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Itoïz S, Mouronvalle C, Perennou M, Chailler E, Smits M, Derelle E, Metz S, Le Goïc N, Bidault A, de Montaudouin X, Arzul I, Soudant P, Chambouvet A. Co-infection of two eukaryotic pathogens within clam populations in Arcachon Bay. Front Microbiol 2024; 14:1250947. [PMID: 38260876 PMCID: PMC10800547 DOI: 10.3389/fmicb.2023.1250947] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Accepted: 11/27/2023] [Indexed: 01/24/2024] Open
Abstract
The parasitic species Perkinsus olseni (= atlanticus) (Perkinsea, Alveolata) infects a wide range of mollusc species and is responsible for mortality events and economic losses in the aquaculture industry and fisheries worldwide. Thus far, most studies conducted in this field have approached the problem from a "one parasite-one disease" perspective, notably with regards to commercially relevant clam species, while the impact of other Perkinsus species should also be considered as it could play a key role in the disease phenotype and dynamics. Co-infection of P. olseni and P. chesapeaki has already been sporadically described in Manila clam populations in Europe. Here, we describe for the first time the parasitic distribution of two Perkinsus species, P. olseni and P. chesapeaki, in individual clam organs and in five different locations across Arcachon Bay (France), using simultaneous in situ detection by quantitative PCR (qPCR) duplex methodology. We show that P. olseni single-infection largely dominated prevalence (46-84%) with high intensities of infection (7.2 to 8.5 log-nb of copies. g-1of wet tissue of Manila clam) depending on location, suggesting that infection is driven by the abiotic characteristics of stations and physiological states of the host. Conversely, single P. chesapeaki infections were observed in only two sampling stations, Ile aux Oiseaux and Gujan, with low prevalences 2 and 14%, respectively. Interestingly, the co-infection by both Perkinsus spp., ranging in prevalence from 12 to 34%, was distributed across four stations of Arcachon Bay, and was detected in one or two organs maximum. Within these co-infected organs, P. olseni largely dominated the global parasitic load. Hence, the co-infection dynamics between P. olseni and P. chesapeaki may rely on a facilitating role of P. olseni in developing a primary infection which in turn may help P. chesapeaki infect R. philippinarum as a reservoir for a preferred host. This ecological study demonstrates that the detection and quantification of both parasitic species, P. olseni and P. chesapeaki, is essential and timely in resolving cryptic infections and their consequences on individual hosts and clam populations.
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Affiliation(s)
- Sarah Itoïz
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, Plouzané, France
| | - Clara Mouronvalle
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, Plouzané, France
- EPHE, PSL Research University, UPVD, CNRS, USR CRIOBE, Perpignan, France
| | | | - Elisa Chailler
- CNRS, UMR7144 Adaptation et Diversité en Milieu Marin, Ecology of Marine Plankton (ECOMAP), Station Biologique de Roscoff SBR, Sorbonne University, Roscoff, France
| | - Morgan Smits
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, Plouzané, France
| | | | - Sebastian Metz
- CNRS, UMR7144 Adaptation et Diversité en Milieu Marin, Ecology of Marine Plankton (ECOMAP), Station Biologique de Roscoff SBR, Sorbonne University, Roscoff, France
| | - Nelly Le Goïc
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, Plouzané, France
| | | | - Xavier de Montaudouin
- Univ. Bordeaux, CNRS, Bordeaux INP, EPOC, UMR, Station Marine d’Arcachon, Arcachon, France
| | - Isabelle Arzul
- Ifremer, ASIM Adaptation et Santé des Invertébrés Marins, La Tremblade, France
| | | | - Aurélie Chambouvet
- CNRS, UMR7144 Adaptation et Diversité en Milieu Marin, Ecology of Marine Plankton (ECOMAP), Station Biologique de Roscoff SBR, Sorbonne University, Roscoff, France
