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Wang X, Ma B, Liu H, Bao Y, Li M, McLaughlin NB, Guo L. Improvement in gravel-mulched land soil nutrient and bacterial community diversity with Lonicera japonica. Front Microbiol 2023; 14:1225503. [PMID: 38130947 PMCID: PMC10733477 DOI: 10.3389/fmicb.2023.1225503] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Accepted: 11/21/2023] [Indexed: 12/23/2023] Open
Abstract
Gravel-mulched land in China suffers from poor natural resources and fragile ecological environment, posing a challenge to effective restoration of ecological function. Lonicera japonica, a traditional Chinese herb used for treating human diseases, is a highly adaptable and resilient plant species, can effectively improve the soil properties, and may have important implications for the ecology and economy of gravel-mulched land. A study was conducted in a gravel-mulched field to measure the impact of planting the L. japonica (including control (CK), 1-year, 2-year, and 4-year cultivation of plants) on (i) dynamic changes in soil nutrient and enzyme activity properties, and (ii) soil rhizosphere microbial community structure characteristics. We found that the concentration of soil organic carbon, available nitrogen, available phosphorus and available potassium in L. japonica soil after cultivation for 1-4 years increased by 11-409%. The urease, phosphatase and catalase activities were increased by 11-560%, with the highest nutrient concentration and enzyme activity in 4-year plants. The pH value gradually decreased after cultivation. The improved soil environments increased soil bacterial community diversity. Planting L. japonica significantly increased the bacterial ACE, Chao1 index, Simpson index, and Shannon-Wiener index. The Firmicutes, Proteobacteria and Bacteroidetes were observed in dominant phyla. The relative abundance of eight genera, including Streptococcus, Veillonella and Rothia, was significantly reduced by more than 1%. Taken together, these soil indicators suggest that planting L. japonica in the short term would be a cost-effective strategy to combat soil degradation in a gravel-mulched ecosystem.
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Affiliation(s)
- Xing Wang
- Institute of Forestry and Grassland Ecology, Ningxia Academy of Agricultural and Forestry Sciences, Yinchuan, China
- Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
| | - Bin Ma
- Institute of Forestry and Grassland Ecology, Ningxia Academy of Agricultural and Forestry Sciences, Yinchuan, China
- State Key Laboratory for Quality Ensurance and Sustainable Use of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
| | - Hua Liu
- Institute of Forestry and Grassland Ecology, Ningxia Academy of Agricultural and Forestry Sciences, Yinchuan, China
| | - Yangmei Bao
- Institute of Forestry and Grassland Ecology, Ningxia Academy of Agricultural and Forestry Sciences, Yinchuan, China
| | - Ming Li
- Institute of Forestry and Grassland Ecology, Ningxia Academy of Agricultural and Forestry Sciences, Yinchuan, China
| | - Neil B. McLaughlin
- Ottawa Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, ON, Canada
| | - Lanping Guo
- State Key Laboratory for Quality Ensurance and Sustainable Use of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
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Liu H, Wang J, Sun X, McLaughlin NB, Jia S, Liang A, Zhang S. The driving mechanism of soil organic carbon biodegradability in the black soil region of Northeast China. Sci Total Environ 2023; 884:163835. [PMID: 37137375 DOI: 10.1016/j.scitotenv.2023.163835] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/26/2023] [Revised: 04/16/2023] [Accepted: 04/26/2023] [Indexed: 05/05/2023]
Abstract
The biodegradability of soil organic carbon (BSOC), defined as soil mineralization C per unit of soil organic carbon (SOC), is considered to be an important indicator of SOC stability and is closely related to the global C cycle. However, the magnitude and driving mechanism of BSOC in farmland remain largely unexplored, especially at the regional scale. Here, we conducted regional scale sampling to investigate latitude distribution pattern of BSOC and the relative contributions of biotic (soil micro-food web) and abiotic (climate and soil) drivers to BSOC in the black soil region of Northeast China. Results showed that BSOC declined with increasing latitude, which indicates that as the latitude increases, SOC becomes more stable in the black soil region of Northeast China. Over a range of latitude from 43°N to 49°N, BSOC was negatively correlated with soil micro-food web metrics of diversity (indicated by species richness), biomass and connectance, and soil factors of soil pH and clay content (CC), while it was positively correlated with climate factors of mean annual temperature (MAT), mean annual precipitation (MAP) and soil factor of soil bulk density (SBD). Among those predictors, soil micro-food web metrics were the most direct factors contributing to the variations of BSOC, which exerted the largest total effect on BSOC (-0.809). Collectively, our results provide convincing evidence that soil micro-food web metrics play a direct vital role in determining the distribution pattern of BSOC over a range of latitudes in the black soil region of Northeast China. This highlights the necessity of considering the role of soil organisms in regulating C dynamics in prediction of SOC mineralization and retention in the terrestrial ecosystem.
