türkiye
- Ege University Faculty of Medicine, Department of Parasitology, İzmir, Türkiye
- Ege University Institute of Health Sciences, Department of Vaccine Studies, İzmir, Türkiye
| | - Cemal Ün
- Ege University Faculty of Science, Department of Biology Molecular Biology Section, İzmir, Türkiye
- Ege University Vaccine Development Application and Research Center, İzmir, Türkiye
- Ege University Institute of Health Sciences, Department of Vaccine Studies, İzmir, Türkiye
| | - Mert Döşkaya
- Ege University Vaccine Development Application and Research Center, İzmir, Türkiye
- Ege University Faculty of Medicine, Department of Parasitology, İzmir, Türkiye
- Ege University Institute of Health Sciences, Department of Vaccine Studies, İzmir, Türkiye
| | - Adnan Yüksel Gürüz
- Ege University Vaccine Development Application and Research Center, İzmir, Türkiye
- Ege University Faculty of Medicine, Department of Parasitology, İzmir, Türkiye
- Ege University Institute of Health Sciences, Department of Vaccine Studies, İzmir, Türkiye
| | - Hüseyin Can
- Ege University Faculty of Science, Department of Biology Molecular Biology Section, İzmir, Türkiye.
- Ege University Vaccine Development Application and Research Center, İzmir, Türkiye.
- Ege University Institute of Health Sciences, Department of Vaccine Studies, İzmir, Türkiye.
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Can H, Güvendi M, Sürgeç E, Köseoğlu AE, Erkunt Alak S, Karakavuk M, Gül A, Döşkaya M, Gürüz AY, Ün C, Değirmenci Döşkaya A. Genetic characterization of Bartonella henselae samples isolated from stray cats by multi-locus sequence typing. BMC Vet Res 2023; 19:195. [PMID: 37805521 PMCID: PMC10559530 DOI: 10.1186/s12917-023-03748-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Accepted: 09/22/2023] [Indexed: 10/09/2023] Open
Abstract
BACKGROUND Bartonella henselae is one of the most commonly identified Bartonella species associated with several human diseases. Although B. henselae was detected in humans and cats in Turkey, they have not been genotyped previously. Therefore, this study aimed to genotype B. henselae samples (n = 44) isolated from stray cats using the multi-locus sequence typing (MLST) method. For this aim, eight different housekeeping markers were amplified by nested PCR and then sequenced to reveal sequence types (STs) of B. henselae samples. RESULTS Allelic profiles obtained from 40 B. henselae isolates (90.9%) were compatible with available allelic profiles in the MLST online database. However, allelic profiles obtained from the remaining 4 B. henselae isolates (9.1%) were incompatible with the database. Among B. henselae isolates with compatible allelic profiles, 5 different STs including ST1, ST5, ST9, ST35 and ST36 were identified according to the B. henselae MLST online database. ST35 was the most prevalent ST with a prevalence rate of 29.5% (13/44), followed by ST36 with a prevalence rate of 22.7% (10/44). In addition, ST5 (16%, 7/44) and ST9 (18.2%, 8/44) were also among the prevalent STs. The prevalence of ST1 was 4.5% (2/44). For B. henselae isolates with incompatible allelic profiles, we recommended a new ST called ST38. CONCLUSION The present study genotyped B. henselae samples isolated from stray cats in Turkey for the first time and ST1, ST5, ST9, ST35, and ST36 as well as a new sequence type named ST38 were identified among these B. henselae isolates.
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Affiliation(s)
- Hüseyin Can
- Faculty of Science, Department of Biology Molecular Biology Section, Ege University, İzmir, Turkey
| | - Mervenur Güvendi
- Faculty of Science, Department of Biology Molecular Biology Section, Ege University, İzmir, Turkey
| | - Ecem Sürgeç
- Faculty of Science, Department of Biology Zoology Section, Ege University, İzmir, Turkey
| | - Ahmet Efe Köseoğlu
- Faculty of Engineering and Natural Sciences, Department of Molecular Biology and Genetics, Biruni University, İstanbul, Turkey
| | - Sedef Erkunt Alak
- Ege University Vaccine Development Application and Research Center, İzmir, Turkey
| | - Muhammet Karakavuk
- Ege University Vaccine Development Application and Research Center, İzmir, Turkey
- Ege University Ödemiş Vocational School, İzmir, Turkey
| | - Aytül Gül
- Faculty of Engineering, Department of Bioengineering, Ege University, İzmir, Turkey
- Department of Bioengineering, Ege University Graduate School of Natural and Applied Sciences, Izmir, Turkey
| | - Mert Döşkaya
- Ege University Vaccine Development Application and Research Center, İzmir, Turkey
- Faculty of Medicine, Department of Parasitology, Ege University, İzmir, Turkey
| | - Adnan Yüksel Gürüz
- Ege University Vaccine Development Application and Research Center, İzmir, Turkey
- Faculty of Medicine, Department of Parasitology, Ege University, İzmir, Turkey
| | - Cemal Ün
- Faculty of Science, Department of Biology Molecular Biology Section, Ege University, İzmir, Turkey
| | - Aysu Değirmenci Döşkaya
- Ege University Vaccine Development Application and Research Center, İzmir, Turkey.
- Faculty of Medicine, Department of Parasitology, Ege University, İzmir, Turkey.
