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Boisard J, Duvernois-Berthet E, Duval L, Schrével J, Guillou L, Labat A, Le Panse S, Prensier G, Ponger L, Florent I. Marine gregarine genomes reveal the breadth of apicomplexan diversity with a partially conserved glideosome machinery. BMC Genomics 2022; 23:485. [PMID: 35780080 PMCID: PMC9250747 DOI: 10.1186/s12864-022-08700-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Accepted: 06/13/2022] [Indexed: 12/29/2022] Open
Abstract
Our current view of the evolutionary history, coding and adaptive capacities of Apicomplexa, protozoan parasites of a wide range of metazoan, is currently strongly biased toward species infecting humans, as data on early diverging apicomplexan lineages infecting invertebrates is extremely limited. Here, we characterized the genome of the marine eugregarine Porospora gigantea, intestinal parasite of Lobsters, remarkable for the macroscopic size of its vegetative feeding forms (trophozoites) and its gliding speed, the fastest so far recorded for Apicomplexa. Two highly syntenic genomes named A and B were assembled. Similar in size (~ 9 Mb) and coding capacity (~ 5300 genes), A and B genomes are 10.8% divergent at the nucleotide level, corresponding to 16-38 My in divergent time. Orthogroup analysis across 25 (proto)Apicomplexa species, including Gregarina niphandrodes, showed that A and B are highly divergent from all other known apicomplexan species, revealing an unexpected breadth of diversity. Phylogenetically these two species branch sisters to Cephaloidophoroidea, and thus expand the known crustacean gregarine superfamily. The genomes were mined for genes encoding proteins necessary for gliding, a key feature of apicomplexans parasites, currently studied through the molecular model called glideosome. Sequence analysis shows that actin-related proteins and regulatory factors are strongly conserved within apicomplexans. In contrast, the predicted protein sequences of core glideosome proteins and adhesion proteins are highly variable among apicomplexan lineages, especially in gregarines. These results confirm the importance of studying gregarines to widen our biological and evolutionary view of apicomplexan species diversity, and to deepen our understanding of the molecular bases of key functions such as gliding, well known to allow access to the intracellular parasitic lifestyle in Apicomplexa.
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Affiliation(s)
- Julie Boisard
- Département Adaptations du Vivant (AVIV), Molécules de Communication et Adaptation des Microorganismes (MCAM, UMR 7245 CNRS), Muséum National d'Histoire Naturelle, CNRS, CP 52, 57 rue Cuvier, 75231 Cedex 05, Paris, France. .,Département Adaptations du Vivant (AVIV), Structure et instabilité des génomes (STRING UMR 7196 CNRS/INSERM U1154), Muséum National d'Histoire Naturelle, CNRS, INSERM, CP 26, 57 rue Cuvier, 75231 Cedex 05, Paris, France. .,Department of Biology, Lund University, Sölvegatan 35, 223 62, Lund, Sweden.
| | - Evelyne Duvernois-Berthet
- Département Adaptations du Vivant (AVIV), Physiologie Moléculaire et Adaptation (PhyMA UMR 7221 CNRS), Muséum national d'Histoire naturelle, CNRS, CP 32, 7 rue Cuvier, 75005, Paris, France
| | - Linda Duval
- Département Adaptations du Vivant (AVIV), Molécules de Communication et Adaptation des Microorganismes (MCAM, UMR 7245 CNRS), Muséum National d'Histoire Naturelle, CNRS, CP 52, 57 rue Cuvier, 75231 Cedex 05, Paris, France
| | - Joseph Schrével
- Département Adaptations du Vivant (AVIV), Molécules de Communication et Adaptation des Microorganismes (MCAM, UMR 7245 CNRS), Muséum National d'Histoire Naturelle, CNRS, CP 52, 57 rue Cuvier, 75231 Cedex 05, Paris, France
| | - Laure Guillou
- CNRS, UMR7144 Adaptation et Diversité en Milieu Marin, Ecology of Marine Plankton (ECOMAP), Station Biologique de Roscoff SBR, Sorbonne Université, 29680, Roscoff, France
| | - Amandine Labat
- Département Adaptations du Vivant (AVIV), Molécules de Communication et Adaptation des Microorganismes (MCAM, UMR 7245 CNRS), Muséum National d'Histoire Naturelle, CNRS, CP 52, 57 rue Cuvier, 75231 Cedex 05, Paris, France
| | - Sophie Le Panse
- Plateforme d'Imagerie Merimage, FR2424, Centre National de la Recherche Scientifique, Station Biologique de Roscoff, 29680, Roscoff, France
| | - Gérard Prensier
- Cell biology and Electron Microscopy Laboratory, François Rabelais University, 10 Boulevard Tonnellé, 3223 Cedex, Tours, BP, France
| | - Loïc Ponger
- Département Adaptations du Vivant (AVIV), Structure et instabilité des génomes (STRING UMR 7196 CNRS/INSERM U1154), Muséum National d'Histoire Naturelle, CNRS, INSERM, CP 26, 57 rue Cuvier, 75231 Cedex 05, Paris, France.
| | - Isabelle Florent
- Département Adaptations du Vivant (AVIV), Molécules de Communication et Adaptation des Microorganismes (MCAM, UMR 7245 CNRS), Muséum National d'Histoire Naturelle, CNRS, CP 52, 57 rue Cuvier, 75231 Cedex 05, Paris, France.
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Rabillé H, Torode TA, Tesson B, Le Bail A, Billoud B, Rolland E, Le Panse S, Jam M, Charrier B. Alginates along the filament of the brown alga Ectocarpus help cells cope with stress. Sci Rep 2019; 9:12956. [PMID: 31506545 PMCID: PMC6736953 DOI: 10.1038/s41598-019-49427-z] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2019] [Accepted: 08/23/2019] [Indexed: 11/29/2022] Open
Abstract
Ectocarpus is a filamentous brown alga, which cell wall is composed mainly of alginates and fucans (80%), two non-crystalline polysaccharide classes. Alginates are linear chains of epimers of 1,4-linked uronic acids, β-D-mannuronic acid (M) and α-L-guluronic acid (G). Previous physico-chemical studies showed that G-rich alginate gels are stiffer than M-rich alginate gels when prepared in vitro with calcium. In order to assess the possible role of alginates in Ectocarpus, we first immunolocalised M-rich or G-rich alginates using specific monoclonal antibodies along the filament. As a second step, we calculated the tensile stress experienced by the cell wall along the filament, and varied it with hypertonic or hypotonic solutions. As a third step, we measured the stiffness of the cell along the filament, using cell deformation measurements and atomic force microscopy. Overlapping of the three sets of data allowed to show that alginates co-localise with the stiffest and most stressed areas of the filament, namely the dome of the apical cell and the shanks of the central round cells. In addition, no major distinction between M-rich and G-rich alginate spatial patterns could be observed. Altogether, these results support that both M-rich and G-rich alginates play similar roles in stiffening the cell wall where the tensile stress is high and exposes cells to bursting, and that these roles are independent from cell growth and differentiation.