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Affiliation(s)
- Hongwen Liu
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130012, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jianjun Wang
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou 570228, China
| | - Xin Sun
- Key Laboratory of Urban Environment and Health, Ningbo Observation and Research Station, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China
| | - Neil B McLaughlin
- Ottawa Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa K1A 0C6, Canada
| | - Shuxia Jia
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130012, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Aizhen Liang
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130012, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Shixiu Zhang
- State Key Laboratory of Black Soils Conservation and Utilization, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130012, China; University of Chinese Academy of Sciences, Beijing 100049, China.
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Zhang Z, Han X, Pan F, Liu H, Yan J, Zou W, McLaughlin NB, Hao X. Land use alters diazotroph community structure by regulating bacterivores in Mollisols in Northeast China. Front Microbiol 2022; 13:941170. [PMID: 35910639 PMCID: PMC9335130 DOI: 10.3389/fmicb.2022.941170] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2022] [Accepted: 06/27/2022] [Indexed: 11/27/2022] Open
Abstract
Changes in land use can generate environmental pressures that influence soil biodiversity, and numerous studies have examined the influences of land use on the soil microbial communities. However, little is known about the effects of land use on ecological interactions of soil microbes and their predators. Diazotrophs are key soil microbes that play important functional roles in fixing atmospheric nitrogen. In this study, we investigated the co-association of diazotroph community members and patterns of diazotroph and bacterivore networks under different long-term land uses including cropland, grassland, and bare land. Diazotroph community was characterized by high-throughput sequencing. The results indicated that land use type influenced the dominant genera of diazotrophs and shaped the occurrence of specific indicator diazotroph taxa. Co-existing pattern analysis of diazotrophs and bacterivores indicated that grassland converted from cropland increased the complexity of diazotroph and bacterivore network structure. The number of nodes for diazotrophs and bacterivores was higher in grassland than in cropland and bare land. Random forest analysis revealed that six bacterivore genera Cephalobus, Protorhabditis, Acrobeloides, Mesorhabditis, Anaplectus, and Monhystera had significant effects on diazotrophs. Bacterivores were found to have predominantly negative effects in bare land. Different bacterivores had differing effects with respect to driving changes in diazotroph community structure. Structural equation model showed that land use could control diazotroph community composition by altering soil properties and regulating abundance of bacterivores. These findings accordingly enhance our current understanding of mechanisms underlying the influence of land use patterns on diazotrophs from the perspective of soil food webs.
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Affiliation(s)
- Zhiming Zhang
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Xiaozeng Han
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin, China
| | - Fengjuan Pan
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin, China
- *Correspondence: Fengjuan Pan,
| | - Hang Liu
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin, China
- Key Laboratory of Soil Resource Sustainable Utilization for Jilin Province Commodity Grain Bases, College of Resource and Environmental Science, Jilin Agricultural University, Changchun, China
| | - Jun Yan
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin, China
| | - Wenxiu Zou
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin, China
| | - Neil B. McLaughlin
- Ottawa Research and Development Centre, Agriculture and Agri-Food Canada, Ottawa, ON, Canada
| | - Xiangxiang Hao
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Harbin, China
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Guo X, Ma BL, McLaughlin NB, Wu X, Chen B, Gao Y. Nitrogen utilisation-efficient oilseed rape (Brassica napus) genotypes exhibit stronger growth attributes from flowering stage onwards. Funct Plant Biol 2021; 48:755-765. [PMID: 33715767 DOI: 10.1071/fp20263] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2020] [Accepted: 02/11/2021] [Indexed: 06/12/2023]
Abstract
Preliminary studies observed a lower growth activity during the vegetative stage with higher growth attributes at the pod-filling stage among the high nitrogen (N) utilisation efficiency (NUtE) oilseed rape (Brassica napus L.) genotypes, compared with the low NUtE genotypes. Therefore, we hypothesised that there would exist a critical growth stage when distinctive phenotypic traits are exhibited to regulate yield formation and NUE. A field experiment and a hydroponic culture were conducted to characterise the differences in shoot and root physiological indicators of the high and low NUtE oilseed rape genotypes at seedling, bud, bolting, flowering and pod-filling stages. We found that flowering was the critical period when the reverse growth habit occurred between high and low NUtE genotypes. The high NUtE genotypes displayed larger values of root traits, stronger N uptake kinetics parameters, higher activity of leaf glutamine synthetase (GS) and glutamate synthetase (GOGAT), larger SPAD values and net photosynthetic rate, ultimately leading to higher seed yield and NUE. Our results indicate that flowering is the critical growth stage to distinguish the high from low NUtE oilseed rape genotypes, and plant breeders may focus on selecting root and shoot phenotypic traits from flowering stage onwards to achieve both high yields and NUE for oilseed rape genotypes.
