Inter-annual fluctuations of sociability in the common shrew (Sorex araneus L.) as determined by a preference test: A case of balancing selection?

The specific aim of our study was to test individual common shrews from a population monitored long-term. In a preference test, we revealed sex-related differences in behavioural traits of young common shrews and consistent individual differences in sociability, boldness and in an exploration pattern that have not been reported previously. More active animals were bolder and more superficial in the exploration of non-social objects as compared to shier shrews. Significant inter-annual differences in sociability, boldness and exploratory activity were observed. When we assessed correlations of sociability with population density, non-residents' abundance, activity shared in space, survivorship and home range size, we found a positive association with shared spatial activity and home range size. Contrary to expectation, sociability did not correlate with the density of residents and survivorship. A significant negative association of sociability with non-residents' abundance was documented. Survivorship was associated only with an exploration pattern. The thoroughness of exploration positively correlated with non-residents' abundance. We regard the inter-annual changes in sociability that we observed in the test as a by-product of survival of shrews with various exploration patterns that are associated with dispersal. We can hypothesise that the personality differences registered in this study are maintained by balancing frequency-dependent selection of animals that is associated with differences in habitat quality throughout the population cycle.

NETO2 Is Deregulated in Breast, Prostate, and Colorectal Cancer and Participates in Cellular Signaling

The NETO2 gene (neuropilin and tolloid-like 2) encodes a protein that acts as an accessory subunit of kainate receptors and is predominantly expressed in the brain. Upregulation of NETO2 has been observed in several tumors; however, its role in tumorigenesis remains unclear. In this study, we investigated NETO2 expression in breast, prostate, and colorectal cancer using quantitative PCR (qPCR), as well as the effect of shRNA-mediated NETO2 silencing on transcriptome changes in colorectal cancer cells. In the investigated tumors, we observed both increased and decreased NETO2 mRNA levels, presenting no correlation with the main clinicopathological characteristics. In HCT116 cells, NETO2 knockdown resulted in the differential expression of 17 genes and 2 long non-coding RNAs (lncRNAs), associated with the upregulation of circadian rhythm and downregulation of several cancer-associated pathways, including Wnt, transforming growth factor (TGF)-β, Janus kinase (JAK)-signal transducer and activator of transcription (STAT), mitogen-activated protein kinase (MAPK), and phosphatidylinositol 3-kinase (PI3K)/protein kinase B (AKT) pathways. Furthermore, we demonstrated the possibility to utilize a novel model organism, short-lived fish Nothobranchius furzeri, for evaluating NETO2 functions. The ortholog neto2b in N. furzeri demonstrated a high similarity in nucleotide and amino acid sequences with human NETO2, as well as was characterized by stable expression in various fish tissues. Collectively, our findings demonstrate the deregulation of NETO2 in the breast, prostate, and colorectal cancer and its participation in the tumor development primarily through cellular signaling.

Multiple paragangliomas: a case report

Background

Carotid and vagal paragangliomas (CPGLs and VPGLs) are rare neoplasms that arise from the paraganglia located at the bifurcation of carotid arteries and vagal trunk, respectively. Both tumors can occur jointly as multiple paragangliomas accounting for approximately 10 to 20% of all head and neck paragangliomas. However, molecular and genetic mechanisms underlying the pathogenesis of multiple paragangliomas remain elusive.

Case presentation

We report a case of multiple paragangliomas in a patient, manifesting as bilateral CPGL and unilateral VPGL. Tumors were revealed via computed tomography and ultrasound study and were resected in two subsequent surgeries. Both CPGLs and VPGL were subjected to immunostaining for succinate dehydrogenase (SDH) subunits and exome analysis. A likely pathogenic germline variant in the SDHD gene was indicated, while likely pathogenic somatic variants differed among the tumors.

Conclusions

The identified germline variant in the SDHD gene seems to be a driver in the development of multiple paragangliomas. However, different spectra of somatic variants identified in each tumor indicate individual molecular mechanisms underlying their pathogenesis.

Mutation profiling in eight cases of vagal paragangliomas

Background

Vagal paragangliomas (VPGLs) belong to a group of rare head and neck neuroendocrine tumors. VPGLs arise from the vagus nerve and are less common than carotid paragangliomas. Both diagnostics and therapy of the tumors raise significant challenges. Besides, the genetic and molecular mechanisms behind VPGL pathogenesis are poorly understood.

Methods

The collection of VPGLs obtained from 8 patients of Russian population was used in the study. Exome library preparation and high-throughput sequencing of VPGLs were performed using an Illumina technology.