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Metz S, Itoïz S, Obiol A, Derelle E, Massana R, Berney C, de Vargas C, Soudant P, Monier A, Chambouvet A. Global perspective of environmental distribution and diversity of Perkinsea (Alveolata) explored by a meta-analysis of eDNA surveys. Sci Rep 2023; 13:20111. [PMID: 37978260 PMCID: PMC10656510 DOI: 10.1038/s41598-023-47378-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2023] [Accepted: 11/13/2023] [Indexed: 11/19/2023] Open
Abstract
Perkinsea constitutes a lineage within the Alveolata eukaryotic superphylum, mainly composed of parasitic organisms. Some described species represent significant ecological and economic threats due to their invasive ability and pathogenicity, which can lead to mortality events. However, the genetic diversity of these described species is just the tip of the iceberg. Environmental surveys targeting this lineage are still scarce and mainly limited to the Northern Hemisphere. Here, we aim to conduct an in depth exploration of the Perkinsea group, uncovering the diversity across a variety of environments, including those beyond freshwater and marine ecosystems. We seek to identify and describe putative novel organisms based on their genetic signatures. In this study, we conducted an extensive analysis of a metabarcoding dataset, focusing on the V4 region of the 18S rRNA gene (the EukBank dataset), to investigate the diversity, distribution and environmental preferences of the Perkinsea. Our results reveal a remarkable diversity within the Perkinsea, with 1568 Amplicon Sequence Variants (ASVs) identified across thousands of environmental samples. Surprisingly, we showed a substantial diversity of Perkinsea within soil samples (269 ASVs), challenging the previous assumption that this group is confined to marine and freshwater environments. In addition, we revealed that a notable proportion of Perkinsea ASVs (428 ASVs) could correspond to putative new organisms, encompassing the well-established taxonomic group Perkinsidae. Finally, our study shed light on previously unveiled taxonomic groups, including the Xcellidae, and revealed their environmental distribution. These findings demonstrate that Perkinsea exhibits far greater diversity than previously detected and surprisingly extends beyond marine and freshwater environments. The meta-analysis conducted in this study has unveiled the existence of previously unknown clusters within the Perkinsea lineage, solely identified based on their genetic signatures. Considering the ecological and economic importance of described Perkinsea species, these results suggest that Perkinsea may play a significant, yet previously unrecognized, role across a wide range of environments, spanning from soil environments to the abyssal zone of the open ocean with important implications for ecosystem functioning.
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Affiliation(s)
- Sebastian Metz
- Sorbonne Université, CNRS, UMR7144 Adaptation et Diversité en Milieu Marin, Ecology of Marine Plankton (ECOMAP), Sorbonne Universités, Station Biologique de Roscoff, Place Georges Teissier, 29680, Roscoff, France.
- Department of Archaeology, University of York, York, UK.
| | - Sarah Itoïz
- CNRS, IRD, Ifremer, LEMAR, Univ Brest, Plouzané, France
- Rivages Pro Tech, 2, Allée Théodore Monod, 64210, Bidart, France
| | - Aleix Obiol
- Department of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM-CSIC), Barcelona, Spain
| | | | - Ramon Massana
- Department of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM-CSIC), Barcelona, Spain
| | - Cédric Berney
- Sorbonne Université, CNRS, UMR7144 Adaptation et Diversité en Milieu Marin, Ecology of Marine Plankton (ECOMAP), Sorbonne Universités, Station Biologique de Roscoff, Place Georges Teissier, 29680, Roscoff, France
| | - Colomban de Vargas
- Sorbonne Université, CNRS, UMR7144 Adaptation et Diversité en Milieu Marin, Ecology of Marine Plankton (ECOMAP), Sorbonne Universités, Station Biologique de Roscoff, Place Georges Teissier, 29680, Roscoff, France
| | | | - Adam Monier
- Living Systems Institute, University of Exeter, Stocker Road, Exeter, UK
| | - Aurélie Chambouvet
- Sorbonne Université, CNRS, UMR7144 Adaptation et Diversité en Milieu Marin, Ecology of Marine Plankton (ECOMAP), Sorbonne Universités, Station Biologique de Roscoff, Place Georges Teissier, 29680, Roscoff, France.