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Affiliation(s)
- Xiao Guo
- College of Natural Resource and Environment, Northwest A and F University, 712100 Yangling, Shaanxi, China; and Ottawa Research and Development Centre, Agriculture and Agri-Food Canada, K1A 0C6 Ottawa, Ontario, Canada
| | - Bao-Luo Ma
- Ottawa Research and Development Centre, Agriculture and Agri-Food Canada, K1A 0C6 Ottawa, Ontario, Canada
| | - Neil B McLaughlin
- Ottawa Research and Development Centre, Agriculture and Agri-Food Canada, K1A 0C6 Ottawa, Ontario, Canada
| | - Xiaoming Wu
- Institute of Oil Crop Research, Chinese Academy of Agricultural Sciences, 430062 Wuhan, Hubei, China
| | - Biyun Chen
- Institute of Oil Crop Research, Chinese Academy of Agricultural Sciences, 430062 Wuhan, Hubei, China
| | - Yajun Gao
- College of Natural Resource and Environment, Northwest A and F University, 712100 Yangling, Shaanxi, China; and Key Laboratory of Plant Nutrition and the Agri-environment in Northwest China, Ministry of Agriculture, 712100 Yangling, Shaanxi, China; and Corresponding author.
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Mi J, Gregorich EG, Xu S, McLaughlin NB, Liu J. Effect of bentonite as a soil amendment on field water-holding capacity, and millet photosynthesis and grain quality. Sci Rep 2020; 10:18282. [PMID: 33106573 PMCID: PMC7589466 DOI: 10.1038/s41598-020-75350-9] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Accepted: 10/06/2020] [Indexed: 11/12/2022] Open
Abstract
A field experiment was conducted in a semi-arid region in northern China to evaluate the effects of bentonite soil amendment on field water-holding capacity, plant available water, and crop photosynthesis and grain quality parameters for millet [Setaria italic (L.) Beauv.] production over a 5-year period. Treatments included six rates of bentonite amendments (0, 6, 12, 18, 24 and 30 Mg ha−1) applied only once in 2011. The application of bentonite significantly (P < 0.05) increased field water-holding capacity and plant available water in the 0–40 cm layer. Bentonite also significantly (P < 0.05) increased the emergence rate, above-ground dry matter accumulation (AGDM), net photosynthesis rate (Pr), transpiration rate (Tr), soil and plant analysis development (SPAD) and leaf water use efficiency (WUE). It also increased grain quality parameters including grain protein, fat and fiber content. Averaged over all the years, the optimum rate of bentonite was 24 Mg ha−1 for all plant growth and photosynthesis parameters except for grain quality where 18 Mg ha−1 bentonite had the greatest effect. This study suggests that bentonite application in semi-arid regions would have beneficial effects on crop growth and soil water-holding properties.
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Affiliation(s)
- Junzhen Mi
- National Outstanding Agriculture Research Talents and Innovation Team, Inner Mongolia Agricultural University, Hohhot, 010019, Inner Mongolia, China.,Central Experimental Farm, Agriculture and Agri-Food Canada, Ottawa Research and Development Centre, Ottawa, ON, K1A 0C6, Canada
| | - Edward G Gregorich
- Central Experimental Farm, Agriculture and Agri-Food Canada, Ottawa Research and Development Centre, Ottawa, ON, K1A 0C6, Canada
| | - Shengtao Xu
- Agricultural Environment and Resources Institute, Yunnan Academy of Agricultural Sciences, Kunming, 650205, Yunnan, China
| | - Neil B McLaughlin
- Central Experimental Farm, Agriculture and Agri-Food Canada, Ottawa Research and Development Centre, Ottawa, ON, K1A 0C6, Canada
| | - Jinghui Liu
- National Outstanding Agriculture Research Talents and Innovation Team, Inner Mongolia Agricultural University, Hohhot, 010019, Inner Mongolia, China.
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Sun B, Jia S, Zhang S, McLaughlin NB, Liang A, Chen X, Liu S, Zhang X. No tillage combined with crop rotation improves soil microbial community composition and metabolic activity. Environ Sci Pollut Res Int 2016; 23:6472-82. [PMID: 26631020 DOI: 10.1007/s11356-015-5812-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2015] [Accepted: 11/13/2015] [Indexed: 06/05/2023]
Abstract
Soil microbial community can vary with different agricultural managements, which in turn can affect soil quality. The objective of this work was to evaluate the effects of long-term tillage practice (no tillage (NT) and conventional tillage (CT)) and crop rotation (maize-soybean (MS) rotation and monoculture maize (MM)) on soil microbial community composition and metabolic capacity in different soil layers. Long-term NT increased the soil organic carbon (SOC) and total nitrogen (TN) mainly at the 0-5 cm depth which was accompanied with a greater microbial abundance. The greater fungi-to-bacteria (F/B) ratio was found in NTMS at the 0-5 cm depth. Both tillage and crop rotation had a significant effect on the metabolic activity, with the greatest average well color development (AWCD) value in NTMS soil at all three soil depths. Redundancy analysis (RDA) showed that the shift in microbial community composition was accompanied with the changes in capacity of utilizing different carbon substrates. Therefore, no tillage combined with crop rotation could improve soil biological quality and make agricultural systems more sustainable.