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Değirmenci Döşkaya A, Can H, Gül A, Karakavuk T, Güvendi M, Karakavuk M, Gül C, Erkunt Alak S, Ün C, Gürüz AY, Döşkaya M. A preliminary study to develop a lateral flow assay using recombinant GRA1 protein for the diagnosis of toxoplasmosis in stray cats. Comp Immunol Microbiol Infect Dis 2023; 101:102057. [PMID: 37647822 DOI: 10.1016/j.cimid.2023.102057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2023] [Revised: 08/19/2023] [Accepted: 08/26/2023] [Indexed: 09/01/2023]
Abstract
Toxoplasma gondii is a protozoan parasite that may infect many mammals including humans. Cats are one of the main sources of infection for humans. Therefore, routine screening of cats with tests that are inexpensive, rapid, and do not require sophisticated laboratory equipment is important. In this study, a lateral flow assay (LFA) was designed to rapidly diagnose toxoplasmosis in cats. For this purpose, we selected GRA1 protein of T. gondii due to its high antigenicity in diagnostic and vaccine studies. We further analyzed the immunological properties of GRA1 protein using in silico tools. Then, we expressed and purified recombinant GRA1 (rGRA1) protein and used it during the development of LFA to detect toxoplasmosis in serum samples (n = 40) of cats. According to the results, rGRA1 protein has negative GRAVY value, high aliphatic index, alpha helix, random coil and 12 B cell epitopes. The in silico data supported the high antigenic properties of rGRA1 protein and showed that it can be a good antigen candidate for LFA. Among 30 cat positive serum samples, 27 were found positive by the LFA while seronegative sera (n = 10) were negative by the LFA. The preliminary data showed that the LFA has high sensitivity (90 %) and specificity (100 %). When we used high responsive cat sera (i.e. sera that have optical density > 0.5 with ELISA) the sensitivity value reached 100 %. These results showed that rGRA1 protein is a good candidate to develop a LFA for rapid diagnosis of toxoplasmosis in cats.
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Affiliation(s)
- Aysu Değirmenci Döşkaya
- Ege University Faculty of Medicine Department of Parasitology, İzmir, Turkey; Ege University Vaccine Development Application and Research Center, İzmir, Turkey
| | - Hüseyin Can
- Ege University Vaccine Development Application and Research Center, İzmir, Turkey; Ege University Faculty of Science Department of Biology Molecular Biology Section, İzmir, Turkey.
| | - Aytül Gül
- Ege University Graduate School of Natural and Applied Sciences, Department of Bioengineering, İzmir, Turkey; Ege University Faculty of Engineering Department of Bioengineering, İzmir, Turkey
| | - Tuğba Karakavuk
- Ege University Graduate Faculty of Natural and Applied Science Biotechnology Program, İzmir, Turkey
| | - Mervenur Güvendi
- Ege University Faculty of Science Department of Biology Molecular Biology Section, İzmir, Turkey
| | - Muhammet Karakavuk
- Ege University Vaccine Development Application and Research Center, İzmir, Turkey; Ege University Ödemiş Vocational School, İzmir, Turkey
| | - Ceren Gül
- Ege University Graduate Faculty of Natural and Applied Science Biotechnology Program, İzmir, Turkey
| | - Sedef Erkunt Alak
- Ege University Vaccine Development Application and Research Center, İzmir, Turkey
| | - Cemal Ün
- Ege University Vaccine Development Application and Research Center, İzmir, Turkey; Ege University Faculty of Science Department of Biology Molecular Biology Section, İzmir, Turkey
| | - Adnan Yüksel Gürüz
- Ege University Faculty of Medicine Department of Parasitology, İzmir, Turkey; Ege University Vaccine Development Application and Research Center, İzmir, Turkey
| | - Mert Döşkaya
- Ege University Faculty of Medicine Department of Parasitology, İzmir, Turkey; Ege University Vaccine Development Application and Research Center, İzmir, Turkey
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Koçkaya ES, Güvendi M, Köseoğlu AE, Karakavuk M, Değirmenci Döşkaya A, Erkunt Alak S, Döşkaya M, Gürüz AY, Ün C, Can H. Molecular prevalence and genetic diversity of Hepatozoon spp. in stray cats of İzmir, Türkiye. Comp Immunol Microbiol Infect Dis 2023; 101:102060. [PMID: 37678079 DOI: 10.1016/j.cimid.2023.102060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2023] [Revised: 08/28/2023] [Accepted: 09/01/2023] [Indexed: 09/09/2023]
Abstract
Hepatozoon spp. are an apicomplexan protozoan parasites that infect vertebrates including mammals, marsupials, birds, reptiles, and amphibians. Among Hepatozoon species, H. canis and H. felis are causative agents of hepatozoonosis in dogs and cats, respectively and have veterinary importance. This study aimed to determine the prevalence of Hepatozoon spp. in stray cats living in İzmir and investigate genetic diversity among positive samples. To achieve this aim, the prevalence of Hepatozoon spp. 18S rRNA gene was screened by PCR in DNA samples extracted from blood samples of stray cats (n = 1012). Then, Hepatozoon-positive samples were sequenced and the generated data were used for species identification, phylogenetic and haplotype analyses. According to the results, among the samples screened, 2.37 % (24/1012) of them were found to be Hepatozoon-positive, and of these positive samples, 18 (18/24; 75 %) were successfully sequenced. BLAST and phylogenetic analyses revealed that all of these samples were H. felis. Also, phylogenetic analysis showed that H. felis samples were genotype I. Within H. felis samples isolated from cats living in different countries/regions, 9 haplotypes were detected and among these haplotypes, H-1 was found to be prevalent (n = 20 H. felis isolates). In conclusion, this study showed that the prevalence of Hepatozoon spp. was low in stray cats analyzed. Also, H. felis genotype I was predominant in comparison to other Hepatozoon species.
