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Igic B, Farber R, Alfaro-Ramirez M, Nelson MA, Taylor LK. The impact of cross-jurisdictional patient flows on ascertainment of hospitalisations and cardiac procedures for ST-segment-elevation myocardial infarction in an Australian population. Int J Popul Data Sci 2023; 8:1751. [PMID: 37636833 PMCID: PMC10450362 DOI: 10.23889/ijpds.v8i1.1751] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023] Open
Abstract
Introduction The patient journey for residents of New South Wales (NSW) Australia with ST-elevation myocardial infarction (STEMI) often involves transfer between hospitals and these can include stays in hospitals in other jurisdictions. Objective To estimate the change in enumeration of STEMI hospitalisations and time to subsequent cardiac procedures for NSW residents using cross-jurisdictional linkage of administrative health data. Methods Records for NSW residents aged 20 years and over admitted to hospitals in NSW and four adjacent jurisdictions (Australian Capital Territory, Queensland, South Australia, and Victoria) between 1 July 2013 and 30 June 2018 with a principal diagnosis of STEMI were linked with records of the Australian Government Medicare Benefits Schedule (MBS). The number of STEMI hospitalisations, and rates of angiography, percutaneous coronary intervention and coronary artery bypass graft were compared for residents of different local health districts within NSW with and without inclusion of cross-jurisdictional data. Results Inclusion of cross-jurisdictional hospital and MBS data increased the enumeration of STEMI hospitalisations for NSW residents by 8% (from 15,420 to 16,659) and procedure rates from 85.6% to 88.2%. For NSW residents who lived adjacent to a jurisdictional border, hospitalisation counts increased by up to 210% and procedure rates by up to 70 percentage points. Conclusions Cross-jurisdictional linked hospital data is essential to understand patient journeys of NSW residents who live in border areas and to evaluate adherence to treatment guidelines for STEMI. MBS data are useful where hospital data are not available and for procedures that may be conducted in out-patient settings.
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Affiliation(s)
- Branislav Igic
- Centre for Epidemiology and Evidence, NSW Ministry of Health, 1 Reserve Road, St Leonards, New South Wales 2065 Australia
| | - Rachel Farber
- Centre for Epidemiology and Evidence, NSW Ministry of Health, 1 Reserve Road, St Leonards, New South Wales 2065 Australia
| | - Maria Alfaro-Ramirez
- Centre for Epidemiology and Evidence, NSW Ministry of Health, 1 Reserve Road, St Leonards, New South Wales 2065 Australia
| | - Michael A Nelson
- Centre for Epidemiology and Evidence, NSW Ministry of Health, 1 Reserve Road, St Leonards, New South Wales 2065 Australia
| | - Lee K Taylor
- Centre for Epidemiology and Evidence, NSW Ministry of Health, 1 Reserve Road, St Leonards, New South Wales 2065 Australia
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Nelson MA. The timing and aggressiveness of early government response to COVID-19: Political systems, societal culture, and more. World Dev 2021; 146:105550. [PMID: 36569409 PMCID: PMC9758386 DOI: 10.1016/j.worlddev.2021.105550] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 05/08/2021] [Indexed: 05/31/2023]
Abstract
Factors that drove the early timing and strictness of government responses to COVID-19 for over 150 countries are examined using the daily Coronavirus Government Response Tracker data provided by the University of Oxford. Results show that authoritarian regimes tended to have an initial policy response somewhat weaker relative to democratic regimes at the early stages of the pandemic but pursed more aggressive containment policies over the latter part of the six-month period analyzed. Unitary regimes tended to have stronger policy measures in place early on relative to federalist states but relaxed these restrictions sooner. Countries with greater freedom (political rights and civil liberties) and those that spend less on public health also exhibited slower early policy responses, but caught up within three to four months after the pandemic reached their country. There is no evidence that women leaders, viewed as a whole, put in place more aggressive polices to combat the virus relative to their male counterparts. Nor is there any evidence that either island nations or countries that experienced the start of the pandemic later in the global wave pursued different policies that other nations. Policy implications are discussed as the how nations should prepare for future pandemics.
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Affiliation(s)
- Michael A Nelson
- Department of Economics, University of Akron, Akron, OH 44325-1908, USA
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Abstract
This paper adds some formal research to the success of ongoing efforts to combat the COVID-19 pandemic by examining the drivers of the administration and delivery efficiency of coronavirus vaccines. For this purpose, we use data from the 50 US states and place the formal analysis in the context of socio-economic drivers of vaccinations. Results show that state-economic prosperity and rural population aid vaccine administration and delivery efficiency. Delivery efficiency improves in states with more nursing homes per capita, in states with more COVID-19 deaths, and with more health workers. A subset of health workers, including physicians and nurses, did not significantly impact administration or efficiency. On the other hand, vaccination efficiency was lower in states with a centralized public health agency. States with a larger share of the elderly population and those with Democrats as governors were no different from others with regard to vaccinations. Robustness checks are performed using vaccination data from a more recent period. Finally, a state’s legacy of corrupt activity, across two different time dimensions, is broadly consistent with the greasing effects of corruption. Some policy implications based on the evolving data are discussed.
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Affiliation(s)
- Rajeev K. Goel
- Department of Economics, Illinois State University, Normal, IL 61790-4200 USA
- Kiel Institute for the World Economy, Kiel, Germany
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Goel RK, Nelson MA, Goel VY. COVID-19 vaccine rollout-scale and speed carry different implications for corruption. J Policy Model 2021; 43:503-520. [PMID: 33967361 PMCID: PMC8095025 DOI: 10.1016/j.jpolmod.2021.04.003] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2021] [Revised: 03/22/2021] [Accepted: 04/03/2021] [Indexed: 05/25/2023]
Abstract
The sanctioning of different coronavirus vaccines (with some approved by regulators for public delivery, and others in the pipeline) has met with relief by many sections of the public and the government. However, partly due to the damages associated with the pandemic and the ensuing euphoria over vaccines' arrival, some of the challenges are mostly being ignored or are not recognized. This paper identifies some pitfalls and drawbacks in vaccine delivery. We argue that the somewhat unique tension between the speed of vaccine delivery and its scale can create opportunities for corrupt behavior that are often at odds with effective means to check abuse. While data on instances of abuse will emerge over time, it is useful to point out different avenues of abuse so that some preventive government actions can be undertaken. Specifically, we argue that the potential for out of turn delivery of vaccines and the stockpiling by unauthorized agents creates incentives for corruption, with the public or bureaucrats initiating corrupt transactions. An understanding of the potential avenues for corruption should guide the formulation of appropriate corruption-control policies and similar challenges that will be faced by policy makers in addressing future pandemics.
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Affiliation(s)
- Rajeev K Goel
- Illinois State University, USA
- Kiel Institute for the World Economy, Germany
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Boggs ASP, Kilpatrick LE, Burdette CQ, Tevis DS, Fultz ZA, Nelson MA, Jarrett JM, Kemp JV, Singh RJ, Grebe SKG, Wise SA, Kassim BL, Long SE. Development of a pregnancy-specific reference material for thyroid biomarkers, vitamin D, and nutritional trace elements in serum. Clin Chem Lab Med 2021; 59:671-679. [PMID: 33098630 PMCID: PMC9972198 DOI: 10.1515/cclm-2020-0977] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2020] [Accepted: 10/06/2020] [Indexed: 11/15/2022]
Abstract
OBJECTIVES Matrix differences among serum samples from non-pregnant and pregnant patients could bias measurements. Standard Reference Material 1949, Frozen Human Prenatal Serum, was developed to provide a quality assurance material for the measurement of hormones and nutritional elements throughout pregnancy. METHODS Serum from non-pregnant women and women in each trimester were bottled into four levels based on pregnancy status and trimester. Liquid chromatography tandem mass spectrometry (LC-MS/MS) methods were developed and applied to the measurement of thyroid hormones, vitamin D metabolites, and vitamin D-binding protein (VDBP). Copper, selenium, and zinc measurements were conducted by inductively coupled plasma dynamic reaction cell MS. Thyroid stimulating hormone (TSH), thyroglobulin (Tg), and thyroglobulin antibody concentrations were analyzed using immunoassays and LC-MS/MS (Tg only). RESULTS Certified values for thyroxine and triiodothyronine, reference values for vitamin D metabolites, VDBP, selenium, copper, and zinc, and information values for reverse triiodothyronine, TSH, Tg, and Tg antibodies were assigned. Significant differences in serum concentrations were evident for all analytes across the four levels (p≤0.003). TSH measurements were significantly different (p<0.0001) among research-only immunoassays. Tg concentrations were elevated in research-only immunoassays vs. Federal Drug Administration-approved automated immunoassay and LC-MS/MS. Presence of Tg antibodies increased differences between automated immunoassay and LC-MS/MS. CONCLUSIONS The analyte concentrations' changes consistent with the literature and the demonstration of matrix interferences in immunoassay Tg measurements indicate the functionality of this material by providing a relevant matrix-matched reference material for the different stages of pregnancy.