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Affiliation(s)
- Bingjie Sun
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, 4888 Shengbei Street, Changchun, Jilin, 130102, China
- University of Chinese Academy of Science, Beijing, 100049, China
| | - Shuxia Jia
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, 4888 Shengbei Street, Changchun, Jilin, 130102, China.
| | - Shixiu Zhang
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, 4888 Shengbei Street, Changchun, Jilin, 130102, China
| | - Neil B McLaughlin
- Eastern Cereal and Oilseed Research Centre, Agriculture and Agri-Food Canada, Ottawa, K1A 0C6, Canada
| | - Aizhen Liang
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, 4888 Shengbei Street, Changchun, Jilin, 130102, China
| | - Xuewen Chen
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, 4888 Shengbei Street, Changchun, Jilin, 130102, China
| | - Siyi Liu
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, 4888 Shengbei Street, Changchun, Jilin, 130102, China
- University of Chinese Academy of Science, Beijing, 100049, China
| | - Xiaoping Zhang
- Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, 4888 Shengbei Street, Changchun, Jilin, 130102, China
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Xu S, Zhang L, McLaughlin NB, Mi J, Chen Q, Liu J. Effect of synthetic and natural water-absorbing soil amendments on photosynthesis characteristics and tuber nutritional quality of potato in a semi-arid region. J Sci Food Agric 2016; 96:1010-1017. [PMID: 25820940 DOI: 10.1002/jsfa.7188] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2015] [Revised: 03/18/2015] [Accepted: 03/21/2015] [Indexed: 06/04/2023]
Abstract
BACKGROUND The effect of water-absorbing soil amendments on photosynthesis characteristics and tuber nutritional quality was investigated in a field experiment in a semi-arid region in northern China in 2010-2012. Treatments included two synthetic water-absorbing amendments, potassium polyacrylate (PAA) and polyacrylamide (PAM), and one natural amendment, humic acid (HA), both as single amendments and compound amendments (HA combined with PAA or PAM), and a no amendment control. RESULTS Soil amendments had a highly significant effect (P ≤ 0.01) on photosynthesis characteristics, dry biomass, crop root/shoot (R/S) ratio and tuber nutritional quality. They improved both dry biomass above ground and dry biomass underground in the whole growing season by 4.6-31.2 and 1.1-83.1% respectively in all three years. Crop R/S ratio was reduced in the early growing season by 2.0-29.4% and increased in the later growing season by 2.3-32.6%. Soil amendments improved leaf soil plant analysis development value, net photosynthesis rate, stomatal conductance and transpiration rate by 1.4-17.0, 5.1-45.9, 2.4-90.6 and 2.0-22.6% respectively and reduced intercellular CO2 concentration by 2.1-19.5% in all three years. CONCLUSION Amendment treatment with PAM + HA always had the greatest effect on photosynthesis characteristics and tuber nutritional quality among all amendment treatments and thus merits further research.