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Affiliation(s)
- Ecem Su Koçkaya
- Ege University Faculty of Science Department of Biology Molecular Biology Section, İzmir, Turkey
| | - Mervenur Güvendi
- Ege University Faculty of Science Department of Biology Molecular Biology Section, İzmir, Turkey
| | - Ahmet Efe Köseoğlu
- Biruni University Faculty of Engineering and Natural Sciences Department of Molecular Biology and Genetics, İstanbul, Turkey
| | - Muhammet Karakavuk
- Ege University Ödemiş Vocational School, İzmir, Turkey; Ege University Vaccine Development Application and Research Center, İzmir, Turkey
| | - Aysu Değirmenci Döşkaya
- Ege University Vaccine Development Application and Research Center, İzmir, Turkey; Ege University Faculty of Medicine Department of Parasitology, İzmir, Turkey
| | - Sedef Erkunt Alak
- Ege University Vaccine Development Application and Research Center, İzmir, Turkey
| | - Mert Döşkaya
- Ege University Vaccine Development Application and Research Center, İzmir, Turkey; Ege University Faculty of Medicine Department of Parasitology, İzmir, Turkey
| | - Adnan Yüksel Gürüz
- Ege University Vaccine Development Application and Research Center, İzmir, Turkey; Ege University Faculty of Medicine Department of Parasitology, İzmir, Turkey
| | - Cemal Ün
- Ege University Faculty of Science Department of Biology Molecular Biology Section, İzmir, Turkey; Ege University Vaccine Development Application and Research Center, İzmir, Turkey
| | - Hüseyin Can
- Ege University Faculty of Science Department of Biology Molecular Biology Section, İzmir, Turkey; Ege University Vaccine Development Application and Research Center, İzmir, Turkey.
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Erkunt Alak S, Can H, Değirmenci Döşkaya A, Sürgeç E, Güvendi M, Ün C, Döşkaya M, Gürüz AY, Karakavuk M. Molecular prevalence of Enterocytozoon bieneusi in stray cats of İzmir, Türkiye. Comp Immunol Microbiol Infect Dis 2023; 100:102037. [PMID: 37556942 DOI: 10.1016/j.cimid.2023.102037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Revised: 07/16/2023] [Accepted: 08/02/2023] [Indexed: 08/11/2023]
Abstract
The phylum Microsporidia contains obligate single celled parasites that can infect many vertebrate hosts including humans. Enterocytozoon bieneusi is considered as the most diagnosed species in humans. E. bieneusi has also been detected in many animals such as cats, dogs and cattle. Among these animals, cats are carriers of type D and IV which are the most common human pathogenic genotypes of E. bieneusi. In Türkiye, the prevalence of E. bieneusi in stray cats is not well known. Therefore, in this study, the molecular prevalence of E. bieneusi in stray cats (n = 339) was determined by Real-Time PCR targeting ribosomal DNA ITS (internal transcribed spacer) region of E. bieneusi. Initially, the analytical sensitivity of Real-Time PCR was determined by a plasmid control and then E. bieneusi DNA was investigated in fecal samples of stray cats. The results showed that the analytical sensitivity of Real-Time PCR targeting ITS region of E. bieneusi was ≤1 copy plasmid/reaction. Analysis of fecal samples revealed that the molecular prevalence of E. bieneusi was 50.15% (170/339). Overall, these results showed that the Real-Time PCR successfully detected E. bieneusi in cat's fecal samples and stray cats can be an important source for transmission of E. bieneusi to humans and other animals.
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Affiliation(s)
- Sedef Erkunt Alak
- Ege University Vaccine Development Application and Research Center, İzmir, Turkiye
| | - Hüseyin Can
- Ege University Vaccine Development Application and Research Center, İzmir, Turkiye; Ege University Faculty of Science, Department of Biology Molecular Biology Section, İzmir, Turkiye
| | - Aysu Değirmenci Döşkaya
- Ege University Vaccine Development Application and Research Center, İzmir, Turkiye; Ege University Faculty of Medicine, Department of Parasitology, İzmir, Turkiye; Ege University Institute of Health Sciences, Department of Vaccine Studies, İzmir, Turkiye
| | - Ecem Sürgeç
- Ege University Faculty of Science, Department of Biology Zoology Section, İzmir, Turkiye
| | - Mervenur Güvendi
- Ege University Faculty of Science, Department of Biology Molecular Biology Section, İzmir, Turkiye
| | - Cemal Ün
- Ege University Vaccine Development Application and Research Center, İzmir, Turkiye; Ege University Faculty of Science, Department of Biology Molecular Biology Section, İzmir, Turkiye
| | - Mert Döşkaya
- Ege University Vaccine Development Application and Research Center, İzmir, Turkiye; Ege University Faculty of Medicine, Department of Parasitology, İzmir, Turkiye; Ege University Institute of Health Sciences, Department of Vaccine Studies, İzmir, Turkiye
| | - Adnan Yüksel Gürüz
- Ege University Vaccine Development Application and Research Center, İzmir, Turkiye; Ege University Faculty of Medicine, Department of Parasitology, İzmir, Turkiye; Ege University Institute of Health Sciences, Department of Vaccine Studies, İzmir, Turkiye
| | - Muhammet Karakavuk
- Ege University Vaccine Development Application and Research Center, İzmir, Turkiye; Ege University Institute of Health Sciences, Department of Vaccine Studies, İzmir, Turkiye; Ege University Ödemiş Vocational School, İzmir, Turkiye.