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Affiliation(s)
- Ashley S. P. Boggs
- Corresponding author: Ashley S. P. Boggs, PhD, Research Biologist, National Institute of Standards and Technology, 331 Fort Johnson Rd, Charleston, SC 29412, USA, Phone: 843 460 9789, Fax: 843 998 6940,
| | | | | | - Denise S. Tevis
- Division of Laboratory Sciences, National Center for Environmental Health, Centers for Disease Control and Prevention, Atlanta, GA, USA
| | - Zachary A. Fultz
- Division of Laboratory Sciences, National Center for Environmental Health, Centers for Disease Control and Prevention, Atlanta, GA, USA
| | - Michael A. Nelson
- National Institute of Standards and Technology, Gaithersburg, MD, USA
| | - Jeffery M. Jarrett
- Division of Laboratory Sciences, National Center for Environmental Health, Centers for Disease Control and Prevention, Atlanta, GA, USA
| | - Jennifer V. Kemp
- Division of Clinical Biochemistry and Immunology, Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA
| | - Ravinder J. Singh
- Division of Clinical Biochemistry and Immunology, Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA
| | - Stefan K. G. Grebe
- Division of Clinical Biochemistry and Immunology, Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA; Division of Endocrinology, Department of Medicine, Mayo Clinic, Rochester, MN, USA
| | - Stephen A. Wise
- National Institute of Standards and Technology, Gaithersburg, MD, USA; National Institutes of Health, Office of Dietary Supplements, Bethesda, MD, USA
| | - Brittany L. Kassim
- National Institute of Standards and Technology, Hollings Marine Laboratory, Charleston, SC, USA
| | - Stephen E. Long
- National Institute of Standards and Technology, Hollings Marine Laboratory, Charleston, SC, USA
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Nelson MA, Lim K, Boyd J, Cordery D, Went A, Meharg D, Jackson-Pulver L, Winch S, Taylor LK. Accuracy of reporting of Aboriginality on administrative health data collections using linked data in NSW, Australia. BMC Med Res Methodol 2020; 20:267. [PMID: 33115422 PMCID: PMC7594479 DOI: 10.1186/s12874-020-01152-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2020] [Accepted: 10/16/2020] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Aboriginal people are under-reported on administrative health data in Australia. Various approaches have been used or proposed to improve reporting of Aboriginal people using linked records. This cross-sectional study used self-reported Aboriginality from the NSW Patient Survey Program (PSP) as a reference standard to assess the accuracy of reporting of Aboriginal people on NSW Admitted Patient (APDC) and Emergency Department Data Collections (EDDC), and compare the accuracy of selected approaches to enhance reporting Aboriginality using linked data. METHODS Ten PSP surveys were linked to five administrative health data collections, including APDC, EDDC, perinatal, and birth and death registration records. Accuracy of reporting of Aboriginality was assessed using sensitivity, specificity, and positive and negative predictive values (PPVs and NPVs) and F score for the EDDC and APDC as baseline and four enhancement approaches using linked records: "Most recent linked record", "Ever reported as Aboriginal", and two approaches using a weight of evidence, "Enhanced Reporting of Aboriginality (ERA) algorithm" and "Multi-stage median (MSM)". RESULTS There was substantial under-reporting of Aboriginality on APDC and EDDC records (sensitivities 84 and 77% respectively) with PPVs of 95% on both data collections. Overall, specificities and NPVs were above 98%. Of people who were reported as Aboriginal on the PSP, 16% were not reported as Aboriginal on any of their linked records. Record linkage approaches generally increased sensitivity, accompanied by decrease in PPV with little change in overall F score for the APDC and an increase in F score for the EDDC. The "ERA algorithm" and "MSM" approaches provided the best overall accuracy. CONCLUSIONS Weight of evidence approaches are preferred when record linkage is used to improve reporting of Aboriginality on administrative health data collections. However, as a substantial number of Aboriginal people are not reported as Aboriginal on any of their linked records, improvements in reporting are incomplete and should be taken into account when interpreting results of any analyses. Enhancement of reporting of Aboriginality using record linkage should not replace efforts to improve recording of Aboriginal people at the point of data collection and addressing barriers to self-identification for Aboriginal people.
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Affiliation(s)
- Michael A. Nelson
- Centre for Epidemiology and Evidence, NSW Ministry of Health, Sydney, NSW Australia
| | - Kim Lim
- Centre for Epidemiology and Evidence, NSW Ministry of Health, Sydney, NSW Australia
| | - Jason Boyd
- Bureau of Health Information, Chatswood, NSW Australia
| | - Damien Cordery
- System Information and Analytics, NSW Ministry of Health, Sydney, NSW Australia
| | - Allan Went
- System Information and Analytics, NSW Ministry of Health, Sydney, NSW Australia
| | - David Meharg
- Faculty of Medicine and Health, Sydney School of Health Sciences and the Poche Centre for Indigenous Health, University of Sydney, Sydney, NSW Australia
| | - Lisa Jackson-Pulver
- Deputy Vice-Chancellor, Indigenous Strategy and Services, University of Sydney, Sydney, Australia
| | - Scott Winch
- Scott Winch, World Vision, Sydney, Australia
| | - Lee K. Taylor
- Centre for Epidemiology and Evidence, NSW Ministry of Health, Sydney, NSW Australia
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Taylor LK, Nelson MA, Gale M, Trevena J, Brieger DB, Winch S, Cretikos MA, Newman LA, Phung HN, Faddy SC, Kelly PM, Chant K. Cardiac procedures in ST-segment-elevation myocardial infarction - the influence of age, geography and Aboriginality. BMC Cardiovasc Disord 2020; 20:224. [PMID: 32408860 PMCID: PMC7227061 DOI: 10.1186/s12872-020-01487-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2018] [Accepted: 04/14/2020] [Indexed: 11/10/2022] Open
Abstract
Background Timely restoration of bloodflow acute ST-segment elevation myocardial infarction (STEMI) reduces myocardial damage and improves prognosis. The objective of this study was describe the association of demographic factors with hospitalisation rates for STEMI and time to angiography, Percutaneous Coronary Intervention (PCI) and Coronary Artery Bypass Graft (CABG) in New South Wales (NSW) and the Australian Capital Territory (ACT), Australia. Methods This was an observational cohort study using linked population health data. We used linked records of NSW and the ACT hospitalisations and the Australian Government Medicare Benefits Schedule (MBS) for persons aged 35 and over hospitalised with STEMI in the period 1 July 2010 to 30 June 2014. Survival analysis was used to determine the time between STEMI admission and angiography, PCI and CABG, with a competing risk of death without cardiac procedure. Results Of 13,117 STEMI hospitalisations, 71% were among males; 55% were 65-plus years; 64% lived in major cities, and 2.6% were Aboriginal people. STEMI hospitalisation occurred at a younger age in males than females. Angiography and PCI rates decreased with age: angiography 69% vs 42% and PCI 60% vs 34% on day 0 for ages 35-44 and 75-plus respectively. Lower angiography and PCI rates and higher CABG rates were observed outside major cities. Aboriginal people with STEMI were younger and more likely to live outside a major city. Angiography, PCI and CABG rates were similar for Aboriginal and non-Aboriginal people of the same age and remoteness area. Conclusions There is a need to improve access to definitive revascularisation for STEMI among appropriately selected older patients and in regional areas. Aboriginal people with STEMI, as a population, are disproportionately affected by access to definitive revascularisation outside major cities. Improving access to timely definitive revascularisation in regional areas may assist in closing the gap in cardiovascular outcomes between Aboriginal and non-Aboriginal people.
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Affiliation(s)
- Lee K Taylor
- Centre for Epidemiology and Evidence, NSW Ministry of Health, Sydney, Australia
| | - Michael A Nelson
- Centre for Epidemiology and Evidence, NSW Ministry of Health, Sydney, Australia.
| | - Marianne Gale
- Office of the Chief Health Officer, NSW Ministry of Health, Sydney, Australia
| | - Judy Trevena
- Centre for Epidemiology and Evidence, NSW Ministry of Health, Sydney, Australia
| | | | - Scott Winch
- Illawarra Local Aboriginal Lands Council, Wollongong, Australia
| | | | - Leah A Newman
- Epidemiology Section, Population Health Protection and Prevention, ACT Health, Canberra, Australia
| | - Hai N Phung
- Epidemiology Section, Population Health Protection and Prevention, ACT Health, Canberra, Australia
| | | | - Paul M Kelly
- ACT Chief Health Officer & Deputy Director-General, Population Health Protection and Prevention, ACT Health, Canberra, Australia
| | - Kerry Chant
- Chief Health Officer, NSW Ministry of Health, Sydney, Australia
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Goel RK, Nelson MA. How do firms use innovations to hedge against economic and political uncertainty? Evidence from a large sample of nations. J Technol Transf 2020. [DOI: 10.1007/s10961-019-09773-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Nelson MA, Quakenbush LT, Taras BD, Ice Seal C. Subsistence harvest of ringed, bearded, spotted, and ribbon seals in Alaska is sustainable. ENDANGER SPECIES RES 2019. [DOI: 10.3354/esr00973] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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Lippa KA, Duewer DL, Nelson MA, Davies SR, Mackay LG. The role of the CCQM OAWG in providing SI traceable calibrators for organic chemical measurements. Accredit Qual Assur 2019; 24:10.1007/s00769-019-01407-6. [PMID: 38487299 PMCID: PMC10938631 DOI: 10.1007/s00769-019-01407-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2019] [Accepted: 09/16/2019] [Indexed: 03/17/2024]
Abstract
Metrological traceability for organic chemical measurements is a documented unbroken chain of calibrations with stated uncertainties that ideally link the measurement result for a sample to a primary calibrator in appropriate SI units (e.g., mass fraction). A comprehensive chemical purity determination of the organic calibrator is required to ensure a true assessment of this result. We explore the evolution of chemical purity capabilities across metrology institute members of the Consultative Committee for Amount of Substance: Metrology in Chemistry and Biology's Organic Analysis Working Group (OAWG). The OAWG work program has promoted the development of robust measurement capabilities, using indirect "mass balance" determinations via rigorous assessment of impurities and direct determination using quantitative nuclear magnetic resonance spectroscopy methods. A combination of mass balance and qNMR has been shown to provide a best practice approach. Awareness of the importance of the traceability of organic calibrators continues to grow across stakeholder groups, particularly in key areas such as clinical chemistry where activities related to the Joint Committee for Traceability in Laboratory Medicine have raised the profile of traceable calibrators.