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Affiliation(s)
- Shengtao Xu
- Oat Scientific and Technical Innovation Team, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010019, China
- Eastern Cereal and Oilseed Research Centre, Agriculture and Agri-Food Canada, Ottawa, ON, K1A 0C6, Canada
| | - Lei Zhang
- Institute of Economic Crops, Yunnan Academy of Agricultural Sciences, Kunming, Yunnan, 650205, China
| | - Neil B McLaughlin
- Eastern Cereal and Oilseed Research Centre, Agriculture and Agri-Food Canada, Ottawa, ON, K1A 0C6, Canada
| | - Junzhen Mi
- Oat Scientific and Technical Innovation Team, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010019, China
| | - Qin Chen
- College of Agronomy, Northwest A&F University, Taicheng Road 3#, Yangling, Shaanxi, 712100, China
| | - Jinghui Liu
- Oat Scientific and Technical Innovation Team, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, 010019, China
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Drury CF, Tan CS, Welacky TW, Reynolds WD, Zhang TQ, Oloya TO, McLaughlin NB, Gaynor JD. Reducing nitrate loss in tile drainage water with cover crops and water-table management systems. J Environ Qual 2014; 43:587-598. [PMID: 25602660 DOI: 10.2134/jeq2012.0495] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Nitrate lost from agricultural soils is an economic cost to producers, an environmental concern when it enters rivers and lakes, and a health risk when it enters wells and aquifers used for drinking water. Planting a winter wheat cover crop (CC) and/or use of controlled tile drainage-subirrigation (CDS) may reduce losses of nitrate (NO) relative to no cover crop (NCC) and/or traditional unrestricted tile drainage (UTD). A 6-yr (1999-2005) corn-soybean study was conducted to determine the effectiveness of CC+CDS, CC+UTD, NCC+CDS, and NCC+UTD treatments for reducing NO loss. Flow volume and NO concentration in surface runoff and tile drainage were measured continuously, and CC reduced the 5-yr flow-weighted mean (FWM) NO concentration in tile drainage water by 21 to 38% and cumulative NO loss by 14 to 16% relative to NCC. Controlled tile drainage-subirrigation reduced FWM NO concentration by 15 to 33% and cumulative NO loss by 38 to 39% relative to UTD. When CC and CDS were combined, 5-yr cumulative FWM NO concentrations and loss in tile drainage were decreased by 47% (from 9.45 to 4.99 mg N L and from 102 to 53.6 kg N ha) relative to NCC+UTD. The reductions in runoff and concomitant increases in tile drainage under CC occurred primarily because of increases in near-surface soil hydraulic conductivity. Cover crops increased corn grain yields by 4 to 7% in 2004 increased 3-yr average soybean yields by 8 to 15%, whereas CDS did not affect corn or soybean yields over the 6 yr. The combined use of a cover crop and water-table management system was highly effective for reducing NO loss from cool, humid agricultural soils.
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Jia S, McLaughlin NB, Gu J, Li X, Wang Z. Relationships between root respiration rate and root morphology, chemistry and anatomy in Larix gmelinii and Fraxinus mandshurica. Tree Physiol 2013; 33:579-89. [PMID: 23824239 DOI: 10.1093/treephys/tpt040] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
Tree roots are highly heterogeneous in form and function. Previous studies revealed that fine root respiration was related to root morphology, tissue nitrogen (N) concentration and temperature, and varied with both soil depth and season. The underlying mechanisms governing the relationship between root respiration and root morphology, chemistry and anatomy along the root branch order have not been addressed. Here, we examined these relationships of the first- to fifth-order roots for near surface roots (0-10 cm) of 22-year-old larch (Larix gmelinii L.) and ash (Fraxinus mandshurica L.) plantations. Root respiration rate at 18 °C was measured by gas phase O2 electrodes across the first five branching order roots (the distal roots numbered as first order) at three times of the year. Root parameters of root diameter, specific root length (SRL), tissue N concentration, total non-structural carbohydrates (starch and soluble sugar) concentration (TNC), cortical thickness and stele diameter were also measured concurrently. With increasing root order, root diameter, TNC and the ratio of root TNC to tissue N concentration increased, while the SRL, tissue N concentration and cortical proportion decreased. Root respiration rate also monotonically decreased with increasing root order in both species. Cortical tissue (including exodermis, cortical parenchyma and endodermis) was present in the first three order roots, and cross sections of the cortex for the first-order root accounted for 68% (larch) and 86% (ash) of the total cross section of the root. Root respiration was closely related to root traits such as diameter, SRL, tissue N concentration, root TNC : tissue N ratio and stele-to-root diameter proportion among the first five orders, which explained up to 81-94% of variation in the rate of root respiration for larch and up to 83-93% for ash. These results suggest that the systematic variations of root respiration rate within tree fine root system are possibly due to the changes of tissue N concentration and anatomical structure along root branch orders in both tree species, which provide deeper understanding in the mechanism of how root traits affect root respiration in woody plants.
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Affiliation(s)
- Shuxia Jia
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, PR China
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Jia S, Wang Z, Li X, Zhang X, McLaughlin NB. Effect of nitrogen fertilizer, root branch order and temperature on respiration and tissue N concentration of fine roots in Larix gmelinii and Fraxinus mandshurica. Tree Physiol 2011; 31:718-26. [PMID: 21849591 DOI: 10.1093/treephys/tpr057] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
Root respiration is closely related to root morphology, yet it is unclear precisely how to distinguish respiration-related root physiological functions within the branching fine root system. Root respiration and tissue N concentration were examined for different N fertilization treatments, sampling dates, branch orders and temperatures of larch (Larix gmelinii L.) and ash (Fraxinus mandshurica L.) using the excised roots method. The results showed that N fertilization enhanced both root respiration and tissue N concentration for all five branch orders. The greatest increases in average root respiration for N fertilization treatment were 13.30% in larch and 18.25% in ash at 6°C. However, N fertilization did not change the seasonal dynamics of root respiration. Both root respiration and root tissue N concentration decreased with increase in root branch order. First-order (finest) roots exhibited the highest respiration rates and tissue N concentrations out of the five root branch orders examined. There was a highly significant linear relationship between fine root N concentration and root respiration rate. Root N concentration explained >60% of the variation in respiration rate at any given combination of root order and temperature. Root respiration showed a classical exponential relationship with temperature, with the Q(10) for root respiration in roots of different branching orders ranging from 1.62 to 2.20. The variation in root respiration by order illustrates that first-order roots are more metabolically active, suggesting that roots at different branch order positions have different physiological functions. The highly significant relationship between root respiration at different branch orders and root tissue N concentration suggests that root tissue N concentration may be used as a surrogate for root respiration, simplifying future research into the C dynamics of rooting systems.