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Affiliation(s)
- Hervé Rabillé
- CNRS, Sorbonne Université, Laboratoire de Biologie Intégrative des Modèles Marins LBI2M, Station Biologique, Roscoff, France
| | - Thomas A Torode
- The Sainsbury Laboratory, University of Cambridge, Bateman Street, Cambridge, United Kingdom
| | - Benoit Tesson
- Marine Biology Research Division, Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA
| | - Aude Le Bail
- CNRS, Sorbonne Université, Laboratoire de Biologie Intégrative des Modèles Marins LBI2M, Station Biologique, Roscoff, France
- Department of Cell Biology, Friedrich-Alexander-University of Erlangen-Nürnberg, Erlangen, Germany
| | - Bernard Billoud
- CNRS, Sorbonne Université, Laboratoire de Biologie Intégrative des Modèles Marins LBI2M, Station Biologique, Roscoff, France
| | - Elodie Rolland
- CNRS, Sorbonne Université, Laboratoire de Biologie Intégrative des Modèles Marins LBI2M, Station Biologique, Roscoff, France
| | - Sophie Le Panse
- Platform Merimage, FR 2424, CNRS, Station Biologique, Roscoff, France
| | - Murielle Jam
- Marine Glycobiology team, UMR8227, CNRS-UPMC, Station Biologique, Roscoff, France
| | - Bénédicte Charrier
- CNRS, Sorbonne Université, Laboratoire de Biologie Intégrative des Modèles Marins LBI2M, Station Biologique, Roscoff, France.
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Barbeyron T, Zonta E, Le Panse S, Duchaud E, Michel G. Alteromonas fortis sp. nov., a non-flagellated bacterium specialized in the degradation of iota-carrageenan, and emended description of the genus Alteromonas. Int J Syst Evol Microbiol 2019; 69:2514-2521. [DOI: 10.1099/ijsem.0.003533] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Affiliation(s)
- Tristan Barbeyron
- 1CNRS / Sorbonne Université, UMR 8227 Integrative Biology of Marine Models (LBI2M), research group of Marine Glycobiology, Station Biologique de Roscoff (SBR), 29680 Roscoff, Brittany, France
| | - Erwann Zonta
- 1CNRS / Sorbonne Université, UMR 8227 Integrative Biology of Marine Models (LBI2M), research group of Marine Glycobiology, Station Biologique de Roscoff (SBR), 29680 Roscoff, Brittany, France
| | - Sophie Le Panse
- 2CNRS / Sorbonne Université, FR 2424 Research and training in marine biology, Merimage platform, Station Biologique de Roscoff (SBR), 29680 Roscoff, Brittany, France
| | - Eric Duchaud
- 3INRA VIM-UR0892 Molecular Immunology and Virology, research group of Infection and Immunity of Fish, Research Center of Jouy-en-Josas, F-78352 Jouy-en-Josas, Ile-de-France, France
| | - Gurvan Michel
- 1CNRS / Sorbonne Université, UMR 8227 Integrative Biology of Marine Models (LBI2M), research group of Marine Glycobiology, Station Biologique de Roscoff (SBR), 29680 Roscoff, Brittany, France
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Rabillé H, Billoud B, Tesson B, Le Panse S, Rolland É, Charrier B. The brown algal mode of tip growth: Keeping stress under control. PLoS Biol 2019; 17:e2005258. [PMID: 30640903 PMCID: PMC6347293 DOI: 10.1371/journal.pbio.2005258] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2018] [Revised: 01/25/2019] [Accepted: 12/20/2018] [Indexed: 01/09/2023] Open
Abstract
Tip growth has been studied in pollen tubes, root hairs, and fungal and oomycete hyphae and is the most widely distributed unidirectional growth process on the planet. It ensures spatial colonization, nutrient predation, fertilization, and symbiosis with growth speeds of up to 800 μm h-1. Although turgor-driven growth is intuitively conceivable, a closer examination of the physical processes at work in tip growth raises a paradox: growth occurs where biophysical forces are low, because of the increase in curvature in the tip. All tip-growing cells studied so far rely on the modulation of cell wall extensibility via the polarized excretion of cell wall-loosening compounds at the tip. Here, we used a series of quantitative measurements at the cellular level and a biophysical simulation approach to show that the brown alga Ectocarpus has an original tip-growth mechanism. In this alga, the establishment of a steep gradient in cell wall thickness can compensate for the variation in tip curvature, thereby modulating wall stress within the tip cell. Bootstrap analyses support the robustness of the process, and experiments with fluorescence recovery after photobleaching (FRAP) confirmed the active vesicle trafficking in the shanks of the apical cell, as inferred from the model. In response to auxin, biophysical measurements change in agreement with the model. Although we cannot strictly exclude the involvement of a gradient in mechanical properties in Ectocarpus morphogenesis, the viscoplastic model of cell wall mechanics strongly suggests that brown algae have evolved an alternative strategy of tip growth. This strategy is largely based on the control of cell wall thickness rather than fluctuations in cell wall mechanical properties.
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Affiliation(s)
- Hervé Rabillé
- CNRS, Sorbonne Université, Morphogenesis of Macro Algae, UMR8227, Station Biologique, Roscoff, France
| | - Bernard Billoud
- CNRS, Sorbonne Université, Morphogenesis of Macro Algae, UMR8227, Station Biologique, Roscoff, France
| | - Benoit Tesson
- SCRIPPS Institution of Oceanography, University of California, San Diego, San Diego, California, United States of America
| | - Sophie Le Panse
- MerImage platform, FR2424, CNRS, Sorbonne Université, Station Biologique, Roscoff, France
| | - Élodie Rolland
- CNRS, Sorbonne Université, Morphogenesis of Macro Algae, UMR8227, Station Biologique, Roscoff, France
| | - Bénédicte Charrier
- CNRS, Sorbonne Université, Morphogenesis of Macro Algae, UMR8227, Station Biologique, Roscoff, France
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Moundoyi H, Demouy J, Le Panse S, Morales J, Sarels B, Cormier P. Toward Multiscale Modeling of Molecular and Biochemical Events Occurring at Fertilization Time in Sea Urchins. Results Probl Cell Differ 2018; 65:69-89. [DOI: 10.1007/978-3-319-92486-1_5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/07/2023]
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Labreuche Y, Chenivesse S, Jeudy A, Le Panse S, Boulo V, Ansquer D, Pagès S, Givaudan A, Czjzek M, Le Roux F. Nigritoxin is a bacterial toxin for crustaceans and insects. Nat Commun 2017; 8:1248. [PMID: 29093459 PMCID: PMC5665878 DOI: 10.1038/s41467-017-01445-z] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2017] [Accepted: 09/14/2017] [Indexed: 11/29/2022] Open
Abstract
The Tetraconata (Pancrustacea) concept proposes that insects are more closely related to aquatic crustaceans than to terrestrial centipedes or millipedes. The question therefore arises whether insects have kept crustacean-specific genetic traits that could be targeted by specific toxins. Here we show that a toxin (nigritoxin), originally identified in a bacterial pathogen of shrimp, is lethal for organisms within the Tetraconata and non-toxic to other animals. X-ray crystallography reveals that nigritoxin possesses a new protein fold of the α/β type. The nigritoxin N-terminal domain is essential for cellular translocation and likely encodes specificity for Tetraconata. Once internalized by eukaryotic cells, nigritoxin induces apoptotic cell death through structural features that are localized in the C-terminal domain of the protein. We propose that nigritoxin will be an effective means to identify a Tetraconata evolutionarily conserved pathway and speculate that nigritoxin holds promise as an insecticidal protein. The Tetraconata concept suggests that insects and crustaceans may share evolutionarily conserved pathways. Here, the authors describe the animal tropism and structure-function relationship of nigritoxin, showing that this protein is lethal for insects and crustaceans but harmless to other animals.