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9
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Köseoğlu AE, Paltacı S, Can H, Giantsis IA, Güvendi M, Demir S, Döşkaya M, Ün C. Applicability evaluation of mtDNA based molecular identification in mosquito species/subspecies/biotypes collected from Thessaloniki, Greece. Vet Parasitol Reg Stud Reports 2023; 41:100869. [PMID: 37208079 DOI: 10.1016/j.vprsr.2023.100869] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Revised: 03/08/2023] [Accepted: 04/03/2023] [Indexed: 05/21/2023]
Abstract
The genus Culex, containing many described species, plays a role as a vector for diseases of medical and veterinary importance worldwide. Among these species, Culex pipiens is one of the most widespread mosquitoes and is classified into two biological forms (biotypes), named as Culex pipiens pipiens and Culex pipiens molestus. Due to similar morphological structure between these biotypes, morphological identification is inadequate. Thus, molecular methods have been developed and are considered more reliable, some of which are based on analyses of mitochondrial DNA. The aim of the present study was to evaluate the applicability and reliability of mtDNA based molecular identification methodologies. Initially, mosquito specimens (n = 100) collected from Thessaloniki, Greece were morphologically analyzed. Then, mitochondrial cox1 sequencing and PCR-RFLP methods were used to confirm the morphological identification results as well as to discriminate species and subspecies/biotype of Culex pipiens complex. According to morphological identification results, Culex pipiens complex (n = 92), Culex modestus (n = 6) and Culex theileri (n = 2) were detected. Using mtDNA sequencing, all Culex modestus and Culex theileri samples were confirmed whereas 86 of Culex pipiens complex were detected as Culex pipiens but surprisingly the remaining six of them were detected as Culex quinquefasciatus. Among Culex pipiens specimens, PCR-RFLP detected that frequency of Culex pipiens pipiens (85%; 85/100) was very high compared to Culex pipiens molestus (1%, 1/100). In conclusion, this study shows the necessity of use of molecular methods beside morphological methods for especially specimens detected as Culex pipiens. Also, it was shown that mtDNA PCR-RFLP methodology represents a well-established alternative for Culex biotypes identification.
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Affiliation(s)
- Ahmet Efe Köseoğlu
- Biruni University Faculty of Engineering and Natural Sciences, Department of Molecular Biology and Genetics, Istanbul, Turkey
| | - Satı Paltacı
- Ege University Faculty of Science, Department of Biology, Molecular Biology Section, İzmir, Turkey
| | - Hüseyin Can
- Ege University Faculty of Science, Department of Biology, Molecular Biology Section, İzmir, Turkey.
| | - Ioannis A Giantsis
- University of Western Macedonia Faculty of Agricultural Science, Department of Animal Science, Greece
| | - Mervenur Güvendi
- Ege University Faculty of Science, Department of Biology, Molecular Biology Section, İzmir, Turkey
| | - Samiye Demir
- Ege University Faculty of Science, Department of Biology, Zoology Section, İzmir, Turkey
| | - Mert Döşkaya
- Ege University Faculty of Medicine, Department of Parasitology, İzmir, Turkey
| | - Cemal Ün
- Ege University Faculty of Science, Department of Biology, Molecular Biology Section, İzmir, Turkey
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10
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Güvendi M, Can H, Köseoğlu AE, Erkunt Alak S, Kandemir Ç, Taşkın T, Sürgeç E, Demir S, Değirmenci Döşkaya A, Karakavuk M, Gül A, Döşkaya M, Gürüz AY, Ün C. Investigation of the genetic diversity and flea-borne pathogens in Ctenocephalides felis samples collected from goats in İzmir and Şanlıurfa provinces of Turkey. Comp Immunol Microbiol Infect Dis 2022; 90-91:101896. [DOI: 10.1016/j.cimid.2022.101896] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2022] [Revised: 09/28/2022] [Accepted: 10/05/2022] [Indexed: 11/30/2022]
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11
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Köseoğlu AE, Can H, Güvendi M, Karakavuk M, Manyatsi P, Erkunt Alak S, Değirmenci Döşkaya A, Gül A, Döşkaya M, Gürüz AY, Ün C. Molecular prevalence and genetic diversity of Bartonella spp. in stray cats of İzmir, Turkey. Parasit Vectors 2022; 15:305. [PMID: 36038877 PMCID: PMC9422166 DOI: 10.1186/s13071-022-05431-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Accepted: 08/04/2022] [Indexed: 12/13/2022] Open
Abstract
Background Bartonella spp. are vector-borne pathogens that cause zoonotic infections in humans. One of the most well-known of these is cat-scratch disease caused by Bartonella henselae and Bartonella clarridgeiae, with cats being the major reservoir for these two bacteria. Izmir, Turkey is home to many stray cats, but their potential role as a reservoir for the transmission of Bartonella to humans has not been investigated yet. Therefore, the aim of this study was to investigate the prevalence of Bartonella species and their genetic diversity in stray cats living in Izmir. Methods Molecular prevalence of Bartonella spp. in stray cats (n = 1012) was investigated using a PCR method targeting the 16S-23S internal transcribed spacer gene (ITS), species identification was performed by sequencing and genetic diversity was evaluated by haplotype analysis. Results Analysis of the DNA extracted from 1012 blood samples collected from stray cats revealed that 122 samples were Bartonella-positive, which is a molecular prevalence of 12.05% (122/1012; 95% confidence interval [CI] 10.1–14.2%). Among the Bartonella-positive specimens, 100 (100/122; 81.96%) were successfully sequenced, and B. henselae (45/100; 45%), B. clarridgeiae (29/100; 29%) and Bartonella koehlerae (26/100; 26%) were identified by BLAST and phylogenetic analyses. High genetic diversity was detected in B. clarridgeiae with 19 haplotypes, followed by B. henselae (14 haplotypes) and B. koehlerae (8 haplotypes). Conclusions This comprehensive study analyzing a large number of samples collected from stray cats showed that Bartonella species are an important source of infection to humans living in Izmir. In addition, high genetic diversity was detected within each Bartonella species. Supplementary Information The online version contains supplementary material available at 10.1186/s13071-022-05431-3.