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Affiliation(s)
- Shuxia Jia
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130012, PR China
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Eriksson PR, Mendiratta G, McLaughlin NB, Wolfsberg TG, Mariño-Ramírez L, Pompa TA, Jainerin M, Landsman D, Shen CH, Clark DJ. Global regulation by the yeast Spt10 protein is mediated through chromatin structure and the histone upstream activating sequence elements. Mol Cell Biol 2005; 25:9127-37. [PMID: 16199888 PMCID: PMC1265784 DOI: 10.1128/mcb.25.20.9127-9137.2005] [Citation(s) in RCA: 54] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
The yeast SPT10 gene encodes a putative histone acetyltransferase (HAT) implicated as a global transcription regulator acting through basal promoters. Here we address the mechanism of this global regulation. Although microarray analysis confirmed that Spt10p is a global regulator, Spt10p was not detected at any of the most strongly affected genes in vivo. In contrast, the presence of Spt10p at the core histone gene promoters in vivo was confirmed. Since Spt10p activates the core histone genes, a shortage of histones could occur in spt10Delta cells, resulting in defective chromatin structure and a consequent activation of basal promoters. Consistent with this hypothesis, the spt10Delta phenotype can be rescued by extra copies of the histone genes and chromatin is poorly assembled in spt10Delta cells, as shown by irregular nucleosome spacing and reduced negative supercoiling of the endogenous 2mum plasmid. Furthermore, Spt10p binds specifically and highly cooperatively to pairs of upstream activating sequence elements in the core histone promoters [consensus sequence, (G/A)TTCCN(6)TTCNC], consistent with a direct role in histone gene regulation. No other high-affinity sites are predicted in the yeast genome. Thus, Spt10p is a sequence-specific activator of the histone genes, possessing a DNA-binding domain fused to a likely HAT domain.
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Affiliation(s)
- Peter R Eriksson
- Laboratory of Molecular Growth Regulation, National Instistute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA
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McLaughlin NB, Buhse HE. Localization by indirect immunofluorescence of tetrin, actin, and centrin to the oral apparatus and buccal cavity of the macrostomal form of Tetrahymena vorax. J Eukaryot Microbiol 2004; 51:253-7. [PMID: 15134263 DOI: 10.1111/j.1550-7408.2004.tb00556.x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We have taken advantage of the size of the macrostomal oral apparatus of Tetrahymena vorax to investigate the immunofluorescent localization of three cytoskeletal proteins--tetrin, actin, and centrin. Tetrin and actin antibodies co-localize to cross-connectives that anchor the membranelles. These antibodies also recognize the coarse filamentous reticulum, a filament associated with the undulating membrane. Actin-specific localization extends beyond the coarse filamentous reticulum-undulating membrane complex into a region called the specialized cytoplasm. A centrin antibody localizes to the fine filamentous reticulum which, along with microtubules of the oral ribs, circumscribes the cytostomal opening. Models of phagocytic contraction based on these data are presented.
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Affiliation(s)
- Neil B McLaughlin
- Department of Biological Sciences, University of Illinois at Chicago, 845 West Taylor Street, Chicago, Illinois 60607-7060, USA.
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Abstract
OBJECTIVE To compare manual and computer automated techniques for measuring QT dispersion. DESIGN Assessment of the ability of manual and automatic measurements of QT dispersion to discriminate between a normal group and two cardiac groups. SUBJECTS 12 simultaneous electrocardiogram leads were recorded from 25 healthy volunteers, 25 subjects after myocardial infarction, and 25 with cardiac arrhythmias. MAIN OUTCOME MEASURES For each subject, QT dispersion was measured as the difference between the maximum and minimum QT from all 12 leads and separately for only those leads with T amplitudes of > 100 microV and for those > 250 microV. RESULTS Manual QT dispersion (T > 100 microV) was greater (P < 0.02) in the arrhythmia patients (mean (SD), 45 (21) ms), but not the infarction patients (54 (36) ms), than in the normal subjects (39 (13) ms). There were no significant differences when all T waves were included. QT dispersion was significantly reduced by an average of 30% when T waves < 100 microV were excluded, and by 51% when those < 250 microV were excluded. Automatic techniques gave different measurements for dispersion in comparison with manual measurements. Three of the four automatic techniques detected significant differences between normal and both patient groups when no leads were excluded (P < 0.01) as well as when T waves < 100 microV were excluded (with increased significance, P < 0.002). CONCLUSIONS Measurements of QT dispersion from small T waves increases measurement variability and reduces the potential for detecting clinical differences. Automatic measurement of QT dispersion gives different results from manual measurement, but can satisfactorily discriminate between normal and abnormal groups with good quality electrocardiograms.
