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Durand-Smet P, Chevallier A, Colin L, Malivert A, Melogno I, Hamant O. Single-Cell Confinement Methods to Study Plant Cytoskeleton. Methods Mol Biol 2023; 2604:63-75. [PMID: 36773225 DOI: 10.1007/978-1-0716-2867-6_5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/12/2023]
Abstract
Progress in cytoskeletal research in animal systems has been accompanied by the development of single-cell systems (e.g., fibroblasts in culture). Single-cell systems exist for plant research, but the presence of a cell wall hinders the possibility to relate cytoskeleton dynamics to changes in cell shape or in mechanical stress pattern. Here we present two protocols to confine wall-less plant protoplasts in microwells with defined geometries. Either protocol might be more or less adapted to the question at hand. For instance, when using microwells made of agarose, the composition of the well can be easily modified to analyze the impact of biochemical cues. When using microwells in a stiff polymer (NOA73), protoplasts can be pressurized, and the wall of the well can be coated with cell wall components. Using both protocols, we could analyze microtubule and actin dynamics in vivo while also revealing the relative contribution of geometry and stress in their self-organization.
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Affiliation(s)
- Pauline Durand-Smet
- Laboratoire Matière et Systèmes Complexes, Unité Mixte de Recherche 7057, CNRS and Université Paris Cité, Paris cedex 13, France.
| | - Antoine Chevallier
- Laboratoire de Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, UCBL, INRAE, CNRS, Lyon Cedex 07, France
| | - Léia Colin
- Laboratoire de Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, UCBL, INRAE, CNRS, Lyon Cedex 07, France
| | - Alice Malivert
- Laboratoire de Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, UCBL, INRAE, CNRS, Lyon Cedex 07, France
| | - Isaty Melogno
- Laboratoire de Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, UCBL, INRAE, CNRS, Lyon Cedex 07, France
| | - Olivier Hamant
- Laboratoire de Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, UCBL, INRAE, CNRS, Lyon Cedex 07, France.
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Abstract
The cytoskeleton plays a key role in establishing robust cell shape. In animals, it is well established that cell shape can also influence cytoskeletal organization. Cytoskeletal proteins are well conserved between animal and plant kingdoms; nevertheless, because plant cells exhibit major structural differences to animal cells, the question arises whether the plant cytoskeleton also responds to geometrical cues. Recent numerical simulations predicted that a geometry-based rule is sufficient to explain the microtubule (MT) organization observed in cells. Due to their high flexural rigidity and persistence length of the order of a few millimeters, MTs are rigid over cellular dimensions and are thus expected to align along their long axis if constrained in specific geometries. This hypothesis remains to be tested in cellulo Here, we explore the relative contribution of geometry to the final organization of actin and MT cytoskeletons in single plant cells of Arabidopsis thaliana We show that the cytoskeleton aligns with the long axis of the cells. We find that actin organization relies on MTs but not the opposite. We develop a model of self-organizing MTs in three dimensions, which predicts the importance of MT severing, which we confirm experimentally. This work is a first step toward assessing quantitatively how cellular geometry contributes to the control of cytoskeletal organization in living plant cells.