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Affiliation(s)
- Ahmet Efe Köseoğlu
- Department of Molecular Biology and Genetics, Faculty of Engineering and Natural Sciences, Biruni University, Istanbul, Turkey.,Department of Biology Molecular Biology Section, Faculty of Science, Ege University, Izmir, Turkey
| | - Hüseyin Can
- Department of Biology Molecular Biology Section, Faculty of Science, Ege University, Izmir, Turkey.
| | - Mervenur Güvendi
- Department of Biology Molecular Biology Section, Faculty of Science, Ege University, Izmir, Turkey
| | | | - Pumla Manyatsi
- Department of Biology Molecular Biology Section, Faculty of Science, Ege University, Izmir, Turkey
| | - Sedef Erkunt Alak
- Department of Biology Molecular Biology Section, Faculty of Science, Ege University, Izmir, Turkey
| | | | - Aytül Gül
- Department of Bioengineering, Faculty of Engineering, Ege University, Izmir, Turkey
| | - Mert Döşkaya
- Department of Parasitology, Faculty of Medicine, Ege University, Izmir, Turkey
| | - Adnan Yüksel Gürüz
- Department of Parasitology, Faculty of Medicine, Ege University, Izmir, Turkey
| | - Cemal Ün
- Department of Biology Molecular Biology Section, Faculty of Science, Ege University, Izmir, Turkey
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12
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Öncü Öner T, Karakavuk M, Değirmenci Döşkaya A, Güvendi M, Gül A, Köseoğlu AE, Erkunt Alak S, Gürüz AY, Ün C, Döşkaya M, Can H. Molecular prevalence of Blastocystis sp. and subtype diversity in fecal samples collected from cattle in dairy farms in Turkey. Comp Immunol Microbiol Infect Dis 2022; 87:101850. [PMID: 35751914 DOI: 10.1016/j.cimid.2022.101850] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Revised: 06/15/2022] [Accepted: 06/17/2022] [Indexed: 10/18/2022]
Abstract
Close contact with infected animals is one of the main risk factors for zoonotic transmission of enteric protozoan parasite Blastocystis and thus, several animal species are being screened for the detection of the zoonotic subtypes. For this purpose, 22 fecal samples were collected from healthy cattle aged > 2 months and 39 fecal samples were also collected from cattle (aged <2 months) which are treated with TMP-SMX due to diarrhea. Later, Blastocystis sp. and subtypes were investigated by a PCR targeting the SSU rRNA gene and subsequently by sequencing. Among the 22 fecal samples collected from healthy cattle, Blastocystis was detected in 12 of them with a prevalence rate of 54.5 %. Among Blastocystis-positive samples, five different subtypes (ST3, ST5, ST10, ST12, and ST13) were detected. The predominant subtype was ST10 (allele 152) with a prevalence rate of 50 % (6/12). In the other group treated with TMP-SMX due to diarrhea, Blastocystis was detected in only one (2.56 %;1/39) fecal sample and its subtype was ST1 (allele 2). High prevalence of Blastocystis as well as predominance of ST10 (allele 152) were detected in healthy cattle. The identification of zoonotic ST1, ST3, ST5 and ST12 subtypes among the detected subtypes with a high prevalence (46.1 %; 6/13) showed the importance of cattle as a source for transmission of Blastocystis to humans. It was observed that the efficiency of TMP-SMX on the clearance of Blastocystis in cattle was very strong. Moreover, to our knowledge, this is the first study detecting Blastocystis ST13 subtype in the cattle.
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Affiliation(s)
- Tülay Öncü Öner
- Manisa Celal Bayar University Faculty of Engineering Department of Bioengineering, Manisa, Turkey
| | - Muhammet Karakavuk
- Ege University Odemis Vocational School, İzmir, Turkey; Ege University Vaccine Development Application and Research Center, İzmir, Turkey
| | - Aysu Değirmenci Döşkaya
- Ege University Vaccine Development Application and Research Center, İzmir, Turkey; Ege University Faculty of Medicine Department of Parasitology, İzmir, Turkey
| | - Mervenur Güvendi
- Ege University Faculty of Science Department of Biology Molecular Biology Section, İzmir, Turkey
| | - Aytül Gül
- Ege University Faculty of Engineering Department of Bioengineering, İzmir, Turkey
| | - Ahmet Efe Köseoğlu
- Biruni University, Faculty of Engineering and Natural Sciences, Department of Molecular Biology and Genetics, İstanbul, Turkey
| | - Sedef Erkunt Alak
- Ege University Vaccine Development Application and Research Center, İzmir, Turkey; Ege University Faculty of Science Department of Biology Molecular Biology Section, İzmir, Turkey
| | - Adnan Yüksel Gürüz
- Ege University Vaccine Development Application and Research Center, İzmir, Turkey; Ege University Faculty of Medicine Department of Parasitology, İzmir, Turkey
| | - Cemal Ün
- Ege University Vaccine Development Application and Research Center, İzmir, Turkey; Ege University Faculty of Science Department of Biology Molecular Biology Section, İzmir, Turkey
| | - Mert Döşkaya
- Ege University Vaccine Development Application and Research Center, İzmir, Turkey; Ege University Faculty of Medicine Department of Parasitology, İzmir, Turkey
| | - Hüseyin Can
- Ege University Vaccine Development Application and Research Center, İzmir, Turkey; Ege University Faculty of Science Department of Biology Molecular Biology Section, İzmir, Turkey.