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Affiliation(s)
- A Murray
- Regional Medical Physics Department, Freeman Hospital, Newcastle upon Tyne, United Kingdom
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14
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Abstract
OBJECTIVE To assess differences in the accuracy of automatic QT measurement in three subject groups, and to determine the influence of T wave amplitude on these measurements. SUBJECTS Standard simultaneous 12 lead electrocardiograms were acquired from 25 patients post myocardial infarction, 25 with arrhythmias, and 25 controls. DESIGN Because there is not yet a standard automatic method for QT analysis, four different techniques were used. Manual QT measurements were used as the reference. QT was measured in two complexes by each technique in each lead, subject, and group. MAIN OUTCOME MEASURE The differences between reference and automatic QT measurements from the three subject groups were compared independently for the four techniques. The T wave amplitudes for each of the groups were also compared. RESULTS Variability of the automatic QT measurements, relative to the manual reference, in the cardiac patients was 2.1 times that in the controls (P < 0.005). Mean T wave amplitude was lower (by a factor of two) for the cardiac patients compared with the controls (P < 0.01). No simple relation between T wave amplitude and the difference between automatic and manual QT measurements was found, although the difference was 2.2 times greater for absolute T wave amplitudes of less than 0.25 mV (P < 0.001). CONCLUSIONS Automatic QT measurement techniques are less accurate in cardiac patients than in controls. Measurements from T waves with amplitudes less than 0.25 mV are less reliable.
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Affiliation(s)
- N B McLaughlin
- Regional Medical Physics Department, Freeman Hospital, Newcastle upon Tyne
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15
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Abstract
OBJECTIVE To undertake a quantitative assessment of different automatic QT measurement techniques and investigate the influence of electrocardiogram filtering and algorithm parameters. DESIGN Four methods for identifying the end of the T wave were compared: (1) threshold crossing of the T wave (TH); (2) threshold crossing of the differential of the T wave (DTH); (3) intercept of an isoelectric level and the maximum T wave slope (SI); and (4) intercept of an isoelectric level and the line passing through the peak and the point of maximum slope of the T wave (PSI). Automatic QT measurements were made by all techniques following different electrocardiogram filtering and, when appropriate, with four different isoelectric levels and with three different threshold levels. SUBJECTS 12 simultaneous standard electrocardiogram leads, containing at least two electrocardiogram complexes, were recorded from 25 healthy volunteers relaxing in a semirecumbent position. MAIN OUTCOME MEASURE Mean and standard deviation of differences between reference and automatic QT measurements were compared for the four techniques. RESULTS The mean automatic QT measurements varied by up to 62 ms, which was greater than has been found between manual measurements by experienced clinicians. Technique TH was particularly poor. The other techniques produced consistent results for most electrocardiogram filter, isoelectric level, and threshold level setting; but technique SI underestimated QT relative to the other techniques. CONCLUSION Different QT measurement techniques produced results which were influenced, to varying degrees, by filtering and technique variables. This is relevant for the inter-comparison of studies using different techniques. Technique TH, a common approach, is not recommended.
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Affiliation(s)
- N B McLaughlin
- Regional Medical Physics Department, Freeman Hospital, Newcastle upon Tyne
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Abstract
Cardiac repolarization abnormalities can be assessed from measurements of the QT duration taken from paper electrocardiogram recordings. Errors associated with determining the end of the T wave are known, but those associated with the start of the Q wave have so far been neglected. This paper quantifies the variation in manual identification of the start of the Q wave, and assesses its contribution to errors in the manual measurement of QT. A randomized study of errors in the timing of Q wave initiation from electrocardiograms plotted on paper was conducted. Four electrocardiogram leads were recorded in eight subjects relaxing in a semi-recumbent position. Manual measurements were made of the time of Q wave initiation in 512 electrocardiograms, presented with different superimposed noise, recording speed and recording gain. The greatest mean difference between four cardiologists amounted to 6.7 ms. A recording gain of 5 mm mV-1, in comparison with 10 mm mV-1, resulted in a difference in Q wave timing of 3.2 ms (P < 0.05). A further increase in gain, or the addition of noise up to 20 microV made no significant difference to Q wave measurements. Provided ECGs of at least 10 mm mV-1 are used, the effect of variation in Q determination on QT measurement is likely to be small.