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Affiliation(s)
- Yannick Labreuche
- Ifremer, Unité Physiologie Fonctionnelle des Organismes Marins, ZI de la Pointe du Diable, CS 10070, F-29280, Plouzané, France.,Sorbonne Universités, UPMC Paris 06, CNRS, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, CS 90074, F-29688, Roscoff cedex, France
| | - Sabine Chenivesse
- Sorbonne Universités, UPMC Paris 06, CNRS, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, CS 90074, F-29688, Roscoff cedex, France
| | - Alexandra Jeudy
- Sorbonne Universités, UPMC Paris 06, CNRS, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, CS 90074, F-29688, Roscoff cedex, France
| | - Sophie Le Panse
- CNRS, FR 2424, Plateforme Merimage, Station Biologique de Roscoff, Place Georges Teissier, CS 90074, F-29688, Roscoff cedex, France
| | - Viviane Boulo
- Département Lagons, Ecosystèmes et Aquaculture Durables en Nouvelle-Calédonie, IFREMER, BP 2059, 98846, Nouméa cedex, New Caledonia
| | - Dominique Ansquer
- Département Lagons, Ecosystèmes et Aquaculture Durables en Nouvelle-Calédonie, IFREMER, BP 2059, 98846, Nouméa cedex, New Caledonia
| | - Sylvie Pagès
- UMR 1333 "Diversité, Génomes & Interactions Microorganismes - Insectes" Université Montpellier 2 - Place Eugène Bataillon, 34095, Montpellier cedex 5, France
| | - Alain Givaudan
- UMR 1333 "Diversité, Génomes & Interactions Microorganismes - Insectes" Université Montpellier 2 - Place Eugène Bataillon, 34095, Montpellier cedex 5, France
| | - Mirjam Czjzek
- Sorbonne Universités, UPMC Paris 06, CNRS, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, CS 90074, F-29688, Roscoff cedex, France
| | - Frédérique Le Roux
- Ifremer, Unité Physiologie Fonctionnelle des Organismes Marins, ZI de la Pointe du Diable, CS 10070, F-29280, Plouzané, France. .,Sorbonne Universités, UPMC Paris 06, CNRS, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, CS 90074, F-29688, Roscoff cedex, France.
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Sauvadet AL, Lynn DH, Roussel EG, Le Panse S, Bigeard E, Schrével J, Guillou L. Redescription and phylogenetic analyses of Durchoniella spp. (Ciliophora, Astomatida) associated with the polychaete Cirriformia tentaculata (Montagu, 1808). Eur J Protistol 2017; 61:265-277. [DOI: 10.1016/j.ejop.2017.06.007] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2017] [Revised: 05/31/2017] [Accepted: 06/22/2017] [Indexed: 01/12/2023]
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Simon N, Foulon E, Grulois D, Six C, Desdevises Y, Latimier M, Le Gall F, Tragin M, Houdan A, Derelle E, Jouenne F, Marie D, Le Panse S, Vaulot D, Marin B. Revision of the Genus Micromonas Manton et Parke (Chlorophyta, Mamiellophyceae), of the Type Species M. pusilla (Butcher) Manton & Parke and of the Species M. commoda van Baren, Bachy and Worden and Description of Two New Species Based on the Genetic and Phenotypic Characterization of Cultured Isolates. Protist 2017; 168:612-635. [PMID: 29028580 DOI: 10.1016/j.protis.2017.09.002] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2016] [Revised: 08/31/2017] [Accepted: 09/06/2017] [Indexed: 11/30/2022]
Abstract
The green picoalgal genus Micromonas is broadly distributed in estuaries, coastal marine habitats and open oceans, from the equator to the poles. Phylogenetic, ecological and genomic analyses of culture strains and natural populations have suggested that this cosmopolitan genus is composed of several cryptic species corresponding to genetic lineages. We performed a detailed analysis of variations in morphology, pigment content, and sequences of the nuclear-encoded small-subunit rRNA gene and the second internal transcribed spacer (ITS2) from strains isolated worldwide. A new morphological feature of the genus, the presence of tip hairs at the extremity of the hair point, was discovered and subtle differences in hair point length were detected between clades. Clear non-homoplasious synapomorphies were identified in the small-subunit rRNA gene and ITS2 spacer sequences of five genetic lineages. These findings lead us to provide emended descriptions of the genus Micromonas, of the type species M. pusilla, and of the recently described species M. commoda, as well as to describe 2 new species, M. bravo and M. polaris. By clarifying the status of the genetic lineages identified within Micromonas, these formal descriptions will facilitate further interpretations of large-scale analyses investigating ecological trends in time and space for this widespread picoplankter.
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Affiliation(s)
- Nathalie Simon
- Sorbonne Universités, Université Pierre et Marie Curie - Paris 06 and Centre National de la recherche Scientifique (CNRS), UMR 7144, Laboratoire Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, Place Georges Teissier, 29680 Roscoff, France.