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Itoïz S, Metz S, Derelle E, Reñé A, Garcés E, Bass D, Soudant P, Chambouvet A. Emerging Parasitic Protists: The Case of Perkinsea. Front Microbiol 2022; 12:735815. [PMID: 35095782 PMCID: PMC8792838 DOI: 10.3389/fmicb.2021.735815] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2021] [Accepted: 11/25/2021] [Indexed: 11/13/2022] Open
Abstract
The last century has witnessed an increasing rate of new disease emergence across the world leading to permanent loss of biodiversity. Perkinsea is a microeukaryotic parasitic phylum composed of four main lineages of parasitic protists with broad host ranges. Some of them represent major ecological and economical threats because of their geographically invasive ability and pathogenicity (leading to mortality events). In marine environments, three lineages are currently described, the Parviluciferaceae, the Perkinsidae, and the Xcellidae, infecting, respectively, dinoflagellates, mollusks, and fish. In contrast, only one lineage is officially described in freshwater environments: the severe Perkinsea infectious agent infecting frog tadpoles. The advent of high-throughput sequencing methods, mainly based on 18S rRNA assays, showed that Perkinsea is far more diverse than the previously four described lineages especially in freshwater environments. Indeed, some lineages could be parasites of green microalgae, but a formal nature of the interaction needs to be explored. Hence, to date, most of the newly described aquatic clusters are only defined by their environmental sequences and are still not (yet) associated with any host. The unveiling of this microbial black box presents a multitude of research challenges to understand their ecological roles and ultimately to prevent their most negative impacts. This review summarizes the biological and ecological traits of Perkinsea-their diversity, life cycle, host preferences, pathogenicity, and highlights their diversity and ubiquity in association with a wide range of hosts.
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Affiliation(s)
- Sarah Itoïz
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, Plouzané, France
| | | | | | - Albert Reñé
- Departament de Biologia Marina i Oceanografia, Institut de Ciències del Mar, CSIC, Pg. Marítim de la Barceloneta, Barcelona, Spain
| | - Esther Garcés
- Departament de Biologia Marina i Oceanografia, Institut de Ciències del Mar, CSIC, Pg. Marítim de la Barceloneta, Barcelona, Spain
| | - David Bass
- Centre for Environment, Fisheries and Aquaculture Science (Cefas), Weymouth, United Kingdom
- Department of Life Sciences, The Natural History Museum, London, United Kingdom
- Biosciences, University of Exeter, Exeter, United Kingdom
| | | | - Aurélie Chambouvet
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, Plouzané, France
- Sorbonne Université, CNRS, UMR 7144 Adaptation et Diversité en Milieu Marin, Ecology of Marine Plankton (ECOMAP), Station Biologique de Roscoff SBR, Roscoff, France
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Itoïz S, Perennou M, Mouronvalle C, Derelle E, Le Goïc N, Bidault A, de Montaudouin X, Arzul I, Soudant P, Chambouvet A. Development of duplex TaqMan-based real-time PCR assay for the simultaneous detection of Perkinsus olseni and P. chesapeaki in host Manila clam tissue samples. J Invertebr Pathol 2021; 184:107603. [PMID: 33971219 DOI: 10.1016/j.jip.2021.107603] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2020] [Revised: 04/13/2021] [Accepted: 04/25/2021] [Indexed: 11/28/2022]
Abstract
The aetiological agent Perkinsus olseni is globally recognised as a major threat for shellfish production considering its wide geographical distribution across Asia, Europe, Australia and South America. Another species, Perkinsus chesapeaki, which has never been known to be associated with significant mortality events, was recently detected along French coasts infecting clam populations sporadically in association with P. olseni. Identifying potential cryptic infections affecting Ruditapes philippinarum is essential to develop appropriate host resource management strategies. Here, we developed a molecular method based on duplex real-time quantitative PCR for the simultaneous detection of these two parasites, P. olseni and P. chesapeaki, in the different clam tissues: gills, digestive gland, foot, mantle, adductor muscle and the rest of the soft body. We firstly checked the presence of possible PCR inhibitors in host tissue samples. The qPCR reactions were inhibited depending on the nature of the host organ. The mantle and the rest of the soft body have a high inhibitory effect from threshold of host gDNA concentration of 2 ng.µL-1, the adductor muscle and the foot have an intermediate inhibition of 5 ng.µL-1, and the gills and digestive gland do not show any inhibition of the qPCR reaction even at the highest host gDNA concentration of 20 ng.µL-1. Then, using the gills as a template, the suitability of the molecular technique was checked in comparison with the Ray's Fluid Thioglycolate Medium methodology recommended by the World Organisation for Animal Health. The duplex qPCR method brought new insights and unveiled cryptic infections as the co-occurrence of P. olseni and P. chesapeaki from in situ tissue samples in contrast to the RFTM diagnosis. The development of this duplex qPCR method is a fundamental work to monitor in situ co-infections that will lead to optimised resource management and conservation strategies to deal with emerging diseases.