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Affiliation(s)
- Katrice A. Lippa
- National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD 20899-8392, USA
| | - David L. Duewer
- National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD 20899-8392, USA
| | - Michael A. Nelson
- National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD 20899-8392, USA
| | - Stephen R. Davies
- National Measurement Institute, Australia, 105 Delhi Road, North Ryde, NSW 2113, Australia
| | - Lindsey G. Mackay
- National Measurement Institute, Australia, 105 Delhi Road, North Ryde, NSW 2113, Australia
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Nelson MA, Waters JF, Toman B, Lang BE, Rück A, Breitruck K, Obkircher M, Windust A, Lippa KA. A New Realization of SI for Organic Chemical Measurement: NIST PS1 Primary Standard for Quantitative NMR (Benzoic Acid). Anal Chem 2018; 90:10510-10517. [PMID: 30058803 DOI: 10.1021/acs.analchem.8b02575] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Metrological traceability to common references supports the comparability of chemical measurement results produced by different analysts, at various times, and at separate places. Ideally, these references are realizations of base units of the International System of Units (SI). ISO/IEC 17025 (Clause 6.5) states that traceability of measurement results is a necessary attribute of analytical laboratory competence, and as such, has become compulsory in many industries, especially clinical diagnostics and healthcare. Historically, claims of traceability for organic chemical measurements have relied on calibration chains anchored on unique reference materials with linkage to the SI that is tenuous at best. A first-of-its-kind National Institute of Standards and Technology (NIST) reference material, ultrapure and extensively characterized PS1 Benzoic Acid Primary Standard for quantitative NMR (qNMR), serves as a definitive, primary reference (calibrant) that assuredly links the qNMR spectroscopy technique to SI units. As qNMR itself is a favorable method for accurate, direct characterization of chemical reference materials, PS1 is a standard for developing other traceable standards and is intended to establish traceability for the measurement of thousands of organic chemical species. NIST PS1 will play a critical role in directly promoting accuracy and worldwide comparability of measurement results produced by the chemical measurement community, supporting the soundness of clinical diagnostics, food safety and labeling, forensic investigation, drug development, biomedical research, and chemical manufacturing. Confidence in this link to the SI was established through (i) unambiguous identification of chemical structure; (ii) determinations of isotopic composition and molecular weight; (iii) evaluation of the respective molecular amount by multiple primary measurement procedures, including qNMR and coulometry; and (iv) rigorous evaluation of measurement uncertainty using state-of-the-art statistical methods and measurement models.
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Affiliation(s)
- M A Nelson
- National Institute of Standards and Technology , US Department of Commerce, Gaithersburg , Maryland 20899 , United States
| | - J F Waters
- National Institute of Standards and Technology , US Department of Commerce, Gaithersburg , Maryland 20899 , United States
| | - B Toman
- National Institute of Standards and Technology , US Department of Commerce, Gaithersburg , Maryland 20899 , United States
| | - B E Lang
- National Institute of Standards and Technology , US Department of Commerce, Gaithersburg , Maryland 20899 , United States
| | - A Rück
- Sigma-Aldrich Production GmbH , 9471 Buchs , Switzerland
| | - K Breitruck
- Sigma-Aldrich Production GmbH , 9471 Buchs , Switzerland
| | - M Obkircher
- Sigma-Aldrich Production GmbH , 9471 Buchs , Switzerland
| | - A Windust
- Measurement Science and Standards , National Research Council Canada , Ottawa , ON K1A DR6 , Canada
| | - K A Lippa
- National Institute of Standards and Technology , US Department of Commerce, Gaithersburg , Maryland 20899 , United States
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Nelson MA, Quakenbush LT, Mahoney BA, Taras BD, Wooller MJ. Fifty years of Cook Inlet beluga whale feeding ecology from isotopes in bone and teeth. ENDANGER SPECIES RES 2018. [DOI: 10.3354/esr00890] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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Thornton LA, Burchell RK, Burton SE, Lopez-Villalobos N, Pereira D, MacEwan I, Fang C, Hatmodjo AC, Nelson MA, Grinberg A, Velathanthiri N, Gal A. The Effect of Urine Concentration and pH on the Growth of Escherichia Coli in Canine Urine In Vitro. J Vet Intern Med 2018; 32:752-756. [PMID: 29469957 PMCID: PMC5866962 DOI: 10.1111/jvim.15045] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2017] [Revised: 11/11/2017] [Accepted: 12/19/2017] [Indexed: 11/28/2022] Open
Abstract
Background Lower urinary tract infections are common in dogs, and Escherichia coli is the most common bacterial pathogen isolated. The literature has conflicting evidence regarding the inhibitory effects of urine concentration and pH on E. coli growth. Hypothesis/Objectives To determine the effect of different pH and urine concentrations on E. coli growth in vitro. Animals Voided urine samples from 10 apparently healthy spayed female dogs were used. Methods A matrix of 9 urine specific gravity (USG; 1.010, 1.020, and 1.030) and pH (5.5, 7.0, and 8.5) combinations was prepared by diluting and titrating filtered voided urine samples. Three E. coli isolates were obtained from urine of female dogs with signs of lower urinary tract infection and cultured at different urine pH and USG combinations in wells of a microtiter plate. The number of E. coli colony‐forming units (CFU) per mL of urine was calculated after aerobic incubation of the urine at 37°C for 18 hours, and statistically compared. Results Significant differences were identified in the mean log CFU/mL among different combinations of pH and USG. The lowest log CFU/mL were observed in alkaline concentrated urine (pH 8.5 and USG 1.030). Conclusions and Clinical Importance Escherichia coli in vitro growth was higher in neutral to acidic and diluted urine compared to alkaline and concentrated urine. The impact of non‐alkalizing diluting diets on the incidence of E. coli lower urinary tract infections should be further explored.
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Affiliation(s)
- L A Thornton
- School of Veterinary Sciences, Massey University, Palmerston North, Manawatu-Wanganui, New Zealand
| | - R K Burchell
- School of Veterinary Sciences, Massey University, Palmerston North, Manawatu-Wanganui, New Zealand
| | - S E Burton
- School of Veterinary Sciences, Massey University, Palmerston North, Manawatu-Wanganui, New Zealand
| | - N Lopez-Villalobos
- School of Veterinary Sciences, Massey University, Palmerston North, Manawatu-Wanganui, New Zealand
| | - D Pereira
- School of Veterinary Sciences, Massey University, Palmerston North, Manawatu-Wanganui, New Zealand
| | - I MacEwan
- School of Veterinary Sciences, Massey University, Palmerston North, Manawatu-Wanganui, New Zealand
| | - C Fang
- School of Veterinary Sciences, Massey University, Palmerston North, Manawatu-Wanganui, New Zealand
| | - A C Hatmodjo
- School of Veterinary Sciences, Massey University, Palmerston North, Manawatu-Wanganui, New Zealand
| | - M A Nelson
- School of Veterinary Sciences, Massey University, Palmerston North, Manawatu-Wanganui, New Zealand
| | - A Grinberg
- School of Veterinary Sciences, Massey University, Palmerston North, Manawatu-Wanganui, New Zealand
| | - N Velathanthiri
- School of Veterinary Sciences, Massey University, Palmerston North, Manawatu-Wanganui, New Zealand
| | - A Gal
- School of Veterinary Sciences, Massey University, Palmerston North, Manawatu-Wanganui, New Zealand
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Tai SSC, Nelson MA, Bedner M, Lang BE, Phinney KW, Sander LC, Yen JH, Betz JM, Sempos CT, Wise SA. Development of Standard Reference Material (SRM) 2973 Vitamin D Metabolites in Frozen Human Serum (High Level). J AOAC Int 2017; 100:1294-1303. [PMID: 28917261 DOI: 10.5740/jaoacint.17-0182] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The National Institute of Standards and Technology (NIST), in collaboration with the National Institutes of Health Office of Dietary Supplements and the Vitamin D Standardization Program, has recently issued a new serum-matrix Standard Reference Material (SRM): 2973 Vitamin D Metabolites in Frozen Human Serum (High Level). SRM 2973 was designed to provide a serum material with a total 25-hydroxyvitamin D [25(OH)D] concentration near 100 nmol/L to complement the existing serum-based SRMs with values assigned for total 25(OH)D between 20 and 80 nmol/L. Values were assigned for 25-hydroxyvitamin D2 [25(OH)D2], 25-hydroxyvitamin D3 [25(OH)D3], 3-epi-25(OH)D3, and total 25(OH)D [the sum of 25(OH)D2 + 25(OH)D3] using the NIST isotope dilution LC with tandem MS (MS/MS) reference measurement procedure (RMP) and related methods. SRM 2973 has a certified value of 98.4 ± 2.1 nmol/L for 25(OH)D3 and reference values of 1.59 ± 0.05 nmol/L for 25(OH)D2 and 5.23 ± 0.20 nmol/L for 3-epi-25(OH)D3. In addition, a candidate RMP for 24R,25-dihydroxyvitamin D3 [24R,25(OH)2D3] based on LC-MS/MS was used to assign values to SRM 2973 and the existing SRM 972a Vitamin D Metabolites in Frozen Human Serum. Reference values for 24R,25(OH)2D3 were assigned to SRM 2973 (7.51 ± 0.26 nmol/L) and the four levels of SRM 972a: Level 1 (6.38 ± 0.23 nmol/L), Level 2 (3.39 ± 0.12 nmol/L), Level 3 (3.88 ± 0.013 nmol/L), and Level 4 (6.32 ± 0.22 nmol/L). The development of SRM 2973 [with a higher concentration of 25(OH)D3] and the addition of values for 24R,25(OH)2D3 assigned to both SRM 972a and SRM 2973 provide laboratories involved in vitamin D measurements with improved QA tools.