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Affiliation(s)
- Pauline Durand-Smet
- The Sainsbury Laboratory, University of Cambridge, Cambridge CB2 1LR, United Kingdom
| | - Tamsin A Spelman
- The Sainsbury Laboratory, University of Cambridge, Cambridge CB2 1LR, United Kingdom
| | - Elliot M Meyerowitz
- Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125;
- Howard Hughes Medical Institute, California Institute of Technology, Pasadena, CA 91125
| | - Henrik Jönsson
- The Sainsbury Laboratory, University of Cambridge, Cambridge CB2 1LR, United Kingdom;
- Department of Applied Mathematics and Theoretical Physics, University of Cambridge, Cambridge CB3 0WA, United Kingdom
- Department of Astronomy and Theoretical Physics, Computational Biology and Biological Physics, Lund University, 221 00 Lund, Sweden
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Wu PH, Aroush DRB, Asnacios A, Chen WC, Dokukin ME, Doss BL, Durand-Smet P, Ekpenyong A, Guck J, Guz NV, Janmey PA, Lee JSH, Moore NM, Ott A, Poh YC, Ros R, Sander M, Sokolov I, Staunton JR, Wang N, Whyte G, Wirtz D. A comparison of methods to assess cell mechanical properties. Nat Methods 2018; 15:491-498. [PMID: 29915189 DOI: 10.1038/s41592-018-0015-1] [Citation(s) in RCA: 331] [Impact Index Per Article: 55.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2017] [Accepted: 12/11/2017] [Indexed: 01/06/2023]
Abstract
The mechanical properties of cells influence their cellular and subcellular functions, including cell adhesion, migration, polarization, and differentiation, as well as organelle organization and trafficking inside the cytoplasm. Yet reported values of cell stiffness and viscosity vary substantially, which suggests differences in how the results of different methods are obtained or analyzed by different groups. To address this issue and illustrate the complementarity of certain approaches, here we present, analyze, and critically compare measurements obtained by means of some of the most widely used methods for cell mechanics: atomic force microscopy, magnetic twisting cytometry, particle-tracking microrheology, parallel-plate rheometry, cell monolayer rheology, and optical stretching. These measurements highlight how elastic and viscous moduli of MCF-7 breast cancer cells can vary 1,000-fold and 100-fold, respectively. We discuss the sources of these variations, including the level of applied mechanical stress, the rate of deformation, the geometry of the probe, the location probed in the cell, and the extracellular microenvironment.
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Affiliation(s)
- Pei-Hsun Wu
- Department of Chemical and Biomolecular Engineering and Departments of Pathology and Oncology, The Johns Hopkins University and Johns Hopkins School of Medicine, Baltimore, MD, USA.
| | - Dikla Raz-Ben Aroush
- Institute for Medicine and Engineering, University of Pennsylvania, Philadelphia, PA, USA
| | - Atef Asnacios
- Laboratoire Matière et Systèmes Complexes, Unité Mixte de Recherche 7057, Centre National de la Recherche Scientifique (CNRS) and Université Paris-Diderot (Paris 7), Sorbonne Paris Cité, Paris, France.
| | - Wei-Chiang Chen
- Department of Chemical and Biomolecular Engineering and Departments of Pathology and Oncology, The Johns Hopkins University and Johns Hopkins School of Medicine, Baltimore, MD, USA
| | - Maxim E Dokukin
- Department of Mechanical Engineering, Tufts University, Medford, MA, USA
| | - Bryant L Doss
- Department of Physics, Arizona State University, Tempe, AZ, USA
| | - Pauline Durand-Smet
- Laboratoire Matière et Systèmes Complexes, Unité Mixte de Recherche 7057, Centre National de la Recherche Scientifique (CNRS) and Université Paris-Diderot (Paris 7), Sorbonne Paris Cité, Paris, France
| | - Andrew Ekpenyong
- Biotechnology Center, Technische Universität Dresden, Dresden, Germany
| | - Jochen Guck
- Biotechnology Center, Technische Universität Dresden, Dresden, Germany.
| | - Nataliia V Guz
- Department of Physics, Clarkson University, Potsdam, NY, USA
| | - Paul A Janmey
- Institute for Medicine and Engineering, University of Pennsylvania, Philadelphia, PA, USA.
| | - Jerry S H Lee
- Department of Chemical and Biomolecular Engineering and Departments of Pathology and Oncology, The Johns Hopkins University and Johns Hopkins School of Medicine, Baltimore, MD, USA.,Center for Strategic Scientific Initiatives, National Cancer Institute, Bethesda, MD, USA
| | - Nicole M Moore
- Department of Mechanical Science and Engineering, College of Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Albrecht Ott
- Biological Experimental Physics Department, Saarland University, Saarbruecken, Germany.
| | - Yeh-Chuin Poh
- Department of Mechanical Science and Engineering, College of Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Robert Ros
- Department of Physics, Arizona State University, Tempe, AZ, USA.
| | - Mathias Sander
- Biological Experimental Physics Department, Saarland University, Saarbruecken, Germany
| | - Igor Sokolov
- Department of Mechanical Engineering, Tufts University, Medford, MA, USA.
| | - Jack R Staunton
- Department of Physics, Arizona State University, Tempe, AZ, USA
| | - Ning Wang
- Department of Mechanical Science and Engineering, College of Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
| | - Graeme Whyte
- Biotechnology Center, Technische Universität Dresden, Dresden, Germany
| | - Denis Wirtz
- Department of Chemical and Biomolecular Engineering and Departments of Pathology and Oncology, The Johns Hopkins University and Johns Hopkins School of Medicine, Baltimore, MD, USA.