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Affiliation(s)
- A Murray
- Regional Medical Physics Department, Freeman Hospital, Newcastle upon Tyne, UK
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Murray A, Allen J, Allen V, Clayton RH, McLaughlin NB, Relf GT. Simplified body-surface electrocardiographic maps with depolarization magnitude and direction. Physiol Meas 1994; 15:235-42. [PMID: 7994201 DOI: 10.1088/0967-3334/15/3/001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
A new technique is presented for extracting the magnitude and direction of ventricular depolarization at the body surface from surface electrocardiographic (ECG) map data. Bipolar electrocardiograms were obtained from 36 sites on the chest surface in five normal subjects. The direction and magnitude of depolarization as seen from the chest surface were calculated for 18 body-surface areas centred between electrode positions V1 and V6. Each area was bounded by three electrodes with an electrode spacing of 5 cm. A major depolarization component could be calculated for all triangular areas, with 48% of areas having a smaller second component. The area with the greatest magnitude in each subject had a depolarization vector pointing downwards and to the left, with an average angle to the horizontal of 55 degrees. This was consistent with an average angle of 51 degrees obtained from the subjects' 12-lead electrocardiograms. There was more variability in vector angle between adjacent areas on the right-hand side. At the V5/V6 areas, close to the cardiac apex, the vector component had an upwards orientation in all subjects, opposing the overall downward component of ventricular depolarization. The technique was able to determine local depolarization directions which were in agreement with the normal cardiac vector derived from standard electrocardiography. Reversal of the vector direction close to the cardiac apex and the collision of depolarization components from different directions could be detected. This simple form of body-surface mapping can reduce the essential features of depolarization to a single map, and provide information not directly available from a 12-lead electrocardiogram.
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Affiliation(s)
- A Murray
- Regional Medical Physics Department, Freeman Hospital, Newcastle upon Tyne, UK
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Abstract
OBJECTIVE To quantify the errors associated with manual measurement of QT intervals and to determine the source of the errors. DESIGN A randomised study of QT measurement by four cardiologists of electrocardiograms plotted on paper in presentations with different noise levels, paper speeds, amplifier gains, and with and without a second QRST complex to indicate the RR interval. SUBJECTS Four electrocardiograph leads (I, aVR, V1, V5) recorded in eight healthy people relaxing in a semirecumbent position. MAIN OUTCOME MEASURES Manual measurement of QT interval in 512 electrocardiograms (eight subjects x four leads x eight presentations x two repeats) by each of four cardiologists. RESULTS QT intervals measured were significantly longer with greater amplifier gain: by 8 ms for a doubling of gain (p < 0.005), equivalent to a doubling of T wave height. QT intervals measured were significantly longer at slower paper speeds: by 11 ms when paper speed was reduced from 100 to 50 mm/s (p < 0.001) and by 16 ms when speed was further reduced from 50 to 25 mm/s (p < 0.001). Neither the presence of noise nor the presence of a second QRST complex altered the mean QT measurements. There were consistent differences in the measurements between cardiologists, amounting to a maximum mean difference of 20 ms. CONCLUSIONS Manual measurement of QT interval is significantly affected by the paper speed used to plot the electrocardiogram and by electrocardiogram gain, and hence also T wave amplitude. Manual QT measurement also differed consistently with different cardiologists.
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Affiliation(s)
- A Murray
- Regional Medical Physics Department, Freeman Hospital, Newcastle upon Tyne
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Abstract
Seven cardiac electrophysiology stimulators from four manufacturers (Biotronik, Bloom, Digitimer and Medtronic) in common current use are reviewed. The stimulators differ in the features provided and the design adopted to achieve these features. The number of output channels ranges from one to four, the number of extra-stimuli available ranges from two to six, and these can be delivered as a variety of sequences. Some of the stimulators (Digitimer and Bloom) are modular while others (Biotronik and Medtronic 532 series) are of an integrated design comprising a single physical unit. The design of the Medtronic EP-2 has both integrated and modular characteristics. The features of the stimulators associated with input, output, control and the user interface are specifically reviewed. The features are also compared against the published recommendations of the American Heart Association. In addition, a summary of stimulator user comments from a number of electrophysiology centres is presented. All of the stimulators fulfil, or are close to fulfilling, basic electrophysiological requirements, but some provide more complex facilities such as would be required by specialist centres.
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Affiliation(s)
- N B McLaughlin
- Regional Medical Physics Department, Freeman Hospital, Newcastle upon Tyne, UK
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Stout DG, Hall JW, McLaughlin NB. In vivo plant impedance measurements and characterization of membrane electrical properties: The influence of cold acclimation. Cryobiology 1987. [DOI: 10.1016/0011-2240(87)90017-4] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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