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Affiliation(s)
- Susan S-C Tai
- National Institute of Standards and Technology, Chemical Sciences Division, Gaithersburg, MD 20899
| | - Michael A Nelson
- National Institute of Standards and Technology, Chemical Sciences Division, Gaithersburg, MD 20899
| | - Mary Bedner
- National Institute of Standards and Technology, Chemical Sciences Division, Gaithersburg, MD 20899
| | - Brian E Lang
- National Institute of Standards and Technology, Chemical Sciences Division, Gaithersburg, MD 20899
| | - Karen W Phinney
- National Institute of Standards and Technology, Chemical Sciences Division, Gaithersburg, MD 20899
| | - Lane C Sander
- National Institute of Standards and Technology, Chemical Sciences Division, Gaithersburg, MD 20899
| | - James H Yen
- National Institute of Standards and Technology, Statistical Engineering Division, Gaithersburg, MD 20899
| | - Joseph M Betz
- National Institutes of Health, Office of Dietary Supplements, Bethesda, MD 20892
| | - Christopher T Sempos
- National Institutes of Health, Office of Dietary Supplements, Bethesda, MD 20892
| | - Stephen A Wise
- National Institute of Standards and Technology, Chemical Sciences Division, Gaithersburg, MD 20899
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Wise SA, Tai SSC, Burdette CQ, Camara JE, Bedner M, Lippa KA, Nelson MA, Nalin F, Phinney KW, Sander LC, Betz JM, Sempos CT, Coates PM. Role of the National Institute of Standards and Technology (NIST) in Support of the Vitamin D Initiative of the National Institutes of Health, Office of Dietary Supplements. J AOAC Int 2017; 100:1260-1276. [PMID: 28863788 DOI: 10.5740/jaoacint.17-0305] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Since 2005, the National Institute of Standards and Technology (NIST) has collaborated with the National Institutes of Health (NIH), Office of Dietary Supplements (ODS) to improve the quality of measurements related to human nutritional markers of vitamin D status. In support of the NIH-ODS Vitamin D Initiative, including the Vitamin D Standardization Program (VDSP), NIST efforts have focused on (1) development of validated analytical methods, including reference measurement procedures (RMPs); (2) development of Standard Reference Materials (SRMs); (3) value assignment of critical study samples using NIST RMPs; and (4) development and coordination of laboratory measurement QA programs. As a result of this collaboration, NIST has developed RMPs for 25-hydroxyvitamin D2 [25(OH)D2], 25(OH)D3, and 24R,25-dihydroxyvitamin D3 [24R,25(OH)2D3]; disseminated serum-based SRMs with values assigned for 25(OH)D2, 25(OH)D3, 3-epi-25(OH)D3, and 24R,25(OH)2D3; assigned values for critical samples for VDSP studies, including an extensive interlaboratory comparison and reference material commutability study; provided an accuracy basis for the Vitamin D External Quality Assurance Scheme; coordinated the first accuracy-based measurement QA program for the determination of 25(OH)D2, 25(OH)D3, and 3-epi-25(OH)D3 in human serum/plasma; and developed methods and SRMs for the determination of vitamin D and 25(OH)D in food and supplement matrix SRMs. The details of these activities and their benefit and impact to the NIH-ODS Vitamin D Initiative are described.
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Affiliation(s)
- Stephen A Wise
- National Institute of Standards and Technology, Chemical Sciences Division, Gaithersburg, MD 20899
| | - Susan S-C Tai
- National Institute of Standards and Technology, Chemical Sciences Division, Gaithersburg, MD 20899
| | - Carolyn Q Burdette
- National Institute of Standards and Technology, Chemical Sciences Division, Gaithersburg, MD 20899
| | - Johanna E Camara
- National Institute of Standards and Technology, Chemical Sciences Division, Gaithersburg, MD 20899
| | - Mary Bedner
- National Institute of Standards and Technology, Chemical Sciences Division, Gaithersburg, MD 20899
| | - Katrice A Lippa
- National Institute of Standards and Technology, Chemical Sciences Division, Gaithersburg, MD 20899
| | - Michael A Nelson
- National Institute of Standards and Technology, Chemical Sciences Division, Gaithersburg, MD 20899
| | - Federica Nalin
- National Institute of Standards and Technology, Chemical Sciences Division, Gaithersburg, MD 20899
| | - Karen W Phinney
- National Institute of Standards and Technology, Chemical Sciences Division, Gaithersburg, MD 20899
| | - Lane C Sander
- National Institute of Standards and Technology, Chemical Sciences Division, Gaithersburg, MD 20899
| | - Joseph M Betz
- National Institutes of Health, Office of Dietary Supplements, Bethesda, MD 20892
| | - Christopher T Sempos
- National Institutes of Health, Office of Dietary Supplements, Bethesda, MD 20892
| | - Paul M Coates
- National Institutes of Health, Office of Dietary Supplements, Bethesda, MD 20892
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Wise SA, Tai SSC, Nelson MA, Burdette CQ, Camara JE, Hoofnagle AN, Laha TJ, Carter GD, Jones J, Williams EL, Barclay ZJ, Jones G, Kaufmann M, Binkley N, Kapoor A, Ziegler T, Cashman KD, Dowling KG, Sempos CT. Interlaboratory Comparison for the Determination of 24,25-Dihydroxyvitamin D₃ in Human Serum Using Liquid Chromatography with Tandem Mass Spectrometry. J AOAC Int 2017; 100:1308-1317. [PMID: 28741469 DOI: 10.5740/jaoacint.17-0183] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Six laboratories associated with the Vitamin D Standardization Program (VDSP) participated in an interlaboratory comparison of LC with tandem MS (MS/MS) methods for the determination of 24,25-dihydroxyvitamin D3 [24,25(OH)2D3] in human serum. The laboratories analyzed two different serum-based Standard Reference Materials (SRMs) intended for use in the determination of 25-hydroxyvitamin D and 30 samples from the Vitamin D External Quality Assessment Scheme (DEQAS). All laboratory methods for 24,25(OH)2D3 were based on isotope dilution LC-MS/MS; three of the methods used derivatization of the vitamin D metabolites before LC-MS/MS. Laboratory results were compared to the National Institute of Standards and Technology (NIST) results, which were obtained using their newly developed candidate reference measurement procedure for 24,25(OH)2D3. Laboratory results for the SRM samples varied in comparability to the NIST results, with one laboratory in excellent agreement (-1.6% mean bias), three laboratories at 10-15% mean bias, and the remaining laboratory at 36% mean bias. For the 30 DEQAS samples, the mean bias for the five laboratories ranged from 6 to 15%; however, the SD of the bias ranged from 8 to 29%. As a result of this intercomparison study, one laboratory discovered and corrected a method calculation error and another laboratory modified and improved their LC-MS/MS method.
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Affiliation(s)
- Stephen A Wise
- National Institute of Standards and Technology, Chemical Sciences Division, Gaithersburg, MD 20899
| | - Susan S-C Tai
- National Institute of Standards and Technology, Chemical Sciences Division, Gaithersburg, MD 20899
| | - Michael A Nelson
- National Institute of Standards and Technology, Chemical Sciences Division, Gaithersburg, MD 20899
| | - Carolyn Q Burdette
- National Institute of Standards and Technology, Chemical Sciences Division, Gaithersburg, MD 20899
| | - Johanna E Camara
- National Institute of Standards and Technology, Chemical Sciences Division, Gaithersburg, MD 20899
| | - Andrew N Hoofnagle
- University of Washington, Department of Laboratory Medicine, Seattle, WA 98195-7110
| | - Thomas J Laha
- University of Washington, Department of Laboratory Medicine, Seattle, WA 98195-7110
| | - Graham D Carter
- Imperial College Healthcare National Health Service Trust, Charing Cross Hospital, Department of Biochemistry, London, United Kingdom
| | - Julia Jones
- Imperial College Healthcare National Health Service Trust, Charing Cross Hospital, Department of Biochemistry, London, United Kingdom
| | - Emma L Williams
- Imperial College Healthcare National Health Service Trust, Charing Cross Hospital, Department of Biochemistry, London, United Kingdom
| | - Zoe J Barclay
- Imperial College Healthcare National Health Service Trust, Charing Cross Hospital, Department of Biochemistry, London, United Kingdom
| | | | | | - Neil Binkley
- University of Wisconsin-Madison, Madison, WI 53706
| | - Amita Kapoor
- University of Wisconsin-Madison, Madison, WI 53706
| | - Toni Ziegler
- University of Wisconsin-Madison, Madison, WI 53706
| | - Kevin D Cashman
- University College Cork, School of Food and Nutritional Sciences, Cork Centre for Vitamin D and Nutrition Research, Cork, Ireland
| | - Kirsten G Dowling
- University College Cork, School of Food and Nutritional Sciences, Cork Centre for Vitamin D and Nutrition Research, Cork, Ireland
| | - Christopher T Sempos
- National Institutes of Health, Office of Dietary Supplements, Bethesda, MD 20892
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Toman B, Nelson MA, Bedner M. Rigorous evaluation of chemical measurement uncertainty: Liquid chromatographic analysis methods using detector response factor calibration. Metrologia 2017; 54:S16. [PMID: 28740320 PMCID: PMC5520676 DOI: 10.1088/1681-7575/aa6404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Chemical measurement methods are designed to promote accurate knowledge of a measurand or system. As such, these methods often allow elicitation of latent sources of variability and correlation in experimental data. They typically implement measurement equations that support quantification of effects associated with calibration standards and other known or observed parametric variables. Additionally, multiple samples and calibrants are usually analyzed to assess accuracy of the measurement procedure and repeatability by the analyst. Thus, a realistic assessment of uncertainty for most chemical measurement methods is not purely bottom-up (based on the measurement equation) or top-down (based on the experimental design), but inherently contains elements of both. Confidence in results must be rigorously evaluated for the sources of variability in all of the bottom-up and top-down elements. This type of analysis presents unique challenges due to various statistical correlations among the outputs of measurement equations. One approach is to use a Bayesian hierarchical (BH) model which is intrinsically rigorous, thus making it a straightforward method for use with complex experimental designs, particularly when correlations among data are numerous and difficult to elucidate or explicitly quantify. In simpler cases, careful analysis using GUM Supplement 1 (MC) methods augmented with random effects meta analysis yields similar results to a full BH model analysis. In this article we describe both approaches to rigorous uncertainty evaluation using as examples measurements of 25-hydroxyvitamin D3 in solution reference materials via liquid chromatography with UV absorbance detection (LC-UV) and liquid chromatography mass spectrometric detection using isotope dilution (LC-IDMS).