Results

Based on exome analysis, we identified pathogenic/likely pathogenic variants of the SDHx genes, frequently mutated in paragangliomas/pheochromocytomas. SDHB variants were found in three patients, whereas SDHD was mutated in two cases. Moreover, likely pathogenic missense variants were also detected in SDHAF3 and SDHAF4 genes encoding for assembly factors for the succinate dehydrogenase (SDH) complex. In a patient, we found a novel variant of the IDH2 gene that was predicted as pathogenic by a series of algorithms used (such as SIFT, PolyPhen2, FATHMM, MutationTaster, and LRT). Additionally, pathogenic/likely pathogenic variants were determined for several genes, including novel genes and some genes previously reported as associated with different types of tumors.

Conclusions

Results indicate a high heterogeneity among VPGLs, however, it seems that driver events in most cases are associated with mutations in the SDHx genes and SDH assembly factor-coding genes that lead to disruptions in the SDH complex.

Who are you, Griselda? A replacement name for a new genus of the Asiatic short-tailed shrews (Mammalia, Eulipotyphla, Soricidae): molecular and morphological analyses with the discussion of tribal affinities

The first genetic study of the holotype of the Gansu short-tailed shrew, Blarinella griselda Thomas, 1912, is presented. The mitochondrial analysis demonstrated that the type specimen of B. griselda is close to several recently collected specimens from southern Gansu, northern Sichuan and Shaanxi, which are highly distinct from the two species of Asiatic short-tailed shrews of southern Sichuan, Yunnan, and Vietnam, B. quadraticauda and B. wardi. Our analysis of four nuclear genes supported the placement of B. griselda as sister to B. quadraticauda / B. wardi, with the level of divergence between these two clades corresponding to that among genera of Soricinae. A new generic name, Parablarinella, is proposed for the Gansu short-tailed shrew. Karyotypes of Parablarinella griselda (2n = 49, NFa = 50) and B. quadraticauda (2n = 49, NFa = 62) from southern Gansu are described. The tribal affinities of Blarinellini and Blarinini are discussed.

Ecotoxicity of different-shaped silver nanoparticles: Case of zebrafish embryos

As the worldwide application of silver nanomaterials in commercial products increases every year, and concern about the environmental risks of such nanoparticles also grows. A clear understanding of how different characteristics of nanoparticles contribute in their toxic behavior to organisms are imperative for predicting and control nanotoxicity. Within our research, we investigated the toxic effect of two types of silver nanoparticles (spherical and flat Ag nanoparticles) on zebrafish (Danio rerio) embryos. Particular interest was paid to proper characterization of Ag nanoparticles initially and during the experiment. A proper test medium was found and used for ecotoxicity evaluation. The behavior of flat silver nanoparticles with respect to embryos of zebrafish was analyzed and compared to the ecotoxicity of silver ionic form (AgNO₃). Both types of nanoparticles showed a more pronounced toxic effect to Danio rerio embryos than silver ions (AgNO₃), while silver nanoplates were more harmful than Ag nanospheres. While previous investigations showed that toxicity of Ag nanoparticles can be explained by the presence of Ag⁺ in solution of silver nanoparticles, our results demonstrate that the harmful effects of nanosilver may be associated with silver nanoparticles themselves than with ionic silver released into solution.

Western Siberia rivers and the boundaries between chromosomal races of the common shrew (Sorex araneus L. Lipotyphla, Mammalia)

In Western Siberia, most boundaries between common shrew chromosomal races have been found to pass along the banks of rivers, mainly those flowing in the meridional direction. The races Serov and Novosibirsk co-inhabited the right bank of the Irtysh. The easternmost point of the Novosibirsk race has been found on the middle Yenisei River, while the race Tomsk in this area was only on the right (eastern) bank.

Changes in the contents of strontium, barium, and lead in scales of bream Abramis brama from the Mozhaisk Reservoir over a quarter century

The heavy metal contents in the scales of bream (Abramis brama) from the Mozhaisk Reservoir collected in the second half of the 1980s were compared to the current values. The concentrations of three out of the seven elements studied in the bream scales have changed severalfold during the past quarter century: that of strontium has decreased, and those of barium and lead have increased. Short-term variations of heavy metal contents have proved to be smaller than the observed long-term differences. There is grounds to believe that these long-term differences adequately reflect the changes that have occurred in the water body.

[Evaluation of genetic homeostasis in animals at different stages of ontogenesis in the environment]

Modern methods of genetic homeostasis assessment in animals are described in the present article. The single gel-electrophoresis test (Comet Assay), micronuclei test, chromosome aberration frequency, and sister chromatid exchanges are reviewed in detail. The questions of test-sensitivity of given methods and principles or their application for genetic homeostasis assessment in wild populations of animals are considered.

[Nanoparticles in the environment and their effect on hydrobionts]

This paper summarizes the data on the effect of engineered nanoparticles on aquatic organisms. The issues of penetration and accumulation of nanoparticles in the body of hydrobionts and their toxic effect, biotransformation, and migration along food chains are considered. It is demonstrated that the behavior of nanomaterials in the environment and their effect on living organisms have been studied insufficiently and require close attention, because their release into the environment will increase in the very near future.