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13
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Köseoğlu AE, Can H, Karakavuk M, Güvendi M, Değirmenci Döşkaya A, Manyatsi PB, Döşkaya M, Gürüz AY, Ün C. Molecular prevalence and subtyping of Cryptosporidium spp. in fecal samples collected from stray cats in İzmir, Turkey. BMC Vet Res 2022; 18:89. [PMID: 35255909 PMCID: PMC8898748 DOI: 10.1186/s12917-022-03190-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2021] [Accepted: 02/28/2022] [Indexed: 12/02/2022] Open
Abstract
Background Cryptosporidium spp. are obligate intracellular apicomplexan parasites transmitted to humans and other animals by contaminated water, food, or direct contact. They mainly cause gastrointestinal symptoms, although subclinical infections are also common. Cats are primarily infected by host-adapted Cryptosporidium felis while C. parvum and C. muris have also been detected in some cases. In this study, the molecular prevalence of Cryptosporidium spp. was investigated by screening 399 fecal samples collected from stray cats using nested PCR targeting the 18S rRNA gene for the first time in Turkey. Additionally, Cryptosporidium PCR-positive samples were genotyped by nested PCR- restriction fragment length polymorphism (RFLP), and subsequently, amplicons of 18S SSU rRNA were sequenced. They were further subtyped by amplification and sequencing of the gp60 gene. Results Among fecal samples screened, 12 of them (3%) were found to be Cryptosporidium-positive, and according to RFLP and sequencing of 18S rRNA gene, all positive samples were identified as C. felis. Subtyping analyses at the gp60 gene showed that C. felis isolates belonged to the XIXa subtype family, which are closely related to human subtypes of the parasite. Conclusions The results of this study are important in terms of indicating the potential role of stray cats for transmission of Cryptosporidium spp. to humans or other animals. Also, the presence of XIXa, which is the dominant subtype family of C. felis in cats and humans was shown for the first time in stray cats of İzmir, Turkey.
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Affiliation(s)
- Ahmet Efe Köseoğlu
- Faculty of Science Department of Biology Molecular Biology Section, Ege University, İzmir, Turkey
| | - Hüseyin Can
- Faculty of Science Department of Biology Molecular Biology Section, Ege University, İzmir, Turkey. .,Ege University Vaccine Development Application and Research Center, İzmir, Turkey.
| | - Muhammet Karakavuk
- Ege University Vaccine Development Application and Research Center, İzmir, Turkey.,Ege University Ödemiş Technical Training College, İzmir, Turkey
| | - Mervenur Güvendi
- Faculty of Science Department of Biology Molecular Biology Section, Ege University, İzmir, Turkey
| | - Aysu Değirmenci Döşkaya
- Ege University Vaccine Development Application and Research Center, İzmir, Turkey.,Faculty of Medicine Department of Parasitology, Ege University, İzmir, Turkey
| | - Pumla Bhekiwe Manyatsi
- Faculty of Science Department of Biology Molecular Biology Section, Ege University, İzmir, Turkey
| | - Mert Döşkaya
- Ege University Vaccine Development Application and Research Center, İzmir, Turkey.,Faculty of Medicine Department of Parasitology, Ege University, İzmir, Turkey
| | - Adnan Yüksel Gürüz
- Ege University Vaccine Development Application and Research Center, İzmir, Turkey.,Faculty of Medicine Department of Parasitology, Ege University, İzmir, Turkey
| | - Cemal Ün
- Faculty of Science Department of Biology Molecular Biology Section, Ege University, İzmir, Turkey.,Ege University Vaccine Development Application and Research Center, İzmir, Turkey
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14
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Can H, Aksoy Gökmen A, Döşkaya M, Erkunt Alak S, Değirmenci Döşkaya A, Karakavuk M, Köseoğlu AE, Karakavuk T, Gül C, Güvendi M, Gül A, Gürüz AY, Kaya S, Mercier A, Ün C. Development of a new serotyping ELISA for Toxoplasma gondii type II, type III and Africa 1 lineages using in silico peptide discovery methods, well categorized feline and human outbreak serum samples. BMC Infect Dis 2022; 22:110. [PMID: 35100997 PMCID: PMC8802539 DOI: 10.1186/s12879-022-07088-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2021] [Accepted: 01/25/2022] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Discovery of new Toxoplasma gondii serotyping epitopes is important due to reports showing the influence of genotype on the severity of toxoplasmosis. In Turkey, genotypes belonging to type II, type III and Africa 1 lineages were mainly detected. The present study focused on to find out epitopes with high discriminative capacity to serotype these genotypes using well characterized strains isolated from Turkey. METHODS To meet this objective, GRA6 and GRA7 genes were sequenced from strains belonging to the type II, III and Africa 1 lineages, and B cell epitopes inside these sequences were predicted by Bcepred and additional docking analysis was performed with B cell receptor. Based on these analyses, 22 peptides harboring lineage specific epitopes were synthesized. Then, the serotyping potency of these peptides was tested using peptide ELISA and well categorized serum samples collected from stray cats infected with genotypes of the different lineages type II (n:9), III (n:1) and Africa 1 (n:1). As a result of peptide-ELISA, a serotyping schema was constructed with peptides that show high discriminative capacity and this assay was validated by sera collected from humans after an outbreak (n:30) and mother/newborn pair sera (n:3). Later, the validated serotyping schema was used to serotype a larger group of human (n:38) and cat (n:24) sera. RESULTS Among 22 peptides, GRA6II/c, GRA7III/d, and GRA6 Africa 1/b epitopes have shown discriminative capacity. During the validation of peptide-ELISA, the serotype of toxoplasmosis outbreak and mother/newborn cases were detected to be serotype II. Moreover, the analyses in a larger group showed that serotype II was prevalent in humans and stray cats. CONCLUSIONS Overall, the results showed that the serotyping schema could be successfully used to serotype T. gondii infections caused by type II, III and Africa 1 genotype.