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Affiliation(s)
- Sarah Itoïz
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, F-29280 Plouzané, France
| | - Morgan Perennou
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, F-29280 Plouzané, France
| | - Clara Mouronvalle
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, F-29280 Plouzané, France; EPHE, PSL Research University, UPVD, CNRS, USR 3278 CRIOBE, Perpignan F-66360, France
| | - Evelyne Derelle
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, F-29280 Plouzané, France
| | - Nelly Le Goïc
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, F-29280 Plouzané, France
| | - Adeline Bidault
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, F-29280 Plouzané, France
| | - Xavier de Montaudouin
- Univ. Bordeaux, CNRS, EPOC, EPHE, UMR 5805, Station Marine, F-33120 Arcachon, France
| | - Isabelle Arzul
- IFREMER, Laboratory of Genetics and Pathology, Av de Mus de Loup-17390, La Tremblade, France
| | - Philippe Soudant
- Univ Brest, CNRS, IRD, Ifremer, LEMAR, F-29280 Plouzané, France.
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Chambouvet A, Smilansky V, Jirků M, Isidoro-Ayza M, Itoïz S, Derelle E, Monier A, Gower DJ, Wilkinson M, Yabsley MJ, Lukeš J, Richards TA. Diverse alveolate infections of tadpoles, a new threat to frogs? PLoS Pathog 2020; 16:e1008107. [PMID: 32053700 PMCID: PMC7017987 DOI: 10.1371/journal.ppat.1008107] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
Affiliation(s)
| | - Vanessa Smilansky
- Biosciences, Living Systems Institute, University of Exeter, Exeter, United Kingdom
| | - Miloslav Jirků
- Institute of Parasitology, Biology Centre, Czech Academy of Sciences, České Budějovice (Budweis), Czech Republic
| | - Marcos Isidoro-Ayza
- Department of Pediatrics, School of Medicine and Public Health, University of Wisconsin, Madison, Wisconsin, United States of America
| | - Sarah Itoïz
- CNRS, Univ Brest, IRD, Ifremer, LEMAR, Plouzané, France
| | | | - Adam Monier
- Biosciences, Living Systems Institute, University of Exeter, Exeter, United Kingdom
| | - David J. Gower
- Department of Life Sciences, Natural History Museum, London, United Kingdom
| | - Mark Wilkinson
- Department of Life Sciences, Natural History Museum, London, United Kingdom
| | - Michael J. Yabsley
- Warnell School of Forestry and Natural Resources and the Southeastern Cooperative Wildlife Disease Study, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, Georgia, United States of America
| | - Julius Lukeš
- Institute of Parasitology, Biology Centre, Czech Academy of Sciences, České Budějovice (Budweis), Czech Republic
- Faculty of Sciences, University of South Bohemia, České Budějovice (Budweis), Czech Republic
| | - Thomas A. Richards
- Biosciences, Living Systems Institute, University of Exeter, Exeter, United Kingdom
- Department of Zoology, University of Oxford, Oxford, United Kingdom
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Chambouvet A, Monier A, Maguire F, Itoïz S, del Campo J, Elies P, Edvardsen B, Eikreim W, Richards TA. Intracellular Infection of Diverse Diatoms by an Evolutionary Distinct Relative of the Fungi. Curr Biol 2019; 29:4093-4101.e4. [DOI: 10.1016/j.cub.2019.09.074] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2019] [Revised: 07/12/2019] [Accepted: 09/30/2019] [Indexed: 11/29/2022]
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