| | - Elodie Foulon
- Sorbonne Universités, Université Pierre et Marie Curie - Paris 06 and Centre National de la recherche Scientifique (CNRS), UMR 7144, Laboratoire Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, Place Georges Teissier, 29680 Roscoff, France
| | - Daphné Grulois
- Sorbonne Universités, Université Pierre et Marie Curie - Paris 06 and Centre National de la recherche Scientifique (CNRS), UMR 7144, Laboratoire Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, Place Georges Teissier, 29680 Roscoff, France
| | - Christophe Six
- Sorbonne Universités, Université Pierre et Marie Curie - Paris 06 and Centre National de la recherche Scientifique (CNRS), UMR 7144, Laboratoire Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, Place Georges Teissier, 29680 Roscoff, France
| | - Yves Desdevises
- Sorbonne Universités, Université Pierre et Marie Curie - Paris 06 and Centre National de la recherche Scientifique (CNRS), UMR 7232, BIOM, Observatoire Océanologique, 66650 Banyuls/Mer, France
| | - Marie Latimier
- Sorbonne Universités, Université Pierre et Marie Curie - Paris 06 and Centre National de la recherche Scientifique (CNRS), UMR 7144, Laboratoire Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, Place Georges Teissier, 29680 Roscoff, France
| | - Florence Le Gall
- Sorbonne Universités, Université Pierre et Marie Curie - Paris 06 and Centre National de la recherche Scientifique (CNRS), UMR 7144, Laboratoire Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, Place Georges Teissier, 29680 Roscoff, France
| | - Margot Tragin
- Sorbonne Universités, Université Pierre et Marie Curie - Paris 06 and Centre National de la recherche Scientifique (CNRS), UMR 7144, Laboratoire Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, Place Georges Teissier, 29680 Roscoff, France
| | - Aude Houdan
- Sorbonne Universités, Université Pierre et Marie Curie - Paris 06 and Centre National de la recherche Scientifique (CNRS), UMR 7144, Laboratoire Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, Place Georges Teissier, 29680 Roscoff, France
| | - Evelyne Derelle
- Sorbonne Universités, Université Pierre et Marie Curie - Paris 06 and Centre National de la recherche Scientifique (CNRS), UMR 7232, BIOM, Observatoire Océanologique, 66650 Banyuls/Mer, France
| | - Fabien Jouenne
- Sorbonne Universités, Université Pierre et Marie Curie - Paris 06 and Centre National de la recherche Scientifique (CNRS), UMR 7144, Laboratoire Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, Place Georges Teissier, 29680 Roscoff, France
| | - Dominique Marie
- Sorbonne Universités, Université Pierre et Marie Curie - Paris 06 and Centre National de la recherche Scientifique (CNRS), UMR 7144, Laboratoire Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, Place Georges Teissier, 29680 Roscoff, France
| | - Sophie Le Panse
- Sorbonne Universités, Université Pierre et Marie Curie - Paris 06 and Centre National de la recherche Scientifique (CNRS), FR2424, Imaging Core Facility, Station Biologique de Roscoff, Place Georges Teissier, 29680 Roscoff, France
| | - Daniel Vaulot
- Sorbonne Universités, Université Pierre et Marie Curie - Paris 06 and Centre National de la recherche Scientifique (CNRS), UMR 7144, Laboratoire Adaptation et Diversité en Milieu Marin, Station Biologique de Roscoff, Place Georges Teissier, 29680 Roscoff, France
| | - Birger Marin
- Botanisches Institut, Biozentrum Köln, Universität zu Köln, Zülpicher Str. 47b, 50674 Köln, Germany
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Nguyen Van Long N, Vasseur V, Coroller L, Dantigny P, Le Panse S, Weill A, Mounier J, Rigalma K. Temperature, water activity and pH during conidia production affect the physiological state and germination time of Penicillium species. Int J Food Microbiol 2016; 241:151-160. [PMID: 27780083 DOI: 10.1016/j.ijfoodmicro.2016.10.022] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2016] [Revised: 09/28/2016] [Accepted: 10/17/2016] [Indexed: 11/25/2022]
Abstract
Conidial germination and mycelial growth are generally studied with conidia produced under optimal conditions to increase conidial yield. Nonetheless, the physiological state of such conidia most likely differs from those involved in spoilage of naturally contaminated food. The present study aimed at investigating the impact of temperature, pH and water activity (aw) during production of conidia on the germination parameters and compatible solutes of conidia of Penicillium roqueforti and Penicillium expansum. Low temperature (5°C) and reduced aw (0.900 aw) during sporulation significantly reduced conidial germination times whereas the pH of the sporulation medium only had a slight effect at the tested values (2.5, 8.0). Conidia of P. roqueforti produced at 5°C germinated up to 45h earlier than those produced at 20°C. Conidia of P. roqueforti and P. expansum produced at 0.900 aw germinated respectively up to 8h and 3h earlier than conidia produced at 0.980 aw. Furthermore, trehalose and mannitol assessments suggested that earlier germination might be related to delayed conidial maturation even though no ultra-structural modifications were observed by transmission electron microscopy. Taken together, these results highlight the importance of considering environmental conditions during sporulation in mycological studies. The physiological state of fungal conidia should be taken into account to design challenge tests or predictive mycology studies. This knowledge may also be of interest to improve the germination capacity of fungal cultures commonly used in fermented foods.
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Affiliation(s)
- Nicolas Nguyen Van Long
- Université de Brest, EA 3882, Laboratoire Universitaire de Biodiversité et Ecologie Microbienne, IBSAM, ESIAB, Technopôle Brest-Iroise, 29280 Plouzané, France
| | - Valérie Vasseur
- Université de Brest, EA 3882, Laboratoire Universitaire de Biodiversité et Ecologie Microbienne, IBSAM, ESIAB, Technopôle Brest-Iroise, 29280 Plouzané, France
| | - Louis Coroller
- Université de Brest, EA 3882, Laboratoire Universitaire de Biodiversité et Ecologie Microbienne, IBSAM, UMT Spore Risk, IUT Quimper, 6 rue de l'Université, 29334 Quimper, France
| | - Philippe Dantigny
- Université de Brest, EA 3882, Laboratoire Universitaire de Biodiversité et Ecologie Microbienne, IBSAM, ESIAB, Technopôle Brest-Iroise, 29280 Plouzané, France
| | - Sophie Le Panse
- Plateforme Merimage, Station Biologique de Roscoff, CNRS-UPMC, Place Georges Teissier, CS90074, 29688 Roscoff, Cedex, France
| | - Amélie Weill
- Université de Brest, EA 3882, Laboratoire Universitaire de Biodiversité et Ecologie Microbienne, IBSAM, ESIAB, Technopôle Brest-Iroise, 29280 Plouzané, France
| | - Jérôme Mounier
- Université de Brest, EA 3882, Laboratoire Universitaire de Biodiversité et Ecologie Microbienne, IBSAM, ESIAB, Technopôle Brest-Iroise, 29280 Plouzané, France
| | - Karim Rigalma
- Université de Brest, EA 3882, Laboratoire Universitaire de Biodiversité et Ecologie Microbienne, IBSAM, ESIAB, Technopôle Brest-Iroise, 29280 Plouzané, France.
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10
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Thomas F, Cosse A, Le Panse S, Kloareg B, Potin P, Leblanc C. Kelps feature systemic defense responses: insights into the evolution of innate immunity in multicellular eukaryotes. New Phytol 2014; 204:567-576. [PMID: 25041157 DOI: 10.1111/nph.12925] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2014] [Accepted: 06/09/2014] [Indexed: 06/03/2023]
Abstract
Brown algae are one of the few eukaryotic lineages that have evolved complex multicellularity, together with Opisthokonts (animals, fungi) and Plantae (land plants, green and red algae). In these three lineages, biotic stresses induce similar local defense reactions. Animals and land plants also feature a systemic immune response, protecting the whole organism after an attack on one of its parts. However, the occurrence of systemic defenses has never been investigated in brown algae. We elicited selected parts of the kelp Laminaria digitata and monitored distant, nonchallenged areas of the same individual for subsequent defense reactions. A systemic reaction was detected following elicitation on a distant area, including an oxidative response, an increase in haloperoxidase activities and a stronger resistance against herbivory. Based on experiments with pharmacological inhibitors, the liberation of free fatty acids is proposed to play a key role in systemic signaling, reminiscent of what is known in land plants. This study is the first report, outside the phyla of Opisthokonts and Plantae, of an intraorganism communication leading to defense reactions. These findings indicate that systemic immunity emerged independently at least three times, as a consequence of convergent evolution in multicellular eukaryotic lineages.