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Affiliation(s)
- Hüseyin Can
- Molecular Biology Section, Department of Biology, Faculty of Science, Ege University, İzmir, Turkey.
- Vaccine Development, Application and Research Center, Ege University, İzmir, Turkey.
| | - Ayşegül Aksoy Gökmen
- Department of Microbiology, Faculty of Medicine, İzmir Katip Çelebi University, İzmir, Turkey
| | - Mert Döşkaya
- Vaccine Development, Application and Research Center, Ege University, İzmir, Turkey
- Department of Parasitology, Faculty of Medicine, Ege University, İzmir, Turkey
| | - Sedef Erkunt Alak
- Molecular Biology Section, Department of Biology, Faculty of Science, Ege University, İzmir, Turkey
| | - Aysu Değirmenci Döşkaya
- Vaccine Development, Application and Research Center, Ege University, İzmir, Turkey
- Department of Parasitology, Faculty of Medicine, Ege University, İzmir, Turkey
| | - Muhammet Karakavuk
- Vaccine Development, Application and Research Center, Ege University, İzmir, Turkey
- Ege University Ödemiş Technical Training College, İzmir, Turkey
| | - Ahmet Efe Köseoğlu
- Molecular Biology Section, Department of Biology, Faculty of Science, Ege University, İzmir, Turkey
| | - Tuğba Karakavuk
- Graduate Faculty of Natural and Applied Science Biotechnology Program, Ege University, İzmir, Turkey
| | - Ceren Gül
- Graduate Faculty of Natural and Applied Science Biotechnology Program, Ege University, İzmir, Turkey
| | - Mervenur Güvendi
- Molecular Biology Section, Department of Biology, Faculty of Science, Ege University, İzmir, Turkey
| | - Aytül Gül
- Department of Bioengineering, Faculty of Engineering, Ege University, İzmir, Turkey
| | - Adnan Yüksel Gürüz
- Vaccine Development, Application and Research Center, Ege University, İzmir, Turkey
- Department of Parasitology, Faculty of Medicine, Ege University, İzmir, Turkey
| | - Selçuk Kaya
- Department of Microbiology, Faculty of Medicine, İzmir Katip Çelebi University, İzmir, Turkey
| | - Aurélien Mercier
- Centre National de Référence (CNR) Toxoplasmose/Toxoplasma Biological Resource Center (BRC), Centre Hospitalier-Universitaire Dupuytren, Limoges, France
- INSERM, Université Limoges, CHU Limoges, IRD, U1094 Neuroépidémiologie Tropicale, Institut d'Epidémiologie et de Neurologie Tropicale, GEIST, Limoges, France
| | - Cemal Ün
- Molecular Biology Section, Department of Biology, Faculty of Science, Ege University, İzmir, Turkey
- Vaccine Development, Application and Research Center, Ege University, İzmir, Turkey
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15
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Köseoğlu AE, Can H, Güvendi M, Erkunt Alak S, Kandemir Ç, Taşkın T, Demir S, Akgül G, Değirmenci Döşkaya A, Karakavuk M, Döşkaya M, Gürüz AY, Ün C. Molecular investigation of bacterial and protozoal pathogens in ticks collected from different hosts in Turkey. Parasit Vectors 2021; 14:270. [PMID: 34016174 PMCID: PMC8138928 DOI: 10.1186/s13071-021-04779-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Accepted: 05/08/2021] [Indexed: 02/04/2023] Open
Abstract
Background The emergence of tick-borne disease is increasing because of the effects of the temperature rise driven by global warming. In Turkey, 19 pathogens transmitted by ticks to humans and animals have been reported. Based on this, this study aimed to investigate tick-borne pathogens including Hepatozoon spp., Theileria spp., Babesia spp., Anaplasma spp., Borrelia spp., and Bartonella spp. in tick samples (n = 110) collected from different hosts (dogs, cats, cattle, goats, sheep, and turtles) by molecular methods. Methods To meet this objective, ticks were identified morphologically at the genus level by microscopy; after DNA isolation, each tick sample was identified at the species level using the molecular method. Involved pathogens were then investigated by PCR method. Results Seven different tick species were identified including Rhipicephalus sanguineus, R. turanicus, R. bursa, Hyalomma marginatum, H. anatolicum, H. aegyptium, and Haemaphysalis erinacei. Among the analyzed ticks, Hepatozoon spp., Theileria spp., Babesia spp., and Anaplasma spp. were detected at rates of 6.36%, 16.3%, 1.81%, and 6.36%, respectively while Borrelia spp. and Bartonella spp. were not detected. Hepatozoon spp. was detected in R. sanguineus ticks while Theileria spp., Babesia spp., and Anaplasma spp. were detected in R. turanicus and H. marginatum. According to the results of sequence analyses applied for pathogen positive samples, Hepatozoon canis, Theileria ovis, Babesia caballi, and Anaplasma ovis were identified. Conclusion Theileria ovis and Anaplasma ovis were detected for the first time to our knowledge in H. marginatum and R. turanicus collected from Turkey, respectively. Also, B. caballi was detected for the first time to our knowledge in ticks in Turkey. ![]()
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Affiliation(s)
- Ahmet Efe Köseoğlu
- Molecular Biology Section, Department of Biology, Faculty of Science, Ege University, Izmir, Turkey
| | - Hüseyin Can
- Molecular Biology Section, Department of Biology, Faculty of Science, Ege University, Izmir, Turkey.