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Affiliation(s)
- Blaza Toman
- National Institute of Standards and Technology, Gaithersburg, MD, USA
| | - Michael A Nelson
- National Institute of Standards and Technology, Gaithersburg, MD, USA
| | - Mary Bedner
- National Institute of Standards and Technology, Gaithersburg, MD, USA
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Toman B, Nelson MA, Lippa KA. Chemical purity using quantitative 1H-nuclear magnetic resonance: a hierarchical Bayesian approach for traceable calibrations. Metrologia 2016; 53:1193-1203. [PMID: 28670006 PMCID: PMC5486237 DOI: 10.1088/0026-1394/53/5/1193] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Chemical purity assessment using quantitative 1H-nuclear magnetic resonance spectroscopy is a method based on ratio references of mass and signal intensity of the analyte species to that of chemical standards of known purity. As such, it is an example of a calculation using a known measurement equation with multiple inputs. Though multiple samples are often analyzed during purity evaluations in order to assess measurement repeatability, the uncertainty evaluation must also account for contributions from inputs to the measurement equation. Furthermore, there may be other uncertainty components inherent in the experimental design, such as independent implementation of multiple calibration standards. As such, the uncertainty evaluation is not purely bottom up (based on the measurement equation) or top down (based on the experimental design), but inherently contains elements of both. This hybrid form of uncertainty analysis is readily implemented with Bayesian statistical analysis. In this article we describe this type of analysis in detail and illustrate it using data from an evaluation of chemical purity and its uncertainty for a folic acid material.
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Affiliation(s)
- Blaza Toman
- National Institute of Standards and Technology, US Department of Commerce, Gaithersburg, MD, USA
| | - Michael A Nelson
- National Institute of Standards and Technology, US Department of Commerce, Gaithersburg, MD, USA
| | - Katrice A Lippa
- National Institute of Standards and Technology, US Department of Commerce, Gaithersburg, MD, USA
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Tai SSC, Nelson MA. Candidate Reference Measurement Procedure for the Determination of (24R),25-Dihydroxyvitamin D3 in Human Serum Using Isotope-Dilution Liquid Chromatography-Tandem Mass Spectrometry. Anal Chem 2015; 87:7964-70. [PMID: 26171884 DOI: 10.1021/acs.analchem.5b01861] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The two major forms of vitamin D, vitamin D3 and vitamin D2, are metabolized in the liver through hydroxylation to 25-hydroxyvitamin D species, and then further hydroxylated in the kidney to various dihydroxyvitamin D species. (24R),25-Dihydroxyvitamin D3 ((24R),25(OH)2D3) is a major catabolite of 25-hydroxyvitamin D metabolism and is an important vitamin D metabolite used as a catabolism marker and indicator of kidney disease. The National Institute of Standards and Technology has recently developed a reference measurement procedure for the determination of (24R),25(OH)2D3 in human serum using isotope-dilution LC-MS/MS. The (24R),25(OH)2D3 and added deuterated labeled internal standard (24R),25(OH)2D3-d6 were extracted from serum matrix using liquid-liquid extraction prior to LC-MS/MS analysis. Chromatographic separation was performed using a fused-core C18 column. Atmospheric pressure chemical ionization in the positive ion mode and multiple reaction monitoring were used for LC-MS/MS. The accuracy of the measurement of (24R),25(OH)2D3 was evaluated by recovery studies of measuring (24R),25(OH)2D3 in gravimetrically prepared spiked samples of human serum with known (24R),25(OH)2D3 levels. The recoveries of the added (24R),25(OH)2D3 averaged 99.0% (0.8% SD), and the extraction efficiencies averaged 95% (2% SD). Excellent repeatability was demonstrated with CVs of ∼1%. The limit of quantitation at a signal-to-noise ratio of ∼10 was 0.2 ng/g. Potential isomeric interferences from other endogenous species and from impurity components of the reference standard were investigated. LC baseline resolution of (24R),25(OH)2D3 from these isomers was achieved within 35 min. This method was used for value assignment of (24R),25(OH)2D3 in Standard Reference Materials of Vitamin D Metabolites in Human Serum, which can serve as an accuracy base for routine methods used in clinical laboratories.
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Affiliation(s)
- Susan S-C Tai
- Chemical Sciences Division, National Institute of Standards and Technology, Gaithersburg, Maryland 20899, United States
| | - Michael A Nelson
- Chemical Sciences Division, National Institute of Standards and Technology, Gaithersburg, Maryland 20899, United States
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Le Prell CG, Ojano-Dirain C, Rudnick EW, Nelson MA, DeRemer SJ, Prieskorn DM, Miller JM. Assessment of nutrient supplement to reduce gentamicin-induced ototoxicity. J Assoc Res Otolaryngol 2014; 15:375-93. [PMID: 24590390 PMCID: PMC4010593 DOI: 10.1007/s10162-014-0448-x] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2013] [Accepted: 01/28/2014] [Indexed: 12/29/2022] Open
Abstract
Gentamicin is an aminoglycoside antibiotic used to treat gram-negative bacterial infections. Treatment with this antibiotic carries the potential for adverse side effects, including ototoxicity and nephrotoxicity. Ototoxic effects are at least in part a consequence of oxidative stress, and various antioxidants have been used to attenuate gentamicin-induced hair cell death and hearing loss. Here, a combination of nutrients previously shown to reduce oxidative stress in the hair cells and attenuate hearing loss after other insults was evaluated for potential protection against gentamicin-induced ototoxicity. Guinea pigs were maintained on a nutritionally complete standard laboratory animal diet or a diet supplemented with β-carotene, vitamins C and E, and magnesium. Three diets with iterative increases in nutrient levels were screened; the final diet selected for study use was one that produced statistically reliable increases in plasma levels of vitamins C and E and magnesium. In two separate studies, significant decreases in gentamicin-induced hearing loss at frequencies including 12 kHz and below were observed, with less benefit at the higher frequencies. Consistent with the functional protection, robust protection of both the inner and outer hair cell populations was observed, with protection largely in the upper half of the cochlea. Protection was independently assessed in two different laboratories, using two different strains of guinea pigs. Additional in vitro tests did not reveal any decrease in antimicrobial activity with nutrient additives. Currently, there are no FDA-approved treatments for the prevention of gentamicin-induced ototoxicity. The current data provide a rationale for continued investigations regarding translation to human patients.
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Affiliation(s)
- Rajeev K. Goel
- a Department of Economics , Illinois State University , Normal , IL 61790 , USA
| | - Michael A. Nelson
- b Department of Economics , University of Akron , Akron , OH 44325 , USA
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Abstract
OBJECTIVE To examine cost and mortality among stage IV colorectal cancer (CRC) patients treated with 5-fluorouracil (5FU)/leucovorin/oxaliplatin (FOLFOX) or 5FU/leucovorin/irinotecan (FOLFIRI). METHODS Adult CRC patients newly treated with FOLFOX or FOLFIRI were identified from a large database using medical and pharmacy claims for services delivered January 1, 2002 through December 31, 2005. Cancer stage for a subset of patients was abstracted from medical records. Outcomes were annualized costs calculated for 4 years of observation, and deaths as recorded by the National Death Index. Cost was analyzed using generalized linear modeling; mortality was modeled using Cox proportional hazards analysis. RESULTS Unadjusted annualized median and mean costs were $134,401 and $152,213, respectively, for the FOLFOX cohort (n = 41) and $103,150 and $107,994 for the FOLFIRI cohort (n = 86). Death occurred among five (12%) FOLFOX and 42 (53%) FOLFIRI patients. Adjusted analysis revealed no significant difference in cost between cohorts, even after adjusting for reduced irinotecan costs due to generic availability. Incremental costs associated with one additional life saved per year were only $1,236 higher for patients treated with FOLFOX compared with FOLFIRI. Cox analysis revealed a significant survival advantage for FOLFOX over FOLFIRI (HR = 5.2; 95% CI: 1.7-15.8). CONCLUSIONS A significant survival benefit was seen for CRC patients receiving FOLFOX versus FOLFIRI; multivariate analysis revealed no significant cost differences. However, the small sample size may have resulted in lack of adequate power to detect a difference between cohorts. There may be factors influencing mortality that were not included in the multivariate modeling.
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Hanlon KE, Lozano-Ondoua AN, Chandramouli A, Largent-Milnes TM, Umaretiya PJ, Stapleton DJ, Nelson MA, Mantyh PW, Vanderah TW. Abstract P1-11-23: Cannabinoid Receptor 2 Compounds in the Attenuation of Breast Cancer Cell Proliferation: Mechanisms of Action. Cancer Res 2010. [DOI: 10.1158/0008-5472.sabcs10-p1-11-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Abstract
Cannabinoids have been well established as mediators of tumor cell proliferation in several cancer models. The activity of cannabinoid receptor 1 (CB1) agonists as well as cannabinoid receptor 2 (CB2) agonists have been extensively studied over the last decade, though their mechanisms of action have yet to be defined in the context of attenuating tumor proliferation. CB1 is abundant in the central nervous system with a low level of expression in the periphery, while CB2 exists primarily on cells of the immune system. Due to the lack of neuronal expression of CB2 receptors, compounds acting at CB2 receptors do not produce the psychotropic effects associated with CB1 receptor compounds. Although CB1 and CB2 compounds have yielded similar antiproliferative results in some tumor cells in vitro, CB2 receptors are markedly upregulated in many tumor cell lines for unknown reasons. Therefore, we focused on compounds selective for the CB2 receptor, including the CB2 selective agonists JWH-015 and AM1241. We show here that CB2 agonists and antagonists alike attenuate the proliferation of mouse and human breast cancer cells in a concentration dependent manner. CB2 agonist induced breast cancer anti-proliferation is not blocked by pretreatment with pertussis toxin, the CB1 cannabinoid receptor antagonist SR141716, or the transient receptor potential cation channel subfamily V member 1 (TRPV1) antagonist capsazepine. The CB1 and CB2 receptors are classified as G-protein coupled receptors (GPCRs) that are generally linked to Gai or Gaq. Agonists and antagonists of G protein coupled receptors are typically defined based on their Ga mediated effect on intracellular cAMP levels. This method of classification is not entirely effective: it ignores the possibility of differential effects on alternative kinases and the bg subunit activity. The anti-proliferative activity of both JWH-015 and SR144528 may be explained by alternative receptor coupling pathways, changes in constitutive activity, or activity at a separate receptor. Here, we show a dose and time dependent decrease in phosphorylated ERK in cells treated with either JWH-015 (CB2 agonist) or SR144528 (CB2 antagonist). Together, these data along with the absence of a pertussis toxin effect suggest that the CB2 compounds are acting in a non-Gai coupled manner, and are attenuating a pro-survival pathway. Further studies are necessary to identify the binding partner responsible for the antiproliferative effects of CB2 compounds. We advance the idea that CB2 receptors on breast cancer cells constitutively activate the MAP/ERK pro-survival pathway and that by preventing constituitive activity of the CB2 receptor, CB2 compounds downregulate phosphorylation of the MAPK/ERK pathway to promote apoptosis of breast cancer cells.