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Étienne J, Fouchard J, Mitrossilis D, Bufi N, Durand-Smet P, Asnacios A. Cells as liquid motors: mechanosensitivity emerges from collective dynamics of actomyosin cortex. Proc Natl Acad Sci U S A 2015; 112:2740-5. [PMID: 25730854 PMCID: PMC4352826 DOI: 10.1073/pnas.1417113112] [Citation(s) in RCA: 66] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
Abstract
Living cells adapt and respond actively to the mechanical properties of their environment. In addition to biochemical mechanotransduction, evidence exists for a myosin-dependent purely mechanical sensitivity to the stiffness of the surroundings at the scale of the whole cell. Using a minimal model of the dynamics of actomyosin cortex, we show that the interplay of myosin power strokes with the rapidly remodeling actin network results in a regulation of force and cell shape that adapts to the stiffness of the environment. Instantaneous changes of the environment stiffness are found to trigger an intrinsic mechanical response of the actomyosin cortex. Cortical retrograde flow resulting from actin polymerization at the edges is shown to be modulated by the stress resulting from myosin contractility, which in turn, regulates the cell length in a force-dependent manner. The model describes the maximum force that cells can exert and the maximum speed at which they can contract, which are measured experimentally. These limiting cases are found to be associated with energy dissipation phenomena, which are of the same nature as those taking place during the contraction of a whole muscle. This similarity explains the fact that single nonmuscle cell and whole-muscle contraction both follow a Hill-like force-velocity relationship.
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Affiliation(s)
- Jocelyn Étienne
- Université Grenoble Alpes and CNRS, Laboratoire Interdisciplinaire de Physique, F-38000 Grenoble, France; and
| | - Jonathan Fouchard
- Université Paris-Diderot and CNRS, Sorbonne Paris Cité, Laboratoire Matière et Systèmes Complexes, UMR 7057, Paris, France
| | - Démosthène Mitrossilis
- Université Paris-Diderot and CNRS, Sorbonne Paris Cité, Laboratoire Matière et Systèmes Complexes, UMR 7057, Paris, France
| | - Nathalie Bufi
- Université Paris-Diderot and CNRS, Sorbonne Paris Cité, Laboratoire Matière et Systèmes Complexes, UMR 7057, Paris, France
| | - Pauline Durand-Smet
- Université Paris-Diderot and CNRS, Sorbonne Paris Cité, Laboratoire Matière et Systèmes Complexes, UMR 7057, Paris, France
| | - Atef Asnacios
- Université Paris-Diderot and CNRS, Sorbonne Paris Cité, Laboratoire Matière et Systèmes Complexes, UMR 7057, Paris, France
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Abstract
We describe here the parallel plates technique which enables quantifying single-cell mechanics, either passive (cell deformability) or active (whole-cell traction forces). Based on the bending of glass microplates of calibrated stiffness, it is easy to implement on any microscope, and benefits from protocols and equipment already used in biology labs (coating of glass slides, pipette pullers, micromanipulators, etc.). We first present the principle of the technique, the design and calibration of the microplates, and various surface coatings corresponding to different cell-substrate interactions. Then we detail the specific cell preparation for the assays, and the different mechanical assays that can be carried out. Finally, we discuss the possible technical simplifications and the specificities of each mechanical protocol, as well as the possibility of extending the use of the parallel plates to investigate the mechanics of cell aggregates or tissues.
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Affiliation(s)
- Nathalie Bufi
- Laboratoire Matières et Systèmes Complexes, Université Paris-Diderot/CNRS, Sorbonne Paris Cité, Paris, France
| | - Pauline Durand-Smet
- Laboratoire Matières et Systèmes Complexes, Université Paris-Diderot/CNRS, Sorbonne Paris Cité, Paris, France
| | - Atef Asnacios
- Laboratoire Matières et Systèmes Complexes, Université Paris-Diderot/CNRS, Sorbonne Paris Cité, Paris, France
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