| | - Mervenur Güvendi
- Molecular Biology Section, Department of Biology, Faculty of Science, Ege University, Izmir, Turkey
| | - Sedef Erkunt Alak
- Molecular Biology Section, Department of Biology, Faculty of Science, Ege University, Izmir, Turkey
| | - Çağrı Kandemir
- Department of Animal Science, Faculty of Agriculture, Ege University, Izmir, Turkey
| | - Turğay Taşkın
- Department of Animal Science, Faculty of Agriculture, Ege University, Izmir, Turkey
| | - Samiye Demir
- Zoology Section, Department of Biology, Faculty of Science, Ege University, Izmir, Turkey
| | - Gülşah Akgül
- Department of Internal Medicine, Faculty of Veterinary Medicine, Siirt University, Siirt, Turkey
| | | | | | - Mert Döşkaya
- Department of Parasitology, Faculty of Medicine, Ege University, Izmir, Turkey
| | - Adnan Yüksel Gürüz
- Department of Parasitology, Faculty of Medicine, Ege University, Izmir, Turkey
| | - Cemal Ün
- Molecular Biology Section, Department of Biology, Faculty of Science, Ege University, Izmir, Turkey
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16
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Can H, Köseoğlu AE, Erkunt Alak S, Güvendi M, Döşkaya M, Karakavuk M, Gürüz AY, Ün C. In silico discovery of antigenic proteins and epitopes of SARS-CoV-2 for the development of a vaccine or a diagnostic approach for COVID-19. Sci Rep 2020; 10:22387. [PMID: 33372181 PMCID: PMC7769971 DOI: 10.1038/s41598-020-79645-9] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2020] [Accepted: 12/10/2020] [Indexed: 12/11/2022] Open
Abstract
In the genome of SARS-CoV-2, the 5′-terminus encodes a polyprotein, which is further cleaved into 15 non-structural proteins whereas the 3′ terminus encodes four structural proteins and eight accessory proteins. Among these 27 proteins, the present study aimed to discover likely antigenic proteins and epitopes to be used for the development of a vaccine or serodiagnostic assay using an in silico approach. For this purpose, after the full genome analysis of SARS-CoV-2 Wuhan isolate and variant proteins that are detected frequently, surface proteins including spike, envelope, and membrane proteins as well as proteins with signal peptide were determined as probable vaccine candidates whereas the remaining were considered as possible antigens to be used during the development of serodiagnostic assays. According to results obtained, among 27 proteins, 26 of them were predicted as probable antigen. In 26 proteins, spike protein was selected as the best vaccine candidate because of having a signal peptide, negative GRAVY value, one transmembrane helix, moderate aliphatic index, a big molecular weight, a long-estimated half-life, beta wrap motifs as well as having stable, soluble and non-allergic features. In addition, orf7a, orf8, and nsp-10 proteins with signal peptide were considered as potential vaccine candidates. Nucleocapsid protein and a highly antigenic GGDGKMKD epitope were identified as ideal antigens to be used in the development of serodiagnostic assays. Moreover, considering MHC-I alleles, highly antigenic KLNDLCFTNV and ITLCFTLKRK epitopes can be used to develop an epitope-based peptide vaccine.
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Affiliation(s)
- Hüseyin Can
- Department of Biology Molecular Biology Section, Faculty of Science, Ege University, Bornova, İzmir, Turkey
| | - Ahmet Efe Köseoğlu
- Department of Biology Molecular Biology Section, Faculty of Science, Ege University, Bornova, İzmir, Turkey
| | - Sedef Erkunt Alak
- Department of Biology Molecular Biology Section, Faculty of Science, Ege University, Bornova, İzmir, Turkey
| | - Mervenur Güvendi
- Department of Biology Molecular Biology Section, Faculty of Science, Ege University, Bornova, İzmir, Turkey
| | - Mert Döşkaya
- Department of Parasitology, Faculty of Medicine, Ege University, Bornova, İzmir, Turkey
| | | | - Adnan Yüksel Gürüz
- Department of Parasitology, Faculty of Medicine, Ege University, Bornova, İzmir, Turkey
| | - Cemal Ün
- Department of Biology Molecular Biology Section, Faculty of Science, Ege University, Bornova, İzmir, Turkey.
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