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Affiliation(s)
- François Thomas
- Sorbonne Universités, UPMC Univ Paris 06, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, CS 90074, F-29688, Roscoff Cedex, France
- CNRS, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, CS 90074, F-29688, Roscoff Cedex, France
| | - Audrey Cosse
- Sorbonne Universités, UPMC Univ Paris 06, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, CS 90074, F-29688, Roscoff Cedex, France
- CNRS, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, CS 90074, F-29688, Roscoff Cedex, France
| | - Sophie Le Panse
- Sorbonne Universités, UPMC Univ Paris 06, FR 2424, Station Biologique de Roscoff, CS 90074, F-29688, Roscoff Cedex, France
- CNRS, FR 2424, Station Biologique de Roscoff, CS 90074, F-29688, Roscoff Cedex, France
| | - Bernard Kloareg
- Sorbonne Universités, UPMC Univ Paris 06, FR 2424, Station Biologique de Roscoff, CS 90074, F-29688, Roscoff Cedex, France
- CNRS, FR 2424, Station Biologique de Roscoff, CS 90074, F-29688, Roscoff Cedex, France
| | - Philippe Potin
- Sorbonne Universités, UPMC Univ Paris 06, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, CS 90074, F-29688, Roscoff Cedex, France
- CNRS, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, CS 90074, F-29688, Roscoff Cedex, France
| | - Catherine Leblanc
- Sorbonne Universités, UPMC Univ Paris 06, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, CS 90074, F-29688, Roscoff Cedex, France
- CNRS, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, CS 90074, F-29688, Roscoff Cedex, France
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11
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Godard BG, Coolen M, Le Panse S, Gombault A, Ferreiro-Galve S, Laguerre L, Lagadec R, Wincker P, Poulain J, Da Silva C, Kuraku S, Carre W, Boutet A, Mazan S. Mechanisms of endoderm formation in a cartilaginous fish reveal ancestral and homoplastic traits in jawed vertebrates. Biol Open 2014; 3:1098-107. [PMID: 25361580 PMCID: PMC4232768 DOI: 10.1242/bio.20148037] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Abstract
In order to gain insight into the impact of yolk increase on endoderm development, we have analyzed the mechanisms of endoderm formation in the catshark S. canicula, a species exhibiting telolecithal eggs and a distinct yolk sac. We show that in this species, endoderm markers are expressed in two distinct tissues, the deep mesenchyme, a mesenchymal population of deep blastomeres lying beneath the epithelial-like superficial layer, already specified at early blastula stages, and the involuting mesendoderm layer, which appears at the blastoderm posterior margin at the onset of gastrulation. Formation of the deep mesenchyme involves cell internalizations from the superficial layer prior to gastrulation, by a movement suggestive of ingressions. These cell movements were observed not only at the posterior margin, where massive internalizations take place prior to the start of involution, but also in the center of the blastoderm, where internalizations of single cells prevail. Like the adjacent involuting mesendoderm, the posterior deep mesenchyme expresses anterior mesendoderm markers under the control of Nodal/activin signaling. Comparisons across vertebrates support the conclusion that endoderm is specified in two distinct temporal phases in the catshark as in all major osteichthyan lineages, in line with an ancient origin of a biphasic mode of endoderm specification in gnathostomes. They also highlight unexpected similarities with amniotes, such as the occurrence of cell ingressions from the superficial layer prior to gastrulation. These similarities may correspond to homoplastic traits fixed separately in amniotes and chondrichthyans and related to the increase in egg yolk mass.
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Affiliation(s)
- Benoit G Godard
- Sorbonne Universités, UPMC Univ Paris 06, CNRS, UMR 7150, 29688 Roscoff, France
| | - Marion Coolen
- Université d'Orléans-CNRS, UMR 6218, 45070 Orléans, France Present address: CNRS UPR 3294, Institute of Neurobiology Alfred Fessard, 91198 Gif-sur-Yvette, France
| | - Sophie Le Panse
- Plateforme d'Imagerie, Sorbonne Universités, UPMC Univ Paris 06, CNRS, FR 2424, Station Biologique, 29688 Roscoff, France
| | - Aurélie Gombault
- Université d'Orléans-CNRS, UMR 6218, 45070 Orléans, France Present address: UMR 7355, Université d'Orleans-CNRS, 45071 Orléans, France
| | - Susana Ferreiro-Galve
- Université d'Orléans-CNRS, UMR 6218, 45070 Orléans, France Present address: Instituto de Neurociencias, Consejo Superior de Investigaciones Científicas y Universidad Miguel Hernández, Campus San Juan de Alicante, 03550 Alicante, Spain
| | - Laurent Laguerre
- Sorbonne Universités, UPMC Univ Paris 06, CNRS, UMR 7150, 29688 Roscoff, France
| | - Ronan Lagadec
- Sorbonne Universités, UPMC Univ Paris 06, CNRS, UMR 7150, 29688 Roscoff, France
| | - Patrick Wincker
- CEA-Institut de Génomique-Genoscope, 2 rue Gaston-Crémieux, 91057 Evry, France
| | - Julie Poulain
- CEA-Institut de Génomique-Genoscope, 2 rue Gaston-Crémieux, 91057 Evry, France
| | - Corinne Da Silva
- CEA-Institut de Génomique-Genoscope, 2 rue Gaston-Crémieux, 91057 Evry, France
| | - Shigehiro Kuraku
- Genome Resource and Analysis Unit (GRAS), Center for Developmental Biology, RIKEN.2-2-3 Minatojima-minami, Chuo-KU, Kobe 650-0047, Japan
| | - Wilfrid Carre
- ABiMS, Sorbonne Universités, UPMC Univ Paris 06, CNRS, FR 2424, 29688 Roscoff, France
| | - Agnès Boutet
- Sorbonne Universités, UPMC Univ Paris 06, CNRS, UMR 7150, 29688 Roscoff, France
| | - Sylvie Mazan
- Sorbonne Universités, UPMC Univ Paris 06, CNRS, UMR 7150, 29688 Roscoff, France
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12
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Lepelletier F, Karpov SA, Alacid E, Le Panse S, Bigeard E, Garcés E, Jeanthon C, Guillou L. Dinomyces arenysensis gen. et sp. nov. (Rhizophydiales, Dinomycetaceae fam. nov.), a Chytrid Infecting Marine Dinoflagellates. Protist 2014; 165:230-44. [DOI: 10.1016/j.protis.2014.02.004] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2014] [Revised: 02/19/2014] [Accepted: 02/21/2014] [Indexed: 10/25/2022]
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13
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Lepelletier F, Karpov SA, Le Panse S, Bigeard E, Skovgaard A, Jeanthon C, Guillou L. Parvilucifera rostrata sp. nov. (Perkinsozoa), a Novel Parasitoid that Infects Planktonic Dinoflagellates. Protist 2014; 165:31-49. [DOI: 10.1016/j.protis.2013.09.005] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2013] [Revised: 09/04/2013] [Accepted: 09/15/2013] [Indexed: 10/26/2022]
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14
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Le Bail A, Billoud B, Le Panse S, Chenivesse S, Charrier B. ETOILE regulates developmental patterning in the filamentous brown alga Ectocarpus siliculosus. Plant Cell 2011; 23:1666-78. [PMID: 21478443 PMCID: PMC3101566 DOI: 10.1105/tpc.110.081919] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2010] [Revised: 01/14/2011] [Accepted: 03/18/2011] [Indexed: 05/06/2023]
Abstract
Brown algae are multicellular marine organisms evolutionarily distant from both metazoans and land plants. The molecular or cellular mechanisms that govern the developmental patterning in brown algae are poorly characterized. Here, we report the first morphogenetic mutant, étoile (etl), produced in the brown algal model Ectocarpus siliculosus. Genetic, cellular, and morphometric analyses showed that a single recessive locus, ETL, regulates cell differentiation: etl cells display thickening of the extracellular matrix (ECM), and the elongated, apical, and actively dividing E cells are underrepresented. As a result of this defect, the overrepresentation of round, branch-initiating R cells in the etl mutant leads to the rapid induction of the branching process at the expense of the uniaxial growth in the primary filament. Computational modeling allowed the simulation of the etl mutant phenotype by including a modified response to the neighborhood information in the division rules used to specify wild-type development. Microarray experiments supported the hypothesis of a defect in cell-cell communication, as primarily Lin-Notch-domain transmembrane proteins, which share similarities with metazoan Notch proteins involved in binary cell differentiation were repressed in etl. Thus, our study highlights the role of the ECM and of novel transmembrane proteins in cell-cell communication during the establishment of the developmental pattern in this brown alga.