Citation Information: Cancer Res 2010;70(24 Suppl):Abstract nr P1-11-23.
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Abstract
Carotid artery stenting (CAS) is a widely accepted alternative for patients at high risk for carotid endarterectomy (CEA). However, the role, indications, and evidence for many pharmacologic agents that are used adjunctively in the periprocedural setting have not been established. Several drugs are commonly used before, during, and after CAS, but their uses have not been standardized. Large prospective cohort studies with good validity or randomized trials are needed to demonstrate efficacy, predict outcome, and determine the optimal use of these medications in patients undergoing CAS to improve patient care and obtain optimal outcomes. Several conclusions can be made: (1) dual-antiplatelet therapy (aspirin and clopidogrel) is commonly used for CAS; (2) the most commonly used regimen is aspirin 325 mg and clopidogrel 75 mg per day, but the optimal time of therapy is unknown; and (3) the dose and regimen of other agents used for CAS are not established.
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Affiliation(s)
- David Gortler
- Departments of *Pharmacology and †Surgery, Yale University School of Medicine, New Haven, CT; and the **VA Connecticut Healthcare System, West Haven, CT; ***Beth Israel Deaconess Medical Center, Department of Cardiology, Harvard University, Boston, MA
| | - Felix J.V. Schlösser
- Departments of *Pharmacology and †Surgery, Yale University School of Medicine, New Haven, CT; and the **VA Connecticut Healthcare System, West Haven, CT; ***Beth Israel Deaconess Medical Center, Department of Cardiology, Harvard University, Boston, MA
| | - Bart E. Muhs
- Departments of *Pharmacology and †Surgery, Yale University School of Medicine, New Haven, CT; and the **VA Connecticut Healthcare System, West Haven, CT; ***Beth Israel Deaconess Medical Center, Department of Cardiology, Harvard University, Boston, MA
| | - Michael A. Nelson
- Departments of *Pharmacology and †Surgery, Yale University School of Medicine, New Haven, CT; and the **VA Connecticut Healthcare System, West Haven, CT; ***Beth Israel Deaconess Medical Center, Department of Cardiology, Harvard University, Boston, MA
| | - Alan Dardik†
- Departments of *Pharmacology and †Surgery, Yale University School of Medicine, New Haven, CT; and the **VA Connecticut Healthcare System, West Haven, CT; ***Beth Israel Deaconess Medical Center, Department of Cardiology, Harvard University, Boston, MA
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Maddux FW, Shetty S, del Aguila MA, Nelson MA, Murray BM. Effect of erythropoiesis-stimulating agents on healthcare utilization, costs, and outcomes in chronic kidney disease. Ann Pharmacother 2007; 41:1761-9. [PMID: 17895328 DOI: 10.1345/aph.1k194] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
Abstract
BACKGROUND Anemia commonly complicates chronic kidney disease (CKD). Treating anemia of CKD with erythropoiesis-stimulating agents (ESAs) may attenuate cardiovascular and renal sequelae, reducing morbidity, mortality, and healthcare costs. OBJECTIVE To compare clinical outcomes, healthcare utilization, and costs in ESA-treated and untreated patients with anemia of CKD who are not on dialysis. METHODS This retrospective claims analysis considered more than 13 million US health plan members for outpatient, inpatient, emergency department, and prescription experience. Eligible patients were aged 15 years or older with 2 or more ICD-9 diagnoses of CKD or 1 or more CKD diagnosis and 1 or more claims for ESA within 12 months. The first CKD diagnosis within the study period (January 1, 2000-December 31, 2003) defined the index date. Anemia was ascertained by ICD-9 codes or ESA claims on or after the CKD index date. Patients were censored for dialysis, transplant, inpatient death, disenrollment, or study end. Utilization and costs per patient per month were compared between ESA and non-ESA patients. Generalized linear modeling identified predictors of total and anemia-related costs. RESULTS Of 26,244 patients with CKD, 8188 (31.2%) had anemia; of those, only 14.6% (n = 1197) received ESAs. ESA recipients had lower total monthly healthcare costs than did untreated anemic patients ($3876 vs $4758; p = 0.0061). Lower monthly inpatient and emergency department costs in treated versus untreated anemic patients ($2507 vs $3849 and $46.56 vs $81, respectively; both p < 0.0001) outweighed higher outpatient and laboratory costs from ESA use ($602 vs $397 and $23.50 vs $14.34, respectively; both p < 0.0001). Multivariate analysis revealed that ESA users had lower adjusted monthly total costs ($2962 vs $3373) compared with non-ESA patients. CONCLUSIONS ESA use was associated with mean total cost savings of $411 per patient per month, reflecting reduced inpatient and emergency department visits and costs, and with lower inpatient mortality and longer time to dialysis. The low (14.6%) ESA treatment rate for anemia highlights the continuing deficit in CKD care.
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Voeltz MD, Nelson MA, McDaniel MC, Manoukian SV. The important properties of contrast media: focus on viscosity. J Invasive Cardiol 2007; 19:1A-9A. [PMID: 17592180] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
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Shi J, Kahle A, Hershey JWB, Honchak BM, Warneke JA, Leong SPL, Nelson MA. Decreased expression of eukaryotic initiation factor 3f deregulates translation and apoptosis in tumor cells. Oncogene 2006; 25:4923-36. [PMID: 16532022 DOI: 10.1038/sj.onc.1209495] [Citation(s) in RCA: 75] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Abstract
The eukaryotic initiation factor 3f (eIF3f) is the p47 subunit of the multi-subunit eIF3 complex. eIF3 plays an important role in translation initiation. In the present study, we investigate the biological function of eIF3f in translation and apoptosis in tumor cells. We demonstrated for the first time that eIF3f is downregulated in most human tumors using a cancer profiling array and confirmed by real-time reverse transcription PCR in melanoma and pancreatic cancer. Overexpression of eIF3f inhibits cell proliferation and induces apoptosis in melanoma and pancreatic cancer cells. Silencing of eIF3f protects melanoma cells from apoptosis. We further investigated the biological function of eIF3f. In vitro translation studies indicate that eIF3f is a negative regulator of translation and that the region between amino acids 170 and 248 of eIF3f is required for its translation regulatory function. Ectopic expression of eIF3f inhibits translation and overall cellular protein synthesis. Ribosome profile and ribosomal RNA (rRNA) fragmentation assays revealed that eIF3f reduces ribosomes, which may be associated with rRNA degradation. We propose that eIF3f may play a role in ribosome degradation during apoptosis. These data provide critical insights into the cellular function of eIF3f and in linking translation initiation and apoptosis.
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Affiliation(s)
- J Shi
- Department of Pathology, University of Arizona, Tucson, AZ 85724, USA
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Sokol SI, Portnay EL, Curtis JP, Nelson MA, Hebert PR, Setaro JF, Foody JM. Modulation of the renin-angiotensin-aldosterone system for the secondary prevention of stroke. Neurology 2005; 63:208-13. [PMID: 15277610 DOI: 10.1212/01.wnl.0000130360.21618.d0] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Recurrent stroke is a major public health concern and new treatment strategies are needed. While modulation of the renin angiotensin aldosterone system (RAAS) has proven effective in reducing recurrent cardiac events, its role in preventing recurrent cerebrovascular events remains unclear. RAAS is both a circulating and tissue based hormonal system that regulates homeostasis and tissue responses to injury in both the CNS and the periphery, via the activity of angiotensin II (Ang II). Vascular and hematologic effects induced by Ang II including endothelial dysfunction, vascular structural changes, inflammation, hemostasis, and fibrinolysis are increasingly linked to the occurrence of cerebrovascular events. Animal models have shown that RAAS modulation may be protective in cerebrovascular disease. The HOPE and LIFE trials support the role of blood pressure independent mechanisms of RAAS modulation for improving outcomes in a broad range of patients with cardiovascular disease but do not specifically address recurrent stroke prevention. PROGRESS, a trial of secondary stroke prevention, demonstrates that blood pressure reduction with a combination strategy including the routine use of ACE inhibitors prevents recurrent stroke. Current evidence suggests that the RAAS plays an important role in the development and progression of cerebrovascular disease. Modulation of the RAAS holds promise for the secondary prevention of stroke, however, ongoing clinical trials will better define the exact role of ACE inhibitor and angiotensin II Type 1 receptor blocker therapy in stroke survivors.
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MESH Headings
- Aged
- Angiotensin-Converting Enzyme Inhibitors/pharmacology
- Angiotensin-Converting Enzyme Inhibitors/therapeutic use
- Animals
- Brain/drug effects
- Brain/metabolism
- Chronic Disease
- Double-Blind Method
- Drug Evaluation, Preclinical
- Endothelium, Vascular/drug effects
- Endothelium, Vascular/physiopathology
- Endothelium, Vascular/ultrastructure
- Fibrinolysis/drug effects
- Hemostasis/drug effects
- Humans
- Inflammation/drug therapy
- Inflammation/physiopathology
- Middle Aged
- Nerve Regeneration
- Randomized Controlled Trials as Topic
- Rats
- Receptor, Angiotensin, Type 1/drug effects
- Receptor, Angiotensin, Type 1/physiology
- Receptor, Angiotensin, Type 2/physiology
- Renin-Angiotensin System/drug effects
- Renin-Angiotensin System/physiology
- Secondary Prevention
- Stroke/physiopathology
- Stroke/prevention & control
- Treatment Outcome
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Affiliation(s)
- S I Sokol
- Section of Cardiovascular Medicine, Yale University School of Medicine and Yale-New Haven Hospital, New Haven, CT 06520-8025, USA.
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Abstract
The field of DNA microarray technology has necessitated the cooperative efforts of interdisciplinary scientific teams to achieve its primary goal of rapidly measuring global gene expression patterns. A collaborative effort was established to produce a chemically reactive surface on glass slide substrates to which unmodified DNA will covalently bind for improvement of cDNA microarray technology. Using the p-aminophenyl trimethoxysilane (ATMS)/diazotization chemistry that was developed, microarrays were fabricated and analyzed. This immobilization method produced uniform spots containing equivalent or greater amounts of DNA than commercially available immobilization techniques. In addition, hybridization analyses of microarrays made with ATMS/diazotization chemistry showed very sensitive detection of the target sequence, two to three orders of magnitude more sensitive than the commercial chemistries. Repeated stripping and re-hybridization of these slides showed that DNA loss was minimal, allowing multiple rounds of hybridization. Thus, the ATMS/diazotization chemistry facilitated covalent binding of unmodified DNA, and the reusable microarrays that were produced showed enhanced levels of hybridization and very low background fluorescence.
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Affiliation(s)
- P L Dolan
- Department of Biology, University of New Mexico, Albuquerque, NM 87131, USA
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Abstract
We describe several analytical techniques for use in developing genetic models of oncogenesis including: methods for the selection of important genetic events, construction of graph models (including distance-based trees, branching trees, contingency trees and directed acyclic graph models) from these events and methods for interpretation of the resulting models. The models can be used to make predictions about: which genetic events tend to occur early, which events tend to occur together and the likely order of events. Unlike simple path models of oncogenesis, our models allow dependencies to exist between specific genetic changes and allow for multiple, divergent paths in tumor progression. A variety of genetic events can be used with the graph models including chromosome breaks, losses or gains of large DNA regions, small mutations and changes in methylation. As an application of the techniques, we use a recently published cytogenetic analysis of 206 melanoma cases [Nelson et al. (2000), Cancer Genet. Cytogenet.122, 101-109] to derive graph models for chromosome breaks in melanoma. Among our predictions are: (1) breaks in 6q1 and 1q1 are early events, with 6q1 preferentially occurring first and increasing the probability of a break in 1q1 and (2) breaks in the two sets [1p1, 1p2, 9q1] and [1q1, 7p2, 9p2] tend to occur together. This study illustrates that the application of graph models to genetic data from tumor sets provide new information on the interrelationships among genetic changes during tumor progression.
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Affiliation(s)
- M D Radmacher
- Biometric Research Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
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Sargent LM, Nelson MA, Lowry DT, Senft JR, Jefferson AM, Ariza ME, Reynolds SH. Detection of three novel translocations and specific common chromosomal break sites in malignant melanoma by spectral karyotyping. Genes Chromosomes Cancer 2001; 32:18-25. [PMID: 11477657 DOI: 10.1002/gcc.1162] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
Chromosomal aberrations in malignant melanoma cells have been reported using standard chromosome banding analysis and comparative genomic hybridization. To identify marker chromosomes and translocations that are difficult to characterize by standard banding analysis, 15 early passage malignant melanoma cell lines were examined using spectral karyotyping. All 15 tumor cell lines had lost all or part of 1p and 10q. Losses of material on chromosome arms 4p (12/15), 6q (12/15), 9p (15/15), 12p (13/15), 12q (13/15), 13q (11/15), and 19q (14/15) were the next most frequent events. Gain of chromosome arms 1q (11/15), 6p (13/15), and 20q11 (14/15) was also observed. Interestingly, we identified translocations der(12)t(12;20)(q15;q11), der(19)t(10;19)(q23;q13), and der(12)t(12;19)(q13;q13) in 4/15 tumors. Three recurring translocations involving four of the most frequent break points were detected. The identification of recurring translocations and unique chromosome break points in melanoma will aid in the identification of the genes that are important in the neoplastic process.
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Affiliation(s)
- L M Sargent
- Toxicology and Molecular Biology Branch, Health Effects Laboratory Division, National Institute of Occupational Safety and Health, Morgantown, West Virginia, USA.
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Hall JA, Nelson MA, Meyer JW, Williamson T, Wagner S. Costs and resources associated with the treatment of overactive bladder using retrospective medical care claims data. Manag Care Interface 2001; 14:69-75. [PMID: 11517841] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/21/2023]
Abstract
The objectives of this study were to determine age- and gender-specific drug treatment prevalence rates for overactive bladder (OAB), and to compare resource use and costs among MCO members receiving drug treatment for OAB. Administrative claims data from seven affiliated health plans were analyzed for 8,661 members with a diagnosis or treatment indicative of OAB during 1998. Resource use and associated costs were analyzed over a four-month follow-up. In 1998, the prevalence of OAB among plan members was 1.1%. Of the patients with OAB, 71% did not receive pharmacotherapy. After multivariate analysis, treatment with tolterodine, oxybutynin, or other OAB treatment did not significantly affect the percent change in total per patient per month (PPPM) costs compared with the group not receiving a pharmacologic agent. Although the adjusted percent change in PPPM pharmacy costs was significantly higher within the tolterodine group, medical and total PPPM costs were not.
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Affiliation(s)
- J A Hall
- Ingenix Pharmaceutical Services, Eden Prairie, Minnesota, USA.
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Abstract
PURPOSE To explore the international activities of American nursing scholars from 1985 to 1995, as indicated by their international teaching, scholarship, and consultation. METHODS All faculty (N = 2,254) teaching in nursing doctoral programs in the United States were surveyed using an investigator-designed questionnaire. The professional characteristics of American nursing scholars who worked abroad and the dates, nature, and types of international activities they undertook were ascertained. From a total of 928 usable returns, 247 described international activity. FINDINGS Data indicated a three-fold increase in international activity from 1985 to 1995 in the three major areas investigated. Universities in Western Europe and Asia were the most frequent recipients of nursing scholarly activity. The scholars or representatives of the host institutions made approximately half the initial contacts. The international hosts or U.S. universities were the predominant providers of funding. Nurses most likely to participate in international scholarly activity were senior faculty who were full professors in doctoral-granting institutions, published in international journals, presented educational topics, and were recognized by peers through membership in honorary organizations. CONCLUSIONS A substantial increase in international nursing scholarship occurred during the decade studied, particularly related to teaching.
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Affiliation(s)
- A A Lash
- School of Nursing, Northern Illinois University, DeKalb, IL, USA.
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Abstract
Anthracyclines are important chemotherapeutic agents that are used for the treatment of various malignancies in both adults and children, but their usefulness has been limited by cardiotoxicity that is usually dose related. Oxidative injury appears to be the cause of myocardial dysfunction when using these drugs. Screening for early myocardial injury with troponin testing, echocardiography, and radionuclide examinations has reduced the incidence of chronic cardiac dysfunction. Various anthracycline analogues have been developed that have less cardiotoxicity. Dexrazoxane, an iron chelator, and the radioprotective agent amifostine protect against cardiac injury, thus allowing the use of higher doses of anthracyclines. Other strategies that have been evaluated are dietary glutamine supplementation and the use of the antioxidant probucol.
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Affiliation(s)
- M A Nelson
- Department of Medicine, the Albert Einstein College of Medicine, Bronx, New York, USA
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Hage DS, Nelson MA. Chromatographic immunoassays. Anal Chem 2001; 73:199A-205A. [PMID: 11321332] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/19/2023]
Affiliation(s)
- D S Hage
- University of Nebraska, Lincoln 68588-0304, USA.
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Bean LE, Dvorachek WH, Braun EL, Errett A, Saenz GS, Giles MD, Werner-Washburne M, Nelson MA, Natvig DO. Analysis of the pdx-1 (snz-1/sno-1) region of the Neurospora crassa genome: correlation of pyridoxine-requiring phenotypes with mutations in two structural genes. Genetics 2001; 157:1067-75. [PMID: 11238395 PMCID: PMC1461564 DOI: 10.1093/genetics/157.3.1067] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We report the analysis of a 36-kbp region of the Neurospora crassa genome, which contains homologs of two closely linked stationary phase genes, SNZ1 and SNO1, from Saccharomyces cerevisiae. Homologs of SNZ1 encode extremely highly conserved proteins that have been implicated in pyridoxine (vitamin B6) metabolism in the filamentous fungi Cercospora nicotianae and in Aspergillus nidulans. In N. crassa, SNZ and SNO homologs map to the region occupied by pdx-1 (pyridoxine requiring), a gene that has been known for several decades, but which was not sequenced previously. In this study, pyridoxine-requiring mutants of N. crassa were found to possess mutations that disrupt conserved regions in either the SNZ or SNO homolog. Previously, nearly all of these mutants were classified as pdx-1. However, one mutant with a disrupted SNO homolog was at one time designated pdx-2. It now appears appropriate to reserve the pdx-1 designation for the N. crassa SNZ homolog and pdx-2 for the SNO homolog. We further report annotation of the entire 36,030-bp region, which contains at least 12 protein coding genes, supporting a previous conclusion of high gene densities (12,000-13,000 total genes) for N. crassa. Among genes in this region other than SNZ and SNO homologs, there was no evidence of shared function. Four of the genes in this region appear to have been lost from the S. cerevisiae lineage.