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Affiliation(s)
- Aude Le Bail
- Centre National de la Recherche Scientifique, Unité Mixte de Recherche 7139 Végétaux Marins et Biomolécules, Station Biologique, F 29682 Roscoff, France
- Université Pierre et Marie Curie-Paris 6, Unité Mixte de Recherche 7139 Végétaux Marins et Biomolécules, Station Biologique, F 29682 Roscoff, France
| | - Bernard Billoud
- Centre National de la Recherche Scientifique, Unité Mixte de Recherche 7139 Végétaux Marins et Biomolécules, Station Biologique, F 29682 Roscoff, France
- Université Pierre et Marie Curie-Paris 6, Unité Mixte de Recherche 7139 Végétaux Marins et Biomolécules, Station Biologique, F 29682 Roscoff, France
| | - Sophie Le Panse
- Plateforme d’Imagerie, Fédération de Recherche 2424, Centre National de la Recherche Scientifique, Station Biologique, Place Georges Teissier, 29682 Roscoff Cedex, France
| | - Sabine Chenivesse
- Centre National de la Recherche Scientifique, Unité Mixte de Recherche 7139 Végétaux Marins et Biomolécules, Station Biologique, F 29682 Roscoff, France
- Université Pierre et Marie Curie-Paris 6, Unité Mixte de Recherche 7139 Végétaux Marins et Biomolécules, Station Biologique, F 29682 Roscoff, France
| | - Bénédicte Charrier
- Centre National de la Recherche Scientifique, Unité Mixte de Recherche 7139 Végétaux Marins et Biomolécules, Station Biologique, F 29682 Roscoff, France
- Université Pierre et Marie Curie-Paris 6, Unité Mixte de Recherche 7139 Végétaux Marins et Biomolécules, Station Biologique, F 29682 Roscoff, France
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15
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Barbeyron T, Lerat Y, Sassi JF, Le Panse S, Helbert W, Collén PN. Persicivirga ulvanivorans sp. nov., a marine member of the family Flavobacteriaceae that degrades ulvan from green algae. Int J Syst Evol Microbiol 2010; 61:1899-1905. [PMID: 20833882 DOI: 10.1099/ijs.0.024489-0] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A rod shaped, Gram-stain-negative, chemo-organotrophic, heterotrophic, strictly aerobic, non-gliding bacterium, designated strain PLR(T), was isolated from faeces of the mollusc Aplysia punctata (Mollusca, Gastropoda) that had been fed with green algae belonging to the genus Ulva. The novel strain was able to degrade ulvan, a polysaccharide extracted from green algae (Chlorophyta, Ulvophyceae). The taxonomic position of strain PLR(T) was investigated by using a polyphasic approach. Strain PLR(T) was dark orange, oxidase-positive, catalase-positive and grew optimally at 25 °C, at pH 7.5 and in the presence of 2.5 % (w/v) NaCl with an oxidative metabolism using oxygen as the electron acceptor. Nitrate could not be used as the electron acceptor. Strain PLR(T) had a Chargaff's coefficient (DNA G+C content) of 35.3 mol%. Phylogenetic analysis based on the sequence of the 16S rRNA gene placed the novel strain in the family Flavobacteriaceae (phylum 'Bacteroidetes'), within a clade comprising Stenothermobacter spongiae, Nonlabens tegetincola, Sandarakinotalea sediminis, Persicivirga xylanidelens and Persicivirga dokdonensis. The closest neighbours of strain PLR(T) were P. xylanidelens and P. dokdonensis, sharing 95.2 and 95.5 % 16S rRNA gene sequence similarity, respectively. Phylogenetic inference and differential phenotypic characteristics demonstrated that strain PLR(T) represents a novel species of the genus Persicivirga, for which the name Persicivirga ulvanivorans sp. nov. is proposed. The type strain is PLR(T) ( = CIP 110082(T) = DSM 22727(T)).