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Affiliation(s)
- L E Bean
- Department of Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA
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42
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Melo AM, Duarte M, Møller IM, Prokisch H, Dolan PL, Pinto L, Nelson MA, Videira A. The external calcium-dependent NADPH dehydrogenase from Neurospora crassa mitochondria. J Biol Chem 2001; 276:3947-51. [PMID: 11073955 DOI: 10.1074/jbc.m008199200] [Citation(s) in RCA: 66] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
We have inactivated the nuclear gene coding for a putative NAD(P)H dehydrogenase from the inner membrane of Neurospora crassa mitochondria by repeat-induced point mutations. The respiratory rates of mitochondria from the resulting mutant (nde-1) were measured, using NADH or NADPH as substrates under different assay conditions. The results showed that the mutant lacks an external calcium-dependent NADPH dehydrogenase. The observation of NADH and NADPH oxidation by intact mitochondria from the nde-1 mutant suggests the existence of a second external NAD(P)H dehydrogenase. The topology of the NDE1 protein was further studied by protease accessibility, in vitro import experiments, and in silico analysis of the amino acid sequence. Taken together, it appears that most of the NDE1 protein extends into the intermembrane space in a tightly folded conformation and that it remains anchored to the inner mitochondrial membrane by an N-terminal transmembrane domain.
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Affiliation(s)
- A M Melo
- Instituto de Biologia Molecular e Celular, Universidade do Porto, Rua do Campo Alegre 823, 4150-180 Porto, Portugal
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Baines AT, Holubec H, Basye JL, Thorne P, Bhattacharyya AK, Spallholz J, Shriver B, Cui H, Roe D, Clark LC, Earnest DL, Nelson MA. The effects of dietary selenomethionine on polyamines and azoxymethane-induced aberrant crypts. Cancer Lett 2000; 160:193-8. [PMID: 11053649 DOI: 10.1016/s0304-3835(00)00585-1] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
We evaluated the effects of dietary selenomethionine supplementation on colonic polyamine levels and the ability of L-selenomethionine supplementation to modulate the carcinogenic activity of azoxymethane (AOM) in the rat colon. Four-week-old male F344 rats were treated with 15 mg/kg body weight of AOM once a week for 2 weeks. Dietary selenomethionine at a concentration of either 1 or 2 ppm was administered in AIN-76A rodent diet to AOM-treated animals for 16 weeks. Aberrant crypt foci (ACF), precursor lesions of colon cancer, were investigated after the 16 week treatment course. Selenomethionine given in the diet at 2 ppm markedly reduced the number of aberrant crypt foci. The multiplicity of ACFs (i.e. the number of aberrant crypts/focus) and the percentage of microadenomas were also affected by selenomethionine in a dose dependent manner. However, evaluation of the colonic tissue polyamine levels between control and treated groups showed no significant difference. These results demonstrate that selenomethionine can modulate the development of AOM-induced premalignant lesions through a polyamine-independent mechanism.
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Affiliation(s)
- A T Baines
- Pharmacology/Toxicology Department, The University of Arizona, Tucson, AZ, USA
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Nelson MA, Radmacher MD, Simon R, Aickin M, Yang J, Panda L, Emerson J, Roe D, Adair L, Thompson F, Bangert J, Leong SP, Taetle R, Salmon S, Trent J. Chromosome abnormalities in malignant melanoma: clinical significance of nonrandom chromosome abnormalities in 206 cases. Cancer Genet Cytogenet 2000; 122:101-9. [PMID: 11106819 DOI: 10.1016/s0165-4608(00)00281-8] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
We report the cytogenetic abnormalities from a series of 206 primary malignant melanoma specimens referred to a single institution. A total of 169 out of 206 unique cases had chromosome breakpoints. A previously described statistical method was used to detect nonrandom distribution of chromosome breakpoints at the level of chromosome regions. Nonrandom occurrence of chromosome breakpoints (indicating that the observed number of breaks significantly exceeded the expected number of breaks) was detected in 28 regions, suggesting a hierarchy of genetic abnormalities in melanoma. Clinical variables and tumor characteristics were analyzed for associations with the presence of any nonrandom chromosome breakpoints; with individual, nonrandomly involved chromosome regions; and with paired, nonrandomly involved chromosome regions. No nonrandomly involved chromosome regions or pairs of regions appeared to significantly affect survival. These results identify recurring, nonrandom chromosome abnormalities in malignant melanoma. These results suggest that recurring, nonrandom chromosome alterations play a key role in the etiology and/or progression of malignant melanoma and identify targets within the genome for molecular genetic studies.
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Affiliation(s)
- M A Nelson
- Departments of Medicine and Pathology, University of Arizona, Tucson, AZ 85724, USA.
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Smale PE, Nelson MA, Porter NG, Hay AJ. Essential Oil of Eucalyptus olida L. Johnson et K. Hill 1: Variability of Yield and Composition in Foliage from a Seedling Population. Journal of Essential Oil Research 2000. [DOI: 10.1080/10412905.2000.9712161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- Peter E. Smale
- a Smalehort Consultancy & Research , PO Box 356, Motueka , New Zealand
| | - Michael A. Nelson
- b Neltec Horticultural Research & Technology , PO Box 356, Motueka , New Zealand
| | - Noel G. Porter
- c New Zealand Institute for Crop & Food Research Limited, Canterbury Agricultural Science Centre , Private Bag 4704, Christchurch , New Zealand
| | - Amanda J. Hay
- c New Zealand Institute for Crop & Food Research Limited, Canterbury Agricultural Science Centre , Private Bag 4704, Christchurch , New Zealand
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46
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Abstract
This article describes a leadership development course designed to prepare leadership to promote cultural changes in a large health care system undergoing an initiative of patient care redesign. Entitled "Creating A Learning Environment," the course is based on Peter Senge's work. His five disciplines are presented as central concepts with practice examples. Characteristics of a learning environment and strategies to promote the cultural change necessary for its formation are explained.
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Affiliation(s)
- M E Palm
- Inova Learning Network, Inova Fairfax Hospital, 3300 Gallows Road, Falls Church, VA 22042-3300, USA
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47
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Nelson MA, Passeri J, Frishman WH. Therapeutic angiogenesis: a new treatment modality for ischemic heart disease. Heart Dis 2000; 2:314-25. [PMID: 11728275] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/22/2023]
Abstract
Angiogenesis is the process of new blood vessel formation, and has potential clinical use in the management of ischemic heart disease. A considerable amount of ongoing research has recently focused on the process of angiogenesis, including the identification of various factors that can inhibit or stimulate this process. The picture that is emerging suggests that a complex set of interactions involving various cells and cellular products is the key to angiogenesis. In particular, endothelial cells and growth factors, such as vascular endothelial growth factor and fibroblast growth factor, appear to play integral roles in angiogenesis. Various preclinical studies involving animal models of ischemia explored the potential use of angiogenesis in ischemic disease. Based on encouraging results, a number of clinical trials involving angiogenesis have been initiated to determine whether the process of angiogenesis also offers therapeutic benefit in humans.
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Affiliation(s)
- M A Nelson
- Department of Medicine, Albert Einstein College of Medicine, Bronx, New York, USA
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48
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Facteau LM, Nelson MA. Creating a learning environment for tomorrow's health care workforce. Semin Nurse Manag 2000; 8:91-7. [PMID: 11249283] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/19/2023]
Abstract
The complexity of today's health care environment requires new teaching-learning strategies. Inova Health System's creative approach is highlighted through the development of the inova Learning Network.
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Affiliation(s)
- L M Facteau
- Inova Learning Network, 2990 Telestar Court, Falls Church, VA 22042, USA
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Braun EL, Halpern AL, Nelson MA, Natvig DO. Large-scale comparison of fungal sequence information: mechanisms of innovation in Neurospora crassa and gene loss in Saccharomyces cerevisiae. Genome Res 2000; 10:416-30. [PMID: 10779483 DOI: 10.1101/gr.10.4.416] [Citation(s) in RCA: 61] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
We report a large-scale comparison of sequence data from the filamentous fungus Neurospora crassa with the complete genome sequence of Saccharomyces cerevisiae. N. crassa is considerably more morphologically and developmentally complex than S. cerevisiae. We found that N. crassa has a much higher proportion of "orphan" genes than S. cerevisiae, suggesting that its morphological complexity reflects the acquisition or maintenance of novel genes, consistent with its larger genome. Our results also indicate the loss of specific genes from S. cerevisiae. Surprisingly, some of the genes lost from S. cerevisiae are involved in basic cellular processes, including translation and ion (especially calcium) homeostasis. Horizontal gene transfer from prokaryotes appears to have played a relatively modest role in the evolution of the N. crassa genome. Differences in the overall rate of molecular evolution between N. crassa and S. cerevisiae were not detected. Our results indicate that the current public sequence databases have fairly complete samples of gene families with ancient conserved regions, suggesting that further sequencing will not substantially change the proportion of genes with homologs among distantly related groups. Models of the evolution of fungal genomes compatible with these results, and their functional implications, are discussed.
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Affiliation(s)
- E L Braun
- Department of Biology, University of New Mexico, Albuquerque, New Mexico 87131, USA
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50
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Hendricks-Ferguson VL, Nelson MA. Laparoscopic splenectomy for splenic sequestration crisis. AORN J 2000; 71:820-2, 825-8, 831-4; quiz 835-42. [PMID: 10806537] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2023]
Abstract
Medical and surgical advances have improved the treatment of splenic sequestration crisis in pediatric patients with sickle cell disease (SCD). Rapid enlargement of the spleen can result from sickled blood cels being trapped in the spleen, which can be life threatening. The laparoscopic splenectomy procedure using the lateral approach has been adapted successfully for the pediatric patient since 1993. Children with SCD who have a history of a splenic sequestration crisis usually are scheduled for an elective splenectomy procedure after the first documented crisis to reduce the risk of death. Some key benefits of this new surgical approach include a shortened hospital stay, decreased postoperative pain, and faster recovery and return to normal activities for the child with SCD.
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Affiliation(s)
- V L Hendricks-Ferguson
- Jewish Hospital College of Nursing and Allied Health, Washington University Medical Center, St Louis, USA
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