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Affiliation(s)
- Tristan Barbeyron
- Centre National de la Recherche Scientifique, Université Pierre et Marie Curie-Paris 6, Unité Mixte de Recherche 7139 'Marine Plants and Biomolecules', Station Biologique, F-29682 Roscoff Cedex, Bretagne, France
| | - Yannick Lerat
- Centre d'Etudes et de Valorisation des Algues, Presqu'île de Pen Lan, BP3, 22610 Pleubian, Bretagne, France
| | - Jean-François Sassi
- Centre d'Etudes et de Valorisation des Algues, Presqu'île de Pen Lan, BP3, 22610 Pleubian, Bretagne, France
| | - Sophie Le Panse
- Centre National de la Recherche Scientifique, Université Pierre et Marie Curie-Paris 6, FR2424 Service d'Imagerie, Station Biologique, F-29682 Roscoff Cedex, Bretagne, France
| | - William Helbert
- Centre National de la Recherche Scientifique, Université Pierre et Marie Curie-Paris 6, Unité Mixte de Recherche 7139 'Marine Plants and Biomolecules', Station Biologique, F-29682 Roscoff Cedex, Bretagne, France
| | - Pi Nyvall Collén
- Centre National de la Recherche Scientifique, Université Pierre et Marie Curie-Paris 6, Unité Mixte de Recherche 7139 'Marine Plants and Biomolecules', Station Biologique, F-29682 Roscoff Cedex, Bretagne, France
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16
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Le Bail A, Billoud B, Kowalczyk N, Kowalczyk M, Gicquel M, Le Panse S, Stewart S, Scornet D, Cock JM, Ljung K, Charrier B. Auxin metabolism and function in the multicellular brown alga Ectocarpus siliculosus. Plant Physiol 2010; 153:128-44. [PMID: 20200071 PMCID: PMC2862433 DOI: 10.1104/pp.109.149708] [Citation(s) in RCA: 63] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2009] [Accepted: 02/17/2010] [Indexed: 05/20/2023]
Abstract
Ectocarpus siliculosus is a small brown alga that has recently been developed as a genetic model. Its thallus is filamentous, initially organized as a main primary filament composed of elongated cells and round cells, from which branches differentiate. Modeling of its early development suggests the involvement of very local positional information mediated by cell-cell recognition. However, this model also indicates that an additional mechanism is required to ensure proper organization of the branching pattern. In this paper, we show that auxin indole-3-acetic acid (IAA) is detectable in mature E. siliculosus organisms and that it is present mainly at the apices of the filaments in the early stages of development. An in silico survey of auxin biosynthesis, conjugation, response, and transport genes showed that mainly IAA biosynthesis genes from land plants have homologs in the E. siliculosus genome. In addition, application of exogenous auxins and 2,3,5-triiodobenzoic acid had different effects depending on the developmental stage of the organism, and we propose a model in which auxin is involved in the negative control of progression in the developmental program. Furthermore, we identified an auxin-inducible gene called EsGRP1 from a small-scale microarray experiment and showed that its expression in a series of morphogenetic mutants was positively correlated with both their elongated-to-round cell ratio and their progression in the developmental program. Altogether, these data suggest that IAA is used by the brown alga Ectocarpus to relay cell-cell positional information and induces a signaling pathway different from that known in land plants.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | | | - Bénédicte Charrier
- CNRS-Université Pierre et Marie Curie, UMR 7139 Marine Plants and Biomolecules (A.L.B., B.B., N.K., M.G., S.S., D.S., J.M.C., B.C.), and Platform of Cytology, CNRS FR2424 (S.L.P.), Station Biologique de Roscoff, 29682 Roscoff cedex, France; Department of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Swedish University for Agricultural Sciences, S–901 83 Umea, Sweden (M.K., K.L.)
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17
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Le Bail A, Kowalczyk N, Kowalczyk M, Billoud B, Le Panse S, Stewart S, Gicquel M, Ljung K, Charrier B. 13-P010 Auxin in the control of the development of the brown alga Ectocarpus siliculosus. Mech Dev 2009. [DOI: 10.1016/j.mod.2009.06.483] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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18
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Maier P, Rathfelder N, Finkbeiner MG, Taxis C, Mazza M, Panse SL, Haguenauer-Tsapis R, Knop M. Cytokinesis in yeast meiosis depends on the regulated removal of Ssp1p from the prospore membrane. EMBO J 2007; 26:1843-52. [PMID: 17347652 PMCID: PMC1847655 DOI: 10.1038/sj.emboj.7601621] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2006] [Accepted: 01/26/2007] [Indexed: 01/21/2023] Open
Abstract
Intracellular budding is a developmentally regulated type of cell division common to many fungi and protists. In Saccaromyces cerevisiae, intracellular budding requires the de novo assembly of membranes, the prospore membranes (PSMs) and occurs during spore formation in meiosis. Ssp1p is a sporulation-specific protein that has previously been shown to localize to secretory vesicles and to recruit the leading edge protein coat (LEP coat) proteins to the opening of the PSM. Here, we show that Ssp1p is a multidomain protein with distinct domains important for PI(4,5)P(2) binding, binding to secretory vesicles and inhibition of vesicle fusion, interaction with LEP coat components and that it is subject to sumoylation and degradation. We found non-essential roles for Ssp1p on the level of vesicle transport and an essential function of Ssp1p to regulate the opening of the PSM. Together, our results indicate that Ssp1p has a domain architecture that resembles to some extent the septin class of proteins, and that the regulated removal of Ssp1p from the PSM is the major step underlying cytokinesis in yeast sporulation.
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Affiliation(s)
- Peter Maier
- EMBL, Cell Biology and Biophysics Unit, Heidelberg, Germany
| | | | | | - Christof Taxis
- EMBL, Cell Biology and Biophysics Unit, Heidelberg, Germany
| | | | | | | | - Michael Knop
- EMBL, Cell Biology and Biophysics Unit, Heidelberg, Germany
- EMBL, Cell Biology and Biophysics Unit, Meyerhofstr. 1, 69117 Heidelberg, Germany. Tel.: +49 6221 387631; Fax: +49 6221 387512; E-mail:
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19
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Louvet E, Junéra HR, Le Panse S, Hernandez-Verdun D. Dynamics and compartmentation of the nucleolar processing machinery. Exp Cell Res 2004; 304:457-70. [PMID: 15748891 DOI: 10.1016/j.yexcr.2004.11.018] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2004] [Revised: 11/08/2004] [Accepted: 11/10/2004] [Indexed: 11/17/2022]
Abstract
In active nucleoli, machineries involved in the biogenesis of ribosomal RNAs (rRNAs) are compartmentalized. The late rRNA processing proteins are localized in the granular component (GC). Here we investigate the behavior of these proteins when production of 28S is impaired and when this blockage is reversed. The 5,6-dichloro-1-beta-D-ribofuranosylbenzimidazole (DRB) provokes dispersion of rDNA clusters and we demonstrate that DRB induces disconnection of the late rRNA processing proteins from the transcription sites. These processing proteins are still associated in independent masses without detectable 28S rRNA, indicating that compartmentation of the late rRNA processing machinery is not necessarily linked to processing activity. Removing DRB reverses this disconnection and promotes rRNA processing. Nucleolar reformation occurs in two successive steps, dynamic recruitment to transcription sites of the processing proteins, followed by rDNA compaction. We demonstrate that both steps are sensitive to temperature, suggesting an energy-dependent process. Traffic of processing proteins analyzed by fluorescence recovery after photobleaching is similar in masses disconnected from transcription sites and in the granular component of the active nucleolus. This suggests that protein dynamics and interactions, and not only their processing activity, determine compartmentation of the nucleolar machineries.
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MESH Headings
- Active Transport, Cell Nucleus/physiology
- Cell Compartmentation/drug effects
- Cell Compartmentation/physiology
- Cell Nucleolus/drug effects
- Cell Nucleolus/metabolism
- Cell Nucleolus/ultrastructure
- Dichlororibofuranosylbenzimidazole/pharmacology
- HeLa Cells
- Humans
- Microscopy, Electron, Transmission
- Nonlinear Dynamics
- Nuclear Proteins/drug effects
- Nuclear Proteins/metabolism
- Nucleic Acid Synthesis Inhibitors/pharmacology
- Protein Transport/physiology
- RNA, Ribosomal/biosynthesis
- RNA, Ribosomal, 28S/drug effects
- RNA, Ribosomal, 28S/metabolism
- Temperature
- Transcription, Genetic/drug effects
- Transcription, Genetic/physiology
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Affiliation(s)
- Emilie Louvet
- Institut Jacques Monod, CNRS, University Paris VI and Paris VII, 2 place Jussieu, 75251 Paris Cedex 05, France
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Chesneau L, Dupré S, Burdina A, Roger J, Le Panse S, Jacquet M, Cuif MH. Gyp5p and Gyl1p are involved in the control of polarized exocytosis in budding yeast. J Cell Sci 2004; 117:4757-67. [PMID: 15331637 DOI: 10.1242/jcs.01349] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022] Open
Abstract
We report here elements for functional characterization of two members of the Saccharomyces cerevisiae Ypt/Rab GTPase activating proteins family (GAP): Gyp5p, a potent GAP in vitro for Ypt1p and Sec4p, and the protein Ymr192wp/APP2 that we propose to rename Gyl1p (GYp like protein). Immunofluorescence experiments showed that Gyp5p and Gyl1p partly colocalize at the bud emergence site, at the bud tip and at the bud neck during cytokinesis. Subcellular fractionation and co-immunoprecipitation experiments showed that Gyp5p and Gyl1p co-fractionate with post-Golgi vesicles and plasma membrane, and belong to the same protein complexes in both localizations. We found by co-immunoprecipitation experiments that a fraction of Gyp5p interacts with Sec4p, a small GTPase involved in exocytosis, and that a fraction of Gyl1p associates at the plasma membrane with the Gyp5p/Sec4p complexes. We showed also that GYP5 genetically interacts with SEC2, which encodes the Sec4p exchange factor. Examination of the gyp5Δgyl1Δ mutants grown at 13°C revealed a slight growth defect, a secretion defect and an accumulation of secretory vesicles in the small-budded cells. These data suggest that Gyp5p and Gyl1p are involved in control of polarized exocytosis.
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Affiliation(s)
- Laurent Chesneau
- Institut de Génétique et Microbiologie, CNRS-UMR 8621, Université Paris XI, 91 405 Orsay Cédex, France
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Belgareh-Touzé N, Corral-Debrinski M, Launhardt H, Galan JM, Munder T, Le Panse S, Haguenauer-Tsapis R. Yeast functional analysis: identification of two essential genes involved in ER to Golgi trafficking. Traffic 2003; 4:607-17. [PMID: 12911815 DOI: 10.1034/j.1600-0854.2003.00116.x] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
We screened for genes potentially involved in the secretory and vacuolar pathways a collection of 61 yeast strains, each bearing an essential orphan gene regulated by the tetO7-CYC1 promoter that can be down-regulated by doxycycline. After down-regulating the expression of these genes, we performed systematic Western blot analysis for markers of the secretory and vacuolar pathways that undergo post-translational modifications in their intracellular trafficking. Accumulation of protein precursors, revealed by Western immunoblot analysis, indicates defects in the secretory pathway or in associated biochemical modifications. After screening the whole collection, we identified two genes involved in ER to Golgi trafficking: RER2, a cis-prenyl transferase, and USE1, the function of which was unknown. We demonstrated that repression of USE1 also leads to BiP secretion, and therefore likely affects retrograde, in addition to anterograde, ER to Golgi trafficking. The collection also includes two essential genes involved in intracellular trafficking that were conveniently repressed without resulting growth or trafficking defects.
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Affiliation(s)
- Naïma Belgareh-Touzé
- Institut Jacques Monod, CNRS UMR7592, Universités Paris VI et VII, 2 place Jussieu, 75251 Paris Cedex 05, France
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Blot G, Janvier K, Le Panse S, Benarous R, Berlioz-Torrent C. Targeting of the human immunodeficiency virus type 1 envelope to the trans-Golgi network through binding to TIP47 is required for env incorporation into virions and infectivity. J Virol 2003; 77:6931-45. [PMID: 12768012 PMCID: PMC156179 DOI: 10.1128/jvi.77.12.6931-6945.2003] [Citation(s) in RCA: 112] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
Here, we report that human immunodeficiency virus type 1 (HIV-1) Env glycoprotein is located mainly in the trans-Golgi network (TGN) due to determinants present in the cytoplasmic domain of the transmembrane gp41 glycoprotein (TMgp41). Internalization assays demonstrated that Env present at the cell surface returns to the TGN. We found that the cytoplasmic domain of TMgp41 binds to TIP47, a protein required for the transport of mannose-6-phosphate receptors from endosomes to the TGN. Overexpression of a mutant of TIP47 affected the transport of Env from endosomes to the TGN. Retrograde transport of Env to the TGN requires a Y(802)W(803) diaromatic motif present in the TMgp41 cytoplasmic domain. Mutation of this motif abolished both targeting to the TGN as well as interaction with TIP47. These data support the view that binding of TIP47 to HIV-1 Env facilitates its delivery to the TGN. Lastly, we show that virus mutated in the Y(802)W(803) motif is poorly infectious and presents a defect in Env incorporation, supporting a model in which retrograde transport of Env is implicated in the optimization of fully infectious HIV-1 production.
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Affiliation(s)
- Guillaume Blot
- Department of Infectious Diseases, Institut Cochin, INSERM U567, CNRS UMR 8104, Université R. Descartes Paris V, 75014 Paris, France
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Panse SL, Masson C, Héliot L, Chassery JM, Junéra HR, Hernandez-Verdun D. 3-D organization of ribosomal transcription units after DRB inhibition of RNA polymerase II transcription. J Cell Sci 1999; 112 ( Pt 13):2145-54. [PMID: 10362544 DOI: 10.1242/jcs.112.13.2145] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
In each bead of the nucleolar necklace, using adenosine analog DRB-treated PtK1 cells, we investigated the three components of rDNA transcription, i.e. the gene, transcription factor UBF and transcripts. In situ hybridization revealed the unraveling and 3-D dispersion of most of the rDNA coding sequences within the nucleus. The signals were small, of similar intensity and tandemly organized in the necklace. This observation is compatible with the fact that they might correspond to single gene units. Active transcription was visualized in these units, demonstrating that they were active functional units. Transcript labeling was not similar for each unit, contrary to UBF labeling. UBF and rRNA transcripts were only partially colocalized, as demonstrated by 3-D image analysis and quantification. As visualized by electron microscopy, the necklace was composed of a small fibrillar center partially surrounded by a dense fibrillar component. The 3-D arrangement of this individual unit in the necklace, investigated both by confocal and electron microscopy in the same cells, showed that the individual beads were linked by a dense fibrillar component. The reversibility of this organization after removal of DRB indicated that the beads in the necklace are certainly the elementary functional domain of the nucleolus. In addition, these results lead us to suggest that the organization of a functional domain, presumably corresponding to a single gene, can be studied by in situ approaches.
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Affiliation(s)
- S L Panse
- Institut Jacques Monod, 75251 Paris Cedex 05, France
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